Changes between Version 1 and Version 2 of 2024-7-25

Timestamp:

Jul 25, 2024, 1:01:57 PM (15 months ago)

Author:

Tom Goddard

Comment:

--

2024-7-25

@@ -7 +7 @@
 = Agenda =
 
-* Tom Goddard, Foldseek
+* Tom Goddard, Foldseek, [https://www.rbvi.ucsf.edu/chimerax/data/foldseek-jul2024/foldseek.html slides]
 
 = Discussion Notes =
 
+* New CPUs for plato cluster
+  - Plato downtime next Thursday August 1, 3 - 6 pm to upgrade CPUs and firmware.
+  - New CPUs are to support more than 1 TB of memory.
+
+* NIAID contract
+  - UCSF was not sending monthly invoices to GuideHouse, but now they are.
+
+* Foldseek ChimeraX tool
+  - [https://www.rbvi.ucsf.edu/chimerax/data/foldseek-jul2024/foldseek.html Slides].
+  - Demonstration of in-development ChimeraX tool for Foldseek searches and visualization of results.
+  - Don't use red and green on sequence plot to show conservation, not color-blind friendly.
+  - Scooter saw keynote address by Martin Steinneger last week at ISMB conference including Foldseek, mmseqs2, alphafold, and newer work.
+  - Scooter will get link so we can watch the Steinneger talk, possibly next Monday.
+  - Most of the Foldseek visualizations would be useful for BLAST Protein tool results.
+  - Discussion of how to make Foldseek table buttons consistent with BLAST Protein table.
 
 = Action Items =