Changes between Version 6 and Version 7 of 2015-2-19

Timestamp:

Feb 19, 2015, 4:41:36 PM (11 years ago)

Author:

Elaine Meng

Comment:

--

2015-2-19

@@ -58 +58 @@
    * 14:00 Adjournment
 
+= Notable Chimera1 Features Since Last !AdCo Mtg =
+(distilled from 1.6-1.10 relnotes by Elaine, possible demo/mention in upcoming meeting)
+
+ * as of 1.6:
+  * Rapid Access interface
+  * fetch Uniprot protein sequence and annotations
+  * new ribbon spline options
+  * improved transparency rendering (single-layer on by default)
+  * better default model colors (pastel rather than saturated)j
+  * several options for fitting atomic structures into density maps: global search, iterative sequential fitting, symmetric fitting etc.
+ * as of 1.7
+  * interactive shadows
+  * glossy lighting default
+  * faster loading and graphics
+  * Animation timeline
+  * interface to Modeller for building missing segments (RBVI web service or local)
+  * interfaces to PDB2PQR, APBS, AutoDock Vina (NBCR web service or local)
+ * as of 1.8
+  * show AutoPack results
+  * show Rich Molecular Format
+  * REST interface (RESTServer tool)
+  * electric field line display for ESP maps (command "measure fieldLines")
+  * interactive repositioning of 2D arrows
+ * as of 1.9
+  * interface to multiple sequence alignment with Clustal Omega or MUSCLE (RBVI web services)
+  * "struts" command to reinforce structures for 3D printing
+  * "vseries" volume series playback and processing options
+  * more efficient save/restore of coordinates in sessions
+  * export as Collada
+ * as of 1.10
+  * protein contact maps color-coded by distance (RR Distance Maps tool)
+  * fetch PDB biounit, CATH domain
+  * MDA multidomain assembler 
+  * Modeller interface allows specifying additional distance restraints
+  * plot all-atom and backbone RMSDs along sequence alignments (previously only alpha-carbon RMSDs)
+  * show Collada
+
 = Next Meeting =
  *