Changes between Version 1 and Version 2 of 2016-03-03


Ignore:
Timestamp:
Mar 3, 2016, 3:33:29 PM (10 years ago)
Author:
Conrad Huang
Comment:

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  • 2016-03-03

    v1 v2  
    88  * Discuss 1.11 release
    99  * mmCIF support effort, Phenix and COOT
    10   * New session restore API
     10  * ~~New session restore API
    1111  * What themes/scenarios are we using for advisory committee?
    1212  * What is the definition of "model"? (Eric)
     
    1616   * Waiting on Andreas for documentation
    1717  * mmCIF support effort, Phenix and COOT
    18    * PDB asks for large files in mmCIF file using Phenix or CCP4.  mmCIF from Phenix is first generated and then post-processed into acceptable submission form.  Get Oliver to run the Phenix standalone program?  (TomG)  Also ask about CCP4 and RefMac mmCIF output.
    19    * Post-processed mmCIF output from Phenix (courtesy Oliver) opens in ChimeraX.  Uses separate data sections for residue templates.  ChimeraX currently scans but does not use the residue templates in the file.  The added sequence table made ChimeraX work properly.  Oliver had to supply a sequence file for the Phenix post-processor.
     18   * ~~PDB asks for large files in mmCIF file using Phenix or CCP4.  mmCIF from Phenix is first generated and then post-processed into acceptable submission form.  Get Oliver to run the Phenix standalone program?  (TomG)  Also ask about CCP4 and RefMac mmCIF output.
     19   * ~~Post-processed mmCIF output from Phenix (courtesy Oliver) opens in ChimeraX.  Uses separate data sections for residue templates.  ChimeraX currently scans but does not use the residue templates in the file.  The added sequence table made ChimeraX work properly.  Oliver had to supply a sequence file for the Phenix post-processor.
     20   * AdCo demo segments
     21     - 2 segments for TR&D 1&2
     22     - First more feature-based
     23     - Second more new-data-types
    2024
    2125= Outstanding Action Items =
    2226  * Friends and Family bugs outstanding
     27   * Interactive side view elements (Greg)
    2328   * Ribbon flips too often (Conrad)
    2429    * Will try out "no orientation atom" method
    2530   * Stretch goals
    26     * Side view elements displays but need to make interactive (Greg)
    2731    * Finish mmCIF NMR structure support, need to copy secondary structure data to all models (Greg)
    2832    * Figure out and fix Mac OS X runtime linking bug (TomG/Greg/Conrad)
     
    3943  * TomG is going to Phenix meeting
    4044   * TomG will talk to other developers at Phenix meeting regarding whether entity_poly_seq is optional.
    41    * Greg will provide a [https://www.rbvi.ucsf.edu/home/gregc/mmcif.html list of mmCIF issues] for TomG to take to the meeting.
     45   * Provide a [https://www.rbvi.ucsf.edu/home/gregc/mmcif.html list of mmCIF issues] for TomG to take to the meeting
    4246     - Edit to replace "deficiency" with "issue"
    4347     - Prioritize topics
     48     - Put into wiki page