Opened 2 years ago

Last modified 2 years ago

#9663 closed defect

Crash during volume command — at Version 1

Reported by: Prashant.k.singh@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by Eric Pettersen) 

The following bug report has been submitted:
Platform:        macOS-13.5-arm64-arm-64bit
ChimeraX Version: 1.7.dev202305160152 (2023-05-16 01:52:41 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error

Thread 0x000000029710b000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x00000002960ff000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x00000002950f3000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x00000002940e7000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x00000002930db000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x00000002920cf000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x00000002910c3000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x00000002900b7000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000000028f0ab000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000000028e09f000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000000028d093000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000000028c087000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Thread 0x000000028b07b000 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap

Current thread 0x00000001f88c2080 (most recent call first):
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL/GL/VERSION/GL_1_5.py", line 125 in glBufferSubData
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 2702 in update_buffer_data
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1904 in update_buffers
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1916 in activate_bindings
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 803 in _draw_geometry
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 776 in draw_self
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 769 in draw
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1556 in _draw_multiple
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1543 in draw_opaque
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 247 in _draw_scene
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 177 in draw
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in 
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


{"app_name":"ChimeraX","timestamp":"2023-08-29 16:27:04.00 -0500","app_version":"1.7.0","slice_uuid":"a5992708-d5b4-36ec-ac0a-e525f6105b56","build_version":"1.7.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.5 (22G74)","roots_installed":0,"name":"ChimeraX","incident_id":"ADF95627-23DF-4DC4-B9B2-FB916777A929"}
{
  "uptime" : 560000,
  "procRole" : "Foreground",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro18,1",
  "coalitionID" : 71879,
  "osVersion" : {
    "train" : "macOS 13.5",
    "build" : "22G74",
    "releaseType" : "User"
  },
  "captureTime" : "2023-08-29 16:26:53.5649 -0500",
  "incident" : "ADF95627-23DF-4DC4-B9B2-FB916777A929",
  "pid" : 18713,
  "translated" : false,
  "cpuType" : "ARM-64",
  "roots_installed" : 0,
  "bug_type" : "309",
  "procLaunch" : "2023-08-28 15:00:28.1598 -0500",
  "procStartAbsTime" : 12827957681887,
  "procExitAbsTime" : 13503122748654,
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.7.0","CFBundleVersion":"1.7.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"8B194EE4-C40E-5B5C-9783-DC9A8D14938F","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "C8325DBF-E4AA-C806-BD0F-A70D9DE3ADB6",
  "codeSigningID" : "edu.ucsf.cgl.ChimeraX",
  "codeSigningTeamID" : "LWV8X224YF",
  "codeSigningFlags" : 570491649,
  "codeSigningValidationCategory" : 6,
  "codeSigningTrustLevel" : 0,
  "wakeTime" : 2975,
  "sleepWakeUUID" : "5ABCCC79-B1A8-47BB-BED1-53E21D2EC198",
  "sip" : "enabled",
  "vmRegionInfo" : "0x1205f8000 is in 0x1205f8000-0x1205fc000;  bytes after start: 0  bytes before end: 16383\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      ColorSync                   1205d4000-1205d8000    [   16K] r--\/r-- SM=COW  \n      GAP OF 0x20000 BYTES\n--->  mapped file                 1205f8000-1205fc000    [   16K] r--\/rwx SM=COW  ...t_id=bc10b421\n      shared memory               1205fc000-120600000    [   16K] rw-\/rw- SM=SHM  ",
  "exception" : {"codes":"0x0000000000000002, 0x00000001205f8000","rawCodes":[2,4838096896],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_PROTECTION_FAILURE at 0x00000001205f8000"},
  "termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"ChimeraX","byPid":18713},
  "vmregioninfo" : "0x1205f8000 is in 0x1205f8000-0x1205fc000;  bytes after start: 0  bytes before end: 16383\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      ColorSync                   1205d4000-1205d8000    [   16K] r--\/r-- SM=COW  \n      GAP OF 0x20000 BYTES\n--->  mapped file                 1205f8000-1205fc000    [   16K] r--\/rwx SM=COW  ...t_id=bc10b421\n      shared memory               1205fc000-120600000    [   16K] rw-\/rw- SM=SHM  ",
  "extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
  "faultingThread" : 0,
  "threads" : [{"triggered":true,"id":11031582,"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":6937820588},{"value":4966579224},{"value":4797125652965622844},{"value":4284},{"value":0},{"value":7438232731336512979},{"value":7438232735756531027},{"value":78},{"value":0},{"value":49},{"value":4760175280},{"value":72057602518295905,"symbolLocation":72057594037927937,"symbol":"OBJC_CLASS_$_AGXG13XFamilyBuffer"},{"value":8480367968,"symbolLocation":0,"symbol":"OBJC_CLASS_$_AGXG13XFamilyBuffer"},{"value":328},{"value":8543695776},{"value":0},{"value":10},{"value":8464900224,"symbolLocation":0,"symbol":"_main_thread"},{"value":259},{"value":8464900448,"symbolLocation":224,"symbol":"_main_thread"},{"value":11882453392},{"value":4967441832},{"value":49896144896},{"value":105560811773056},{"value":11882324384},{"value":6131457704}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6937639976},"cpsr":{"value":1073745920},"fp":{"value":4966579024},"sp":{"value":4966578992},"esr":{"value":1442840704,"description":" 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===== Log before crash start =====
UCSF ChimeraX version: 1.7.dev202305160152 (2023-05-16)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/prash_mbp/Dropbox (VU Basic
> Sciences)/Iverson_Prash/Letterhead/MSC-ring.cxs" format session

