Attendees

• Elaine, Greg, Eric, TomG, TomF, Conrad

Agenda

• Cython and tinyarray
• Documentation and tutorial status
• mmCIF output
• Import hook
• Review ​milestone priorities
• Wildcard/regex/case matching in commands
• What to show in log when opening model? Citation? Title? ticket #1030

Discussion

• Cython and tinyarray
  • See New Results section from ​previous meeting
  • Phase 1: implement Cython change
    • Only Atom and Element are being moved to Cython
    • Element works on Eric's machine but is being made more general
    • Atom still needs to be completed
  • Phase 2: drop in tinyarray for singletons (colors, transformations, coordinates) (To do)
    • Add command line option to fall back to numpy
    • Run for a while to see what breaks
• mmCIF output
  • What tables are we outputting?
    • Greg will write a technical document describing what is being output
    • Elaine will reference that from user documentation
  • What does current output work with?
    • Try out RCSB validation?
    • PyMOL, Rasmol work
    • JSMol does not show secondary structure
    • COOT, CCP4mg will be tested
    • Asked Tristan to test with PHENIX
• Documentation and tutorial status
  • class_munger.py will munge class names to hide submodules
  • Working on checking docstrings for "Supported API".
  • For docstrings without API status, insert "Experimental API subject to change."
  • Tutorial sphinx links all work.
  • Need to make sure all used methods and properties are documented.
• Import hook
  • from chimerax.ui import something
  • import-hook docs are similar in complexity with metaclasses
• Review milestone priorities

Action Items

• Everyone update milestones that should be punted to 0.7
• Conrad will write bundle code tutorial
• Conrad will continue working on ribbon tickets