| 19 | | * Chimera 1.13.1 |
| 20 | | * Changes include - fixing |
| 21 | | - proline rotamer |
| 22 | | - align chains |
| 23 | | - independent rotation in scenes |
| 24 | | - vina command argument documentation |
| 25 | | - vina command/gui inconsistency |
| 26 | | - local executables with whitespace in path |
| 27 | | - major addh bug |
| 28 | | - **macOS Mojave** |
| 29 | | * Linux installation instructions still inaccurate (installer name wrong, [http://plato.cgl.ucsf.edu/trac/chimera/ticket/16418 ticket]) |
| 30 | | * Windows build failing with tk 8.6.8 |
| | 19 | * Chimera 1.13.1. |
| | 20 | * Using Tk 8.6.8 on Mac to fix buttons on Mojave. |
| | 21 | * Tk 8.6.8 won't run on Windows |
| | 22 | - Will use 8.6.4 on Windows |
| | 23 | * Still testing new Tk in daily build |
| | 24 | * ~~Linux installation instructions inaccurate (installer name wrong, [http://plato.cgl.ucsf.edu/trac/chimera/ticket/16418 ticket]) |
| | 25 | |
| 32 | | * Move to Python 3.7 |
| 33 | | - No wheel for openmm ("coming soon") |
| 34 | | - Wait for Python 3.7.1 |
| 35 | | * Need to move to PyQt5 5.11 (after Python 3.7) to get Vulkan support |
| 36 | | - Numerous problems with 5.11.3 |
| 37 | | - Splash screen looks wrong |
| 38 | | - Does not track pane resizing between graphics and rapid access modes |
| 39 | | - Random crashes |
| 40 | | - Fall back to 5.9 until next release |
| | 27 | * Re-execution links in Log and "Save for demo" |
| | 28 | - Remove carriage returns from log |
| | 29 | - Add log context menu entry to make command links executable or go to documentation, default is documentation. |
| | 30 | - Remove "save for demo" log menu entry. Save will use current state, reexecute or documentation. |
| | 31 | * Command history, what does it include? |
| | 32 | - Add context option to show only typed commands or all logged commands. |
| | 33 | * VR how-to demo with laptop and Samsung Odyssey headset |
| | 34 | - Hand-controller tracking position wrong, had to run Windows Mixed Reality setup to fix it. |
| | 35 | - Add docs for non-Vive headset use |
| | 36 | - Clicking log command link freezes vr |
| 42 | | - Conrad working on toolshed to provide release/clean functionality via web pages/services |
| 43 | | * Documentation and tutorial strategy |
| 44 | | - Conrad will work on this after "putting RBVI bundles on toolshed" |
| 45 | | - Bundle-specific documentation should be placed into {{{docs}}} directory in package |
| 46 | | - Very rough proposal (Conrad) |
| 47 | | - Move all documentation into bundle {{{docs}}} directories |
| 48 | | - Change top-level docs directory to: |
| 49 | | * developer (manually edited docs) |
| 50 | | * user |
| 51 | | - non-bundle (manually edited docs, e.g., tutorials, indices, intro, etc.) |
| 52 | | - bundle (generated symlinks to bundle {{{docs}}} directories ) |
| 53 | | * easier (web) access when editing |
| 54 | | * provide Makefile for git management, e.g., commit changes |
| 55 | | - ChimeraX documentation web pages on plato get updated as part of releasing a bundle |
| 56 | | * What about developer versions? |
| 57 | | * What about core documentation? Is core a bundle on toolshed? Can it really be updated through the toolshed? |
| | 38 | - Conrad showed toolshed rbvi bundle release page |
| | 39 | - Scooter says Cytoscape app store revamped recently, ChimeraX should use new Django code. |
| | 40 | * Installers for CentOS/Redhat |
| | 41 | - On hold until Chimera Tk issue resolved. |