Opened C34_resampled.mrc as #3.1, grid size 1308,1308,1308, pixel 0.8, shown
at level 0.0806, step 1, values float32  
Opened C11_resampled.mrc as #3.2, grid size 1308,1308,1308, pixel 0.8, shown
at level 0.144, step 1, values float32  
Opened C34_resampled.mrc zone as #4, grid size 600,602,201, pixel 0.8, shown
at level 0.0806, step 1, values float32  
Opened C11_resampled.mrc zone as #5, grid size 312,311,164, pixel 0.8, shown
at level 0.144, step 1, values float32  
opened ChimeraX session  

> ui tool show "Side View"

> open 6ySF

6ysf title:  
Structure of the flagellar MotAB stator complex from Clostridium sporogenes
[more info...]  
  
Chain information for 6ysf #6  
---  
Chain | Description | UniProt  
A B | Chemotaxis motB protein | A0A1V9IL35_CLOSG 1-251  
C D E F G | Chemotaxis MotA protein | A0A2X3BQ48_CLOSG 1-270  
  

> view

> hide #!3 models

> select add #6

10220 atoms, 10387 bonds, 1327 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models #6,1,0,0,-1.3467,0,1,0,102,0,0,1,389.38

> view matrix models #6,1,0,0,179.13,0,1,0,341.64,0,0,1,278.85

> view matrix models
> #6,0.93336,0.040912,-0.35659,222.62,0.28894,0.50377,0.81408,268.91,0.21295,-0.86287,0.45838,405.91

> view matrix models
> #6,0.93943,0.010777,-0.34256,223.46,0.29294,0.49356,0.81889,268.98,0.1779,-0.86965,0.46051,410.16

> view matrix models
> #6,0.93501,0.028624,-0.35345,223.35,0.30573,0.4399,0.8444,270.21,0.17965,-0.89759,0.40256,419.42

> view matrix models
> #6,0.93501,0.028624,-0.35345,263.75,0.30573,0.4399,0.8444,283.48,0.17965,-0.89759,0.40256,483.85

> show sel cartoons

> hide sel atoms

> cartoon style width 2.5 thickness 1.2

> cartoon style width 2.5 thickness 2

> cartoon style width 3 thickness 2

> cartoon style width 3 thickness 2.5

> cartoon style width 3 thickness 2

> cartoon style width 4 thickness 2

> cartoon style width 3.5 thickness 2

> view matrix models
> #6,0.9453,-0.065498,-0.31955,268.4,0.3158,0.42916,0.84622,283.27,0.081714,-0.90085,0.42637,492.15

> view matrix models
> #6,0.94311,-0.035598,-0.33057,266.83,0.31272,0.43267,0.84558,283.32,0.11293,-0.90085,0.41918,489.57

> view matrix models
> #6,0.93532,-0.0043271,-0.35379,267.11,0.32811,0.38477,0.86273,284.59,0.13239,-0.923,0.3613,496.24

> view matrix models
> #6,0.93532,-0.0043271,-0.35379,274.8,0.32811,0.38477,0.86273,282.73,0.13239,-0.923,0.3613,503.51

> view matrix models
> #6,0.4104,-0.25599,-0.87524,416.48,0.90585,0.22486,0.35899,293.01,0.10491,-0.94016,0.32418,512.44

> view matrix models
> #6,0.4104,-0.25599,-0.87524,421.58,0.90585,0.22486,0.35899,259.1,0.10491,-0.94016,0.32418,515.05

> select subtract #6

Nothing selected  

> select add #6

10220 atoms, 10387 bonds, 1327 residues, 1 model selected  

> show sel surfaces

> hide sel cartoons

> color sel bychain

> view matrix models
> #6,0.4104,-0.25599,-0.87524,443.66,0.90585,0.22486,0.35899,452.15,0.10491,-0.94016,0.32418,447.73

> view matrix models
> #6,0.4104,-0.25599,-0.87524,451.99,0.90585,0.22486,0.35899,510.06,0.10491,-0.94016,0.32418,514.37

> view matrix models
> #6,0.41786,-0.2779,-0.86496,452.41,0.89565,0.28562,0.34092,506.58,0.15231,-0.91717,0.36825,501.79

> view matrix models
> #6,0.97166,0.21403,0.10029,235.15,-0.16007,0.28363,0.94548,553.75,0.17391,-0.93474,0.30986,507.64

> view matrix models
> #6,0.97651,0.18597,0.10879,236.73,-0.16511,0.32149,0.93241,551.63,0.13842,-0.92847,0.34464,506.89

> view matrix models
> #6,0.97651,0.18597,0.10879,237.73,-0.16511,0.32149,0.93241,553.28,0.13842,-0.92847,0.34464,507.24

