Changes between Initial Version and Version 1 of Ticket #9513


Ignore:
Timestamp:
Aug 3, 2023, 3:35:11 PM (2 years ago)
Author:
Eric Pettersen
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #9513

    • Property Component Unassigned → Sessions
    • Property Owner set to Greg Couch
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Nucleotide restore state is None

  • Ticket #9513 – Description

    initial v1  
    50305030> color h24 h24-c
    50315031
    5032 > color h28 h28-c
    5033 
    5034 > color h29 h29-c
    5035 
    5036 > color h30 h30-c
    5037 
    5038 > color h31 h31-c
    5039 
    5040 > color h34 h34-c
    5041 
    5042 > color h35 h35-c
    5043 
    5044 > color h44 h44-c
    5045 
    5046 > color H69 hx69-c
    5047 
    5048 executed 70S_color_helices-s.cxc 
    5049 
    5050 > color /v d-c
    5051 
    5052 > color /y p-c
    5053 
    5054 > color /w m-c
    5055 
    5056 executed gtpys_dc.cxc 
    5057 
    5058 > surface cap true
    5059 
    5060 > lighting gentle
    5061 
    5062 > lighting intensity .2
    5063 
    5064 > size stickRadius 0.17
    5065 
    5066 Changed 1744812 bond radii 
    5067 
    5068 > style ringFill thin
    5069 
    5070 Changed 122200 residue ring styles 
    5071 
    5072 > graphics silhouettes true color black
    5073 
    5074 > ~select
    5075 
    5076 Nothing selected 
    5077 
    5078 > ~select
    5079 
    5080 Nothing selected 
    5081 
    5082 > ~ribbon
    5083 
    5084 > ~display
    5085 
    5086 > ribbon
    5087 
    5088 > ~ribbon mrna
    5089 
    5090 > display mrna
    5091 
    5092 > display antiplus
    5093 
    5094 > display /x:505-514,584
    5095 
    5096 > display /6:1492,1493,530,532,1054,1400,1397
    5097 
    5098 > display /3:1913
    5099 
    5100 > display #*.3/L:44
    5101 
    5102 > hide models
    5103 
    5104 > show #31.3,5 models
    5105 
    5106 > view dc1
    5107 
    5108 > windowsize 1000 1000
    5109 
    5110 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    5111 > format tiff pixelSize 0.1 quality 100 transparentBackground true
    5112 
    5113 Expected a keyword 
    5114 
    5115 > hide models
    5116 
    5117 > show #31.3,5 models
    5118 
    5119 > view dc1
    5120 
    5121 > windowsize 1000 1000
    5122 
    5123 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    5124 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5125 
    5126 > view dc2
    5127 
    5128 > windowsize 1000 1000
    5129 
    5130 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    5131 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5132 
    5133 > hide models
    5134 
    5135 > show #32.3,5 models
    5136 
    5137 > windowsize 1000 1000
    5138 
    5139 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    5140 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5141 
    5142 > view dc2
    5143 
    5144 > windowsize 1000 1000
    5145 
    5146 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    5147 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5148 
    5149 > hide models
    5150 
    5151 > show #12.3,5 models
    5152 
    5153 > view dc1
    5154 
    5155 > windowsize 1000 1000
    5156 
    5157 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    5158 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5159 
    5160 > view dc2
    5161 
    5162 > windowsize 1000 1000
    5163 
    5164 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    5165 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5166 
    5167 > hide models
    5168 
    5169 > show #33.3,5 models
    5170 
    5171 > view dc1
    5172 
    5173 > windowsize 1000 1000
    5174 
    5175 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    5176 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5177 
    5178 > view dc2
    5179 
    5180 > windowsize 1000 1000
    5181 
    5182 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    5183 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5184 
    5185 > hide models
    5186 
    5187 > show #34.3,5 models
    5188 
    5189 > view dc1
    5190 
    5191 > windowsize 1000 1000
    5192 
    5193 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    5194 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5195 
    5196 > view dc2
    5197 
    5198 > windowsize 1000 1000
    5199 
    5200 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    5201 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5202 
    5203 > hide models
    5204 
    5205 > show #13.3,5 models
    5206 
    5207 > view dc1
    5208 
    5209 > windowsize 1000 1000
    5210 
    5211 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    5212 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5213 
    5214 > view dc2
    5215 
    5216 > windowsize 1000 1000
    5217 
    5218 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    5219 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5220 
    5221 > hide models
    5222 
    5223 > show #14.3,5 models
    5224 
    5225 > ~display #14.3/w:38,49
    5226 
    5227 > view dc1
    5228 
    5229 > windowsize 1000 1000
    5230 
    5231 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    5232 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5233 
    5234 > view dc2
    5235 
    5236 > windowsize 1000 1000
    5237 
    5238 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    5239 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5240 
    5241 > graphics silhouettes true color 25,25,25,15
    5242 
    5243 > style ringFill thick
    5244 
    5245 Changed 122200 residue ring styles 
    5246 
    5247 > ~cartoon /6/3
    5248 
    5249 > display /6/3
    5250 
    5251 > ~cartoon trna
    5252 
    5253 > display trna
    5254 
    5255 > volume emmaps style surface step 1 level 4
    5256 
    5257 > surface dust emmaps size 2
    5258 
    5259 > volume emmaps surfaceSmoothing true
    5260 
    5261 > surface cap false
    5262 
    5263 > view dc3
    5264 
    5265 > hide models
    5266 
    5267 > show #30 models
    5268 
    5269 > select #30.3
    5270 
    5271 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    5272 
    5273 > windowsize 1000 1000
    5274 
    5275 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysH1a.tif
    5276 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5277 
    5278 > hide models
    5279 
    5280 > show #31 models
    5281 
    5282 > select #31.3
    5283 
    5284 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    5285 
    5286 > windowsize 1000 1000
    5287 
    5288 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysH1b.tif
    5289 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5290 
    5291 > hide models
    5292 
    5293 > show #32 models
    5294 
    5295 > select #32.3
    5296 
    5297 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    5298 
    5299 > windowsize 1000 1000
    5300 
    5301 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysH1c.tif
    5302 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5303 
    5304 > hide models
    5305 
    5306 > show #12 models
    5307 
    5308 > select #12.3
    5309 
    5310 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    5311 
    5312 > windowsize 1000 1000
    5313 
    5314 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_H1apo.tif
    5315 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5316 
    5317 > hide models
    5318 
    5319 > show #33 models
    5320 
    5321 > select #33.3
    5322 
    5323 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    5324 
    5325 > windowsize 1000 1000
    5326 
    5327 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysI1a.tif
    5328 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5329 
    5330 > hide models
    5331 
    5332 > show #34 models
    5333 
    5334 > select #34.3
    5335 
    5336 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    5337 
    5338 > windowsize 1000 1000
    5339 
    5340 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_I1bys.tif
    5341 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5342 
    5343 > hide models
    5344 
    5345 > show #13 models
    5346 
    5347 > select #13.3
    5348 
    5349 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    5350 
    5351 > windowsize 1000 1000
    5352 
    5353 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_I1spc.tif
    5354 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5355 
    5356 > hide models
    5357 
    5358 > show #14 models
    5359 
    5360 > ~display #14.3/w:38,49
    5361 
    5362 > select #14.3
    5363 
    5364 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    5365 
    5366 > windowsize 1000 1000
    5367 
    5368 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_I2fa.tif
    5369 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    5370 
    5371 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    5372 
    5373 ——— End of log from Mon May 22 11:11:24 2023 ———
    5374 
    5375 opened ChimeraX session 
    5376 
    5377 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    5378 
    5379 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    5380 
    5381 > name atomods #*.3|#*.5
    5382 
    5383 > name emmaps #*.1|#*.7|#*.8|#*.9
    5384 
    5385 > name lsu #*.5
    5386 
    5387 > name lsumap #*.8
    5388 
    5389 > name ssu #*.3
    5390 
    5391 > name ssumap #*.7
    5392 
    5393 > name ligmap #*.9
    5394 
    5395 > name rna /y,v,w,3,6,5
    5396 
    5397 > name r23s /3
    5398 
    5399 > name r16s /6
    5400 
    5401 > name r5s /5
    5402 
    5403 > name pt /y
    5404 
    5405 > name dt /v
    5406 
    5407 > name efg /x
    5408 
    5409 > name pep /p
    5410 
    5411 > name mrna /w
    5412 
    5413 > name GSP :GSP
    5414 
    5415 > name GDP :GDP
    5416 
    5417 > name GTP :GTP
    5418 
    5419 > name ntide :GTP|:GDP|:GSP
    5420 
    5421 > name spc :SCM
    5422 
    5423 > name fua :FUA
    5424 
    5425 > name par :PAR
    5426 
    5427 > name argb :LIG
    5428 
    5429 > name drugs argb|par|fua|spc
    5430 
    5431 > name D1 /x:start-293
    5432 
    5433 > name D2 /x:294-410
    5434 
    5435 > name D3 /x:411-489
    5436 
    5437 > name D4 /x:490-612
    5438 
    5439 > name D5 /x:613-end
    5440 
    5441 > name sw1 /x:38-65
    5442 
    5443 > name sw2 /x:89-108
    5444 
    5445 > name pl /x:18-25
    5446 
    5447 > name nkxd /x:142-146
    5448 
    5449 > name mg /x:MG
    5450 
    5451 > name trna /y,v
    5452 
    5453 > name anticodon /y,v:34-36
    5454 
    5455 > name antiplus /y,v:32-38
    5456 
    5457 > name cca /y,v:74-76
    5458 
    5459 > name astem /y,v:1-7,66-73
    5460 
    5461 > name darm /y,v:8-25
    5462 
    5463 > name aarm /y,v:26-43
    5464 
    5465 > name varm /y,v:44-48
    5466 
    5467 > name tarm /y,v:49-65
    5468 
    5469 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    5470 
    5471 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    5472 
    5473 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    5474 
    5475 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    5476 
    5477 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    5478 
    5479 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    5480 
    5481 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    5482 
    5483 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    5484 
    5485 > name h8 /6:144-178
    5486 
    5487 > name h14 /6:339-350
    5488 
    5489 > name h18 /6:511-540
    5490 
    5491 > name h23 /6:674-716
    5492 
    5493 > name h24 /6:769-810
    5494 
    5495 > name h27 /6:894-905
    5496 
    5497 > name h28 /6:921-937,1379-1400
    5498 
    5499 > name h29 /6:938-943,1337-1346
    5500 
    5501 > name h30 /6:945-955,1225-1235
    5502 
    5503 > name h31 /6:956-975
    5504 
    5505 > name h32 /6:984-990,1215-1221
    5506 
    5507 > name h34 /6:1045-1065,1188-1211
    5508 
    5509 > name h35 /6:1066-1073,1102-1110
    5510 
    5511 > name h36 /6:1074-1083
    5512 
    5513 > name h44 /6:1401-1502
    5514 
    5515 > name h45 /6:1506-1529
    5516 
    5517 > name aploop /6:956-959
    5518 
    5519 > name term16S /6:1503-end
    5520 
    5521 > name aphelix /6:1228-1230
    5522 
    5523 > name us3 #*.3/C
    5524 
    5525 > name us5 #*.3/E
    5526 
    5527 > name us7 #*.3/G
    5528 
    5529 > name us9 #*.3/I
    5530 
    5531 > name us11 #*.3/K
    5532 
    5533 > name us12 #*.3/L
    5534 
    5535 > name us13 #*.3/M
    5536 
    5537 > name us14 #*.3/N
    5538 
    5539 > name us15 #*.3/O
    5540 
    5541 > name us9-130 #*.3/I:130
    5542 
    5543 > name l1stalk /3:2097-2191
    5544 
    5545 > name srl /3:2652-2668
    5546 
    5547 > name H68 /3:1832-1906
    5548 
    5549 > name H69 /3:1907-1924
    5550 
    5551 > name H95 /3:2647-2673
    5552 
    5553 > name ul2 #*.5/B
    5554 
    5555 > name ul5 #*.5/E
    5556 
    5557 > name ul14 #*.5/N
    5558 
    5559 > name ul19 #*.5/S
    5560 
    5561 > name ul31 #*.5/e
    5562 
    5563 executed 70S_assign.cxc 
    5564 
    5565 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    5566 
    5567 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    5568 
    5569 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    5570 
    5571 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    5572 
    5573 > alias licorice car style protein modeh default arrows f xsect oval width 1
    5574 > thick 1;
    5575 
    5576 > dssp
    5577 
    5578 > windowsize 1000 1000
    5579 
    5580 > set bgColor white
    5581 
    5582 > lighting full
    5583 
    5584 > set silhouettes true
    5585 
    5586 > set silhouetteWidth 1.7
    5587 
    5588 > set silhouettes true
    5589 
    5590 > set silhouetteDepthJump 0.02
    5591 
    5592 > cartoon style width 2.5
    5593 
    5594 > size atomRadius 2
    5595 
    5596 Changed 1614330 atom radii 
    5597 
    5598 > nucleotides fill
    5599 
    5600 > size ions atomRadius 1.6
    5601 
    5602 Changed 31 atom radii 
    5603 
    5604 > size stickRadius 0.1
    5605 
    5606 Changed 1744812 bond radii 
    5607 
    5608 > style stick ringFill thin
    5609 
    5610 Changed 1614330 atom styles, 122200 residue ring styles 
    5611 
    5612 > show ribbons
    5613 
    5614 > hide H
    5615 
    5616 > hide :HOH
    5617 
    5618 > hide target a
    5619 
    5620 > show nucleic target a
    5621 
    5622 > show drugs target a
    5623 
    5624 > style drugs ball
    5625 
    5626 Changed 106 atom styles 
    5627 
    5628 > nucrib
    5629 
    5630 > graphics selection color black
    5631 
    5632 > volume emmaps style surface step 1 level 4
    5633 
    5634 > surface dust emmaps size 3
    5635 
    5636 > volume surfaceSmoothing true
    5637 
    5638 > cartoon tether trna shape cone opacity 1
    5639 
    5640 > dssp
    5641 
    5642 executed 70S_display.cxc 
    5643 
    5644 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    5645 
    5646 > color name efg-t 100,0,0,50
    5647 
    5648 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    5649 
    5650  
    5651 
    5652 > color name sw1-t 100,92,0,50
    5653 
    5654 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    5655 
    5656  
    5657 
    5658 > color name sw2-t 68,81,0,50
    5659 
    5660 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    5661 
    5662  
    5663 
    5664 > color name pl-t 23,59,0,50
    5665 
    5666 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    5667 
    5668  
    5669 
    5670 > color name d1-t 100,18,4,50
    5671 
    5672 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    5673 
    5674  
    5675 
    5676 > color name d2-t 100,40,4,50
    5677 
    5678 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    5679 
    5680  
    5681 
    5682 > color name d3-t 100,27,36,50
    5683 
    5684 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    5685 
    5686  
    5687 
    5688 > color name d4-t 80,0,23,50
    5689 
    5690 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    5691 
    5692  
    5693 
    5694 > color name d5-t 100,60,4,50
    5695 
    5696 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    5697 
    5698  
    5699 
    5700 > color name fa-t 100,90,4,50
    5701 
    5702 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    5703 
    5704  
    5705 
    5706 > color name gtp-t 45,53,60,50
    5707 
    5708 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    5709 
    5710  
    5711 
    5712 > color name mg-t 1,39,16,50
    5713 
    5714 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    5715 
    5716  
    5717 
    5718 > color name spc-t 100,0,0,50
    5719 
    5720 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    5721 
    5722  
    5723 
    5724 > color name argb-t 50,0,50,50
    5725 
    5726 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    5727 
    5728  
    5729 
    5730 > color name g-1t 98,42,30,50
    5731 
    5732 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    5733 
    5734  
    5735 
    5736 > color name g-2t 95,35,25,50
    5737 
    5738 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    5739 
    5740  
    5741 
    5742 > color name g-3t 92,28,20,50
    5743 
    5744 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    5745 
    5746  
    5747 
    5748 > color name g-4t 89,21,15,50
    5749 
    5750 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    5751 
    5752  
    5753 
    5754 > color name g-5t 86,14,10,50
    5755 
    5756 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    5757 
    5758  
    5759 
    5760 > color name g-6t 83,7,5,50
    5761 
    5762 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    5763 
    5764  
    5765 
    5766 > color name g-7t 80,0,0,50
    5767 
    5768 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    5769 
    5770  
    5771 
    5772 > color name p-t 40,60,2,50
    5773 
    5774 Color 'p-t' is 50% transparent: rgba(40%, 60%, 2%, 50%) hex: #66990580
    5775 
    5776  
    5777 
    5778 > color name p-c 40,60,2,100
    5779 
    5780 Color 'p-c' is opaque: rgb(40%, 60%, 2%) hex: #669905
    5781 
    5782  
    5783 
    5784 > color name p-1t 4,34,1,50
    5785 
    5786 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    5787 
    5788  
    5789 
    5790 > color name p-2t 12,39,1,50
    5791 
    5792 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    5793 
    5794  
    5795 
