Changes between Initial Version and Version 1 of 2016-09-15


Ignore:
Timestamp:
Sep 15, 2016, 4:07:29 PM (9 years ago)
Author:
Conrad Huang
Comment:

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  • 2016-09-15

    v1 v1  
     1= Attendees =
     2
     3  Elaine, Eric, Greg, Conrad, TomG, TomF
     4
     5= Agenda =
     6  * Review action items from last meeting
     7  * Chimera 1.11.1 release
     8  * ChimeraX issues
     9    * Metadata for tools/bundles
     10      * Get toolshed/session-init funcs out of !__init!__?
     11  * Assign required site-visit functionality to people
     12  * Continuation of 8-29 discussion
     13
     14= Discussion =
     15  * Previous action items:
     16    * Conrad '''will''' make http reference in ChimeraX About panel into hyperlink
     17    * Greg and TomG '''will''' investigate how "sym" command uses instancing and how it is reflected in x3d output
     18  * Chimera 1.11.1 release
     19    * Candidate releases are up except for 32-bit Windows
     20    * Need to implement fix for blastpdb before final 1.11.1
     21      - Fix by replacing Opal script for BlastProtein service with shell script that displays error message and exit with status 1
     22      - 1.11.1 will use BlastProtein2 as service name
     23      - Major change in nr format deflines
     24      - Wait until after general fix for blast on plato
     25      - Test if MDA is compatible with newest blast version
     26  * ChimeraX issues
     27    * Ribbon progress
     28      * Lots of stuff on Elaine's documentation page
     29      * Conrad ported some standalone helix code into ChimeraX but needs to complete it
     30    * Investigate protein h-bonds/ss-bonds in mmCIF
     31      * Only protein h-bonds are sheet h-bonds, no helix or general h-bonds
     32    * Display DSSP h-bonds for comparison with other sources (e.g., FindHBond)
     33      * DSSP only cares about h-bonds involving backbone, no sidechain-only h-bonds
     34      * May be useful for 3D printing
     35      * Low priority for now
     36    * Metadata for tools/bundles
     37      * Change in tool/bundle template
     38        * Greg showed new classifier format
     39        * For UI purposes, there is no API for GUI options in open or save panel for bundles for now
     40        * For extra open/save arguments, register them in custom initialization function
     41      * Get toolshed/session-init funcs out of !__init!__?
     42        * Create a Bundle class and put Bundle API methods in instance with standard name in !__init!__
     43  * Assign required site-visit functionality to people
     44    * Cytoscape and REST interface (Conrad, Scooter)
     45    * ~~Side view on PyQt (Greg)
     46    * Toolshed (Conrad, Greg)
     47    * Ribbons (Conrad)
     48    * IHM cross-link distribution histograms (TomG)
     49    * Chain contact graph (TomG)
     50    * Domains
     51      * Web service, Uniprot? (Eric)
     52      * Integration into hierarchy (Eric)
     53      * Interactive 2D graph (team)
     54    * IHM mmCIF support (TomG)
     55    * -----
     56    * String database (Scooter, Conrad)
     57    * Hydrogen bonds and contacts (Eric)
     58    * MAV (Eric)
     59    * Link to NGL, LiteMol (Scooter, Conrad, Greg)
     60    * Molprobity on Opal (Scooter)
     61    * UI cleanup (team)
     62  * Continuation of 8-29 discussion
     63    * Conrad presented Scooter's vision of UI (took an extra hour)
     64    * Split "Assembly" into top-level "Data source" and "assembly"
     65    * TomG and Conrad are looking into prototypes/mockups for more experience
     66
     67= Outstanding Action Items =
     68  * Conrad will make http reference in ChimeraX About panel into hyperlink
     69  * Greg and TomG will investigate how "sym" command uses instancing
     70  * Conrad will make sure that template tools directory is exempt from copyright updates