Changes between Initial Version and Version 1 of 2018-03-08


Ignore:
Timestamp:
Mar 8, 2018, 2:41:24 PM (8 years ago)
Author:
Conrad Huang
Comment:

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  • 2018-03-08

    v1 v1  
     1= Attendees =
     2
     3* Elaine, Greg, Eric, TomG, TomF, Conrad
     4
     5= Agenda =
     6* Cython and tinyarray
     7* Documentation and tutorial status
     8* mmCIF output
     9* Import hook
     10* Review [https://www.rbvi.ucsf.edu/trac/ChimeraX/query?status=feedback&status=reopened&status=assigned&status=new&status=accepted&group=status&milestone=0.6 milestone priorities]
     11* Wildcard/regex/case matching in commands
     12* What to show in log when opening model?  Citation? Title?
     13
     14= Discussion =
     15* Cython and tinyarray
     16  - See New Results section from ​[wiki:2018-01-25 previous meeting]
     17  - Phase 1: implement Cython change
     18    - Only Atom and Element are being moved to Cython
     19    - Element works on Eric's machine but is being made more general
     20    - Atom still needs to be completed
     21  - Phase 2: drop in tinyarray for singletons (colors, transformations, coordinates) (To do)
     22    - Add command line option to fall back to numpy
     23    - Run for a while to see what breaks
     24* mmCIF output
     25  - What tables are we outputting?
     26    - Greg will write a technical document describing what is being output
     27    - Elaine will reference that from user documentation
     28  - What does current output work with?
     29    - Try out RCSB validation?
     30    - PyMOL, Rasmol work
     31    - JSMol does not show secondary structure
     32    - COOT, CCP4mg will be tested
     33    - Asked Tristan to test with PHENIX
     34* Documentation and tutorial status
     35  - class_munger.py will munge class names to hide submodules
     36  - Working on checking docstrings for "Supported API".
     37  - For docstrings without API status, insert "Experimental API subject to change."
     38  - Tutorial sphinx links all work.
     39  - Need to make sure all used methods and properties are documented.
     40* Import hook
     41  - {{{from chimerax.ui import something}}}
     42  - import-hook docs are similar in complexity with metaclasses
     43* Review milestone priorities
     44
     45= Action Items =
     46* Everyone update milestones that should be punted to 0.7
     47* Conrad will write bundle code tutorial
     48* Conrad will continue working on ribbon tickets