    5796 > color name p-3t 20,44,1,50
    5797 
    5798 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    5799 
    5800  
    5801 
    5802 > color name p-4t 28,49,1,50
    5803 
    5804 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    5805 
    5806  
    5807 
    5808 > color name p-5t 36,54,2,50
    5809 
    5810 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    5811 
    5812  
    5813 
    5814 > color name p-6t 44,59,2,50
    5815 
    5816 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    5817 
    5818  
    5819 
    5820 > color name p-7t 52,64,2,50
    5821 
    5822 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    5823 
    5824  
    5825 
    5826 > color name p-8t 60,69,2,50
    5827 
    5828 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    5829 
    5830  
    5831 
    5832 > color name p-9t 68,74,3,50
    5833 
    5834 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    5835 
    5836  
    5837 
    5838 > color name p-10t 76,79,3,50
    5839 
    5840 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    5841 
    5842  
    5843 
    5844 > color name p-11t 84,84,3,50
    5845 
    5846 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    5847 
    5848  
    5849 
    5850 > color name d-t 100,75,4,50
    5851 
    5852 Color 'd-t' is 50% transparent: rgba(100%, 75%, 4%, 50%) hex: #ffbf0a80
    5853 
    5854  
    5855 
    5856 > color name d-c 100,75,4,100
    5857 
    5858 Color 'd-c' is opaque: rgb(100%, 75%, 4%) hex: #ffbf0a
    5859 
    5860  
    5861 
    5862 > color name d-1t 100,100,4,50
    5863 
    5864 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    5865 
    5866  
    5867 
    5868 > color name d-2t 100,93,4,50
    5869 
    5870 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    5871 
    5872  
    5873 
    5874 > color name d-3t 100,86,4,50
    5875 
    5876 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    5877 
    5878  
    5879 
    5880 > color name d-4t 100,79,4,50
    5881 
    5882 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    5883 
    5884  
    5885 
    5886 > color name d-5t 100,72,4,50
    5887 
    5888 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    5889 
    5890  
    5891 
    5892 > color name d-6t 100,65,4,50
    5893 
    5894 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    5895 
    5896  
    5897 
    5898 > color name d-7t 100,58,4,50
    5899 
    5900 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    5901 
    5902  
    5903 
    5904 > color name d-8t 100,51,4,50
    5905 
    5906 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    5907 
    5908  
    5909 
    5910 > color name d-9t 100,44,4,50
    5911 
    5912 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    5913 
    5914  
    5915 
    5916 > color name d-10t 100,37,4,50
    5917 
    5918 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    5919 
    5920  
    5921 
    5922 > color name d-11t 100,30,4,50
    5923 
    5924 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    5925 
    5926  
    5927 
    5928 > color name m-t 95,43,62,50
    5929 
    5930 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    5931 
    5932  
    5933 
    5934 > color name m-c 95,43,62,100
    5935 
    5936 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    5937 
    5938  
    5939 
    5940 > color name m-1t 100,80,90,50
    5941 
    5942 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    5943 
    5944  
    5945 
    5946 > color name m-2t 98,76,87,50
    5947 
    5948 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    5949 
    5950  
    5951 
    5952 > color name m-3t 96,72,84,50
    5953 
    5954 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    5955 
    5956  
    5957 
    5958 > color name m-4t 94,68,81,50
    5959 
    5960 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    5961 
    5962  
    5963 
    5964 > color name m-5t 92,64,78,50
    5965 
    5966 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    5967 
    5968  
    5969 
    5970 > color name m-6t 90,60,75,50
    5971 
    5972 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    5973 
    5974  
    5975 
    5976 > color name m-7t 88,56,72,50
    5977 
    5978 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    5979 
    5980  
    5981 
    5982 > color name m-8t 86,52,69,50
    5983 
    5984 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    5985 
    5986  
    5987 
    5988 > color name m-9t 84,48,66,50
    5989 
    5990 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    5991 
    5992  
    5993 
    5994 > color name m-10t 82,44,63,50
    5995 
    5996 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    5997 
    5998  
    5999 
    6000 > color name m-11t 80,40,60,50
    6001 
    6002 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    6003 
    6004  
    6005 
    6006 > color name head-t 71,51,66,50
    6007 
    6008 Color 'head-t' is 50% transparent: rgba(71%, 51%, 66%, 50%) hex: #b582a880
    6009 
    6010  
    6011 
    6012 > color name head-c 89,89,100,100
    6013 
    6014 Color 'head-c' is opaque: rgb(89%, 89%, 100%) hex: #e3e3ff
    6015 
    6016  
    6017 
    6018 > color name headfa-t 80,79,100,50
    6019 
    6020 Color 'headfa-t' is 50% transparent: rgba(80%, 79%, 100%, 50%) hex: #ccc9ff80
    6021 
    6022  
    6023 
    6024 > color name headblue-t 59,78,94,50
    6025 
    6026 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    6027 
    6028  
    6029 
    6030 > color name headh1-t 41,64,100,50
    6031 
    6032 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    6033 
    6034  
    6035 
    6036 > color name headh2-t 50,70,100,50
    6037 
    6038 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    6039 
    6040  
    6041 
    6042 > color name headgray-t 60,60,60,50
    6043 
    6044 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    6045 
    6046  
    6047 
    6048 > color name darkhead-s 58,34,52,100
    6049 
    6050 Color 'darkhead-s' is opaque: rgb(58%, 34%, 52%) hex: #945785
    6051 
    6052  
    6053 
    6054 > color name bodywhite-t 90,90,90,50
    6055 
    6056 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    6057 #e6e6e680
    6058 
    6059  
    6060 
    6061 > color name rps-t 75,88,93,50
    6062 
    6063 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    6064 
    6065  
    6066 
    6067 > color name ssu-t 57,71,75,50
    6068 
    6069 Color 'ssu-t' is 50% transparent: rgba(57%, 71%, 75%, 50%) hex: #91b5bf80
    6070 
    6071  
    6072 
    6073 > color name h18-t 31,59,68,50
    6074 
    6075 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    6076 
    6077  
    6078 
    6079 > color name h18-c 31,59,68,100
    6080 
    6081 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    6082 
    6083  
    6084 
    6085 > color name h23-t 18,36,100,50
    6086 
    6087 Color 'h23-t' is 50% transparent: rgba(18%, 36%, 100%, 50%) hex: #2e5cff80
    6088 
    6089  
    6090 
    6091 > color name h23-c 18,36,100,100
    6092 
    6093 Color 'h23-c' is opaque: rgb(18%, 36%, 100%) hex: #2e5cff
    6094 
    6095  
    6096 
    6097 > color name h24-t 50,70,90,50
    6098 
    6099 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    6100 
    6101  
    6102 
    6103 > color name h24-c 50,70,90,100
    6104 
    6105 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    6106 
    6107  
    6108 
    6109 > color name h28-t 0,24,57,50
    6110 
    6111 Color 'h28-t' is 50% transparent: rgba(0%, 24%, 57%, 50%) hex: #003d9180
    6112 
    6113  
    6114 
    6115 > color name h28-c 0,24,57,100
    6116 
    6117 Color 'h28-c' is opaque: rgb(0%, 24%, 57%) hex: #003d91
    6118 
    6119  
    6120 
    6121 > color name h29-t 80,69,92,50
    6122 
    6123 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    6124 
    6125  
    6126 
    6127 > color name h29-c 80,69,92,100
    6128 
    6129 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    6130 
    6131  
    6132 
    6133 > color name h30-t 40,40,59,50
    6134 
    6135 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    6136 
    6137  
    6138 
    6139 > color name h30-c 40,40,59,100
    6140 
    6141 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    6142 
    6143  
    6144 
    6145 > color name h31-t 45,18,59,50
    6146 
    6147 Color 'h31-t' is 50% transparent: rgba(45%, 18%, 59%, 50%) hex: #732e9680
    6148 
    6149  
    6150 
    6151 > color name h31-c 45,18,59,100
    6152 
    6153 Color 'h31-c' is opaque: rgb(45%, 18%, 59%) hex: #732e96
    6154 
    6155  
    6156 
    6157 > color name h34-t 59,18,59,50
    6158 
    6159 Color 'h34-t' is 50% transparent: rgba(59%, 18%, 59%, 50%) hex: #962e9680
    6160 
    6161  
    6162 
    6163 > color name h34-c 59,18,59,100
    6164 
    6165 Color 'h34-c' is opaque: rgb(59%, 18%, 59%) hex: #962e96
    6166 
    6167  
    6168 
    6169 > color name h35-t 50,22,45,50
    6170 
    6171 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    6172 
    6173  
    6174 
    6175 > color name h35-c 50,22,45,100
    6176 
    6177 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    6178 
    6179  
    6180 
    6181 > color name h44-t 27,50,80,50
    6182 
    6183 Color 'h44-t' is 50% transparent: rgba(27%, 50%, 80%, 50%) hex: #4580cc80
    6184 
    6185  
    6186 
    6187 > color name h44-c 27,50,80,100
    6188 
    6189 Color 'h44-c' is opaque: rgb(27%, 50%, 80%) hex: #4580cc
    6190 
    6191  
    6192 
    6193 > color name aploop-t 27,0,50,50
    6194 
    6195 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    6196 
    6197  
    6198 
    6199 > color name term16-t 40,64,64,50
    6200 
    6201 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    6202 
    6203  
    6204 
    6205 > color name uS3-t 64,41,82,50
    6206 
    6207 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    6208 
    6209  
    6210 
    6211 > color name uS5-t 0,50,45,50
    6212 
    6213 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    6214 
    6215  
    6216 
    6217 > color name gray-t 70,70,70,50
    6218 
    6219 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    6220 
    6221  
    6222 
    6223 > color name hx68-t 50,50,50,50
    6224 
    6225 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    6226 
    6227  
    6228 
    6229 > color name hx68-c 50,50,50,100
    6230 
    6231 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    6232 
    6233  
    6234 
    6235 > color name hx69-t 40,40,40,50
    6236 
    6237 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    6238 
    6239  
    6240 
    6241 > color name hx69-c 40,40,40,100
    6242 
    6243 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    6244 
    6245  
    6246 
    6247 > color name srl-t 50,50,50,50
    6248 
    6249 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    6250 
    6251  
    6252 
    6253 > color name srl-t 50,50,50,100
    6254 
    6255 Color 'srl-t' is opaque: gray(50%) hex: #808080
    6256 
    6257  
    6258 
    6259 > color name lightgrayt 83,83,83,50
    6260 
    6261 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    6262 
    6263  
    6264 
    6265 > color name silvert 75,75,75,50
    6266 
    6267 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    6268 
    6269  
    6270 
    6271 > color name grayt 50,50,50,50
    6272 
    6273 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    6274 
    6275  
    6276 
    6277 > color name lightcyant 88,100,100,50
    6278 
    6279 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    6280 #e0ffff80
    6281 
    6282  
    6283 
    6284 > color name yellowt 100,90,0,50
    6285 
    6286 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    6287 
    6288  
    6289 
    6290 > color name deeppinkt 100,8,58,50
    6291 
    6292 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    6293 
    6294  
    6295 
    6296 > color name oranget 100,65,0,50
    6297 
    6298 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    6299 
    6300  
    6301 
    6302 > color name yellowgreent 60,80,20,50
    6303 
    6304 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    6305 #99cc3380
    6306 
    6307  
    6308 
    6309 > color name darkmagentat 54,0,54,50
    6310 
    6311 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    6312 #8a008a80
    6313 
    6314  
    6315 
    6316 > color name orchidt 86,44,84,50
    6317 
    6318 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    6319 
    6320  
    6321 
    6322 > color name paleturquoiset 69,93,93,50
    6323 
    6324 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    6325 #b0eded80
    6326 
    6327  
    6328 
    6329 > color name pinkt 100,75,80,50
    6330 
    6331 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    6332 
    6333  
    6334 
    6335 > color name darkgreent 0,39,0,50
    6336 
    6337 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    6338 
    6339  
    6340 
    6341 > color name limegreent 20,80,20,50
    6342 
    6343 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    6344 
    6345  
    6346 
    6347 > color name turquoiset 25,88,82,50
    6348 
    6349 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    6350 
    6351  
    6352 
    6353 > color name tealt 0,50,50,50
    6354 
    6355 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    6356 
    6357  
    6358 
    6359 > color name darkoranget 100,50,0,50
    6360 
    6361 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    6362 #ff800080
    6363 
    6364  
    6365 
    6366 > color name lightyellowt 100,100,50,50
    6367 
    6368 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    6369 #ffff8080
    6370 
    6371  
    6372 
    6373 > color name goldt 100,75,0,50
    6374 
    6375 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    6376 
    6377  
    6378 
    6379 > color name plumt 87,63,87,50
    6380 
    6381 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    6382 
    6383  
    6384 
    6385 > color name ssubluet 68,86,90,50
    6386 
    6387 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    6388 
    6389  
    6390 
    6391 > color name p-prect 10,41,0,50
    6392 
    6393 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    6394 
    6395  
    6396 
    6397 > color name p-h2t 23,59,0,50
    6398 
    6399 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    6400 
    6401  
    6402 
    6403 > color name p-h1t 40,73,0,50
    6404 
    6405 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    6406 
    6407  
    6408 
    6409 > color name p-h1c 40,73,0,100
    6410 
    6411 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    6412 
    6413  
    6414 
    6415 > color name p-spct 68,81,0,50
    6416 
    6417 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    6418 
    6419  
    6420 
    6421 > color name p-spcc 68,81,0,100
    6422 
    6423 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    6424 
    6425  
    6426 
    6427 > color name p-fat 82,92,0,50
    6428 
    6429 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    6430 
    6431  
    6432 
    6433 > color name p-postt 100,92,0,50
    6434 
    6435 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    6436 
    6437  
    6438 
    6439 > color name d-t 100,80,4,50
    6440 
    6441 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    6442 
    6443  
    6444 
    6445 > color name d-prect 95,100,50,50
    6446 
    6447 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    6448 
    6449  
    6450 
    6451 > color name d-h2t 100,90,4,50
    6452 
    6453 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    6454 
    6455  
    6456 
    6457 > color name d-h1t 100,80,4,50
    6458 
    6459 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    6460 
    6461  
    6462 
    6463 > color name d-spct 100,70,4,50
    6464 
    6465 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    6466 
    6467  
    6468 
    6469 > color name d-fat 100,55,4,50
    6470 
    6471 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    6472 
    6473  
    6474 
    6475 > color name d-fac 100,55,4,100
    6476 
    6477 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    6478 
    6479  
    6480 
    6481 > color name d-postt 100,40,4,50
    6482 
    6483 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    6484 
    6485  
    6486 
    6487 > color name m-t 95,43,62,50
    6488 
    6489 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    6490 
    6491  
    6492 
    6493 > color name m-prect 100,85,95,50
    6494 
    6495 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    6496 
    6497  
    6498 
    6499 > color name m-h2t 100,85,95,50
    6500 
    6501 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    6502 
    6503  
    6504 
    6505 > color name m-h1t 100,75,95,50
    6506 
    6507 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    6508 
    6509  
    6510 
    6511 > color name m-spct 89,63,75,50
    6512 
    6513 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    6514 
    6515  
    6516 
    6517 > color name m-fat 95,51,75,50
    6518 
    6519 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    6520 
    6521  
    6522 
    6523 > color name m-fac 95,51,75,100
    6524 
    6525 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    6526 
    6527  
    6528 
    6529 > color name m-postt 95,43,62,50
    6530 
    6531 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    6532 
    6533  
    6534 executed 70S_colors.cxc 
    6535 
    6536 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    6537 
    6538 > color 100,100,100,50
    6539 
    6540 > color lsu silvert
    6541 
    6542 > color /3 lightgrayt
    6543 
    6544 > color /5 lightgrayt
    6545 
    6546 > color ssu ssu-t
    6547 
    6548 > color head head-t
    6549 
    6550 > color efg efg-t
    6551 
    6552 > color dt d-t
    6553 
    6554 > color pt p-t
    6555 
    6556 > color pep p-t
    6557 
    6558 > color mrna m-t
    6559 
    6560 executed 70S_colorstandard.cxc 
    6561 
    6562 > windowsize 1000 1000
    6563 
    6564 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    6565 
    6566 > color h18 h18-t
    6567 
    6568 > color h23 h23-t
    6569 
    6570 > color h24 h24-t
    6571 
    6572 > color h28 h28-t
    6573 
    6574 > color h29 h29-t
    6575 
    6576 > color h30 h30-t
    6577 