> select subtract #6

7 models selected  

> select #1/f/g/m/n/p/q

6030 atoms, 6083 bonds, 910 residues, 1 model selected  

> select ~sel

274055 atoms, 276631 bonds, 77 pseudobonds, 40366 residues, 15 models selected  

> select subtract #2

209210 atoms, 211126 bonds, 31357 residues, 20 models selected  

> select subtract #3

209210 atoms, 211126 bonds, 31357 residues, 13 models selected  

> select subtract #4

209210 atoms, 211126 bonds, 31357 residues, 11 models selected  

> select subtract #5

209210 atoms, 211126 bonds, 31357 residues, 9 models selected  

> select subtract #6

198990 atoms, 200739 bonds, 30030 residues, 8 models selected  

> transparency sel 90 target c

> transparency sel 100 target c

> view

> select add #1

205020 atoms, 206822 bonds, 30940 residues, 1 model selected  

> select subtract #1

Nothing selected  

> lighting soft

> lighting simple

> lighting soft

> lighting simple

> graphics silhouettes true width 2 depthJump .1

> graphics silhouettes true width 1.5 depthJump .1

> lighting full

> lighting soft

> lighting simple

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes true width 1 depthJump .1

> turn x

> turn y

> turn y 10

> turn y -10

> lighting full

> lighting soft

> lighting simple

> turn x

> lighting full

> rainbow #1/g:280-290

> lighting full

> lighting simple

> turn y 1

> lighting full

> ui tool show "Side View"

> view

> view orient

> turn x

> turn y -1

> turn x

> select add #6

10220 atoms, 10387 bonds, 1327 residues, 1 model selected  

> transparency (#!6 & sel) 50

> transparency (#!6 & sel) 90

> ui mousemode right "translate selected models"

> view matrix models
> #6,0.97651,0.18597,0.10879,210.71,-0.16511,0.32149,0.93241,525.41,0.13842,-0.92847,0.34464,507.24

> view matrix models
> #6,0.97651,0.18597,0.10879,214.55,-0.16511,0.32149,0.93241,521.91,0.13842,-0.92847,0.34464,507.4

> view matrix models
> #6,0.97651,0.18597,0.10879,213.48,-0.16511,0.32149,0.93241,520.32,0.13842,-0.92847,0.34464,507.43

> view matrix models
> #6,0.85903,0.26797,0.43619,180.47,-0.49622,0.22639,0.83816,576.59,0.12585,-0.93645,0.32745,511.56

> view matrix models
> #6,0.85903,0.26797,0.43619,176.45,-0.49622,0.22639,0.83816,575.45,0.12585,-0.93645,0.32745,511.66

> view

> view orient

> turn x

> transparency (#!6 & sel) 0

> lighting full

> turn y -1

> lighting full

> lighting soft

> lighting full

> lighting shadows false

> lighting shadows true

> graphics silhouettes false

> graphics silhouettes true

> lighting soft

> lighting simple

> lighting full

> lighting soft

> select subtract #6

7 models selected  

> graphics silhouettes false

> graphics silhouettes true

> lighting full

> save "/Users/prash_mbp/Dropbox (VU Basic Sciences)/[FiguresOnly_C-
> ring]/Figures/RAW Figures/Torque Mechanism/overview-torque.png" width 1954
> height 1323 supersample 3

> save "/Users/prash_mbp/Dropbox (VU Basic Sciences)/[FiguresOnly_C-
> ring]/Figures/RAW Figures/Torque Mechanism/closeup-torque.png" width 1954
> height 1323 supersample 3

> lighting soft

> lighting full

> lighting simple

> save "/Users/prash_mbp/Dropbox (VU Basic Sciences)/[FiguresOnly_C-
> ring]/Figures/RAW Figures/Torque Mechanism/overview-torque.png" width 1954
> height 1323 supersample 3 transparentBackground true

> save "/Users/prash_mbp/Dropbox (VU Basic Sciences)/[FiguresOnly_C-
> ring]/Figures/RAW Figures/Torque Mechanism/overview-torque.png" width 1954
> height 1323 supersample 3

> save "/Users/prash_mbp/Dropbox (VU Basic Sciences)/[FiguresOnly_C-
> ring]/Figures/RAW Figures/Torque Mechanism/CCW.cxs"

> close #3

> close #4

> close #5

> open "/Users/prash_mbp/Dropbox (VU Basic Sciences)/[FiguresOnly_C-
> ring]/Figures/RAW Figures/CCW_Vs_CW_Comparison/Just4fun_CW_3AJC.pdb"

Summary of feedback from opening /Users/prash_mbp/Dropbox (VU Basic
Sciences)/[FiguresOnly_C-ring]/Figures/RAW
Figures/CCW_Vs_CW_Comparison/Just4fun_CW_3AJC.pdb  
---  
warnings | Ignored bad PDB record found on line 237  
  
  
Ignored bad PDB record found on line 3233  
  
  
Ignored bad PDB record found on line 5321  
  
  
Ignored bad PDB record found on line 5779  
  
  
Ignored bad PDB record found on line 6170  
  
  
1 messages similar to the above omitted  
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Duplicate atom serial number found: 235  
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[deleted to fit within ticket limits]  
  
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Duplicate atom serial number found: 5775  
384 messages similar to the above omitted  
Ignored bad PDB record found on line 202370  
  
  
Duplicate atom serial number found: 6160  
Duplicate atom serial number found: 6161  
Duplicate atom serial number found: 6162  
Duplicate atom serial number found: 6163  
Duplicate atom serial number found: 6164  
364 messages similar to the above omitted  
Ignored bad PDB record found on line 202741  
  
  
Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
229 messages similar to the above omitted  
Ignored bad PDB record found on line 202977  
  
