Timeline



Oct 17, 2016:

6:50 PM Ticket #441 (cartoon helix tubes choke on 1zik) closed by Conrad Huang
fixed: Fixed in 11680f2. In tube mode, 1zik only has …
3:33 PM Ticket #446 (cartoon: changing nucleic style also changes coil) closed by Conrad Huang
fixed: Fixed in fb5dff2. Coil styles were always set whether any …
10:07 AM Ticket #450 (Fewer selection outlines) created by scooter@…
Begin forwarded message: From: Scooter Morris Subject: Strange …

Oct 13, 2016:

5:22 PM Ticket #448 (Info log message highlighted like warnings) closed by pett
fixed
3:03 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:03 PM 2016-10-13 created by Conrad Huang
11:21 AM Ticket #449 (Volume planes on multiple data display is erratic) created by meng@…
Looks like volume planes command to cycle through planes when applied …
9:46 AM Ticket #448 (Info log message highlighted like warnings) created by Tom Goddard
When opening a file the collating log colors both warnings and info …

Oct 11, 2016:

7:02 PM Ticket #447 (Transparency command on volumes undone when contour level changes) created by meng@…
The transparency command on volume surface display changes the surface …
12:25 PM Ticket #446 (cartoon: changing nucleic style also changes coil) created by Elaine Meng
Width, thickness, cross-section should be separately settable for …
9:39 AM Ticket #445 (Traceback when executing a long select command) created by Scooter Morris
Crashed when issuing the following REST command: sel …

Oct 9, 2016:

10:04 PM Ticket #444 (Python shell scripts refer to wrong install location) closed by Greg Couch
fixed: Python scripts are now removed from the application to avoid them …

Oct 7, 2016:

12:46 PM Ticket #444 (Python shell scripts refer to wrong install location) created by tic20@…
The Python shell script included in Linux ChimeraX in the bin …

Oct 6, 2016:

3:14 PM 2016-10-06 created by Conrad Huang
3:10 PM DeveloperMeetings edited by Conrad Huang
(diff)

Oct 5, 2016:

4:33 PM Ticket #443 (mmaker error: KeyError: ('<', 'M')) closed by pett
fixed: The domain-restricted sequence that was constructed wasn't having its …
3:58 PM Ticket #443 (mmaker error: KeyError: ('<', 'M')) created by Tom Goddard
open 3iko del ~/C open ScNup84_7-488_506-726_new.pdb mmaker #1 to …
1:53 PM Ticket #442 (Deleting atoms of 3jro causes crash) closed by pett
fixed: Fixed. The translation of a min() func from Chimera 1 in its …
12:35 PM Ticket #442 (Deleting atoms of 3jro causes crash) created by Tom Goddard
open 3jro del /a:1100-2000 del :100-200 crashes in …

Oct 4, 2016:

11:25 AM Ticket #441 (cartoon helix tubes choke on 1zik) created by Elaine Meng
Although I can show tube helices for several other models without this …
10:49 AM Ticket #440 (Dual view windows to compare structures) created by mheller@…
Begin forwarded message: From: Markus Heller Subject: [Chimera-users] …

Sep 30, 2016:

2:16 PM Ticket #439 (Signing windows ChimeraX fails) created by Tom Goddard
Successful compile (128.672 sec). Resulting Setup program filename is: …

Sep 29, 2016:

3:20 PM 2016-09-29 edited by Conrad Huang
(diff)
3:20 PM 2016-09-29 edited by Conrad Huang
(diff)
3:16 PM DeveloperMeetings edited by Conrad Huang
(diff)
3:15 PM 2016-09-29 created by Conrad Huang

Sep 28, 2016:

2:31 PM Ticket #438 (PDBFixer doesn't add correct atoms) created by Tom Goddard
PDBFixer on 5jqf incorrectly adds a fourth hydrogen H to the first …
1:24 PM Ticket #437 (OpenMM hangs and uses all system memory, tug atom mouse mode) created by Tom Goddard
Using the tug mouse mode on Mac OS 10.11 and 10.12 frequently at the …

Sep 26, 2016:

11:41 AM Ticket #434 ("ts refresh" gives traceback mentioning ihm) closed by Greg Couch
fixed: This error actually comes from better error checking of the bundle API …

Sep 23, 2016:

4:46 PM Ticket #436 (Tool setup.py cannot register multiple extensions for file format) created by pett
FASTA and several other sequence formats have no "standard" file …

Sep 22, 2016:

4:47 PM Ticket #435 (strand command-line selector broken) closed by pett
fixed: Fixed. Conrad missed the 'strand' and 'coil' selectors when he …
4:40 PM Ticket #435 (strand command-line selector broken) created by Elaine Meng
trying to use atomspec "strand" gives error (e.g. "sel strand") …
4:32 PM 2016-09-22 edited by Elaine Meng
(diff)
4:30 PM DeveloperMeetings edited by Conrad Huang
(diff)
4:09 PM 2016-09-22 created by Conrad Huang

Sep 20, 2016:

2:52 PM Ticket #434 ("ts refresh" gives traceback mentioning ihm) created by Elaine Meng
UCSF ChimeraX version: 0.1 (2016-09-16) toolshed refresh Traceback …
2:35 PM Ticket #432 (capping residue ACE considered ligand, not surfaced) closed by pett
fixed: Capping groups now included in polymer chain.
10:23 AM Ticket #433 (consider PISA fetch for assemblies and/or interface statistics) created by Elaine Meng
Forming URLs to retrieve data from PDBePISA: …

Sep 19, 2016:

4:16 PM 2016-08-29 edited by Tom Ferrin
(diff)
3:32 PM Ticket #432 (capping residue ACE considered ligand, not surfaced) created by Elaine Meng
Example is both chains in 1hzx. Probably the same issue with NME …
2:54 PM 2016-09-19 created by Tom Ferrin
1:56 PM DeveloperMeetings edited by Tom Ferrin
(diff)
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