Changes between Version 1 and Version 2 of 2022-7-7

Timestamp:

Jul 7, 2022, 2:51:10 PM (3 years ago)

Author:

Tom Goddard

Comment:

--

2022-7-7

@@ -1 +1 @@
 = Attendees =
 
-* Lars, Nadya, Zach, Eric,  Elaine, Greg, TomG, Scooter, TomF
+* Lars, Nadya, Zach, Eric,  Elaine, TomG, Scooter
 
 On-site Genentech Hall N436A
@@ -7 +7 @@
 = Agenda =
 
-* Lars presenting on proteomics work
+* Lars Jensen presenting on proteomics work
+* ChimeraX 1.5 roadmap 5 minute quick look
 * Review Action Items listed below
 
 = Discussion Notes =
 
+* Lars Jensen on proteomics data sources, visualization and VR
+  - Lars is from NOvo Nordisk Foundation Center for Protein Research.
+  - Talk: Visualizing omics data on protein networks in 2D and 3D
+  - Explained 10 ways to see that genes are functionally related
+  - Talked about text mining including deep learning
+  - Collecting all data sources is hard and boring
+  - Can assign confidence scores to protein-protein functional interactions
+  - Can transfer interaction knowledge to orthologs
+  - Talked about Cytoscape String app for making meaning full omics graph depictions.
+  - Testing if virtual reality feasible for large network visualization
+  - Quest 2 standalone headset is cheap, 10 million sold, can reach large audience
+  - Browser WebXR apps simple to deliver
+  - VR apps for single cell expression data and also general network viz exist, but they need a Windows PC.
+  - Lars used U-CIE coloring app and A-frame web vr on quest 2 and got smooth viewing of 14000 point data set.
+  - Lars also tried 3400 node, 16000 edge Cytoscape exported network wrapped on a hemisphere in VR -- also fine performance.
+  - Have not yet tried any data interaction in VR.
+
+* ChimeraX roadmap
+  - Did not have time in today's meeting to look at this.
 
 = Action Items =