  
Duplicate atom serial number found: 235  
Duplicate atom serial number found: 236  
Duplicate atom serial number found: 237  
Duplicate atom serial number found: 238  
Duplicate atom serial number found: 239  
2989 messages similar to the above omitted  
Ignored bad PDB record found on line 205973  
  
  
Duplicate atom serial number found: 3229  
Duplicate atom serial number found: 3230  
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Duplicate atom serial number found: 3232  
Duplicate atom serial number found: 3233  
2081 messages similar to the above omitted  
Ignored bad PDB record found on line 208061  
  
  
Duplicate atom serial number found: 5315  
Duplicate atom serial number found: 5316  
Duplicate atom serial number found: 5317  
Duplicate atom serial number found: 5318  
Duplicate atom serial number found: 5319  
451 messages similar to the above omitted  
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Duplicate atom serial number found: 5771  
Duplicate atom serial number found: 5772  
Duplicate atom serial number found: 5773  
Duplicate atom serial number found: 5774  
Duplicate atom serial number found: 5775  
384 messages similar to the above omitted  
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Duplicate atom serial number found: 6160  
Duplicate atom serial number found: 6161  
Duplicate atom serial number found: 6162  
Duplicate atom serial number found: 6163  
Duplicate atom serial number found: 6164  
364 messages similar to the above omitted  
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Duplicate atom serial number found: 1  
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Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
229 messages similar to the above omitted  
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Duplicate atom serial number found: 235  
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Duplicate atom serial number found: 237  
Duplicate atom serial number found: 238  
Duplicate atom serial number found: 239  
2989 messages similar to the above omitted  
Ignored bad PDB record found on line 212513  
  
  
Duplicate atom serial number found: 3229  
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Duplicate atom serial number found: 3231  
Duplicate atom serial number found: 3232  
Duplicate atom serial number found: 3233  
2081 messages similar to the above omitted  
Ignored bad PDB record found on line 214601  
  
  
Duplicate atom serial number found: 5315  
Duplicate atom serial number found: 5316  
Duplicate atom serial number found: 5317  
Duplicate atom serial number found: 5318  
Duplicate atom serial number found: 5319  
451 messages similar to the above omitted  
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Duplicate atom serial number found: 5771  
Duplicate atom serial number found: 5772  
Duplicate atom serial number found: 5773  
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Duplicate atom serial number found: 5775  
384 messages similar to the above omitted  
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Duplicate atom serial number found: 6160  
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Duplicate atom serial number found: 1  
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229 messages similar to the above omitted  
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Duplicate atom serial number found: 235  
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Duplicate atom serial number found: 237  
Duplicate atom serial number found: 238  
Duplicate atom serial number found: 239  
2989 messages similar to the above omitted  
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Duplicate atom serial number found: 3229  
Duplicate atom serial number found: 3230  
Duplicate atom serial number found: 3231  
Duplicate atom serial number found: 3232  
Duplicate atom serial number found: 3233  
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Duplicate atom serial number found: 5315  
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Duplicate atom serial number found: 5318  
Duplicate atom serial number found: 5319  
451 messages similar to the above omitted  
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Duplicate atom serial number found: 5771  
Duplicate atom serial number found: 5772  
Duplicate atom serial number found: 5773  
Duplicate atom serial number found: 5774  
Duplicate atom serial number found: 5775  
384 messages similar to the above omitted  
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Duplicate atom serial number found: 6160  
Duplicate atom serial number found: 6161  
Duplicate atom serial number found: 6162  
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364 messages similar to the above omitted  
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Ignored bad PDB record found on line 222362  
  
Chain information for Just4fun_CW_3AJC.pdb #3  
---  
Chain | Description  
A BC BF DB DE F FA FD FG HC HF I JB JE LA LD LG NC NF PB PE RA RD RG S TC TF
VB VE XA XD Z ZC ZF | No description available  
AA AD AG B CC CF EB EE G GA GD GG IC IF J KB KE MA MD MG OC OF QB QE SA SD SG
T UC UF WB WE YA YD | No description available  
AB AE CA CD CG D EC EF GB GE IA ID IG KC KF L MB ME N OA OD OG QC QF SB SE UA
UD UG W WC WF YB YE | No description available  
AC AF CB CE EA ED EG GC GF H IB IE KA KD KG MC MF OB OE Q QA QD QG R SC SF UB
UE WA WD WG Y YC YF | No description available  
BA BD BG C DC DF FB FE HA HD HG JC JF K LB LE M NA ND NG PC PF RB RE TA TD TG
V VC VF XB XE ZA ZD | No description available  
BB BE DA DD DG E FC FF HB HE JA JD JG LC LF NB NE O P PA PD PG RC RF TB TE VA
VD VG X XC XF ZB ZE | No description available  
  