    6578 > color h31 h31-t
    6579 
    6580 > color h34 h34-t
    6581 
    6582 > color h35 h35-t
    6583 
    6584 > color h36 h36-t
    6585 
    6586 > color h44 h44-t
    6587 
    6588 > color H69 hx69-t
    6589 
    6590 executed 70S_color_helices.cxc 
    6591 
    6592 > color h30|h36|h35 head-t
    6593 
    6594 > view dc3
    6595 
    6596 > surface cap true
    6597 
    6598 > color zone #12.1 near #12.3,5 distance 5
    6599 
    6600 > color zone #13.1 near #13.3,5 distance 5
    6601 
    6602 > color zone #14.1 near #14.3,5 distance 5
    6603 
    6604 > color zone #30.1 near #30.3,5 distance 5
    6605 
    6606 > color zone #31.1 near #31.3,5 distance 5
    6607 
    6608 > color zone #32.1 near #32.3,5 distance 5
    6609 
    6610 > color zone #33.1 near #33.3,5 distance 5
    6611 
    6612 > color zone #34.1 near #34.3,5 distance 5
    6613 
    6614 > color h30|h36|h35 head-c
    6615 
    6616 > color h28 h28-c
    6617 
    6618 > color h29 h29-c
    6619 
    6620 > color h34 h34-c
    6621 
    6622 > color h23 h23-c
    6623 
    6624 > color h24 h24-c
    6625 
    6626 > color h31 h31-c
    6627 
    6628 > hide #!100
    6629 
    6630 > hide #101 models
    6631 
    6632 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    6633 
    6634 > transparency #*.3 0 target abc
    6635 
    6636 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    6637 
    6638 > color h18 h18-c
    6639 
    6640 > color h23 h23-c
    6641 
    6642 > color h24 h24-c
    6643 
    6644 > color h28 h28-c
    6645 
    6646 > color h29 h29-c
    6647 
    6648 > color h30 h30-c
    6649 
    6650 > color h31 h31-c
    6651 
    6652 > color h34 h34-c
    6653 
    6654 > color h35 h35-c
    6655 
    6656 > color h44 h44-c
    6657 
    6658 > color H69 hx69-c
    6659 
    6660 executed 70S_color_helices-s.cxc 
    6661 
    6662 > color /v d-c
    6663 
    6664 > color /y p-c
    6665 
    6666 > color /w m-c
    6667 
    6668 executed gtpys_dc.cxc 
    6669 
    6670 > surface cap true
    6671 
    6672 > lighting gentle
    6673 
    6674 > lighting intensity .2
    6675 
    6676 > size stickRadius 0.17
    6677 
    6678 Changed 1744812 bond radii 
    6679 
    6680 > nucribthin
    6681 
    6682 > style ringFill thin
    6683 
    6684 Changed 122200 residue ring styles 
    6685 
    6686 > graphics silhouettes true color black
    6687 
    6688 > ~select
    6689 
    6690 Nothing selected 
    6691 
    6692 > ~select
    6693 
    6694 Nothing selected 
    6695 
    6696 > ~ribbon
    6697 
    6698 > ~display
    6699 
    6700 > ribbon
    6701 
    6702 > ~ribbon mrna
    6703 
    6704 > display mrna
    6705 
    6706 > display antiplus
    6707 
    6708 > display /x:505-514,584
    6709 
    6710 > display /6:1492,1493,530,532,1054,1400,1397
    6711 
    6712 > display /3:1913
    6713 
    6714 > display #*.3/L:44
    6715 
    6716 > hide models
    6717 
    6718 > show #31.3,5 models
    6719 
    6720 > view dc1
    6721 
    6722 > windowsize 1000 1000
    6723 
    6724 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    6725 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6726 
    6727 > view dc2
    6728 
    6729 > windowsize 1000 1000
    6730 
    6731 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    6732 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6733 
    6734 > hide models
    6735 
    6736 > show #32.3,5 models
    6737 
    6738 > windowsize 1000 1000
    6739 
    6740 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    6741 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6742 
    6743 > view dc2
    6744 
    6745 > windowsize 1000 1000
    6746 
    6747 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    6748 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6749 
    6750 > hide models
    6751 
    6752 > show #12.3,5 models
    6753 
    6754 > view dc1
    6755 
    6756 > windowsize 1000 1000
    6757 
    6758 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    6759 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6760 
    6761 > view dc2
    6762 
    6763 > windowsize 1000 1000
    6764 
    6765 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    6766 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6767 
    6768 > hide models
    6769 
    6770 > show #33.3,5 models
    6771 
    6772 > view dc1
    6773 
    6774 > windowsize 1000 1000
    6775 
    6776 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    6777 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6778 
    6779 > view dc2
    6780 
    6781 > windowsize 1000 1000
    6782 
    6783 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    6784 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6785 
    6786 > hide models
    6787 
    6788 > show #34.3,5 models
    6789 
    6790 > view dc1
    6791 
    6792 > windowsize 1000 1000
    6793 
    6794 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    6795 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6796 
    6797 > view dc2
    6798 
    6799 > windowsize 1000 1000
    6800 
    6801 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    6802 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6803 
    6804 > hide models
    6805 
    6806 > show #13.3,5 models
    6807 
    6808 > view dc1
    6809 
    6810 > windowsize 1000 1000
    6811 
    6812 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    6813 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6814 
    6815 > view dc2
    6816 
    6817 > windowsize 1000 1000
    6818 
    6819 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    6820 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6821 
    6822 > hide models
    6823 
    6824 > show #14.3,5 models
    6825 
    6826 > ~display #14.3/w:38,49
    6827 
    6828 > view dc1
    6829 
    6830 > windowsize 1000 1000
    6831 
    6832 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    6833 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6834 
    6835 > view dc2
    6836 
    6837 > windowsize 1000 1000
    6838 
    6839 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    6840 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6841 
    6842 > graphics silhouettes true color 25,25,25,15
    6843 
    6844 > style ringFill thick
    6845 
    6846 Changed 122200 residue ring styles 
    6847 
    6848 > ~cartoon /6/3
    6849 
    6850 > display /6/3
    6851 
    6852 > ~cartoon trna
    6853 
    6854 > display trna
    6855 
    6856 > volume emmaps style surface step 1 level 4
    6857 
    6858 > surface dust emmaps size 2
    6859 
    6860 > volume emmaps surfaceSmoothing true
    6861 
    6862 > surface cap false
    6863 
    6864 > view dc3
    6865 
    6866 > hide models
    6867 
    6868 > show #30 models
    6869 
    6870 > select #30.3
    6871 
    6872 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    6873 
    6874 > windowsize 1000 1000
    6875 
    6876 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysH1a.tif
    6877 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6878 
    6879 > hide models
    6880 
    6881 > show #31 models
    6882 
    6883 > select #31.3
    6884 
    6885 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    6886 
    6887 > windowsize 1000 1000
    6888 
    6889 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysH1b.tif
    6890 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6891 
    6892 > hide models
    6893 
    6894 > show #32 models
    6895 
    6896 > select #32.3
    6897 
    6898 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    6899 
    6900 > windowsize 1000 1000
    6901 
    6902 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysH1c.tif
    6903 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6904 
    6905 > hide models
    6906 
    6907 > show #12 models
    6908 
    6909 > select #12.3
    6910 
    6911 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    6912 
    6913 > windowsize 1000 1000
    6914 
    6915 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_H1apo.tif
    6916 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6917 
    6918 > hide models
    6919 
    6920 > show #33 models
    6921 
    6922 > select #33.3
    6923 
    6924 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    6925 
    6926 > windowsize 1000 1000
    6927 
    6928 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_ysI1a.tif
    6929 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6930 
    6931 > hide models
    6932 
    6933 > show #34 models
    6934 
    6935 > select #34.3
    6936 
    6937 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    6938 
    6939 > windowsize 1000 1000
    6940 
    6941 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_I1bys.tif
    6942 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6943 
    6944 > hide models
    6945 
    6946 > show #13 models
    6947 
    6948 > select #13.3
    6949 
    6950 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    6951 
    6952 > windowsize 1000 1000
    6953 
    6954 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_I1spc.tif
    6955 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6956 
    6957 > hide models
    6958 
    6959 > show #14 models
    6960 
    6961 > ~display #14.3/w:38,49
    6962 
    6963 > select #14.3
    6964 
    6965 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    6966 
    6967 > windowsize 1000 1000
    6968 
    6969 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig4_I2fa.tif
    6970 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    6971 
    6972 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    6973 
    6974 ——— End of log from Mon May 22 15:00:55 2023 ———
    6975 
    6976 opened ChimeraX session 
    6977 
    6978 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    6979 
    6980 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    6981 
    6982 > name atomods #*.3|#*.5
    6983 
    6984 > name emmaps #*.1|#*.7|#*.8|#*.9
    6985 
    6986 > name lsu #*.5
    6987 
    6988 > name lsumap #*.8
    6989 
    6990 > name ssu #*.3
    6991 
    6992 > name ssumap #*.7
    6993 
    6994 > name ligmap #*.9
    6995 
    6996 > name rna /y,v,w,3,6,5
    6997 
    6998 > name r23s /3
    6999 
    7000 > name r16s /6
    7001 
    7002 > name r5s /5
    7003 
    7004 > name pt /y
    7005 
    7006 > name dt /v
    7007 
    7008 > name efg /x
    7009 
    7010 > name pep /p
    7011 
    7012 > name mrna /w
    7013 
    7014 > name GSP :GSP
    7015 
    7016 > name GDP :GDP
    7017 
    7018 > name GTP :GTP
    7019 
    7020 > name ntide :GTP|:GDP|:GSP
    7021 
    7022 > name spc :SCM
    7023 
    7024 > name fua :FUA
    7025 
    7026 > name par :PAR
    7027 
    7028 > name argb :LIG
    7029 
    7030 > name drugs argb|par|fua|spc
    7031 
    7032 > name D1 /x:start-293
    7033 
    7034 > name D2 /x:294-410
    7035 
    7036 > name D3 /x:411-489
    7037 
    7038 > name D4 /x:490-612
    7039 
    7040 > name D5 /x:613-end
    7041 
    7042 > name sw1 /x:38-65
    7043 
    7044 > name sw2 /x:89-108
    7045 
    7046 > name pl /x:18-25
    7047 
    7048 > name nkxd /x:142-146
    7049 
    7050 > name mg /x:MG
    7051 
    7052 > name trna /y,v
    7053 
    7054 > name anticodon /y,v:34-36
    7055 
    7056 > name antiplus /y,v:32-38
    7057 
    7058 > name cca /y,v:74-76
    7059 
    7060 > name astem /y,v:1-7,66-73
    7061 
    7062 > name darm /y,v:8-25
    7063 
    7064 > name aarm /y,v:26-43
    7065 
    7066 > name varm /y,v:44-48
    7067 
    7068 > name tarm /y,v:49-65
    7069 
    7070 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    7071 
    7072 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    7073 
    7074 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    7075 
    7076 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    7077 
    7078 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    7079 
    7080 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    7081 
    7082 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    7083 
    7084 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    7085 
    7086 > name h8 /6:144-178
    7087 
    7088 > name h14 /6:339-350
    7089 
    7090 > name h18 /6:511-540
    7091 
    7092 > name h23 /6:674-716
    7093 
    7094 > name h24 /6:769-810
    7095 
    7096 > name h27 /6:894-905
    7097 
    7098 > name h28 /6:921-937,1379-1400
    7099 
    7100 > name h29 /6:938-943,1337-1346
    7101 
    7102 > name h30 /6:945-955,1225-1235
    7103 
    7104 > name h31 /6:956-975
    7105 
    7106 > name h32 /6:984-990,1215-1221
    7107 
    7108 > name h34 /6:1045-1065,1188-1211
    7109 
    7110 > name h35 /6:1066-1073,1102-1110
    7111 
    7112 > name h36 /6:1074-1083
    7113 
    7114 > name h44 /6:1401-1502
    7115 
    7116 > name h45 /6:1506-1529
    7117 
    7118 > name aploop /6:956-959
    7119 
    7120 > name term16S /6:1503-end
    7121 
    7122 > name aphelix /6:1228-1230
    7123 
    7124 > name us3 #*.3/C
    7125 
    7126 > name us5 #*.3/E
    7127 
    7128 > name us7 #*.3/G
    7129 
    7130 > name us9 #*.3/I
    7131 
    7132 > name us11 #*.3/K
    7133 
    7134 > name us12 #*.3/L
    7135 
    7136 > name us13 #*.3/M
    7137 
    7138 > name us14 #*.3/N
    7139 
    7140 > name us15 #*.3/O
    7141 
    7142 > name us9-130 #*.3/I:130
    7143 
    7144 > name l1stalk /3:2097-2191
    7145 
    7146 > name srl /3:2652-2668
    7147 
    7148 > name H68 /3:1832-1906
    7149 
    7150 > name H69 /3:1907-1924
    7151 
    7152 > name H95 /3:2647-2673
    7153 
    7154 > name ul2 #*.5/B
    7155 
    7156 > name ul5 #*.5/E
    7157 
    7158 > name ul14 #*.5/N
    7159 
    7160 > name ul19 #*.5/S
    7161 
    7162 > name ul31 #*.5/e
    7163 
    7164 executed 70S_assign.cxc 
    7165 
    7166 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    7167 
    7168 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    7169 
    7170 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    7171 
    7172 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    7173 
    7174 > alias licorice car style protein modeh default arrows f xsect oval width 1
    7175 > thick 1;
    7176 
    7177 > dssp
    7178 
    7179 > windowsize 1000 1000
    7180 
    7181 > set bgColor white
    7182 
    7183 > lighting full
    7184 
    7185 > set silhouettes true
    7186 
    7187 > set silhouetteWidth 1.7
    7188 
    7189 > set silhouettes true
    7190 
    7191 > set silhouetteDepthJump 0.02
    7192 
    7193 > cartoon style width 2.5
    7194 
    7195 > size atomRadius 2
    7196 
    7197 Changed 1614330 atom radii 
    7198 
    7199 > nucleotides fill
    7200 
    7201 > size ions atomRadius 1.6
    7202 
    7203 Changed 31 atom radii 
    7204 
    7205 > size stickRadius 0.1
    7206 
    7207 Changed 1744812 bond radii 
    7208 
    7209 > style stick ringFill thin
    7210 
    7211 Changed 1614330 atom styles, 122200 residue ring styles 
    7212 
    7213 > show ribbons
    7214 
    7215 > hide H
    7216 
    7217 > hide :HOH
    7218 
    7219 > hide target a
    7220 
    7221 > show nucleic target a
    7222 
    7223 > show drugs target a
    7224 
    7225 > style drugs ball
    7226 
    7227 Changed 106 atom styles 
    7228 
    7229 > nucrib
    7230 
    7231 > graphics selection color black
    7232 
    7233 > volume emmaps style surface step 1 level 4
    7234 
    7235 > surface dust emmaps size 3
    7236 
    7237 > volume surfaceSmoothing true
    7238 
    7239 > cartoon tether trna shape cone opacity 1
    7240 
    7241 > dssp
    7242 
    7243 executed 70S_display.cxc 
    7244 
    7245 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    7246 
    7247 > color name efg-t 100,0,0,50
    7248 
    7249 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    7250 
    7251  
    7252 
    7253 > color name sw1-t 100,92,0,50
    7254 
    7255 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    7256 
    7257  
    7258 
    7259 > color name sw2-t 68,81,0,50
    7260 
    7261 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    7262 
    7263  
    7264 
    7265 > color name pl-t 23,59,0,50
    7266 
    7267 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    7268 
    7269  
    7270 
    7271 > color name d1-t 100,18,4,50
    7272 
    7273 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    7274 
    7275  
    7276 
    7277 > color name d2-t 100,40,4,50
    7278 
    7279 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    7280 
    7281  
    7282 
    7283 > color name d3-t 100,27,36,50
    7284 
    7285 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    7286 
    7287  
    7288 
    7289 > color name d4-t 80,0,23,50
    7290 
    7291 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    7292 
    7293  
    7294 
    7295 > color name d5-t 100,60,4,50
    7296 
    7297 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    7298 
    7299  
    7300 
    7301 > color name fa-t 100,90,4,50
    7302 
    7303 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    7304 
    7305  
    7306 
    7307 > color name gtp-t 45,53,60,50
    7308 
    7309 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    7310 
    7311  
    7312 
    7313 > color name mg-t 1,39,16,50
    7314 
    7315 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    7316 
    7317  
    7318 
    7319 > color name spc-t 100,0,0,50
    7320 
    7321 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    7322 
    7323  
    7324 
    7325 > color name argb-t 50,0,50,50
    7326 
    7327 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    7328 
    7329  
    7330 
    7331 > color name g-1t 98,42,30,50
    7332 
    7333 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    7334 
    7335  
    7336 
    7337 > color name g-2t 95,35,25,50
    7338 
    7339 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    7340 
    7341  
    7342 
    7343 > color name g-3t 92,28,20,50
    7344 
    7345 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    7346 
    7347  
    7348 
    7349 > color name g-4t 89,21,15,50
    7350 
    7351 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    7352 
    7353  
    7354 
    7355 > color name g-5t 86,14,10,50
    7356 
    7357 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    7358 
    7359  
    7360 
    7361 > color name g-6t 83,7,5,50
    7362 
    7363 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    7364 
