Changes between Initial Version and Version 2 of Ticket #9544


Ignore:
Timestamp:
Aug 14, 2023, 1:33:31 AM (2 years ago)
Author:
Greg Couch
Comment:

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  • Ticket #9544

    • Property Component Unassigned → Input/Output
    • Property Owner set to Greg Couch
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → Phenix mmCIF secondary structure problems

  • Ticket #9544 – Description

    initial v2  
    44ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
    55Description
    6 (Describe the actions that caused this problem to occur here)
     6}}}
    77When opening CIF files generated by Phenix refine, the secondary structures do not align properly (for the main chain) and some are lost (for additional chains). In contrast, when the same CIF file is opened in Pymol, the secondary structures are properly displayed. This does not seem to occur to the PDB file generated by Phenix refine, where the secondary structures are properly displayed. Attached is the CIF file tested.
    8 
     8{{{
    99Log:
    1010UCSF ChimeraX version: 1.6.1 (2023-05-09)