| | 17 | * NIAID contract |
| | 18 | - Scooter met with MSC, UCSF contract people, and Darrell to work out hourly contract. |
| | 19 | - Contract expected to start May 1 and last 10 months. |
| | 20 | - Will have monthly progress reports |
| | 21 | - Includes two 5 day trips for TomG to visit RML and Bethesda. |
| | 22 | |
| | 23 | * Computer security audit |
| | 24 | - UCSF assigned us a system administrator Nick to help with security upgrade tasks. |
| | 25 | |
| | 26 | * CGL email |
| | 27 | - UCSF IT wants to redirect all CGL email through ProofPoint cloud scanning service. |
| | 28 | - Would have 25 Mbyte message size limit, no Python attachments, URLs converted to go through urldefense. |
| | 29 | - This impairs our daily work, mailing list Python attachments, bug report email with large attachments. |
| | 30 | - UCSF IT said understands our special needs and is evaluating. |
| | 31 | - Sali lab email has already converted to ProofPoint scanning. |
| | 32 | - Greg says he sent Sali lab Python script attachment earlier but has not heard back. |
| | 33 | - Possibly in the future we may host Trac and mailing lists offsite (e.g. google groups). |
| | 34 | - Aim is to not disrupt current working systems and keep email functioning well. |
| | 35 | |
| | 36 | * Wynton BeeGFS |
| | 37 | - BeeGFS was patched yesterday and seems to have fixed stability problem. |
| | 38 | - Patch also seemed to give 25% speedup. |
| | 39 | |
| | 40 | * Trac |
| | 41 | - Fewer Trac corrupted database problems recently |
| | 42 | - BeeGFS file system problems may be the cause of those. |
| | 43 | - Trac currently using SQLite and Python 2. |
| | 44 | - Want to upgrade to MariaDB (MySQL) and Python 3. |
| | 45 | - Currently updating Toolshed to MariaDB. |
| | 46 | |
| | 47 | * NIAID progress report for new contract (not yet funded) |
| | 48 | * Eric |
| | 49 | - Uniprot or mmCIF residue numbering now supported. |
| | 50 | - Trying to get NIH 3D presets on toolshed, held up by Toolshed issues. |
| | 51 | - Then will get Philip to install presets bundle in NIH 3D pipeline. |
| | 52 | - Then will switch NIH 3D scripts to use presets, and make pull request with changes. |
| | 53 | - Next task is probably copy/combine GUIs |
| | 54 | * TomG |
| | 55 | - Gave VR demo to NIH VR special interest group organized by Jeremy Swan. |
| | 56 | - About 50 viewers including NASA and other non-NIH people. |
| | 57 | - Video on YouTube. |
| | 58 | - Showed two person VR with Phil Cruz. |
| | 59 | - One participant had funding and collaboration suggestions at end. |
| | 60 | - AlphaFold Database updated, to late January 3rd release, 1 million structures |
| | 61 | - AlphaFold update to 2.2.0 in ChimeraX Colab, Wynton and Minsky in visvault |
| | 62 | - New alphafold error plots advertised in video demo and on twitter and in SBGrid webinar. |
| | 63 | * Zach |
| | 64 | - Today's ChimeraX now handles Jason Rubensteins heart echo cardiogram (4D). |
| | 65 | - Jason sent two more 4D dicom datasets, ChimeraX only sees first time point. |
| | 66 | - TomG will try the first data set in VR since Jason was specifically interested in VR. |
| | 67 | - Jason has VR equipment |
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