> select add #3

221952 atoms, 224400 bonds, 30940 residues, 1 model selected  

> show sel cartoons

> hide sel atoms

> select subtract #3

Nothing selected  

> select add #1

1232 atoms, 1239 bonds, 158 residues, 1 model selected  

> hide #2 models

> select :174

1156 atoms, 1088 bonds, 136 residues, 3 models selected  

> morph

Missing or invalid "structures" argument: empty atom specifier  

> morph #1,3/B frames 40

Require at least 2 structures for morph  

> morph #1,3 frames 40

models have different number of chains, 1 (Morph - FliG_167_324.pdb #/G) and
204 (Just4fun_CW_3AJC.pdb #3/A,Just4fun_CW_3AJC.pdb #3/AA,Just4fun_CW_3AJC.pdb
#3/AB,Just4fun_CW_3AJC.pdb #3/AC,Just4fun_CW_3AJC.pdb
#3/AD,Just4fun_CW_3AJC.pdb #3/AE,Just4fun_CW_3AJC.pdb
#3/AF,Just4fun_CW_3AJC.pdb #3/AG,Just4fun_CW_3AJC.pdb
#3/B,Just4fun_CW_3AJC.pdb #3/BA,Just4fun_CW_3AJC.pdb
#3/BB,Just4fun_CW_3AJC.pdb #3/BC,Just4fun_CW_3AJC.pdb
#3/BD,Just4fun_CW_3AJC.pdb #3/BE,Just4fun_CW_3AJC.pdb
#3/BF,Just4fun_CW_3AJC.pdb #3/BG,Just4fun_CW_3AJC.pdb
#3/C,Just4fun_CW_3AJC.pdb #3/CA,Just4fun_CW_3AJC.pdb
#3/CB,Just4fun_CW_3AJC.pdb #3/CC,Just4fun_CW_3AJC.pdb
#3/CD,Just4fun_CW_3AJC.pdb #3/CE,Just4fun_CW_3AJC.pdb
#3/CF,Just4fun_CW_3AJC.pdb #3/CG,Just4fun_CW_3AJC.pdb
#3/D,Just4fun_CW_3AJC.pdb #3/DA,Just4fun_CW_3AJC.pdb
#3/DB,Just4fun_CW_3AJC.pdb #3/DC,Just4fun_CW_3AJC.pdb
#3/DD,Just4fun_CW_3AJC.pdb #3/DE,Just4fun_CW_3AJC.pdb
#3/DF,Just4fun_CW_3AJC.pdb #3/DG,Just4fun_CW_3AJC.pdb
#3/E,Just4fun_CW_3AJC.pdb #3/EA,Just4fun_CW_3AJC.pdb
#3/EB,Just4fun_CW_3AJC.pdb #3/EC,Just4fun_CW_3AJC.pdb
#3/ED,Just4fun_CW_3AJC.pdb #3/EE,Just4fun_CW_3AJC.pdb
#3/EF,Just4fun_CW_3AJC.pdb #3/EG,Just4fun_CW_3AJC.pdb
#3/F,Just4fun_CW_3AJC.pdb #3/FA,Just4fun_CW_3AJC.pdb
#3/FB,Just4fun_CW_3AJC.pdb #3/FC,Just4fun_CW_3AJC.pdb
#3/FD,Just4fun_CW_3AJC.pdb #3/FE,Just4fun_CW_3AJC.pdb
#3/FF,Just4fun_CW_3AJC.pdb #3/FG,Just4fun_CW_3AJC.pdb
#3/G,Just4fun_CW_3AJC.pdb #3/GA,Just4fun_CW_3AJC.pdb
#3/GB,Just4fun_CW_3AJC.pdb #3/GC,Just4fun_CW_3AJC.pdb
#3/GD,Just4fun_CW_3AJC.pdb #3/GE,Just4fun_CW_3AJC.pdb
#3/GF,Just4fun_CW_3AJC.pdb #3/GG,Just4fun_CW_3AJC.pdb
#3/H,Just4fun_CW_3AJC.pdb #3/HA,Just4fun_CW_3AJC.pdb
#3/HB,Just4fun_CW_3AJC.pdb #3/HC,Just4fun_CW_3AJC.pdb
#3/HD,Just4fun_CW_3AJC.pdb #3/HE,Just4fun_CW_3AJC.pdb
#3/HF,Just4fun_CW_3AJC.pdb #3/HG,Just4fun_CW_3AJC.pdb
#3/I,Just4fun_CW_3AJC.pdb #3/IA,Just4fun_CW_3AJC.pdb
#3/IB,Just4fun_CW_3AJC.pdb #3/IC,Just4fun_CW_3AJC.pdb
#3/ID,Just4fun_CW_3AJC.pdb #3/IE,Just4fun_CW_3AJC.pdb
#3/IF,Just4fun_CW_3AJC.pdb #3/IG,Just4fun_CW_3AJC.pdb
#3/J,Just4fun_CW_3AJC.pdb #3/JA,Just4fun_CW_3AJC.pdb
#3/JB,Just4fun_CW_3AJC.pdb #3/JC,Just4fun_CW_3AJC.pdb
#3/JD,Just4fun_CW_3AJC.pdb #3/JE,Just4fun_CW_3AJC.pdb
#3/JF,Just4fun_CW_3AJC.pdb #3/JG,Just4fun_CW_3AJC.pdb
#3/K,Just4fun_CW_3AJC.pdb #3/KA,Just4fun_CW_3AJC.pdb
#3/KB,Just4fun_CW_3AJC.pdb #3/KC,Just4fun_CW_3AJC.pdb
#3/KD,Just4fun_CW_3AJC.pdb #3/KE,Just4fun_CW_3AJC.pdb
#3/KF,Just4fun_CW_3AJC.pdb #3/KG,Just4fun_CW_3AJC.pdb
#3/L,Just4fun_CW_3AJC.pdb #3/LA,Just4fun_CW_3AJC.pdb
