Changes between Version 1 and Version 2 of 2016-03-03
- Timestamp:
- Mar 3, 2016, 3:33:29 PM (10 years ago)
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2016-03-03
v1 v2 8 8 * Discuss 1.11 release 9 9 * mmCIF support effort, Phenix and COOT 10 * New session restore API10 * ~~New session restore API 11 11 * What themes/scenarios are we using for advisory committee? 12 12 * What is the definition of "model"? (Eric) … … 16 16 * Waiting on Andreas for documentation 17 17 * mmCIF support effort, Phenix and COOT 18 * PDB asks for large files in mmCIF file using Phenix or CCP4. mmCIF from Phenix is first generated and then post-processed into acceptable submission form. Get Oliver to run the Phenix standalone program? (TomG) Also ask about CCP4 and RefMac mmCIF output. 19 * Post-processed mmCIF output from Phenix (courtesy Oliver) opens in ChimeraX. Uses separate data sections for residue templates. ChimeraX currently scans but does not use the residue templates in the file. The added sequence table made ChimeraX work properly. Oliver had to supply a sequence file for the Phenix post-processor. 18 * ~~PDB asks for large files in mmCIF file using Phenix or CCP4. mmCIF from Phenix is first generated and then post-processed into acceptable submission form. Get Oliver to run the Phenix standalone program? (TomG) Also ask about CCP4 and RefMac mmCIF output. 19 * ~~Post-processed mmCIF output from Phenix (courtesy Oliver) opens in ChimeraX. Uses separate data sections for residue templates. ChimeraX currently scans but does not use the residue templates in the file. The added sequence table made ChimeraX work properly. Oliver had to supply a sequence file for the Phenix post-processor. 20 * AdCo demo segments 21 - 2 segments for TR&D 1&2 22 - First more feature-based 23 - Second more new-data-types 20 24 21 25 = Outstanding Action Items = 22 26 * Friends and Family bugs outstanding 27 * Interactive side view elements (Greg) 23 28 * Ribbon flips too often (Conrad) 24 29 * Will try out "no orientation atom" method 25 30 * Stretch goals 26 * Side view elements displays but need to make interactive (Greg)27 31 * Finish mmCIF NMR structure support, need to copy secondary structure data to all models (Greg) 28 32 * Figure out and fix Mac OS X runtime linking bug (TomG/Greg/Conrad) … … 39 43 * TomG is going to Phenix meeting 40 44 * TomG will talk to other developers at Phenix meeting regarding whether entity_poly_seq is optional. 41 * Greg will provide a [https://www.rbvi.ucsf.edu/home/gregc/mmcif.html list of mmCIF issues] for TomG to take to the meeting.45 * Provide a [https://www.rbvi.ucsf.edu/home/gregc/mmcif.html list of mmCIF issues] for TomG to take to the meeting 42 46 - Edit to replace "deficiency" with "issue" 43 47 - Prioritize topics 48 - Put into wiki page