Changes between Version 4 and Version 5 of 2021-12-16


Ignore:
Timestamp:
Dec 16, 2021, 4:47:52 PM (4 years ago)
Author:
Tom Goddard
Comment:

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  • 2021-12-16

    v4 v5  
    1414
    1515= Discussion Notes =
     16* Christmas card sent.
     17
     18* Java critical security log4j bug
     19  - Scooter dealing with Cytoscape and log4j 2 security vulnerability.
     20  - Our Apache servers don't use log4j.
     21  - TomCat uses log4j 1 which does not have plugin weakness.
     22  - Neo4j was vulnerable and Scooter patched it.
     23  - Chimera small molecule depiction service uses cdk library, does not have log4j.
     24
     25* Web services in ChimeraX using REST
     26  - Would like smiles to 2D depiction without CDK in ChimeraX.
     27  - Zach working on porting ChimeraX modeller to new web services (replacing opal).
     28  - Get all services working with ChimeraX, then look at backport to ChimeraX.
     29  - Everyone will have to run latest Chimera.
     30  - Zach is testing using webservicestest, then will move to production webservices.
     31
     32* Web services for Chimera
     33  - Chimera needs opal service to open mmcif and find ligand templates
     34  - Might just turn off Chimera services in a year
     35
     36* Web service status checking
     37  - Alphafold web services do status checking.
     38  - Have other ChimeraX web service check a status page on failure.
     39  - Get this into daily builds.
     40  - There is a 3 day wynton planned service in February.
     41    * Can have a static rbvi web site on cglbackup which will stay up during planned service (service is mostly for beegfs).
     42
     43* Security audit
     44  - We made many suggestions for corrections to audit report.
     45  - Who is taking responsibility to update audit report?
     46  - We can get draft audit report.
     47  - Scooter sent email to get a reply about requested changes.
     48
     49* Phenix R24 progress
     50  - Technical meeting was this morning, Eric, Zach, TomG attended
     51  - Added ChimeraX Phenix douse command (not yet in daily build), not using REST
     52  - Phenix nightly build is supposed to have Phenix REST server support tomorro
    1653
    1754= Action Items =
    1855
     56* Send xmas card to Conrad - TomG
     57* ~~Assign minsky.cgl.ucsf.edu hostname for AI machine - Greg, TomG
    1958* Setup meeting with NIH R01 program officer to discuss resubmission, Tom Ferrin
    2059* Get certificate for https at rbvi.org. Greg