#3/LB,Just4fun_CW_3AJC.pdb #3/LC,Just4fun_CW_3AJC.pdb
#3/LD,Just4fun_CW_3AJC.pdb #3/LE,Just4fun_CW_3AJC.pdb
#3/LF,Just4fun_CW_3AJC.pdb #3/LG,Just4fun_CW_3AJC.pdb
#3/M,Just4fun_CW_3AJC.pdb #3/MA,Just4fun_CW_3AJC.pdb
#3/MB,Just4fun_CW_3AJC.pdb #3/MC,Just4fun_CW_3AJC.pdb
#3/MD,Just4fun_CW_3AJC.pdb #3/ME,Just4fun_CW_3AJC.pdb
#3/MF,Just4fun_CW_3AJC.pdb #3/MG,Just4fun_CW_3AJC.pdb
#3/N,Just4fun_CW_3AJC.pdb #3/NA,Just4fun_CW_3AJC.pdb
#3/NB,Just4fun_CW_3AJC.pdb #3/NC,Just4fun_CW_3AJC.pdb
#3/ND,Just4fun_CW_3AJC.pdb #3/NE,Just4fun_CW_3AJC.pdb
#3/NF,Just4fun_CW_3AJC.pdb #3/NG,Just4fun_CW_3AJC.pdb
#3/O,Just4fun_CW_3AJC.pdb #3/OA,Just4fun_CW_3AJC.pdb
#3/OB,Just4fun_CW_3AJC.pdb #3/OC,Just4fun_CW_3AJC.pdb
#3/OD,Just4fun_CW_3AJC.pdb #3/OE,Just4fun_CW_3AJC.pdb
#3/OF,Just4fun_CW_3AJC.pdb #3/OG,Just4fun_CW_3AJC.pdb
#3/P,Just4fun_CW_3AJC.pdb #3/PA,Just4fun_CW_3AJC.pdb
#3/PB,Just4fun_CW_3AJC.pdb #3/PC,Just4fun_CW_3AJC.pdb
#3/PD,Just4fun_CW_3AJC.pdb #3/PE,Just4fun_CW_3AJC.pdb
#3/PF,Just4fun_CW_3AJC.pdb #3/PG,Just4fun_CW_3AJC.pdb
#3/Q,Just4fun_CW_3AJC.pdb #3/QA,Just4fun_CW_3AJC.pdb
#3/QB,Just4fun_CW_3AJC.pdb #3/QC,Just4fun_CW_3AJC.pdb
#3/QD,Just4fun_CW_3AJC.pdb #3/QE,Just4fun_CW_3AJC.pdb
#3/QF,Just4fun_CW_3AJC.pdb #3/QG,Just4fun_CW_3AJC.pdb
#3/R,Just4fun_CW_3AJC.pdb #3/RA,Just4fun_CW_3AJC.pdb
#3/RB,Just4fun_CW_3AJC.pdb #3/RC,Just4fun_CW_3AJC.pdb
#3/RD,Just4fun_CW_3AJC.pdb #3/RE,Just4fun_CW_3AJC.pdb
#3/RF,Just4fun_CW_3AJC.pdb #3/RG,Just4fun_CW_3AJC.pdb
#3/S,Just4fun_CW_3AJC.pdb #3/SA,Just4fun_CW_3AJC.pdb
#3/SB,Just4fun_CW_3AJC.pdb #3/SC,Just4fun_CW_3AJC.pdb
#3/SD,Just4fun_CW_3AJC.pdb #3/SE,Just4fun_CW_3AJC.pdb
#3/SF,Just4fun_CW_3AJC.pdb #3/SG,Just4fun_CW_3AJC.pdb
#3/T,Just4fun_CW_3AJC.pdb #3/TA,Just4fun_CW_3AJC.pdb
#3/TB,Just4fun_CW_3AJC.pdb #3/TC,Just4fun_CW_3AJC.pdb
#3/TD,Just4fun_CW_3AJC.pdb #3/TE,Just4fun_CW_3AJC.pdb
#3/TF,Just4fun_CW_3AJC.pdb #3/TG,Just4fun_CW_3AJC.pdb
#3/UA,Just4fun_CW_3AJC.pdb #3/UB,Just4fun_CW_3AJC.pdb
#3/UC,Just4fun_CW_3AJC.pdb #3/UD,Just4fun_CW_3AJC.pdb
#3/UE,Just4fun_CW_3AJC.pdb #3/UF,Just4fun_CW_3AJC.pdb
#3/UG,Just4fun_CW_3AJC.pdb #3/V,Just4fun_CW_3AJC.pdb
#3/VA,Just4fun_CW_3AJC.pdb #3/VB,Just4fun_CW_3AJC.pdb
#3/VC,Just4fun_CW_3AJC.pdb #3/VD,Just4fun_CW_3AJC.pdb
#3/VE,Just4fun_CW_3AJC.pdb #3/VF,Just4fun_CW_3AJC.pdb
#3/VG,Just4fun_CW_3AJC.pdb #3/W,Just4fun_CW_3AJC.pdb
#3/WA,Just4fun_CW_3AJC.pdb #3/WB,Just4fun_CW_3AJC.pdb
#3/WC,Just4fun_CW_3AJC.pdb #3/WD,Just4fun_CW_3AJC.pdb
#3/WE,Just4fun_CW_3AJC.pdb #3/WF,Just4fun_CW_3AJC.pdb
#3/WG,Just4fun_CW_3AJC.pdb #3/X,Just4fun_CW_3AJC.pdb
#3/XA,Just4fun_CW_3AJC.pdb #3/XB,Just4fun_CW_3AJC.pdb
#3/XC,Just4fun_CW_3AJC.pdb #3/XD,Just4fun_CW_3AJC.pdb
#3/XE,Just4fun_CW_3AJC.pdb #3/XF,Just4fun_CW_3AJC.pdb
#3/Y,Just4fun_CW_3AJC.pdb #3/YA,Just4fun_CW_3AJC.pdb
#3/YB,Just4fun_CW_3AJC.pdb #3/YC,Just4fun_CW_3AJC.pdb
#3/YD,Just4fun_CW_3AJC.pdb #3/YE,Just4fun_CW_3AJC.pdb
#3/YF,Just4fun_CW_3AJC.pdb #3/Z,Just4fun_CW_3AJC.pdb
#3/ZA,Just4fun_CW_3AJC.pdb #3/ZB,Just4fun_CW_3AJC.pdb
#3/ZC,Just4fun_CW_3AJC.pdb #3/ZD,Just4fun_CW_3AJC.pdb
#3/ZE,Just4fun_CW_3AJC.pdb #3/ZF)  