    7365  
    7366 
    7367 > color name g-7t 80,0,0,50
    7368 
    7369 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    7370 
    7371  
    7372 
    7373 > color name p-t 40,60,2,50
    7374 
    7375 Color 'p-t' is 50% transparent: rgba(40%, 60%, 2%, 50%) hex: #66990580
    7376 
    7377  
    7378 
    7379 > color name p-c 40,60,2,100
    7380 
    7381 Color 'p-c' is opaque: rgb(40%, 60%, 2%) hex: #669905
    7382 
    7383  
    7384 
    7385 > color name p-1t 4,34,1,50
    7386 
    7387 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    7388 
    7389  
    7390 
    7391 > color name p-2t 12,39,1,50
    7392 
    7393 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    7394 
    7395  
    7396 
    7397 > color name p-3t 20,44,1,50
    7398 
    7399 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    7400 
    7401  
    7402 
    7403 > color name p-4t 28,49,1,50
    7404 
    7405 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    7406 
    7407  
    7408 
    7409 > color name p-5t 36,54,2,50
    7410 
    7411 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    7412 
    7413  
    7414 
    7415 > color name p-6t 44,59,2,50
    7416 
    7417 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    7418 
    7419  
    7420 
    7421 > color name p-7t 52,64,2,50
    7422 
    7423 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    7424 
    7425  
    7426 
    7427 > color name p-8t 60,69,2,50
    7428 
    7429 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    7430 
    7431  
    7432 
    7433 > color name p-9t 68,74,3,50
    7434 
    7435 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    7436 
    7437  
    7438 
    7439 > color name p-10t 76,79,3,50
    7440 
    7441 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    7442 
    7443  
    7444 
    7445 > color name p-11t 84,84,3,50
    7446 
    7447 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    7448 
    7449  
    7450 
    7451 > color name d-t 100,75,4,50
    7452 
    7453 Color 'd-t' is 50% transparent: rgba(100%, 75%, 4%, 50%) hex: #ffbf0a80
    7454 
    7455  
    7456 
    7457 > color name d-c 100,75,4,100
    7458 
    7459 Color 'd-c' is opaque: rgb(100%, 75%, 4%) hex: #ffbf0a
    7460 
    7461  
    7462 
    7463 > color name d-1t 100,100,4,50
    7464 
    7465 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    7466 
    7467  
    7468 
    7469 > color name d-2t 100,93,4,50
    7470 
    7471 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    7472 
    7473  
    7474 
    7475 > color name d-3t 100,86,4,50
    7476 
    7477 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    7478 
    7479  
    7480 
    7481 > color name d-4t 100,79,4,50
    7482 
    7483 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    7484 
    7485  
    7486 
    7487 > color name d-5t 100,72,4,50
    7488 
    7489 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    7490 
    7491  
    7492 
    7493 > color name d-6t 100,65,4,50
    7494 
    7495 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    7496 
    7497  
    7498 
    7499 > color name d-7t 100,58,4,50
    7500 
    7501 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    7502 
    7503  
    7504 
    7505 > color name d-8t 100,51,4,50
    7506 
    7507 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    7508 
    7509  
    7510 
    7511 > color name d-9t 100,44,4,50
    7512 
    7513 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    7514 
    7515  
    7516 
    7517 > color name d-10t 100,37,4,50
    7518 
    7519 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    7520 
    7521  
    7522 
    7523 > color name d-11t 100,30,4,50
    7524 
    7525 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    7526 
    7527  
    7528 
    7529 > color name m-t 95,43,62,50
    7530 
    7531 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    7532 
    7533  
    7534 
    7535 > color name m-c 95,43,62,100
    7536 
    7537 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    7538 
    7539  
    7540 
    7541 > color name m-1t 100,80,90,50
    7542 
    7543 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    7544 
    7545  
    7546 
    7547 > color name m-2t 98,76,87,50
    7548 
    7549 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    7550 
    7551  
    7552 
    7553 > color name m-3t 96,72,84,50
    7554 
    7555 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    7556 
    7557  
    7558 
    7559 > color name m-4t 94,68,81,50
    7560 
    7561 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    7562 
    7563  
    7564 
    7565 > color name m-5t 92,64,78,50
    7566 
    7567 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    7568 
    7569  
    7570 
    7571 > color name m-6t 90,60,75,50
    7572 
    7573 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    7574 
    7575  
    7576 
    7577 > color name m-7t 88,56,72,50
    7578 
    7579 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    7580 
    7581  
    7582 
    7583 > color name m-8t 86,52,69,50
    7584 
    7585 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    7586 
    7587  
    7588 
    7589 > color name m-9t 84,48,66,50
    7590 
    7591 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    7592 
    7593  
    7594 
    7595 > color name m-10t 82,44,63,50
    7596 
    7597 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    7598 
    7599  
    7600 
    7601 > color name m-11t 80,40,60,50
    7602 
    7603 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    7604 
    7605  
    7606 
    7607 > color name head-t 71,51,66,50
    7608 
    7609 Color 'head-t' is 50% transparent: rgba(71%, 51%, 66%, 50%) hex: #b582a880
    7610 
    7611  
    7612 
    7613 > color name head-c 89,89,100,100
    7614 
    7615 Color 'head-c' is opaque: rgb(89%, 89%, 100%) hex: #e3e3ff
    7616 
    7617  
    7618 
    7619 > color name headfa-t 80,79,100,50
    7620 
    7621 Color 'headfa-t' is 50% transparent: rgba(80%, 79%, 100%, 50%) hex: #ccc9ff80
    7622 
    7623  
    7624 
    7625 > color name headblue-t 59,78,94,50
    7626 
    7627 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    7628 
    7629  
    7630 
    7631 > color name headh1-t 41,64,100,50
    7632 
    7633 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    7634 
    7635  
    7636 
    7637 > color name headh2-t 50,70,100,50
    7638 
    7639 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    7640 
    7641  
    7642 
    7643 > color name headgray-t 60,60,60,50
    7644 
    7645 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    7646 
    7647  
    7648 
    7649 > color name darkhead-s 58,34,52,100
    7650 
    7651 Color 'darkhead-s' is opaque: rgb(58%, 34%, 52%) hex: #945785
    7652 
    7653  
    7654 
    7655 > color name bodywhite-t 90,90,90,50
    7656 
    7657 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    7658 #e6e6e680
    7659 
    7660  
    7661 
    7662 > color name rps-t 75,88,93,50
    7663 
    7664 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    7665 
    7666  
    7667 
    7668 > color name ssu-t 57,71,75,50
    7669 
    7670 Color 'ssu-t' is 50% transparent: rgba(57%, 71%, 75%, 50%) hex: #91b5bf80
    7671 
    7672  
    7673 
    7674 > color name h18-t 31,59,68,50
    7675 
    7676 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    7677 
    7678  
    7679 
    7680 > color name h18-c 31,59,68,100
    7681 
    7682 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    7683 
    7684  
    7685 
    7686 > color name h23-t 18,36,100,50
    7687 
    7688 Color 'h23-t' is 50% transparent: rgba(18%, 36%, 100%, 50%) hex: #2e5cff80
    7689 
    7690  
    7691 
    7692 > color name h23-c 18,36,100,100
    7693 
    7694 Color 'h23-c' is opaque: rgb(18%, 36%, 100%) hex: #2e5cff
    7695 
    7696  
    7697 
    7698 > color name h24-t 50,70,90,50
    7699 
    7700 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    7701 
    7702  
    7703 
    7704 > color name h24-c 50,70,90,100
    7705 
    7706 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    7707 
    7708  
    7709 
    7710 > color name h28-t 0,24,57,50
    7711 
    7712 Color 'h28-t' is 50% transparent: rgba(0%, 24%, 57%, 50%) hex: #003d9180
    7713 
    7714  
    7715 
    7716 > color name h28-c 0,24,57,100
    7717 
    7718 Color 'h28-c' is opaque: rgb(0%, 24%, 57%) hex: #003d91
    7719 
    7720  
    7721 
    7722 > color name h29-t 80,69,92,50
    7723 
    7724 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    7725 
    7726  
    7727 
    7728 > color name h29-c 80,69,92,100
    7729 
    7730 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    7731 
    7732  
    7733 
    7734 > color name h30-t 40,40,59,50
    7735 
    7736 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    7737 
    7738  
    7739 
    7740 > color name h30-c 40,40,59,100
    7741 
    7742 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    7743 
    7744  
    7745 
    7746 > color name h31-t 45,18,59,50
    7747 
    7748 Color 'h31-t' is 50% transparent: rgba(45%, 18%, 59%, 50%) hex: #732e9680
    7749 
    7750  
    7751 
    7752 > color name h31-c 45,18,59,100
    7753 
    7754 Color 'h31-c' is opaque: rgb(45%, 18%, 59%) hex: #732e96
    7755 
    7756  
    7757 
    7758 > color name h34-t 59,18,59,50
    7759 
    7760 Color 'h34-t' is 50% transparent: rgba(59%, 18%, 59%, 50%) hex: #962e9680
    7761 
    7762  
    7763 
    7764 > color name h34-c 59,18,59,100
    7765 
    7766 Color 'h34-c' is opaque: rgb(59%, 18%, 59%) hex: #962e96
    7767 
    7768  
    7769 
    7770 > color name h35-t 50,22,45,50
    7771 
    7772 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    7773 
    7774  
    7775 
    7776 > color name h35-c 50,22,45,100
    7777 
    7778 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    7779 
    7780  
    7781 
    7782 > color name h44-t 27,50,80,50
    7783 
    7784 Color 'h44-t' is 50% transparent: rgba(27%, 50%, 80%, 50%) hex: #4580cc80
    7785 
    7786  
    7787 
    7788 > color name h44-c 27,50,80,100
    7789 
    7790 Color 'h44-c' is opaque: rgb(27%, 50%, 80%) hex: #4580cc
    7791 
    7792  
    7793 
    7794 > color name aploop-t 27,0,50,50
    7795 
    7796 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    7797 
    7798  
    7799 
    7800 > color name term16-t 40,64,64,50
    7801 
    7802 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    7803 
    7804  
    7805 
    7806 > color name uS3-t 64,41,82,50
    7807 
    7808 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    7809 
    7810  
    7811 
    7812 > color name uS5-t 0,50,45,50
    7813 
    7814 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    7815 
    7816  
    7817 
    7818 > color name gray-t 70,70,70,50
    7819 
    7820 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    7821 
    7822  
    7823 
    7824 > color name hx68-t 50,50,50,50
    7825 
    7826 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    7827 
    7828  
    7829 
    7830 > color name hx68-c 50,50,50,100
    7831 
    7832 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    7833 
    7834  
    7835 
    7836 > color name hx69-t 40,40,40,50
    7837 
    7838 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    7839 
    7840  
    7841 
    7842 > color name hx69-c 40,40,40,100
    7843 
    7844 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    7845 
    7846  
    7847 
    7848 > color name srl-t 50,50,50,50
    7849 
    7850 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    7851 
    7852  
    7853 
    7854 > color name srl-t 50,50,50,100
    7855 
    7856 Color 'srl-t' is opaque: gray(50%) hex: #808080
    7857 
    7858  
    7859 
    7860 > color name lightgrayt 83,83,83,50
    7861 
    7862 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    7863 
    7864  
    7865 
    7866 > color name silvert 75,75,75,50
    7867 
    7868 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    7869 
    7870  
    7871 
    7872 > color name grayt 50,50,50,50
    7873 
    7874 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    7875 
    7876  
    7877 
    7878 > color name lightcyant 88,100,100,50
    7879 
    7880 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    7881 #e0ffff80
    7882 
    7883  
    7884 
    7885 > color name yellowt 100,90,0,50
    7886 
    7887 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    7888 
    7889  
    7890 
    7891 > color name deeppinkt 100,8,58,50
    7892 
    7893 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    7894 
    7895  
    7896 
    7897 > color name oranget 100,65,0,50
    7898 
    7899 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    7900 
    7901  
    7902 
    7903 > color name yellowgreent 60,80,20,50
    7904 
    7905 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    7906 #99cc3380
    7907 
    7908  
    7909 
    7910 > color name darkmagentat 54,0,54,50
    7911 
    7912 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    7913 #8a008a80
    7914 
    7915  
    7916 
    7917 > color name orchidt 86,44,84,50
    7918 
    7919 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    7920 
    7921  
    7922 
    7923 > color name paleturquoiset 69,93,93,50
    7924 
    7925 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    7926 #b0eded80
    7927 
    7928  
    7929 
    7930 > color name pinkt 100,75,80,50
    7931 
    7932 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    7933 
    7934  
    7935 
    7936 > color name darkgreent 0,39,0,50
    7937 
    7938 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    7939 
    7940  
    7941 
    7942 > color name limegreent 20,80,20,50
    7943 
    7944 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    7945 
    7946  
    7947 
    7948 > color name turquoiset 25,88,82,50
    7949 
    7950 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    7951 
    7952  
    7953 
    7954 > color name tealt 0,50,50,50
    7955 
    7956 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    7957 
    7958  
    7959 
    7960 > color name darkoranget 100,50,0,50
    7961 
    7962 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    7963 #ff800080
    7964 
    7965  
    7966 
    7967 > color name lightyellowt 100,100,50,50
    7968 
    7969 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    7970 #ffff8080
    7971 
    7972  
    7973 
    7974 > color name goldt 100,75,0,50
    7975 
    7976 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    7977 
    7978  
    7979 
    7980 > color name plumt 87,63,87,50
    7981 
    7982 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    7983 
    7984  
    7985 
    7986 > color name ssubluet 68,86,90,50
    7987 
    7988 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    7989 
    7990  
    7991 
    7992 > color name p-prect 10,41,0,50
    7993 
    7994 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    7995 
    7996  
    7997 
    7998 > color name p-h2t 23,59,0,50
    7999 
    8000 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    8001 
    8002  
    8003 
    8004 > color name p-h1t 40,73,0,50
    8005 
    8006 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    8007 
    8008  
    8009 
    8010 > color name p-h1c 40,73,0,100
    8011 
    8012 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    8013 
    8014  
    8015 
    8016 > color name p-spct 68,81,0,50
    8017 
    8018 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    8019 
    8020  
    8021 
    8022 > color name p-spcc 68,81,0,100
    8023 
    8024 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    8025 
    8026  
    8027 
    8028 > color name p-fat 82,92,0,50
    8029 
    8030 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    8031 
    8032  
    8033 
    8034 > color name p-postt 100,92,0,50
    8035 
    8036 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    8037 
    8038  
    8039 
    8040 > color name d-t 100,80,4,50
    8041 
    8042 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    8043 
    8044  
    8045 
    8046 > color name d-prect 95,100,50,50
    8047 
    8048 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    8049 
    8050  
    8051 
    8052 > color name d-h2t 100,90,4,50
    8053 
    8054 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    8055 
    8056  
    8057 
    8058 > color name d-h1t 100,80,4,50
    8059 
    8060 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    8061 
    8062  
    8063 
    8064 > color name d-spct 100,70,4,50
    8065 
    8066 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    8067 
    8068  
    8069 
    8070 > color name d-fat 100,55,4,50
    8071 
    8072 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    8073 
    8074  
    8075 
    8076 > color name d-fac 100,55,4,100
    8077 
    8078 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    8079 
    8080  
    8081 
    8082 > color name d-postt 100,40,4,50
    8083 
    8084 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    8085 
    8086  
    8087 
    8088 > color name m-t 95,43,62,50
    8089 
    8090 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    8091 
    8092  
    8093 
    8094 > color name m-prect 100,85,95,50
    8095 
    8096 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    8097 
    8098  
    8099 
    8100 > color name m-h2t 100,85,95,50
    8101 
    8102 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    8103 
    8104  
    8105 
    8106 > color name m-h1t 100,75,95,50
    8107 
    8108 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    8109 
    8110  
    8111 
    8112 > color name m-spct 89,63,75,50
    8113 
    8114 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    8115 
    8116  
    8117 
    8118 > color name m-fat 95,51,75,50
    8119 
    8120 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    8121 
    8122  
    8123 
    8124 > color name m-fac 95,51,75,100
    8125 
    8126 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    8127 
    8128  
    8129 
    8130 > color name m-postt 95,43,62,50
    8131 
    8132 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    8133 
    8134  
    8135 executed 70S_colors.cxc 
    8136 
    8137 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    8138 
    8139 > color 100,100,100,50
    8140 
