Changes between Version 1 and Version 2 of 2024-7-25


Ignore:
Timestamp:
Jul 25, 2024, 1:01:57 PM (17 months ago)
Author:
Tom Goddard
Comment:

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  • 2024-7-25

    v1 v2  
    77= Agenda =
    88
    9 * Tom Goddard, Foldseek
     9* Tom Goddard, Foldseek, [https://www.rbvi.ucsf.edu/chimerax/data/foldseek-jul2024/foldseek.html slides]
    1010
    1111= Discussion Notes =
    1212
     13* New CPUs for plato cluster
     14  - Plato downtime next Thursday August 1, 3 - 6 pm to upgrade CPUs and firmware.
     15  - New CPUs are to support more than 1 TB of memory.
     16
     17* NIAID contract
     18  - UCSF was not sending monthly invoices to GuideHouse, but now they are.
     19
     20* Foldseek ChimeraX tool
     21  - [https://www.rbvi.ucsf.edu/chimerax/data/foldseek-jul2024/foldseek.html Slides].
     22  - Demonstration of in-development ChimeraX tool for Foldseek searches and visualization of results.
     23  - Don't use red and green on sequence plot to show conservation, not color-blind friendly.
     24  - Scooter saw keynote address by Martin Steinneger last week at ISMB conference including Foldseek, mmseqs2, alphafold, and newer work.
     25  - Scooter will get link so we can watch the Steinneger talk, possibly next Monday.
     26  - Most of the Foldseek visualizations would be useful for BLAST Protein tool results.
     27  - Discussion of how to make Foldseek table buttons consistent with BLAST Protein table.
    1328
    1429= Action Items =