Changes between Version 19 and Version 20 of 2018-01-25

Timestamp:

Feb 7, 2018, 1:42:18 PM (8 years ago)

Author:

Eric Pettersen

Comment:

--

2018-01-25

@@ -38 +38 @@
      - returning tuple '''0.103s'''
    - Cythonize '''Atom''' (2ajq; 14791 atoms; ''contacts'': chain A against others)
-    - addh '''9.3% faster''' (22.21s -> 20.14s)
-    - hbonds '''3.3% faster''' (3.44s -> 3.30s)
-    - contacts '''25.0% faster''' (0.444s -> 0.333s)
+    - addh '''1.1x faster''' (22.21s -> 20.14s)
+    - hbonds '''1.04x faster''' (3.44s -> 3.30s)
+    - contacts '''1.3x faster''' (0.444s -> 0.333s)
    - Cythonize '''Atom''' + '''Element'''
-    - addh '''29.3% faster''' (22.21s -> 15.71s) [C1: 8.68s]
-    - hbonds '''18.3% faster''' (3.44s -> 2.81s) [C1: 3.04s]
-    - contacts '''43.0% faster''' (0.444s -> 0.253s) [C1: 0.216s]
+    - addh '''1.4x faster''' (22.21s -> 15.71s)
+    - hbonds '''1.2x faster''' (3.44s -> 2.81s)
+    - contacts '''1.8x faster''' (0.444s -> 0.253s)
+   - Cythonize '''Atom''' + '''Element''' and use '''tinyarray'''
+    - addh '''1.8x faster''' (22.21s -> 12.63s) [C1: 8.68s]
+    - hbonds '''1.3x faster''' (3.44s -> 2.64s) [C1: 3.04s]
+    - contacts '''2.1x faster''' (0.444s -> 0.211s) [C1: 0.216s]
    - Cythonize Atom methods? function: '''0.074s'''; method: '''0.204s'''; prop: '''0.135s'''
    - Cythonize hydrogen bond code?  How hard is this?