Changes between Version 1 and Version 2 of 2016-08-25

Timestamp:

Aug 25, 2016, 3:05:24 PM (9 years ago)

Author:

Conrad Huang

Comment:

--

2016-08-25

@@ -7 +7 @@
   * Chimera 1.11.1 release
   * ChimeraX issues
-  * Meghan issue
+  * Meghan issues
+  * Assign required site-visit functionality to people
   * Should GUIs, e.g., model panel,
     - log command equivalents (sometimes difficult)
@@ -18 +19 @@
     * !PyQt (commercial version) is now the default window system, wx is NOT included
     * Click-through license for non-commercial ChimeraX is almost working
-    * We will create "Software Used in ChimeraX" page of actually used packages and add reference from documentation
-      - When possible, include links to software license page instead of complete license text
   * Chimera 1.11.1 release
-    * Need to bring license changes from trunk to 1.11
-      * Elaine will bring them from trunk to 1.11 for 1.11.1 release
-    * Start 1.11.1 candidate release on Monday
+    * Start 1.11.1 candidate release on Thursday
+    * Eric got his fixes in
   * ChimeraX issues
    * Ribbon progress
@@ -30 +28 @@
     * Conrad is still working on curved (arc) strands
    * Middle-mouse drag does not work right with PyQt5.7 on the Mac
-    * Middle-mouse drag is a Mac issue.  Works on Windows and Linux.
-    * Eric will check whether the problem has been reported in PyQt/Qt lists
+    * Reported fixed in PyQt/Qt lists
       * Relevant page: https://codereview.qt-project.org/#/c/151407/
    * X3D export
-    * Cylinders work
-    * View point, background color are included
+    * Binary XML standard is out but no Python implementation
+      * Ask Seva (Meghan's group) about how they use it
+      * Suspend for now, pending new binary XML standard
+      * Cobweb does NOT handle binary XML
     * Textures are not included
     * Want instancing to reduce output size
@@ -42 +41 @@
     * [http://www.cgl.ucsf.edu/home/gregc/nih-15Aug16/ 1gcn examples]
     * To be done:
-      * Binary x3d
+      * ~~Binary x3d
       * Triangle masks
+      * -- Low priority --
       * Instancing for geometry
       * Check performance of X3D viewers before next two items
       * Single HTML file with both viewer and model information
       * Generating shims (e.g., cobweb)
-      * -- Lower priority --
       * Meshes
       * Lighting and material
       * Clip planes
       * Text
-   * Need to port side view to PyQt
   * Meghan issues
     * Harvest protein h-bonds from mmCIF
@@ -59 +57 @@
     * Struts vs h-bonds, which subset of h-bonds/ss-bonds to use
     * TomF will get presentation and discuss with Meghan
+  * Assign required site-visit functionality to people
+    * Cytoscape and REST interface (Conrad, Scooter)
+    * Side view on PyQt (Greg)
+    * Toolshed (Conrad, Greg)
+    * Ribbons (Conrad)
+    * IHM cross-link distribution histograms (TomG)
+    * Chain contact graph (TomG)
+    * Domains
+      * Web service, Uniprot? (Eric)
+      * Integration into hierarchy (Eric)
+      * Interactive 2D graph (team)
+    * IHM mmCIF support (TBD)
+    * -----
+    * String database (Scooter, Conrad)
+    * Hydrogen bonds and contacts (Eric)
+    * MAV (Eric)
+    * Link to NGL, LiteMol (Scooter, Conrad, Greg)
+    * Molprobity on Opal (Scooter)
+    * UI cleanup (team)
   * Should GUIs, e.g., model panel log stuff?
-    * Yes.
+    * One-off action: log.
+    * Discrete action in ongoing dialog: log.
     * Do it now for "obvious" panels like Save Dialog
+    * Do we act-and-log or generate-command-and-execute?
 
 = Outstanding Action Items =
@@ -69 +88 @@
    1. ~~Greg will include !PyQt in daily builds
    1. Conrad will implement click-through license
-   1. Greg will create embedded software list
-   1. Greg will find a prereq package that requires a copy of the license to be included but does not install it with the software
+   1. Greg will create embedded software page with links (only)
+   1. ~~Greg will find a prereq package that requires a copy of the license to be included but does not install it with the software