Attendees

Elaine, Eric, Greg, TomF, TomG, Conrad, Scooter

Agenda

• Review action items from last meeting
• Qt status
• Notify Oliver Clarke about ChimeraX?
• Phenix
• Symmetry web service - need documented API
• Discuss 1.11 release
• ChimeraX home page (​http://preview.cgl.ucsf.edu/chimerax/preview/htdocs/, ​http://preview.cgl.ucsf.edu/chimerax/docs/download/chimerax.html)
• Chimera stereo announcement (​UCSF Chimera Documentation Index)

Next week agenda items

• Change session restore API so objects constructed in normal Python fashion rather than separating new and init. Needed to make it easy for outside developers (TomG)

Discussion

• Qt status
  • Looking good. Don't click on the hyperlinks
• Oliver Clarke
  • Defer until ribbon flipping is resolved
• Phenix
  • TomG figured out XMLRPC between Phenix and COOT/PyMol
  • Add ChimeraX button in Phenix to show progress
  • Build custom ChimeraX tool that invokes Phenix tools/protocols?
  • Talk to Yifan, Agard, others students who use ChimeraX and possibly Phenix to define what functionality to provide
• Symmetry web service - need documented API
  • Waiting on Andreas for documentation
• Chimera 1.11
  • Pending Tk 8.6.5- builds
• ChimeraX home page (Scooter)
  • preview.rbvi.ucsf.edu/chimerax -> home page, svn version
  • preview.rbvi.ucsf.edu/chimerax/docs/download/chimerax.html -> download page, unpublished
  • www.rbvi.ucsf.edu/chimerax -> home page, pushed version
• Chimera stereo announcement
  • Put full announcement on hardware page (Conrad)
  • Send abbreviated message to chimera-users (Conrad, Elaine)

Outstanding Action Items

• Friends and Family bugs outstanding
  • Ribbon not shown for 1m4x (Conrad)
  • No ribbon for 3j3q takes >2s to compute (Conrad)
  • Ribbon flips too often (Conrad)
    • Will try out "no orientation atom" method
  • Stretch goals
    • Side view elements displays but need to make interactive (Greg)
    • Save global pseudobond manager in sessions (Eric)
    • Finish mmCIF NMR structure support, need to copy secondary structure data to all models (Greg)
    • Figure out and fix Mac OS X runtime linking bug (TomG/Greg/Conrad)
    • Check executables and dynamic libraries to make sure they only reference internal or standard libraries (Greg)
    • Save molecular surfaces in sessions (TomG)
• Chimera 1.11 release:
  • Build with Tk 8.6.5- in daily build (​ticket 14424)
    • Mac - balloons not working quite right
    • Windows - needs to build
    • Linux - need to be tested