Changes between Initial Version and Version 1 of 2018-06-07


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Timestamp:
Jun 7, 2018, 3:21:52 PM (7 years ago)
Author:
Conrad Huang
Comment:

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  • 2018-06-07

    v1 v1  
     1= Attendees =
     2
     3* Eric, Greg, TomF, TomG, Elaine, Conrad
     4
     5= Agenda =
     6* Action items
     7* Chimera 1.13 release
     8* ChimeraX
     9  * Documentation and tutorial strategy
     10  * Testing
     11  * Initial display and nucleic acid coloring
     12  * Linux installers
     13  * Release 0.7
     14   - Review [https://www.rbvi.ucsf.edu/trac/ChimeraX/query?status=feedback&status=reopened&status=assigned&status=new&status=accepted&group=status&milestone=0.7 milestone priorities]
     15  * Wildcard/regex/case matching in commands
     16  * What to show in log when opening model?  Citation? Title? ticket #1030
     17
     18= Discussion =
     19* Chimera 1.13
     20  * Wait 3 weeks for feedback
     21  * Target June 22 for release
     22* ChimeraX
     23  * Documentation and tutorial strategy
     24    - Bundle-specific documentation should be placed into {{{docs}}} directory in package
     25    - Do we want to reorganize how documentation is stored, both for bundle-specific and general (e.g., tutorials)
     26    - Bundle-specific documentation should be kept in bundle
     27  * Testing
     28    - All bundles have a "make test" target which runs test*.cxc and test*.py
     29    - There should be at least "test.cxc" for testing commands to detect simple errors like syntax errors
     30    - Nightly builds will call "make test" after completing build
     31      - possible outcomes: no errors, build okay/test failed, build failed
     32      - latter two should have links to build output
     33  * Initial display
     34    - Simpler, more stylized or more detailed initial representations?
     35    - How many residue-count levels should there be?
     36    - Below a certain threshold, models are "small molecules"
     37    - Two level initial display of nucleotides styles: all atoms (with filled rings when available), and ladder. Assumption is that we will also develop some UI (auto-displayed tool or set of toolbar buttons) to make it easier for user to change from default style.
     38    - See #1157
     39  * Nucleotide colors, see #1156
     40  * Linux installers for ChimeraX
     41    - Greg is working on Debian (apt-get, deb) packaging
     42    - Make "rpm" and "apt-get" with dependencies
     43      - Check for available dependent packages on CentOS 7, Fedora 28, Ubuntu 16.04 and 18.04
     44    - Also make tar file for ~~desperate~~ independently minded users
     45
     46= Action Items =
     47* Conrad and Greg will figure out how to organize documentation so that the primary copy stays in bundles but editing is not too cumbersome
     48* Conrad will create ticket listing stable APIs
     49* ~~Done: Conrad will close finished tickets
     50* ~~Greg will create Chimera 1.13 candidate release
     51* ~~Done: #1150 Conrad will create ticket for searching documentation
     52* ~~Conrad will document bundle documentation location in tutorials
     53* Conrad will edit bundle code tutorial
     54* Conrad will continue working on ribbon tickets