Changes between Initial Version and Version 1 of 2016-08-29


Ignore:
Timestamp:
Sep 1, 2016, 1:37:21 PM (9 years ago)
Author:
Tom Ferrin
Comment:

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  • 2016-08-29

    v1 v1  
     1= Attendees =
     2
     3   Conrad, Elaine, TomG, Greg, Eric, Scooter, TomF
     4
     5= Agenda =
     6  * Demo by TomG of CRISPR, Ribosome and NPC structures as examples of complex assemblies (see [http://www.rbvi.ucsf.edu/chimera/data/hierarchy-aug2016/hierarchy.html Data hierarchy and groupings] slide
     7  * Discuss what entities are necessary and what their relationships are
     8
     9= Discussion =
     10  * List of basic entities:
     11    - Assembly
     12    - Volume
     13    - Protein
     14    - Nucleic Acid
     15    - Chain
     16    - Domain
     17    - Helix
     18    - Sheet
     19    - Solvent
     20    - Ion
     21    - Metal
     22    - Crosslink (aka pseudo-bond)
     23    - H-bond
     24    - Missing segment
     25
     26  * List of computed, predefined, or user defined entities/groups
     27    - Surface
     28    - Active Site
     29    - Axes
     30    - Centroid
     31    - Planes
     32    - Ellipsoids
     33
     34  * Hierarchical relationships:
     35    - Assembly
     36      - Chain
     37        - Domain
     38        - Helix
     39        - Strand
     40        - Sheet
     41        - Missing Segment
     42        - <Sequence>
     43        - *
     44      - Protein*
     45      - Nucleic Acid*
     46      - Ligand*
     47      - Ion/Metal*
     48      - Solvent*
     49      - Crosslinks
     50      - H-bonds
     51      - Volume
     52      - Sheet
     53      - Coarse Grained Model
     54      - Assembly
     55      - *
     56
     57