| | 1 | = Attendees = |
| | 2 | |
| | 3 | Conrad, Elaine, Eric, Greg, Scooter, TomF |
| | 4 | |
| | 5 | = Agenda = |
| | 6 | * ChimeraX public pre-release |
| | 7 | * Cache behavior |
| | 8 | * Mac distribution method |
| | 9 | * Linux distribution method |
| | 10 | * Download URL |
| | 11 | * Compiling source packages |
| | 12 | * Best strategy on how to update pypi dependencies |
| | 13 | * Chimera 1 update |
| | 14 | * New EDS URL |
| | 15 | * New (to us) Dunbrack rotamer library |
| | 16 | |
| | 17 | = Discussion = |
| | 18 | * ChimeraX pre-release |
| | 19 | * ~~Cache behavior |
| | 20 | - CCD cache location should be documented and managed manually |
| | 21 | - No mechanism (for now) for checking whether cached file is up to date |
| | 22 | * ~~Mac distribution method |
| | 23 | - TomG will take a look at why dragging from dmg results in app failure on first open |
| | 24 | - TomG will update the dmg compression method |
| | 25 | * ~~Linux distribution method |
| | 26 | - Sticking with .tar.gz |
| | 27 | - Greg will see if any libraries are missing for CentOS 7 |
| | 28 | * ~~chimerax-users@cgl.ucsf.edu will be separate from chimera-users@cgl.ucsf.edu |
| | 29 | * Download URL |
| | 30 | - Elaine will push preview changes to www |
| | 31 | * Best strategy on how to update pypi dependencies |
| | 32 | * Greg changed install command so that updates will not be installed if sufficiently new package is already installed |
| | 33 | * Test new package versions periodically. What is the easiest way of doing this? Get list of updated packages weekly. |
| | 34 | * Change all >= to == now |
| | 35 | * Chimera 1 update |
| | 36 | |
| | 37 | == Action Items == |
| | 38 | * ~~TomG will look into Mac distribution method |
| | 39 | * ~~Conrad will create ChimeraX users mailing list |
| | 40 | * ~~Elaine will create feedback page to reference mailing list once it is made |
| | 41 | * ~~Eric will add Help->Contact Us menu item |
| | 42 | * ~~Conrad will make symlink from /download.html to /docs/download/chimerax.html |
| | 43 | * ~~Eric will change dependencies from >= to == |
| | 44 | * Greg will write a script to identify pypi updated packages weekly |
| | 45 | * Greg will identify libraries missing from CentOS 7 |
| | 46 | * Elaine will push download URL to www |
| | 47 | |
| | 48 | == Alpha-release features remaining to be completed (from site visit presentation) == |
| | 49 | * ~~Clean up cache directories (too many of 'em as it stands) |
| | 50 | * Sequences and alignments |
| | 51 | * Saving and restoring sessions |
| | 52 | * Hydrogen bond finder |
| | 53 | * Full Toolshed semantics |
| | 54 | * More cartoon fixes |
| | 55 | |
| | 56 | == Additional alpha-release possible features == |
| | 57 | |
| | 58 | * Write PDB format |
| | 59 | * Improved writing of mmCIF format |
| | 60 | |
| | 61 | == High priority tickets for alpha-release == |
| | 62 | * #473 Create Linux installer and distribute necessary system libraries. Greg |
| | 63 | * #469 HTML link to open local file should be interpreted relative to HTML file location. Greg |
| | 64 | |
| | 65 | == Medium priority tickets for alpha-release == |
| | 66 | * ~~#472 ChimeraX "open" command format-specification issues. Greg |
| | 67 | * #418 problems with help command new-viewer option. Greg |
| | 68 | * #412 Fails to start on Mac with comma in app name. Conrad |
| | 69 | * #370 links from Help viewer to external pages give traceback in Qt version. Greg |
| | 70 | * #235 Compressed session files should have suffix .cxs instead of .cxs.gz. Greg |
| | 71 | * #69 Atom spec parsing does not preserve model or chain order. Conrad |
| | 72 | |
| | 73 | == Low priority tickets for alpha-release == |
| | 74 | * ~~#449 Volume planes on multiple data display is erratic. TomG |
| | 75 | * ~~#447 Transparency command on volumes undone when contour level changes. TomG |
| | 76 | * #417 Help viewer suggestions. Greg |
| | 77 | * #367 Error after deleting all atoms. Eric |
| | 78 | * ~~#299 Ability to add tool-specific keywords to open command. Greg |
| | 79 | * #236 Saving a session with an unknown model type gives an error. Greg |
| | 80 | * #439 Fix signing of Windows installers. Conrad |
| | 81 | * ~~#502 Findclash misleading and wrong. Conrad |
| | 82 | |
| | 83 | == More discussion needed == |
| | 84 | * #342 Convert from cxhelp/cxcmd schemes to http scheme. Conrad |
| | 85 | * #259 Tools should not save in sessions by default. Greg |
| | 86 | * #251 Session save/restore slow. Greg |
| | 87 | * #61 Rendering takes minutes, Mac Nvidia Geforce GT 330M graphics. TomG |
| | 88 | |
| | 89 | == Check and close == |
| | 90 | * ~~#411 Copyright messes up Mac installer html. Conrad |
| | 91 | * #378 Atom spec parsing stops at non-whitespace. Conrad |
| | 92 | * ~~#327 Log stops updating beyond 2 Mbyte size. TomG |
| | 93 | * ~~#318 Colourlovers palette message logged above command. TomG |
| | 94 | * #284 handle mmCIF with missing sequence information. Greg |
| | 95 | * #283 Curved helix tubes. Conrad |
| | 96 | * ~~#239 File... Save GUI save image adds ".cxs" before image suffix. Greg |
| | 97 | * ~~#214 Save image dialog bitrot. Conrad |
| | 98 | * #198 finish session molecular data save/restore. Conrad |
| | 99 | * ~~#150 Ribbon slow creation. Conrad |
| | 100 | * #140 Provide common database fetching routines. Greg |
| | 101 | * ~~#70 log tool doesn't cleanup when deleted. Eric |
| | 102 | * #62 Register file fetch using database name. Greg |
| | 103 | * ~~#49 Better warning message if oculus fails to start. TomG |
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