    8141 > color lsu silvert
    8142 
    8143 > color /3 lightgrayt
    8144 
    8145 > color /5 lightgrayt
    8146 
    8147 > color ssu ssu-t
    8148 
    8149 > color head head-t
    8150 
    8151 > color efg efg-t
    8152 
    8153 > color dt d-t
    8154 
    8155 > color pt p-t
    8156 
    8157 > color pep p-t
    8158 
    8159 > color mrna m-t
    8160 
    8161 executed 70S_colorstandard.cxc 
    8162 
    8163 > windowsize 1000 1000
    8164 
    8165 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    8166 
    8167 > color h18 h18-t
    8168 
    8169 > color h23 h23-t
    8170 
    8171 > color h24 h24-t
    8172 
    8173 > color h28 h28-t
    8174 
    8175 > color h29 h29-t
    8176 
    8177 > color h30 h30-t
    8178 
    8179 > color h31 h31-t
    8180 
    8181 > color h34 h34-t
    8182 
    8183 > color h35 h35-t
    8184 
    8185 > color h36 h36-t
    8186 
    8187 > color h44 h44-t
    8188 
    8189 > color H69 hx69-t
    8190 
    8191 executed 70S_color_helices.cxc 
    8192 
    8193 > color h30|h36|h35 head-t
    8194 
    8195 > view dc3
    8196 
    8197 > surface cap true
    8198 
    8199 > color zone #12.1 near #12.3,5 distance 5
    8200 
    8201 > color zone #13.1 near #13.3,5 distance 5
    8202 
    8203 > color zone #14.1 near #14.3,5 distance 5
    8204 
    8205 > color zone #30.1 near #30.3,5 distance 5
    8206 
    8207 > color zone #31.1 near #31.3,5 distance 5
    8208 
    8209 > color zone #32.1 near #32.3,5 distance 5
    8210 
    8211 > color zone #33.1 near #33.3,5 distance 5
    8212 
    8213 > color zone #34.1 near #34.3,5 distance 5
    8214 
    8215 > color h30|h36|h35 head-c
    8216 
    8217 > color h28 h28-c
    8218 
    8219 > color h29 h29-c
    8220 
    8221 > color h34 h34-c
    8222 
    8223 > color h23 h23-c
    8224 
    8225 > color h24 h24-c
    8226 
    8227 > color h31 h31-c
    8228 
    8229 > hide #!100
    8230 
    8231 > hide #101 models
    8232 
    8233 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    8234 
    8235 > transparency #*.3 0 target abc
    8236 
    8237 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    8238 
    8239 > color h18 h18-c
    8240 
    8241 > color h23 h23-c
    8242 
    8243 > color h24 h24-c
    8244 
    8245 > color h28 h28-c
    8246 
    8247 > color h29 h29-c
    8248 
    8249 > color h30 h30-c
    8250 
    8251 > color h31 h31-c
    8252 
    8253 > color h34 h34-c
    8254 
    8255 > color h35 h35-c
    8256 
    8257 > color h44 h44-c
    8258 
    8259 > color H69 hx69-c
    8260 
    8261 executed 70S_color_helices-s.cxc 
    8262 
    8263 > color /v d-c
    8264 
    8265 > color /y p-c
    8266 
    8267 > color /w m-c
    8268 
    8269 executed gtpys_dc.cxc 
    8270 
    8271 > surface cap true
    8272 
    8273 > lighting gentle
    8274 
    8275 > lighting intensity .2
    8276 
    8277 > size stickRadius 0.17
    8278 
    8279 Changed 1744812 bond radii 
    8280 
    8281 > nucribthin
    8282 
    8283 > style ringFill thin
    8284 
    8285 Changed 122200 residue ring styles 
    8286 
    8287 > graphics silhouettes true color black
    8288 
    8289 > ~select
    8290 
    8291 Nothing selected 
    8292 
    8293 > ~select
    8294 
    8295 Nothing selected 
    8296 
    8297 > ~ribbon
    8298 
    8299 > ~display
    8300 
    8301 > ribbon
    8302 
    8303 > ~ribbon mrna
    8304 
    8305 > display mrna
    8306 
    8307 > display antiplus
    8308 
    8309 > display /x:505-514,584
    8310 
    8311 > display /6:1492,1493,530,532,1054,1400,1397
    8312 
    8313 > display /3:1913
    8314 
    8315 > display #*.3/L:44
    8316 
    8317 > hide models
    8318 
    8319 > show #31.3,5 models
    8320 
    8321 > view dc1
    8322 
    8323 > windowsize 1000 1000
    8324 
    8325 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    8326 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8327 
    8328 > view dc2
    8329 
    8330 > windowsize 1000 1000
    8331 
    8332 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    8333 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8334 
    8335 > hide models
    8336 
    8337 > show #32.3,5 models
    8338 
    8339 > windowsize 1000 1000
    8340 
    8341 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    8342 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8343 
    8344 > view dc2
    8345 
    8346 > windowsize 1000 1000
    8347 
    8348 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    8349 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8350 
    8351 > hide models
    8352 
    8353 > show #12.3,5 models
    8354 
    8355 > view dc1
    8356 
    8357 > windowsize 1000 1000
    8358 
    8359 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    8360 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8361 
    8362 > view dc2
    8363 
    8364 > windowsize 1000 1000
    8365 
    8366 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    8367 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8368 
    8369 > hide models
    8370 
    8371 > show #33.3,5 models
    8372 
    8373 > view dc1
    8374 
    8375 > windowsize 1000 1000
    8376 
    8377 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    8378 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8379 
    8380 > view dc2
    8381 
    8382 > windowsize 1000 1000
    8383 
    8384 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    8385 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8386 
    8387 > hide models
    8388 
    8389 > show #34.3,5 models
    8390 
    8391 > view dc1
    8392 
    8393 > windowsize 1000 1000
    8394 
    8395 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    8396 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8397 
    8398 > view dc2
    8399 
    8400 > windowsize 1000 1000
    8401 
    8402 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    8403 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8404 
    8405 > hide models
    8406 
    8407 > show #13.3,5 models
    8408 
    8409 > view dc1
    8410 
    8411 > windowsize 1000 1000
    8412 
    8413 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    8414 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8415 
    8416 > view dc2
    8417 
    8418 > windowsize 1000 1000
    8419 
    8420 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    8421 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8422 
    8423 > hide models
    8424 
    8425 > show #14.3,5 models
    8426 
    8427 > ~display #14.3/w:38,49
    8428 
    8429 > view dc1
    8430 
    8431 > windowsize 1000 1000
    8432 
    8433 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    8434 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8435 
    8436 > view dc2
    8437 
    8438 > windowsize 1000 1000
    8439 
    8440 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    8441 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8442 
    8443 > graphics silhouettes true color 25,25,25,15
    8444 
    8445 > style ringFill thick
    8446 
    8447 Changed 122200 residue ring styles 
    8448 
    8449 > ~cartoon /6/3
    8450 
    8451 > display /6/3
    8452 
    8453 > ~cartoon trna
    8454 
    8455 > display trna
    8456 
    8457 > volume emmaps style surface step 1 level 3
    8458 
    8459 > surface dust emmaps size 2
    8460 
    8461 > volume emmaps surfaceSmoothing true
    8462 
    8463 > view dc3
    8464 
    8465 > hide models
    8466 
    8467 > show #30 models
    8468 
    8469 > select #30.3
    8470 
    8471 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    8472 
    8473 > windowsize 1000 1000
    8474 
    8475 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    8476 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8477 
    8478 > hide models
    8479 
    8480 > show #31 models
    8481 
    8482 > select #31.3
    8483 
    8484 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    8485 
    8486 > windowsize 1000 1000
    8487 
    8488 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    8489 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8490 
    8491 > hide models
    8492 
    8493 > show #32 models
    8494 
    8495 > select #32.3
    8496 
    8497 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    8498 
    8499 > windowsize 1000 1000
    8500 
    8501 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    8502 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8503 
    8504 > hide models
    8505 
    8506 > show #12 models
    8507 
    8508 > select #12.3
    8509 
    8510 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    8511 
    8512 > windowsize 1000 1000
    8513 
    8514 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    8515 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8516 
    8517 > hide models
    8518 
    8519 > show #33 models
    8520 
    8521 > select #33.3
    8522 
    8523 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    8524 
    8525 > windowsize 1000 1000
    8526 
    8527 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    8528 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8529 
    8530 > hide models
    8531 
    8532 > show #34 models
    8533 
    8534 > select #34.3
    8535 
    8536 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    8537 
    8538 > windowsize 1000 1000
    8539 
    8540 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    8541 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8542 
    8543 > hide models
    8544 
    8545 > show #13 models
    8546 
    8547 > select #13.3
    8548 
    8549 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    8550 
    8551 > windowsize 1000 1000
    8552 
    8553 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    8554 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8555 
    8556 > hide models
    8557 
    8558 > show #14 models
    8559 
    8560 > ~display #14.3/w:38,49
    8561 
    8562 > select #14.3
    8563 
    8564 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    8565 
    8566 > windowsize 1000 1000
    8567 
    8568 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    8569 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    8570 
    8571 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    8572 
    8573 ——— End of log from Tue May 23 15:01:38 2023 ———
    8574 
    8575 opened ChimeraX session 
    8576 
    8577 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    8578 
    8579 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/open/70S_open_ys-FR.cxc
    8580 
    8581 > close #*.9
    8582 
    8583 > open /data/EmilyRundlet/ChimeraX_70S/Models/For_ChimeraX/ys-H1a_50S.pdb name
    8584 > temp
    8585 
    8586 Summary of feedback from opening
    8587 /data/EmilyRundlet/ChimeraX_70S/Models/For_ChimeraX/ys-H1a_50S.pdb 
    8588 --- 
    8589 warnings | Ignored bad PDB record found on line 4 
    8590 LINK ZN ZN Le0201 SG CY 04 
    8591  
    8592 Ignored bad PDB record found on line 5 
    8593 LINK ZN ZN Le0201 SG CY 03 
    8594  
    8595 Ignored bad PDB record found on line 6 
    8596 LINK ZN ZN Le0201 SG CY 01 
    8597  
    8598 Ignored bad PDB record found on line 7 
    8599 LINK ZN ZN Le0201 SG CY 01 
    8600  
    8601 Ignored bad PDB record found on line 8 
    8602 LINK ZN ZN Lj0101 ND1 HI 03 
    8603  
    8604 3 messages similar to the above omitted 
    8605 Cannot find LINK/SSBOND residue THR (1033509) 
    8606 Cannot find LINK/SSBOND residue ASP (2432820) 
    8607 Cannot find LINK/SSBOND residue ZN (567641) 
    8608  
    8609 Chain information for temp #1 
    8610 --- 
    8611 Chain | Description 
    8612 3 | No description available 
    8613 5 | No description available 
    8614 B | No description available 
    8615 C | No description available 
    8616 D | No description available 
    8617 E | No description available 
    8618 F | No description available 
    8619 I | No description available 
    8620 J | No description available 
    8621 K | No description available 
    8622 M | No description available 
    8623 N | No description available 
    8624 O | No description available 
    8625 P | No description available 
    8626 Q | No description available 
    8627 R | No description available 
    8628 S | No description available 
    8629 T | No description available 
    8630 U | No description available 
    8631 V | No description available 
    8632 W | No description available 
    8633 X | No description available 
    8634 Y | No description available 
    8635 a | No description available 
    8636 b | No description available 
    8637 c | No description available 
    8638 d | No description available 
    8639 e | No description available 
    8640 f | No description available 
    8641 g | No description available 
    8642 h | No description available 
    8643 i | No description available 
    8644 j | No description available 
    8645  
    8646 
    8647 > rename #1 id #5
    8648 
    8649 > open /data/EmilyRundlet/ChimeraX_70S/Maps/Normalized/ys-H1a-FR-j1481.mrc
    8650 > name ys-H1a-FR
    8651 
    8652 Opened ys-H1a-FR as #1, grid size 512,512,512, pixel 0.828, shown at level
    8653 2.51, step 2, values float32 
    8654 
    8655 > rename #1 id #30.9
    8656 
    8657 > open /data/EmilyRundlet/ChimeraX_70S/Maps/Normalized/ys-H1b-FR-j1483.mrc
    8658 > name ys-H1b-FR
    8659 
    8660 Opened ys-H1b-FR as #1, grid size 512,512,512, pixel 0.828, shown at level
    8661 2.7, step 2, values float32 
    8662 
    8663 > rename #1 id #31.9
    8664 
    8665 > open /data/EmilyRundlet/ChimeraX_70S/Maps/Normalized/ys-H1c-FR-j1482.mrc
    8666 > name ys-H1c-FR
    8667 
    8668 Opened ys-H1c-FR as #1, grid size 512,512,512, pixel 0.828, shown at level
    8669 3.19, step 2, values float32 
    8670 
    8671 > rename #1 id #32.9
    8672 
    8673 > open /data/EmilyRundlet/ChimeraX_70S/Maps/Normalized/ys-I1a-FR-j1463.mrc
    8674 > name ys-I1a-FR
    8675 
    8676 Opened ys-I1a-FR as #1, grid size 512,512,512, pixel 0.828, shown at level
    8677 2.77, step 2, values float32 
    8678 
    8679 > rename #1 id #33.9
    8680 
    8681 > open /data/EmilyRundlet/ChimeraX_70S/Maps/Normalized/ys-I1b-FR-j1480.mrc
    8682 > name ys-I1b-FR
    8683 
    8684 Opened ys-I1b-FR as #1, grid size 512,512,512, pixel 0.828, shown at level
    8685 2.85, step 2, values float32 
    8686 
    8687 > rename #1 id #34.9
    8688 
    8689 > matchmaker #5 to #101 matrix Nucleic bring #30.9#31.9#32.9#33.9#34.9
    8690 
    8691 Parameters 
    8692 --- 
    8693 Chain pairing | bb 
    8694 Alignment algorithm | Needleman-Wunsch 
    8695 Similarity matrix | Nucleic 
    8696 SS fraction | 0.3 
    8697 Gap open (HH/SS/other) | 18/18/6 
    8698 Gap extend | 1 
    8699 SS matrix |  |  | H | S | O 
    8700 ---|---|---|--- 
    8701 H | 6 | -9 | -6 
    8702 S |  | 6 | -6 
    8703 O |  |  | 4 
    8704 Iteration cutoff | 2 
    8705  
    8706 Matchmaker prec_7n1p_50S.pdb, chain 3 (#101) with temp, chain 3 (#5), sequence
    8707 alignment score = 11576.1 
    8708 RMSD between 2631 pruned atom pairs is 0.435 angstroms; (across all 2904
    8709 pairs: 4.260) 
    8710  
    8711 
    8712 > fitmap #30.9 inMap #30.1
    8713 
    8714 Fit map ys-H1a-FR in map ys-H1a using 166686 points 
    8715 correlation = 0.6595, correlation about mean = 0.4608, overlap = 4.206e+06 
    8716 steps = 108, shift = 1.58, angle = 0.287 degrees 
    8717  
    8718 Position of ys-H1a-FR (#30.9) relative to ys-H1a (#30.1) coordinates: 
    8719 Matrix rotation and translation 
    8720 0.99999419 -0.00188033 0.00284156 -1.36612431 
    8721 0.00186826 0.99998925 0.00424284 -2.05591047 
    8722 -0.00284950 -0.00423750 0.99998696 1.98261366 
    8723 Axis -0.77950287 0.52311563 0.34456540 
    8724 Axis point 0.00000000 411.43571461 568.52467822 
    8725 Rotation angle (degrees) 0.31166671 
    8726 Shift along axis 0.67255899 
    8727  
    8728 
    8729 > fitmap #31.9 inMap #31.1
    8730 
    8731 Fit map ys-H1b-FR in map ys-H1b using 167237 points 
    8732 correlation = 0.6442, correlation about mean = 0.4419, overlap = 3.556e+06 
    8733 steps = 72, shift = 1.73, angle = 0.494 degrees 
    8734  
    8735 Position of ys-H1b-FR (#31.9) relative to ys-H1b (#31.1) coordinates: 
    8736 Matrix rotation and translation 
    8737 0.99999206 -0.00128451 0.00377177 -1.78650463 
    8738 0.00126248 0.99998217 0.00583606 -2.30610968 
    8739 -0.00377920 -0.00583125 0.99997586 3.01719192 
    8740 Axis -0.82576679 0.53442799 0.18026628 
    8741 Axis point 0.00000000 491.15795199 468.68843127 
    8742 Rotation angle (degrees) 0.40477093 
    8743 Shift along axis 0.78668460 
    8744  
    8745 
    8746 > fitmap #32.9 inMap #32.1
    8747 
    8748 Fit map ys-H1c-FR in map ys-H1c using 167194 points 
    8749 correlation = 0.6227, correlation about mean = 0.4175, overlap = 3.553e+06 
    8750 steps = 56, shift = 1.94, angle = 0.7 degrees 
    8751  
    8752 Position of ys-H1c-FR (#32.9) relative to ys-H1c (#32.1) coordinates: 
    8753 Matrix rotation and translation 
    8754 0.99996796 -0.00741502 0.00301718 -0.26967669 
    8755 0.00739798 0.99995684 0.00562016 -3.78464930 
    8756 -0.00305873 -0.00559766 0.99997965 2.77101272 
    8757 Axis -0.57381767 0.31079667 0.75771941 
    8758 Axis point 557.13279871 44.65610659 0.00000000 
    8759 Rotation angle (degrees) 0.56005967 
    8760 Shift along axis 1.07813898 
    8761  
    8762 
    8763 > fitmap #33.9 inMap #33.1
    8764 
    8765 Fit map ys-I1a-FR in map ys-I1a using 167729 points 
    8766 correlation = 0.6637, correlation about mean = 0.455, overlap = 3.95e+06 
    8767 steps = 52, shift = 1.64, angle = 0.273 degrees 
    8768  
    8769 Position of ys-I1a-FR (#33.9) relative to ys-I1a (#33.1) coordinates: 
    8770 Matrix rotation and translation 
    8771 0.99999574 -0.00240882 0.00164763 -0.94698611 
    8772 0.00239992 0.99998264 0.00538143 -2.37716350 
    8773 -0.00166056 -0.00537745 0.99998416 1.95578637 
    8774 Axis -0.87898171 0.27027364 0.39286552 
    8775 Axis point -0.00000000 292.24753435 490.80474838 
    8776 Rotation angle (degrees) 0.35065686 
    8777 Shift along axis 0.95825985 
    8778  
    8779 
    8780 > fitmap #34.9 inMap #34.1
    8781 
    8782 Fit map ys-I1b-FR in map ys-I1b using 167690 points 
    8783 correlation = 0.6598, correlation about mean = 0.4592, overlap = 3.758e+06 
    8784 steps = 84, shift = 1.89, angle = 0.486 degrees 
    8785  
    8786 Position of ys-I1b-FR (#34.9) relative to ys-I1b (#34.1) coordinates: 
    8787 Matrix rotation and translation 
