Changes between Version 1 and Version 2 of 2022-4-7


Ignore:
Timestamp:
Apr 7, 2022, 5:30:00 PM (4 years ago)
Author:
Tom Goddard
Comment:

--

Legend:

Unmodified
Added
Removed
Modified
  • 2022-4-7

    v1 v2  
    1515= Discussion Notes =
    1616
     17* NIAID contract
     18  - Scooter met with MSC, UCSF contract people, and Darrell to work out hourly contract.
     19  - Contract expected to start May 1 and last 10 months.
     20  - Will have monthly progress reports
     21  - Includes two 5 day trips for TomG to visit RML and Bethesda.
     22
     23* Computer security audit
     24  - UCSF assigned us a system administrator Nick to help with security upgrade tasks.
     25
     26* CGL email
     27  - UCSF IT wants to redirect all CGL email through ProofPoint cloud scanning service.
     28  - Would have 25 Mbyte message size limit, no Python attachments, URLs converted to go through urldefense.
     29  - This impairs our daily work, mailing list Python attachments, bug report email with large attachments.
     30  - UCSF IT said understands our special needs and is evaluating.
     31  - Sali lab email has already converted to ProofPoint scanning.
     32  - Greg says he sent Sali lab Python script attachment earlier but has not heard back.
     33  - Possibly in the future we may host Trac and mailing lists offsite (e.g. google groups).
     34  - Aim is to not disrupt current working systems and keep email functioning well.
     35
     36* Wynton BeeGFS
     37  - BeeGFS was patched yesterday and seems to have fixed stability problem.
     38  - Patch also seemed to give 25% speedup.
     39
     40* Trac
     41  - Fewer Trac corrupted database problems recently
     42  - BeeGFS file system problems may be the cause of those.
     43  - Trac currently using SQLite and Python 2.
     44  - Want to upgrade to MariaDB (MySQL) and Python 3.
     45  - Currently updating Toolshed to MariaDB.
     46
     47* NIAID progress report for new contract (not yet funded)
     48  * Eric
     49    - Uniprot or mmCIF residue numbering now supported.
     50    - Trying to get NIH 3D presets on toolshed, held up by Toolshed issues.
     51    - Then will get Philip to install presets bundle in NIH 3D pipeline.
     52    - Then will switch NIH 3D scripts to use presets, and make pull request with changes.
     53    - Next task is probably copy/combine GUIs
     54  * TomG
     55    - Gave VR demo to NIH VR special interest group organized by Jeremy Swan.
     56    - About 50 viewers including NASA and other non-NIH people.
     57    - Video on YouTube.
     58    - Showed two person VR with Phil Cruz.
     59    - One participant had funding and collaboration suggestions at end.
     60    - AlphaFold Database updated, to late January 3rd release, 1 million structures
     61    - AlphaFold update to 2.2.0 in ChimeraX Colab, Wynton and Minsky in visvault
     62    - New alphafold error plots advertised in video demo and on twitter and in SBGrid webinar.
     63  * Zach
     64    - Today's ChimeraX now handles Jason Rubensteins heart echo cardiogram (4D).
     65    - Jason sent two more 4D dicom datasets, ChimeraX only sees first time point.
     66    - TomG will try the first data set in VR since Jason was specifically interested in VR.
     67    - Jason has VR equipment
    1768
    1869= Action Items =