Changes between Version 1 and Version 2 of 2021-9-30

Timestamp:

Sep 30, 2021, 7:41:54 PM (4 years ago)

Author:

Tom Goddard

Comment:

--

2021-9-30

@@ -12 +12 @@
 = Discussion Notes =
 
+* Phenix R24 meeting recap
+  - Right before this meeting had monthly Phenix R24 meeting, TomF and TomG attended.
+  - Christopher Schlicksup gave demo of Phenix starting ChimeraX, showing map and model and selecting validation report residues.
+  - Phenix will have production release at end of October (once every 6 months).
+  - May try to get ChimeraX interaction into that Phenix release
+  - Interaction demo used pyro for communication and a ChimeraX client bundle.
+  - Oct Phenix release uses Python 2.7 but next release will use Python 3.7
+
+* 1.3 release branch and candidates
+  - Dates will be discussed in developer meeting later today.
+
+* Model cif format
+  - Tom Ferrin said RosettaFold models will be put on RCSB database using "model cif" which is same as AlphaFold format at EBI.
+  - AlphaFold database files are good compliant mmcif even referencing which mmcif dictionary is used.
+  - Seems model cif may just refer to mmCIF or some closely related dictionary.
+  - Models generated by AlphaFold code are only written in PDB format with just ATOM records.  mmCIF must have been created by EBI as a post-process.
+
+* macOS Monterey
+  - TomG tested ChimeraX and Chimera on macOS Monterey beta 8 -- working
+
+* AlphaFold on Wynton
+  - TomG has run AlphaFold on Wynton including queued jobs on GPU nodes.
+
 = Action Items =