    8788 0.99998896 -0.00274581 0.00381201 -1.41268312 
    8789 0.00272542 0.99998201 0.00534388 -2.32097267 
    8790 -0.00382662 -0.00533343 0.99997846 2.42224389 
    8791 Axis -0.75071818 0.53706898 0.38468054 
    8792 Axis point 0.00000000 398.30808633 510.61790347 
    8793 Rotation angle (degrees) 0.40745677 
    8794 Shift along axis 0.74579457 
    8795  
    8796 
    8797 > close #5
    8798 
    8799 executed 70S_open_ys-FR.cxc 
    8800 
    8801 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    8802 
    8803 > name atomods #*.3|#*.5
    8804 
    8805 > name emmaps #*.1|#*.7|#*.8|#*.9
    8806 
    8807 > name lsu #*.5
    8808 
    8809 > name lsumap #*.8
    8810 
    8811 > name ssu #*.3
    8812 
    8813 > name ssumap #*.7
    8814 
    8815 > name ligmap #*.9
    8816 
    8817 > name rna /y,v,w,3,6,5
    8818 
    8819 > name r23s /3
    8820 
    8821 > name r16s /6
    8822 
    8823 > name r5s /5
    8824 
    8825 > name pt /y
    8826 
    8827 > name dt /v
    8828 
    8829 > name efg /x
    8830 
    8831 > name pep /p
    8832 
    8833 > name mrna /w
    8834 
    8835 > name GSP :GSP
    8836 
    8837 > name GDP :GDP
    8838 
    8839 > name GTP :GTP
    8840 
    8841 > name ntide :GTP|:GDP|:GSP
    8842 
    8843 > name spc :SCM
    8844 
    8845 > name fua :FUA
    8846 
    8847 > name par :PAR
    8848 
    8849 > name argb :LIG
    8850 
    8851 > name drugs argb|par|fua|spc
    8852 
    8853 > name D1 /x:start-293
    8854 
    8855 > name D2 /x:294-410
    8856 
    8857 > name D3 /x:411-489
    8858 
    8859 > name D4 /x:490-612
    8860 
    8861 > name D5 /x:613-end
    8862 
    8863 > name sw1 /x:38-65
    8864 
    8865 > name sw2 /x:89-108
    8866 
    8867 > name pl /x:18-25
    8868 
    8869 > name nkxd /x:142-146
    8870 
    8871 > name mg /x:MG
    8872 
    8873 > name trna /y,v
    8874 
    8875 > name anticodon /y,v:34-36
    8876 
    8877 > name antiplus /y,v:32-38
    8878 
    8879 > name cca /y,v:74-76
    8880 
    8881 > name astem /y,v:1-7,66-73
    8882 
    8883 > name darm /y,v:8-25
    8884 
    8885 > name aarm /y,v:26-43
    8886 
    8887 > name varm /y,v:44-48
    8888 
    8889 > name tarm /y,v:49-65
    8890 
    8891 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    8892 
    8893 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    8894 
    8895 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    8896 
    8897 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    8898 
    8899 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    8900 
    8901 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    8902 
    8903 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    8904 
    8905 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    8906 
    8907 > name h8 /6:144-178
    8908 
    8909 > name h14 /6:339-350
    8910 
    8911 > name h18 /6:511-540
    8912 
    8913 > name h23 /6:674-716
    8914 
    8915 > name h24 /6:769-810
    8916 
    8917 > name h27 /6:894-905
    8918 
    8919 > name h28 /6:921-937,1379-1400
    8920 
    8921 > name h29 /6:938-943,1337-1346
    8922 
    8923 > name h30 /6:945-955,1225-1235
    8924 
    8925 > name h31 /6:956-975
    8926 
    8927 > name h32 /6:984-990,1215-1221
    8928 
    8929 > name h34 /6:1045-1065,1188-1211
    8930 
    8931 > name h35 /6:1066-1073,1102-1110
    8932 
    8933 > name h36 /6:1074-1083
    8934 
    8935 > name h44 /6:1401-1502
    8936 
    8937 > name h45 /6:1506-1529
    8938 
    8939 > name aploop /6:956-959
    8940 
    8941 > name term16S /6:1503-end
    8942 
    8943 > name aphelix /6:1228-1230
    8944 
    8945 > name us3 #*.3/C
    8946 
    8947 > name us5 #*.3/E
    8948 
    8949 > name us7 #*.3/G
    8950 
    8951 > name us9 #*.3/I
    8952 
    8953 > name us11 #*.3/K
    8954 
    8955 > name us12 #*.3/L
    8956 
    8957 > name us13 #*.3/M
    8958 
    8959 > name us14 #*.3/N
    8960 
    8961 > name us15 #*.3/O
    8962 
    8963 > name us9-130 #*.3/I:130
    8964 
    8965 > name l1stalk /3:2097-2191
    8966 
    8967 > name srl /3:2652-2668
    8968 
    8969 > name H68 /3:1832-1906
    8970 
    8971 > name H69 /3:1907-1924
    8972 
    8973 > name H95 /3:2647-2673
    8974 
    8975 > name ul2 #*.5/B
    8976 
    8977 > name ul5 #*.5/E
    8978 
    8979 > name ul14 #*.5/N
    8980 
    8981 > name ul19 #*.5/S
    8982 
    8983 > name ul31 #*.5/e
    8984 
    8985 executed 70S_assign.cxc 
    8986 
    8987 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    8988 
    8989 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    8990 
    8991 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    8992 
    8993 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    8994 
    8995 > alias licorice car style protein modeh default arrows f xsect oval width 1
    8996 > thick 1;
    8997 
    8998 > dssp
    8999 
    9000 > windowsize 1000 1000
    9001 
    9002 > set bgColor white
    9003 
    9004 > lighting full
    9005 
    9006 > set silhouettes true
    9007 
    9008 > set silhouetteWidth 1.7
    9009 
    9010 > set silhouettes true
    9011 
    9012 > set silhouetteDepthJump 0.02
    9013 
    9014 > cartoon style width 2.5
    9015 
    9016 > size atomRadius 2
    9017 
    9018 Changed 1614330 atom radii 
    9019 
    9020 > nucleotides fill
    9021 
    9022 > size ions atomRadius 1.6
    9023 
    9024 Changed 31 atom radii 
    9025 
    9026 > size stickRadius 0.1
    9027 
    9028 Changed 1744812 bond radii 
    9029 
    9030 > style stick ringFill thin
    9031 
    9032 Changed 1614330 atom styles, 122200 residue ring styles 
    9033 
    9034 > show ribbons
    9035 
    9036 > hide H
    9037 
    9038 > hide :HOH
    9039 
    9040 > hide target a
    9041 
    9042 > show nucleic target a
    9043 
    9044 > show drugs target a
    9045 
    9046 > style drugs ball
    9047 
    9048 Changed 106 atom styles 
    9049 
    9050 > nucrib
    9051 
    9052 > graphics selection color black
    9053 
    9054 > volume emmaps style surface step 1 level 4
    9055 
    9056 > surface dust emmaps size 3
    9057 
    9058 > volume surfaceSmoothing true
    9059 
    9060 > cartoon tether trna shape cone opacity 1
    9061 
    9062 > dssp
    9063 
    9064 executed 70S_display.cxc 
    9065 
    9066 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    9067 
    9068 > color name efg-t 100,0,0,50
    9069 
    9070 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    9071 
    9072  
    9073 
    9074 > color name sw1-t 100,92,0,50
    9075 
    9076 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    9077 
    9078  
    9079 
    9080 > color name sw2-t 68,81,0,50
    9081 
    9082 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    9083 
    9084  
    9085 
    9086 > color name pl-t 23,59,0,50
    9087 
    9088 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    9089 
    9090  
    9091 
    9092 > color name d1-t 100,18,4,50
    9093 
    9094 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    9095 
    9096  
    9097 
    9098 > color name d2-t 100,40,4,50
    9099 
    9100 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    9101 
    9102  
    9103 
    9104 > color name d3-t 100,27,36,50
    9105 
    9106 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    9107 
    9108  
    9109 
    9110 > color name d4-t 80,0,23,50
    9111 
    9112 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    9113 
    9114  
    9115 
    9116 > color name d5-t 100,60,4,50
    9117 
    9118 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    9119 
    9120  
    9121 
    9122 > color name fa-t 100,90,4,50
    9123 
    9124 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    9125 
    9126  
    9127 
    9128 > color name gtp-t 45,53,60,50
    9129 
    9130 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    9131 
    9132  
    9133 
    9134 > color name mg-t 1,39,16,50
    9135 
    9136 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    9137 
    9138  
    9139 
    9140 > color name spc-t 100,0,0,50
    9141 
    9142 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    9143 
    9144  
    9145 
    9146 > color name argb-t 50,0,50,50
    9147 
    9148 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    9149 
    9150  
    9151 
    9152 > color name g-1t 98,42,30,50
    9153 
    9154 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    9155 
    9156  
    9157 
    9158 > color name g-2t 95,35,25,50
    9159 
    9160 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    9161 
    9162  
    9163 
    9164 > color name g-3t 92,28,20,50
    9165 
    9166 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    9167 
    9168  
    9169 
    9170 > color name g-4t 89,21,15,50
    9171 
    9172 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    9173 
    9174  
    9175 
    9176 > color name g-5t 86,14,10,50
    9177 
    9178 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    9179 
    9180  
    9181 
    9182 > color name g-6t 83,7,5,50
    9183 
    9184 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    9185 
    9186  
    9187 
    9188 > color name g-7t 80,0,0,50
    9189 
    9190 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    9191 
    9192  
    9193 
    9194 > color name p-t 40,60,2,50
    9195 
    9196 Color 'p-t' is 50% transparent: rgba(40%, 60%, 2%, 50%) hex: #66990580
    9197 
    9198  
    9199 
    9200 > color name p-c 40,60,2,100
    9201 
    9202 Color 'p-c' is opaque: rgb(40%, 60%, 2%) hex: #669905
    9203 
    9204  
    9205 
    9206 > color name p-1t 4,34,1,50
    9207 
    9208 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    9209 
    9210  
    9211 
    9212 > color name p-2t 12,39,1,50
    9213 
    9214 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    9215 
    9216  
    9217 
    9218 > color name p-3t 20,44,1,50
    9219 
    9220 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    9221 
    9222  
    9223 
    9224 > color name p-4t 28,49,1,50
    9225 
    9226 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    9227 
    9228  
    9229 
    9230 > color name p-5t 36,54,2,50
    9231 
    9232 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    9233 
    9234  
    9235 
    9236 > color name p-6t 44,59,2,50
    9237 
    9238 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    9239 
    9240  
    9241 
    9242 > color name p-7t 52,64,2,50
    9243 
    9244 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    9245 
    9246  
    9247 
    9248 > color name p-8t 60,69,2,50
    9249 
    9250 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    9251 
    9252  
    9253 
    9254 > color name p-9t 68,74,3,50
    9255 
    9256 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    9257 
    9258  
    9259 
    9260 > color name p-10t 76,79,3,50
    9261 
    9262 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    9263 
    9264  
    9265 
    9266 > color name p-11t 84,84,3,50
    9267 
    9268 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    9269 
    9270  
    9271 
    9272 > color name d-t 100,75,4,50
    9273 
    9274 Color 'd-t' is 50% transparent: rgba(100%, 75%, 4%, 50%) hex: #ffbf0a80
    9275 
    9276  
    9277 
    9278 > color name d-c 100,75,4,100
    9279 
    9280 Color 'd-c' is opaque: rgb(100%, 75%, 4%) hex: #ffbf0a
    9281 
    9282  
    9283 
    9284 > color name d-1t 100,100,4,50
    9285 
    9286 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    9287 
    9288  
    9289 
    9290 > color name d-2t 100,93,4,50
    9291 
    9292 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    9293 
    9294  
    9295 
    9296 > color name d-3t 100,86,4,50
    9297 
    9298 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    9299 
    9300  
    9301 
    9302 > color name d-4t 100,79,4,50
    9303 
    9304 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    9305 
    9306  
    9307 
    9308 > color name d-5t 100,72,4,50
    9309 
    9310 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    9311 
    9312  
    9313 
    9314 > color name d-6t 100,65,4,50
    9315 
    9316 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    9317 
    9318  
    9319 
    9320 > color name d-7t 100,58,4,50
    9321 
    9322 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    9323 
    9324  
    9325 
    9326 > color name d-8t 100,51,4,50
    9327 
    9328 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    9329 
    9330  
    9331 
    9332 > color name d-9t 100,44,4,50
    9333 
    9334 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    9335 
    9336  
    9337 
    9338 > color name d-10t 100,37,4,50
    9339 
    9340 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    9341 
    9342  
    9343 
    9344 > color name d-11t 100,30,4,50
    9345 
    9346 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    9347 
    9348  
    9349 
    9350 > color name m-t 95,43,62,50
    9351 
    9352 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    9353 
    9354  
    9355 
    9356 > color name m-c 95,43,62,100
    9357 
    9358 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    9359 
    9360  
    9361 
    9362 > color name m-1t 100,80,90,50
    9363 
    9364 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    9365 
    9366  
    9367 
    9368 > color name m-2t 98,76,87,50
    9369 
    9370 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    9371 
    9372  
    9373 
    9374 > color name m-3t 96,72,84,50
    9375 
    9376 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    9377 
    9378  
    9379 
    9380 > color name m-4t 94,68,81,50
    9381 
    9382 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    9383 
    9384  
    9385 
    9386 > color name m-5t 92,64,78,50
    9387 
    9388 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    9389 
    9390  
    9391 
    9392 > color name m-6t 90,60,75,50
    9393 
    9394 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    9395 
    9396  
    9397 
    9398 > color name m-7t 88,56,72,50
    9399 
    9400 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    9401 
    9402  
    9403 
    9404 > color name m-8t 86,52,69,50
    9405 
    9406 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    9407 
    9408  
    9409 
    9410 > color name m-9t 84,48,66,50
    9411 
    9412 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    9413 
    9414  
    9415 
    9416 > color name m-10t 82,44,63,50
    9417 
    9418 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    9419 
    9420  
    9421 
    9422 > color name m-11t 80,40,60,50
    9423 
    9424 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    9425 
    9426  
    9427 
    9428 > color name head-t 71,51,66,50
    9429 
    9430 Color 'head-t' is 50% transparent: rgba(71%, 51%, 66%, 50%) hex: #b582a880
    9431 
    9432  
    9433 
    9434 > color name head-c 89,89,100,100
    9435 
    9436 Color 'head-c' is opaque: rgb(89%, 89%, 100%) hex: #e3e3ff
    9437 
    9438  
    9439 
    9440 > color name headfa-t 80,79,100,50
    9441 
    9442 Color 'headfa-t' is 50% transparent: rgba(80%, 79%, 100%, 50%) hex: #ccc9ff80
    9443 
    9444  
    9445 
    9446 > color name headblue-t 59,78,94,50
    9447 
    9448 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    9449 
    9450  
    9451 
    9452 > color name headh1-t 41,64,100,50
    9453 
    9454 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    9455 
    9456  
    9457 
    9458 > color name headh2-t 50,70,100,50
    9459 
    9460 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    9461 
    9462  
    9463 
    9464 > color name headgray-t 60,60,60,50
    9465 
    9466 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    9467 
    9468  
    9469 
    9470 > color name darkhead-s 58,34,52,100
    9471 
    9472 Color 'darkhead-s' is opaque: rgb(58%, 34%, 52%) hex: #945785
    9473 
    9474  
    9475 
    9476 > color name bodywhite-t 90,90,90,50
    9477 
    9478 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    9479 #e6e6e680
    9480 
    9481  
    9482 
    9483 > color name rps-t 75,88,93,50
    9484 
    9485 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    9486 
    9487  
    9488 
    9489 > color name ssu-t 57,71,75,50
    9490 
    9491 Color 'ssu-t' is 50% transparent: rgba(57%, 71%, 75%, 50%) hex: #91b5bf80
    9492 
    9493  
    9494 
    9495 > color name h18-t 31,59,68,50
    9496 
    9497 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    9498 
    9499  
    9500 
    9501 > color name h18-c 31,59,68,100
    9502 
    9503 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    9504 
    9505  
    9506 
    9507 > color name h23-t 18,36,100,50
    9508 
    9509 Color 'h23-t' is 50% transparent: rgba(18%, 36%, 100%, 50%) hex: #2e5cff80
    9510 
    9511  
    9512 
    9513 > color name h23-c 18,36,100,100
    9514 
    9515 Color 'h23-c' is opaque: rgb(18%, 36%, 100%) hex: #2e5cff
    9516 
    9517  
    9518 
    9519 > color name h24-t 50,70,90,50
    9520 
    9521 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    9522 
    9523  
    9524 
    9525 > color name h24-c 50,70,90,100
    9526 
    9527 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    9528 
    9529  
    9530 
    9531 > color name h28-t 0,24,57,50
    9532 
    9533 Color 'h28-t' is 50% transparent: rgba(0%, 24%, 57%, 50%) hex: #003d9180
    9534 
    9535  
    9536 
    9537 > color name h28-c 0,24,57,100
    9538 
    9539 Color 'h28-c' is opaque: rgb(0%, 24%, 57%) hex: #003d91
    9540 
    9541  
    9542 
    9543 > color name h29-t 80,69,92,50
    9544 
    9545 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    9546 
    9547  
    9548 
    9549 > color name h29-c 80,69,92,100
    9550 
    9551 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    9552 
    9553  
    9554 
    9555 > color name h30-t 40,40,59,50
    9556 
    9557 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    9558 
    9559  
    9560 
    9561 > color name h30-c 40,40,59,100
    9562 
    9563 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    9564 
    9565  
    9566 
    9567 > color name h31-t 45,18,59,50
    9568 
    9569 Color 'h31-t' is 50% transparent: rgba(45%, 18%, 59%, 50%) hex: #732e9680
    9570 
    9571  
    9572 
    9573 > color name h31-c 45,18,59,100
    9574 
    9575 Color 'h31-c' is opaque: rgb(45%, 18%, 59%) hex: #732e96
    9576 
    9577  