> select #3/B:167-324

1595 atoms, 1610 bonds, 158 residues, 1 model selected  

> select #3/B:172-324

1553 atoms, 1567 bonds, 153 residues, 1 model selected  

> select ~sel

425419 atoms, 429653 bonds, 61727 residues, 3 models selected  

> select subtract #2

221631 atoms, 224071 bonds, 30945 residues, 2 models selected  

> select subtract #1

220399 atoms, 222832 bonds, 30787 residues, 1 model selected  

> delete sel

> morph #1,3 frames 40

Computed 41 frame morph #4  

> coordset #4 1,41

> show #2 models

> view

> hide #2 models

> show #2 models

> hide #4 models

> show #4 models

> show #3 models

> hide #2 models

> select #3:186-195

79 atoms, 78 bonds, 10 residues, 1 model selected  

> delete sel

> morph #1,3 frames 40

Computed 41 frame morph #5  

> coordset #5 1,41

> hide #!5 models

> show #!5 models

> show #1 models

> hide #!5 models

> hide #4 models

> show #!3 models

> select add #1

1232 atoms, 1239 bonds, 158 residues, 1 model selected  

> show #4 models

> hide #4 models

> show #2 models

> hide #2 models

> show #2 models

> hide #1 models

> show #1 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #2 models

> view matrix models
> #1,0.37268,-0.89798,0.23398,697.83,0.91483,0.31327,-0.25487,249.01,0.15557,0.30904,0.93824,-227.85

> view matrix models
> #1,0.26462,-0.95762,0.11374,840.56,0.94731,0.2802,0.15523,41.657,-0.18052,0.066674,0.98131,32.64

> view matrix models
> #1,0.26462,-0.95762,0.11374,838.71,0.94731,0.2802,0.15523,45.41,-0.18052,0.066674,0.98131,30.46

> view matrix models
> #1,0.23506,-0.93225,0.27504,747.54,0.93325,0.29555,0.20418,14.589,-0.27164,0.20869,0.9395,-7.1679

> view matrix models
> #1,0.23506,-0.93225,0.27504,745.98,0.93325,0.29555,0.20418,12.779,-0.27164,0.20869,0.9395,-5.9059

> ui tool show Matchmaker

> matchmaker #!3 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker FliG_167_324.pdb, chain G (#1) with Just4fun_CW_3AJC.pdb, chain B
(#3), sequence alignment score = 1195.5  
RMSD between 11 pruned atom pairs is 1.445 angstroms; (across all 143 pairs:
18.673)  
  

> matchmaker #!3 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker FliG_167_324.pdb, chain G (#1) with Just4fun_CW_3AJC.pdb, chain B
(#3), sequence alignment score = 1195.5  
RMSD between 11 pruned atom pairs is 1.445 angstroms; (across all 143 pairs:
18.673)  
  

> matchmaker #!3 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker FliG_167_324.pdb, chain G (#1) with Just4fun_CW_3AJC.pdb, chain B
(#3), sequence alignment score = 1195.5  
RMSD between 11 pruned atom pairs is 1.445 angstroms; (across all 143 pairs:
18.673)  
  

> matchmaker #!3 to #1/G pairing bs

Parameters  
---  
Chain pairing | bs  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker FliG_167_324.pdb, chain G (#1) with Just4fun_CW_3AJC.pdb, chain B
(#3), sequence alignment score = 1195.5  
RMSD between 11 pruned atom pairs is 1.445 angstroms; (across all 143 pairs:
18.673)  
  

> matchmaker #3/B to #1/G pairing ss

Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker FliG_167_324.pdb, chain G (#1) with Just4fun_CW_3AJC.pdb, chain B
(#3), sequence alignment score = 1195.5  
RMSD between 11 pruned atom pairs is 1.445 angstroms; (across all 143 pairs:
18.673)  
  

> matchmaker #3/B to #1/G pairing ss

Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker FliG_167_324.pdb, chain G (#1) with Just4fun_CW_3AJC.pdb, chain B
(#3), sequence alignment score = 1195.5  
RMSD between 11 pruned atom pairs is 1.445 angstroms; (across all 143 pairs:
18.673)  
  

