Changes between Version 2 and Version 3 of 2018-10-08


Ignore:
Timestamp:
Oct 8, 2018, 1:33:36 PM (7 years ago)
Author:
Tom Goddard
Comment:

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  • 2018-10-08

    v2 v3  
    1717
    1818= Discussion =
    19 * Chimera 1.13.1
    20   * Changes include - fixing
    21     - proline rotamer
    22     - align chains
    23     - independent rotation in scenes
    24     - vina command argument documentation
    25     - vina command/gui inconsistency
    26     - local executables with whitespace in path
    27     - major addh bug
    28     - **macOS Mojave**
    29   * Linux installation instructions still inaccurate (installer name wrong, [http://plato.cgl.ucsf.edu/trac/chimera/ticket/16418 ticket])
    30   * Windows build failing with tk 8.6.8
     19* Chimera 1.13.1.
     20  * Using Tk 8.6.8 on Mac to fix buttons on Mojave.
     21  * Tk 8.6.8 won't run on Windows
     22    - Will use 8.6.4 on Windows
     23  * Still testing new Tk in daily build
     24  * ~~Linux installation instructions inaccurate (installer name wrong, [http://plato.cgl.ucsf.edu/trac/chimera/ticket/16418 ticket])
     25   
    3126* ChimeraX
    32   * Move to Python 3.7
    33     - No wheel for openmm ("coming soon")
    34     - Wait for Python 3.7.1
    35   * Need to move to PyQt5 5.11 (after Python 3.7) to get Vulkan support
    36     - Numerous problems with 5.11.3
    37       - Splash screen looks wrong
    38       - Does not track pane resizing between graphics and rapid access modes
    39       - Random crashes
    40     - Fall back to 5.9 until next release
     27  * Re-execution links in Log and "Save for demo"
     28    - Remove carriage returns from log
     29    - Add log context menu entry to make command links executable or go to documentation, default is documentation.
     30    - Remove "save for demo" log menu entry.  Save will use current state, reexecute or documentation.
     31  * Command history, what does it include?
     32    - Add context option to show only typed commands or all logged commands.
     33  * VR how-to demo with laptop and Samsung Odyssey headset
     34    - Hand-controller tracking position wrong, had to run Windows Mixed Reality setup to fix it.
     35    - Add docs for non-Vive headset use
     36    - Clicking log command link freezes vr
    4137  * Putting RBVI bundles on toolshed
    42     - Conrad working on toolshed to provide release/clean functionality via web pages/services
    43   * Documentation and tutorial strategy
    44     - Conrad will work on this after "putting RBVI bundles on toolshed"
    45     - Bundle-specific documentation should be placed into {{{docs}}} directory in package
    46     - Very rough proposal (Conrad)
    47       - Move all documentation into bundle {{{docs}}} directories
    48       - Change top-level docs directory to:
    49         * developer (manually edited docs)
    50         * user
    51           - non-bundle (manually edited docs, e.g., tutorials, indices, intro, etc.)
    52           - bundle (generated symlinks to bundle {{{docs}}} directories )
    53             * easier (web) access when editing
    54             * provide Makefile for git management, e.g., commit changes
    55       - ChimeraX documentation web pages on plato get updated as part of releasing a bundle
    56         * What about developer versions?
    57         * What about core documentation?  Is core a bundle on toolshed?  Can it really be updated through the toolshed?
     38    - Conrad showed toolshed rbvi bundle release page
     39    - Scooter says Cytoscape app store revamped recently, ChimeraX should use new Django code.
     40  * Installers for CentOS/Redhat
     41    - On hold until Chimera Tk issue resolved.
    5842
    5943= Action Items =
     44* Elaine will make tickets for log link behavior and command history behavior.
    6045* Conrad will create ticket listing stable APIs