    9578 
    9579 > color name h34-t 59,18,59,50
    9580 
    9581 Color 'h34-t' is 50% transparent: rgba(59%, 18%, 59%, 50%) hex: #962e9680
    9582 
    9583  
    9584 
    9585 > color name h34-c 59,18,59,100
    9586 
    9587 Color 'h34-c' is opaque: rgb(59%, 18%, 59%) hex: #962e96
    9588 
    9589  
    9590 
    9591 > color name h35-t 50,22,45,50
    9592 
    9593 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    9594 
    9595  
    9596 
    9597 > color name h35-c 50,22,45,100
    9598 
    9599 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    9600 
    9601  
    9602 
    9603 > color name h44-t 27,50,80,50
    9604 
    9605 Color 'h44-t' is 50% transparent: rgba(27%, 50%, 80%, 50%) hex: #4580cc80
    9606 
    9607  
    9608 
    9609 > color name h44-c 27,50,80,100
    9610 
    9611 Color 'h44-c' is opaque: rgb(27%, 50%, 80%) hex: #4580cc
    9612 
    9613  
    9614 
    9615 > color name aploop-t 27,0,50,50
    9616 
    9617 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    9618 
    9619  
    9620 
    9621 > color name term16-t 40,64,64,50
    9622 
    9623 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    9624 
    9625  
    9626 
    9627 > color name uS3-t 64,41,82,50
    9628 
    9629 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    9630 
    9631  
    9632 
    9633 > color name uS5-t 0,50,45,50
    9634 
    9635 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    9636 
    9637  
    9638 
    9639 > color name gray-t 70,70,70,50
    9640 
    9641 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    9642 
    9643  
    9644 
    9645 > color name hx68-t 50,50,50,50
    9646 
    9647 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    9648 
    9649  
    9650 
    9651 > color name hx68-c 50,50,50,100
    9652 
    9653 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    9654 
    9655  
    9656 
    9657 > color name hx69-t 40,40,40,50
    9658 
    9659 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    9660 
    9661  
    9662 
    9663 > color name hx69-c 40,40,40,100
    9664 
    9665 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    9666 
    9667  
    9668 
    9669 > color name srl-t 50,50,50,50
    9670 
    9671 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    9672 
    9673  
    9674 
    9675 > color name srl-t 50,50,50,100
    9676 
    9677 Color 'srl-t' is opaque: gray(50%) hex: #808080
    9678 
    9679  
    9680 
    9681 > color name lightgrayt 83,83,83,50
    9682 
    9683 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    9684 
    9685  
    9686 
    9687 > color name silvert 75,75,75,50
    9688 
    9689 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    9690 
    9691  
    9692 
    9693 > color name grayt 50,50,50,50
    9694 
    9695 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    9696 
    9697  
    9698 
    9699 > color name lightcyant 88,100,100,50
    9700 
    9701 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    9702 #e0ffff80
    9703 
    9704  
    9705 
    9706 > color name yellowt 100,90,0,50
    9707 
    9708 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    9709 
    9710  
    9711 
    9712 > color name deeppinkt 100,8,58,50
    9713 
    9714 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    9715 
    9716  
    9717 
    9718 > color name oranget 100,65,0,50
    9719 
    9720 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    9721 
    9722  
    9723 
    9724 > color name yellowgreent 60,80,20,50
    9725 
    9726 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    9727 #99cc3380
    9728 
    9729  
    9730 
    9731 > color name darkmagentat 54,0,54,50
    9732 
    9733 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    9734 #8a008a80
    9735 
    9736  
    9737 
    9738 > color name orchidt 86,44,84,50
    9739 
    9740 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    9741 
    9742  
    9743 
    9744 > color name paleturquoiset 69,93,93,50
    9745 
    9746 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    9747 #b0eded80
    9748 
    9749  
    9750 
    9751 > color name pinkt 100,75,80,50
    9752 
    9753 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    9754 
    9755  
    9756 
    9757 > color name darkgreent 0,39,0,50
    9758 
    9759 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    9760 
    9761  
    9762 
    9763 > color name limegreent 20,80,20,50
    9764 
    9765 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    9766 
    9767  
    9768 
    9769 > color name turquoiset 25,88,82,50
    9770 
    9771 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    9772 
    9773  
    9774 
    9775 > color name tealt 0,50,50,50
    9776 
    9777 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    9778 
    9779  
    9780 
    9781 > color name darkoranget 100,50,0,50
    9782 
    9783 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    9784 #ff800080
    9785 
    9786  
    9787 
    9788 > color name lightyellowt 100,100,50,50
    9789 
    9790 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    9791 #ffff8080
    9792 
    9793  
    9794 
    9795 > color name goldt 100,75,0,50
    9796 
    9797 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    9798 
    9799  
    9800 
    9801 > color name plumt 87,63,87,50
    9802 
    9803 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    9804 
    9805  
    9806 
    9807 > color name ssubluet 68,86,90,50
    9808 
    9809 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    9810 
    9811  
    9812 
    9813 > color name p-prect 10,41,0,50
    9814 
    9815 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    9816 
    9817  
    9818 
    9819 > color name p-h2t 23,59,0,50
    9820 
    9821 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    9822 
    9823  
    9824 
    9825 > color name p-h1t 40,73,0,50
    9826 
    9827 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    9828 
    9829  
    9830 
    9831 > color name p-h1c 40,73,0,100
    9832 
    9833 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    9834 
    9835  
    9836 
    9837 > color name p-spct 68,81,0,50
    9838 
    9839 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    9840 
    9841  
    9842 
    9843 > color name p-spcc 68,81,0,100
    9844 
    9845 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    9846 
    9847  
    9848 
    9849 > color name p-fat 82,92,0,50
    9850 
    9851 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    9852 
    9853  
    9854 
    9855 > color name p-postt 100,92,0,50
    9856 
    9857 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    9858 
    9859  
    9860 
    9861 > color name d-t 100,80,4,50
    9862 
    9863 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    9864 
    9865  
    9866 
    9867 > color name d-prect 95,100,50,50
    9868 
    9869 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    9870 
    9871  
    9872 
    9873 > color name d-h2t 100,90,4,50
    9874 
    9875 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    9876 
    9877  
    9878 
    9879 > color name d-h1t 100,80,4,50
    9880 
    9881 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    9882 
    9883  
    9884 
    9885 > color name d-spct 100,70,4,50
    9886 
    9887 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    9888 
    9889  
    9890 
    9891 > color name d-fat 100,55,4,50
    9892 
    9893 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    9894 
    9895  
    9896 
    9897 > color name d-fac 100,55,4,100
    9898 
    9899 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    9900 
    9901  
    9902 
    9903 > color name d-postt 100,40,4,50
    9904 
    9905 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    9906 
    9907  
    9908 
    9909 > color name m-t 95,43,62,50
    9910 
    9911 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    9912 
    9913  
    9914 
    9915 > color name m-prect 100,85,95,50
    9916 
    9917 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    9918 
    9919  
    9920 
    9921 > color name m-h2t 100,85,95,50
    9922 
    9923 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    9924 
    9925  
    9926 
    9927 > color name m-h1t 100,75,95,50
    9928 
    9929 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    9930 
    9931  
    9932 
    9933 > color name m-spct 89,63,75,50
    9934 
    9935 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    9936 
    9937  
    9938 
    9939 > color name m-fat 95,51,75,50
    9940 
    9941 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    9942 
    9943  
    9944 
    9945 > color name m-fac 95,51,75,100
    9946 
    9947 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    9948 
    9949  
    9950 
    9951 > color name m-postt 95,43,62,50
    9952 
    9953 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    9954 
    9955  
    9956 executed 70S_colors.cxc 
    9957 
    9958 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    9959 
    9960 > color 100,100,100,50
    9961 
    9962 > color lsu silvert
    9963 
    9964 > color /3 lightgrayt
    9965 
    9966 > color /5 lightgrayt
    9967 
    9968 > color ssu ssu-t
    9969 
    9970 > color head head-t
    9971 
    9972 > color efg efg-t
    9973 
    9974 > color dt d-t
    9975 
    9976 > color pt p-t
    9977 
    9978 > color pep p-t
    9979 
    9980 > color mrna m-t
    9981 
    9982 executed 70S_colorstandard.cxc 
    9983 
    9984 > windowsize 1000 1000
    9985 
    9986 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    9987 
    9988 > color h18 h18-t
    9989 
    9990 > color h23 h23-t
    9991 
    9992 > color h24 h24-t
    9993 
    9994 > color h28 h28-t
    9995 
    9996 > color h29 h29-t
    9997 
    9998 > color h30 h30-t
    9999 
    10000 > color h31 h31-t
    10001 
    10002 > color h34 h34-t
    10003 
    10004 > color h35 h35-t
    10005 
    10006 > color h36 h36-t
    10007 
    10008 > color h44 h44-t
    10009 
    10010 > color H69 hx69-t
    10011 
    10012 executed 70S_color_helices.cxc 
    10013 
    10014 > color h30|h36|h35 head-t
    10015 
    10016 > view dc3
    10017 
    10018 > surface cap true
    10019 
    10020 > color zone #12.1 near #12.3,5 distance 5
    10021 
    10022 > color zone #13.1 near #13.3,5 distance 5
    10023 
    10024 > color zone #14.1 near #14.3,5 distance 5
    10025 
    10026 > color zone #30.1 near #30.3,5 distance 5
    10027 
    10028 > color zone #31.1 near #31.3,5 distance 5
    10029 
    10030 > color zone #32.1 near #32.3,5 distance 5
    10031 
    10032 > color zone #33.1 near #33.3,5 distance 5
    10033 
    10034 > color zone #34.1 near #34.3,5 distance 5
    10035 
    10036 > color zone #30.9 near #30.3,5 distance 5
    10037 
    10038 > color zone #31.9 near #31.3,5 distance 5
    10039 
    10040 > color zone #32.9 near #32.3,5 distance 5
    10041 
    10042 > color zone #33.9 near #33.3,5 distance 5
    10043 
    10044 > color zone #34.9 near #34.3,5 distance 5
    10045 
    10046 > color h30|h36|h35 head-c
    10047 
    10048 > color h28 h28-c
    10049 
    10050 > color h29 h29-c
    10051 
    10052 > color h34 h34-c
    10053 
    10054 > color h23 h23-c
    10055 
    10056 > color h24 h24-c
    10057 
    10058 > color h31 h31-c
    10059 
    10060 > hide #!100
    10061 
    10062 > hide #101 models
    10063 
    10064 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    10065 
    10066 > transparency #*.3 0 target abc
    10067 
    10068 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    10069 
    10070 > color h18 h18-c
    10071 
    10072 > color h23 h23-c
    10073 
    10074 > color h24 h24-c
    10075 
    10076 > color h28 h28-c
    10077 
    10078 > color h29 h29-c
    10079 
    10080 > color h30 h30-c
    10081 
    10082 > color h31 h31-c
    10083 
    10084 > color h34 h34-c
    10085 
    10086 > color h35 h35-c
    10087 
    10088 > color h44 h44-c
    10089 
    10090 > color H69 hx69-c
    10091 
    10092 executed 70S_color_helices-s.cxc 
    10093 
    10094 > color /v d-c
    10095 
    10096 > color /y p-c
    10097 
    10098 > color /w m-c
    10099 
    10100 executed gtpys_dc.cxc 
    10101 
    10102 > surface cap true
    10103 
    10104 > lighting gentle
    10105 
    10106 > lighting intensity .2
    10107 
    10108 > size stickRadius 0.17
    10109 
    10110 Changed 1744812 bond radii 
    10111 
    10112 > nucribthin
    10113 
    10114 > style ringFill thin
    10115 
    10116 Changed 122200 residue ring styles 
    10117 
    10118 > graphics silhouettes true color black
    10119 
    10120 > ~select
    10121 
    10122 Nothing selected 
    10123 
    10124 > ~select
    10125 
    10126 Nothing selected 
    10127 
    10128 > ~ribbon
    10129 
    10130 > ~display
    10131 
    10132 > ribbon
    10133 
    10134 > ~ribbon mrna
    10135 
    10136 > display mrna
    10137 
    10138 > display antiplus
    10139 
    10140 > display /x:505-514,584
    10141 
    10142 > display /6:1492,1493,530,532,1054,1400,1397
    10143 
    10144 > display /3:1913
    10145 
    10146 > display #*.3/L:44
    10147 
    10148 > hide models
    10149 
    10150 > show #31.3,5 models
    10151 
    10152 > view dc1
    10153 
    10154 > windowsize 1000 1000
    10155 
    10156 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    10157 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10158 
    10159 > view dc2
    10160 
    10161 > windowsize 1000 1000
    10162 
    10163 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    10164 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10165 
    10166 > hide models
    10167 
    10168 > show #32.3,5 models
    10169 
    10170 > windowsize 1000 1000
    10171 
    10172 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    10173 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10174 
    10175 > view dc2
    10176 
    10177 > windowsize 1000 1000
    10178 
    10179 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    10180 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10181 
    10182 > hide models
    10183 
    10184 > show #12.3,5 models
    10185 
    10186 > view dc1
    10187 
    10188 > windowsize 1000 1000
    10189 
    10190 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    10191 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10192 
    10193 > view dc2
    10194 
    10195 > windowsize 1000 1000
    10196 
    10197 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    10198 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10199 
    10200 > hide models
    10201 
    10202 > show #33.3,5 models
    10203 
    10204 > view dc1
    10205 
    10206 > windowsize 1000 1000
    10207 
    10208 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    10209 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10210 
    10211 > view dc2
    10212 
    10213 > windowsize 1000 1000
    10214 
    10215 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    10216 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10217 
    10218 > hide models
    10219 
    10220 > show #34.3,5 models
    10221 
    10222 > view dc1
    10223 
    10224 > windowsize 1000 1000
    10225 
    10226 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    10227 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10228 
    10229 > view dc2
    10230 
    10231 > windowsize 1000 1000
    10232 
    10233 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    10234 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10235 
    10236 > hide models
    10237 
    10238 > show #13.3,5 models
    10239 
    10240 > view dc1
    10241 
    10242 > windowsize 1000 1000
    10243 
    10244 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    10245 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10246 
    10247 > view dc2
    10248 
    10249 > windowsize 1000 1000
    10250 
    10251 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    10252 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10253 
    10254 > hide models
    10255 
    10256 > show #14.3,5 models
    10257 
    10258 > ~display #14.3/w:38,49
    10259 
    10260 > view dc1
    10261 
    10262 > windowsize 1000 1000
    10263 
    10264 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    10265 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10266 
    10267 > view dc2
    10268 
    10269 > windowsize 1000 1000
    10270 
    10271 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    10272 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10273 
    10274 > graphics silhouettes true color 25,25,25,15
    10275 
    10276 > style ringFill thick
    10277 
    10278 Changed 122200 residue ring styles 
    10279 
    10280 > ~cartoon /6/3
    10281 
    10282 > display /6/3
    10283 
    10284 > ~cartoon trna
    10285 
    10286 > display trna
    10287 
    10288 > volume emmaps style surface step 1 level 3
    10289 
    10290 > surface dust emmaps size 2
    10291 
    10292 > volume emmaps surfaceSmoothing true
    10293 
    10294 > view dc3
    10295 
    10296 > hide models
    10297 
    10298 > show #30 models
    10299 
    10300 > select #30.3
    10301 
    10302 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    10303 
    10304 > hide #30.9 models
    10305 
    10306 > windowsize 1000 1000
    10307 
    10308 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    10309 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10310 
    10311 > hide models
    10312 
    10313 > show #31 models
    10314 
    10315 > select #31.3
    10316 
    10317 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    10318 
    10319 > hide #31.9 models
    10320 
    10321 > windowsize 1000 1000
    10322 
    10323 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    10324 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10325 
    10326 > hide models
    10327 
    10328 > show #32 models
    10329 
    10330 > select #32.3
    10331 
    10332 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    10333 
    10334 > hide #32.9 models
    10335 
    10336 > windowsize 1000 1000
    10337 
    10338 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    10339 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10340 
    10341 > hide models
    10342 
    10343 > show #12 models
    10344 
    10345 > select #12.3
    10346 
    10347 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    10348 
