Changes between Version 5 and Version 6 of 2016-02-18

Timestamp:

Feb 18, 2016, 3:25:59 PM (10 years ago)

Author:

Conrad Huang

Comment:

--

2016-02-18

@@ -23 +23 @@
   * Send out Chimera stereo announcement to chimera-users (Elaine)
   * Need proposal for new restore API (ChimeraX team, TomG lead) to simplify writing session restore code for developers
-  *
+  * mmCIF files from Oliver did not work
+   * Phenix mmCIF is missing entity_polyseq table that specifies SEQRES-equivalent information. Need to guess at what residues are connected and where chain breaks appear.
+   * COOT dumps a PDB file into an mmCIF atom_site table.  No entity_polyseq table.  All atoms in same entity with duplicate values in several fields.  Works fine in COOT, Phenix and PyMol according to Oliver.
+   * PDB asks for large files in mmCIF file using Phenix or CCP4.  mmCIF from Phenix is first generated and then post-processed into acceptable submission form.  Get Oliver to run the Phenix standalone program?  (TomG)  Also ask about CCP4 and RefMac mmCIF output.
 
 = Outstanding Action Items =