> matchmaker #3/B to #1/G pairing ss

Parameters  
---  
Chain pairing | ss  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker FliG_167_324.pdb, chain G (#1) with Just4fun_CW_3AJC.pdb, chain B
(#3), sequence alignment score = 1195.5  
RMSD between 11 pruned atom pairs is 1.445 angstroms; (across all 143 pairs:
18.673)  
  

> show #2 models

> save "/Users/prash_mbp/Dropbox (VU Basic Sciences)/[FiguresOnly__C-
> ring]/Figures/FSM/CW.cxs" includeMaps true

> close session

> open "/Users/prash_mbp/Downloads/cryosparc_P11_J406_009_volume_map (1).mrc"

Opened cryosparc_P11_J406_009_volume_map (1).mrc as #1, grid size 768,768,768,
pixel 1.36, shown at step 1, values float32  

> open "/Users/prash_mbp/Downloads/cryosparc_P11_J405_008_volume_map (1).mrc"

Opened cryosparc_P11_J405_008_volume_map (1).mrc as #2, grid size 768,768,768,
pixel 1.36, shown at step 1, values float32  

> view orient

> volume #1 level -0.01938,0 level 0.2138,0.8 level 0.2875,1

> tile

2 models tiled  

> volume #2 color #f8fff9 color #ffffb3 color #ffffb3

> volume #2 color silver color #ffffb3 color #ffffb3

> volume #2 color white color #ffffb3 color #ffffb3

> volume #2 color #5e5e5e color #ffffb3 color #ffffb3

> volume #2 color black color #ffffb3 color #ffffb3

> volume #2 color #00fdff color #ffffb3 color #ffffb3

> volume #2 color white color #ffffb3 color #ffffb3

> volume #2 color #919191 color #ffffb3 color #ffffb3

> volume #2 color #929292 color #ffffb3 color #ffffb3

> volume #2 color white color #ffffb3 color #ffffb3

> volume #2 color #929000 color #ffffb3 color #ffffb3

> volume #2 color #008f00 color #ffffb3 color #ffffb3

> volume #2 color #fffb00 color #ffffb3 color #ffffb3

> volume #2 color white color #ffffb3 color #ffffb3

> volume #2 color #ebebeb color #ffffb3 color #ffffb3

> volume #2 color white color #ffffb3 color #ffffb3

> volume #2 color black color #ffffb3 color #ffffb3

> volume #2 color white color #ffffb3 color #ffffb3

> view

> view orient

> volume #1 region 0,0,0,767,767,767 step 4

> volume #1 region 0,0,0,767,767,767 step 1 colorMode opaque8 showOutlineBox
> true imageMode "box faces"

> volume #1 orthoplanes xyz positionPlanes 383,383,383 imageMode orthoplanes

> volume #2 region 0,0,0,767,767,767 step 4

> volume #2 region 0,0,0,767,767,767 step 1 colorMode opaque8 showOutlineBox
> true orthoplanes xyz positionPlanes 383,383,383 imageMode orthoplanes

> view orient

> volume #2 step 2

> volume #2 step 1

> volume #2 orthoplanes xyz positionPlanes 468,383,383

> volume #2 orthoplanes xyz positionPlanes 585,383,383

> view orient

> view

> view orient

> volume #2 orthoplanes xyz positionPlanes 585,533,383

> volume #1 orthoplanes xyz positionPlanes 383,259,383

> volume #1 orthoplanes xyz positionPlanes 383,244,383

> volume #1 orthoplanes xyz positionPlanes 383,364,383

> volume #1 orthoplanes xyz positionPlanes 383,462,383

> volume #1 orthoplanes xyz positionPlanes 383,529,383

> volume #1 orthoplanes xyz positionPlanes 383,534,383

> volume #1 orthoplanes xyz positionPlanes 383,539,383

> volume #2 orthoplanes xyz positionPlanes 585,535,383

> volume #2 orthoplanes xyz positionPlanes 585,539,383

> volume #2 orthoplanes xyz positionPlanes 292,539,383

> volume #2 orthoplanes xyz positionPlanes 318,539,383

> volume #2 orthoplanes xyz positionPlanes 283,539,383

> volume #2 orthoplanes xyz positionPlanes 283,640,383

> volume #2 orthoplanes xyz positionPlanes 283,615,383

> volume #2 orthoplanes xyz positionPlanes 283,626,383

> volume #2 orthoplanes xyz positionPlanes 277,626,383

> volume #2 orthoplanes xyz positionPlanes 294,626,383

> volume #2 orthoplanes xyz positionPlanes 675,626,383

> volume #1


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.7.dev202305160152 (2023-05-16)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,1
      Model Number: MK183LL/A
      Chip: Apple M1 Pro
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 16 GB
      System Firmware Version: 8422.141.2
      OS Loader Version: 8422.141.2

Software:

    System Software Overview:

      System Version: macOS 13.5 (22G74)
      Kernel Version: Darwin 22.6.0
      Time since boot: 23 days, 17 hours, 2 minutes

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3456 x 2234 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL U3421WE:
          Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
          UI Looks like: 3440 x 1440 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.11
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.45.6
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.3
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202305160152
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.2
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.2
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-QScore: 1.0
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.11.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.2
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.4
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.1
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.2
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (1)

comment:1 by Eric Pettersen, 2 years ago

Component: Unassigned → Volume Data
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash during volume command
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