    10349 > windowsize 1000 1000
    10350 
    10351 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    10352 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10353 
    10354 > hide models
    10355 
    10356 > show #33 models
    10357 
    10358 > select #33.3
    10359 
    10360 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    10361 
    10362 > hide #33.9 models
    10363 
    10364 > windowsize 1000 1000
    10365 
    10366 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    10367 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10368 
    10369 > hide models
    10370 
    10371 > show #34 models
    10372 
    10373 > select #34.3
    10374 
    10375 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    10376 
    10377 > hide #34.9 models
    10378 
    10379 > windowsize 1000 1000
    10380 
    10381 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    10382 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10383 
    10384 > hide models
    10385 
    10386 > show #13 models
    10387 
    10388 > select #13.3
    10389 
    10390 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    10391 
    10392 > windowsize 1000 1000
    10393 
    10394 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    10395 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10396 
    10397 > hide models
    10398 
    10399 > show #14 models
    10400 
    10401 > ~display #14.3/w:38,49
    10402 
    10403 > select #14.3
    10404 
    10405 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    10406 
    10407 > windowsize 1000 1000
    10408 
    10409 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    10410 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10411 
    10412 > volume emmaps style surface step 1 level 6
    10413 
    10414 > surface dust emmaps size 2
    10415 
    10416 > volume emmaps surfaceSmoothing true
    10417 
    10418 > hide models
    10419 
    10420 > show #30.3,5,9 models
    10421 
    10422 > select #30.3
    10423 
    10424 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    10425 
    10426 > windowsize 1000 1000
    10427 
    10428 > save
    10429 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig6_ysH1a-FR.tif
    10430 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10431 
    10432 > hide models
    10433 
    10434 > show #31.3,5,9 models
    10435 
    10436 > select #31.3
    10437 
    10438 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    10439 
    10440 > windowsize 1000 1000
    10441 
    10442 > save
    10443 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig6_ysH1b-FR.tif
    10444 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10445 
    10446 > hide models
    10447 
    10448 > show #32.3,5,9 models
    10449 
    10450 > select #32.3
    10451 
    10452 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    10453 
    10454 > windowsize 1000 1000
    10455 
    10456 > save
    10457 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig6_ysH1c-FR.tif
    10458 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10459 
    10460 > hide models
    10461 
    10462 > show #33.3,5,9 models
    10463 
    10464 > select #33.3
    10465 
    10466 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    10467 
    10468 > windowsize 1000 1000
    10469 
    10470 > save
    10471 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig6_ysI1a-FR.tif
    10472 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    10473 
    10474 > hide models
    10475 
    10476 > show #34.3,5,9 models
    10477 
    10478 > select #34.3
    10479 
    10480 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    10481 
    10482 > windowsize 1000 1000
    10483 
    10484 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig6_I1bys-
    10485 > FR.tif format tiff width 1000 height 1000 supersample 20
    10486 > transparentBackground true
    10487 
    10488 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    10489 
    10490 ——— End of log from Mon Jun 12 15:39:44 2023 ———
    10491 
    10492 opened ChimeraX session 
    10493 
    10494 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    10495 
    10496 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    10497 
    10498 > name atomods #*.3|#*.5
    10499 
    10500 > name emmaps #*.1|#*.7|#*.8|#*.9
    10501 
    10502 > name lsu #*.5
    10503 
    10504 > name lsumap #*.8
    10505 
    10506 > name ssu #*.3
    10507 
    10508 > name ssumap #*.7
    10509 
    10510 > name ligmap #*.9
    10511 
    10512 > name rna /y,v,w,3,6,5
    10513 
    10514 > name r23s /3
    10515 
    10516 > name r16s /6
    10517 
    10518 > name r5s /5
    10519 
    10520 > name pt /y
    10521 
    10522 > name dt /v
    10523 
    10524 > name efg /x
    10525 
    10526 > name pep /p
    10527 
    10528 > name mrna /w
    10529 
    10530 > name GSP :GSP
    10531 
    10532 > name GDP :GDP
    10533 
    10534 > name GTP :GTP
    10535 
    10536 > name ntide :GTP|:GDP|:GSP
    10537 
    10538 > name spc :SCM
    10539 
    10540 > name fua :FUA
    10541 
    10542 > name par :PAR
    10543 
    10544 > name argb :LIG
    10545 
    10546 > name drugs argb|par|fua|spc
    10547 
    10548 > name D1 /x:start-293
    10549 
    10550 > name D2 /x:294-410
    10551 
    10552 > name D3 /x:411-489
    10553 
    10554 > name D4 /x:490-612
    10555 
    10556 > name D5 /x:613-end
    10557 
    10558 > name sw1 /x:38-65
    10559 
    10560 > name sw2 /x:89-108
    10561 
    10562 > name pl /x:18-25
    10563 
    10564 > name nkxd /x:142-146
    10565 
    10566 > name mg /x:MG
    10567 
    10568 > name trna /y,v
    10569 
    10570 > name anticodon /y,v:34-36
    10571 
    10572 > name antiplus /y,v:32-38
    10573 
    10574 > name cca /y,v:74-76
    10575 
    10576 > name astem /y,v:1-7,66-73
    10577 
    10578 > name darm /y,v:8-25
    10579 
    10580 > name aarm /y,v:26-43
    10581 
    10582 > name varm /y,v:44-48
    10583 
    10584 > name tarm /y,v:49-65
    10585 
    10586 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    10587 
    10588 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    10589 
    10590 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    10591 
    10592 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    10593 
    10594 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    10595 
    10596 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    10597 
    10598 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    10599 
    10600 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    10601 
    10602 > name h8 /6:144-178
    10603 
    10604 > name h14 /6:339-350
    10605 
    10606 > name h18 /6:511-540
    10607 
    10608 > name h23 /6:674-716
    10609 
    10610 > name h24 /6:769-810
    10611 
    10612 > name h27 /6:894-905
    10613 
    10614 > name h28 /6:921-937,1379-1400
    10615 
    10616 > name h29 /6:938-943,1337-1346
    10617 
    10618 > name h30 /6:945-955,1225-1235
    10619 
    10620 > name h31 /6:956-975
    10621 
    10622 > name h32 /6:984-990,1215-1221
    10623 
    10624 > name h34 /6:1045-1065,1188-1211
    10625 
    10626 > name h35 /6:1066-1073,1102-1110
    10627 
    10628 > name h36 /6:1074-1083
    10629 
    10630 > name h44 /6:1401-1502
    10631 
    10632 > name h45 /6:1506-1529
    10633 
    10634 > name aploop /6:956-959
    10635 
    10636 > name term16S /6:1503-end
    10637 
    10638 > name aphelix /6:1228-1230
    10639 
    10640 > name us3 #*.3/C
    10641 
    10642 > name us5 #*.3/E
    10643 
    10644 > name us7 #*.3/G
    10645 
    10646 > name us9 #*.3/I
    10647 
    10648 > name us11 #*.3/K
    10649 
    10650 > name us12 #*.3/L
    10651 
    10652 > name us13 #*.3/M
    10653 
    10654 > name us14 #*.3/N
    10655 
    10656 > name us15 #*.3/O
    10657 
    10658 > name us9-130 #*.3/I:130
    10659 
    10660 > name l1stalk /3:2097-2191
    10661 
    10662 > name srl /3:2652-2668
    10663 
    10664 > name H68 /3:1832-1906
    10665 
    10666 > name H69 /3:1907-1924
    10667 
    10668 > name H95 /3:2647-2673
    10669 
    10670 > name ul2 #*.5/B
    10671 
    10672 > name ul5 #*.5/E
    10673 
    10674 > name ul14 #*.5/N
    10675 
    10676 > name ul19 #*.5/S
    10677 
    10678 > name ul31 #*.5/e
    10679 
    10680 executed 70S_assign.cxc 
    10681 
    10682 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    10683 
    10684 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    10685 
    10686 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    10687 
    10688 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    10689 
    10690 > alias licorice car style protein modeh default arrows f xsect oval width 1
    10691 > thick 1;
    10692 
    10693 > dssp
    10694 
    10695 > windowsize 1000 1000
    10696 
    10697 > set bgColor white
    10698 
    10699 > lighting full
    10700 
    10701 > set silhouettes true
    10702 
    10703 > set silhouetteWidth 1.7
    10704 
    10705 > set silhouettes true
    10706 
    10707 > set silhouetteDepthJump 0.02
    10708 
    10709 > cartoon style width 2.5
    10710 
    10711 > size atomRadius 2
    10712 
    10713 Changed 1614330 atom radii 
    10714 
    10715 > nucleotides fill
    10716 
    10717 > size ions atomRadius 1.6
    10718 
    10719 Changed 31 atom radii 
    10720 
    10721 > size stickRadius 0.1
    10722 
    10723 Changed 1744812 bond radii 
    10724 
    10725 > style stick ringFill thin
    10726 
    10727 Changed 1614330 atom styles, 122200 residue ring styles 
    10728 
    10729 > show ribbons
    10730 
    10731 > hide H
    10732 
    10733 > hide :HOH
    10734 
    10735 > hide target a
    10736 
    10737 > show nucleic target a
    10738 
    10739 > show drugs target a
    10740 
    10741 > style drugs ball
    10742 
    10743 Changed 106 atom styles 
    10744 
    10745 > nucrib
    10746 
    10747 > graphics selection color black
    10748 
    10749 > volume emmaps style surface step 1 level 4
    10750 
    10751 > surface dust emmaps size 3
    10752 
    10753 > volume surfaceSmoothing true
    10754 
    10755 > cartoon tether trna shape cone opacity 1
    10756 
    10757 > dssp
    10758 
    10759 executed 70S_display.cxc 
    10760 
    10761 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    10762 
    10763 > color name efg-t 100,0,0,50
    10764 
    10765 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    10766 
    10767  
    10768 
    10769 > color name sw1-t 100,92,0,50
    10770 
    10771 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    10772 
    10773  
    10774 
    10775 > color name sw2-t 68,81,0,50
    10776 
    10777 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    10778 
    10779  
    10780 
    10781 > color name pl-t 23,59,0,50
    10782 
    10783 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    10784 
    10785  
    10786 
    10787 > color name d1-t 100,18,4,50
    10788 
    10789 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    10790 
    10791  
    10792 
    10793 > color name d2-t 100,40,4,50
    10794 
    10795 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    10796 
    10797  
    10798 
    10799 > color name d3-t 100,27,36,50
    10800 
    10801 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    10802 
    10803  
    10804 
    10805 > color name d4-t 80,0,23,50
    10806 
    10807 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    10808 
    10809  
    10810 
    10811 > color name d5-t 100,60,4,50
    10812 
    10813 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    10814 
    10815  
    10816 
    10817 > color name fa-t 100,90,4,50
    10818 
    10819 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    10820 
    10821  
    10822 
    10823 > color name gtp-t 45,53,60,50
    10824 
    10825 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    10826 
    10827  
    10828 
    10829 > color name mg-t 1,39,16,50
    10830 
    10831 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    10832 
    10833  
    10834 
    10835 > color name spc-t 100,0,0,50
    10836 
    10837 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    10838 
    10839  
    10840 
    10841 > color name argb-t 50,0,50,50
    10842 
    10843 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    10844 
    10845  
    10846 
    10847 > color name g-1t 98,42,30,50
    10848 
    10849 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    10850 
    10851  
    10852 
    10853 > color name g-2t 95,35,25,50
    10854 
    10855 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    10856 
    10857  
    10858 
    10859 > color name g-3t 92,28,20,50
    10860 
    10861 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    10862 
    10863  
    10864 
    10865 > color name g-4t 89,21,15,50
    10866 
    10867 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    10868 
    10869  
    10870 
    10871 > color name g-5t 86,14,10,50
    10872 
    10873 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    10874 
    10875  
    10876 
    10877 > color name g-6t 83,7,5,50
    10878 
    10879 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    10880 
    10881  
    10882 
    10883 > color name g-7t 80,0,0,50
    10884 
    10885 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    10886 
    10887  
    10888 
    10889 > color name p-t 40,60,2,50
    10890 
    10891 Color 'p-t' is 50% transparent: rgba(40%, 60%, 2%, 50%) hex: #66990580
    10892 
    10893  
    10894 
    10895 > color name p-c 40,60,2,100
    10896 
    10897 Color 'p-c' is opaque: rgb(40%, 60%, 2%) hex: #669905
    10898 
    10899  
    10900 
    10901 > color name p-1t 4,34,1,50
    10902 
    10903 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    10904 
    10905  
    10906 
    10907 > color name p-2t 12,39,1,50
    10908 
    10909 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    10910 
    10911  
    10912 
    10913 > color name p-3t 20,44,1,50
    10914 
    10915 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    10916 
    10917  
    10918 
    10919 > color name p-4t 28,49,1,50
    10920 
    10921 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    10922 
    10923  
    10924 
    10925 > color name p-5t 36,54,2,50
    10926 
    10927 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    10928 
    10929  
    10930 
    10931 > color name p-6t 44,59,2,50
    10932 
    10933 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    10934 
    10935  
    10936 
    10937 > color name p-7t 52,64,2,50
    10938 
    10939 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    10940 
    10941  
    10942 
    10943 > color name p-8t 60,69,2,50
    10944 
    10945 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    10946 
    10947  
    10948 
    10949 > color name p-9t 68,74,3,50
    10950 
    10951 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    10952 
    10953  
    10954 
    10955 > color name p-10t 76,79,3,50
    10956 
    10957 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    10958 
    10959  
    10960 
    10961 > color name p-11t 84,84,3,50
    10962 
    10963 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    10964 
    10965  
    10966 
    10967 > color name d-t 100,75,4,50
    10968 
    10969 Color 'd-t' is 50% transparent: rgba(100%, 75%, 4%, 50%) hex: #ffbf0a80
    10970 
    10971  
    10972 
    10973 > color name d-c 100,75,4,100
    10974 
    10975 Color 'd-c' is opaque: rgb(100%, 75%, 4%) hex: #ffbf0a
    10976 
    10977  
    10978 
    10979 > color name d-1t 100,100,4,50
    10980 
    10981 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    10982 
    10983  
    10984 
    10985 > color name d-2t 100,93,4,50
    10986 
    10987 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    10988 
    10989  
    10990 
    10991 > color name d-3t 100,86,4,50
    10992 
    10993 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    10994 
    10995  
    10996 
    10997 > color name d-4t 100,79,4,50
    10998 
    10999 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    11000 
    11001  
    11002 
    11003 > color name d-5t 100,72,4,50
    11004 
    11005 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    11006 
    11007  
    11008 
    11009 > color name d-6t 100,65,4,50
    11010 
    11011 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    11012 
    11013  
    11014 
    11015 > color name d-7t 100,58,4,50
    11016 
    11017 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    11018 
    11019  
    11020 
    11021 > color name d-8t 100,51,4,50
    11022 
    11023 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    11024 
    11025  
    11026 
    11027 > color name d-9t 100,44,4,50
    11028 
    11029 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    11030 
    11031  
    11032 
    11033 > color name d-10t 100,37,4,50
    11034 
    11035 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    11036 
    11037  
    11038 
    11039 > color name d-11t 100,30,4,50
    11040 
    11041 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    11042 
    11043  
    11044 
    11045 > color name m-t 95,43,62,50
    11046 
    11047 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    11048 
    11049  
    11050 
    11051 > color name m-c 95,43,62,100
    11052 
    11053 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    11054 
    11055  
    11056 
    11057 > color name m-1t 100,80,90,50
    11058 
    11059 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    11060 
    11061  
    11062 
    11063 > color name m-2t 98,76,87,50
    11064 
    11065 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    11066 
    11067  
    11068 
    11069 > color name m-3t 96,72,84,50
    11070 
    11071 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    11072 
    11073  
    11074 
    11075 > color name m-4t 94,68,81,50
    11076 
    11077 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    11078 
    11079  
    11080 
    11081 > color name m-5t 92,64,78,50
    11082 
    11083 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    11084 
    11085  
    11086 
    11087 > color name m-6t 90,60,75,50
    11088 
    11089 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    11090 
    11091  
    11092 
    11093 > color name m-7t 88,56,72,50
    11094 
    11095 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    11096 
    11097  
    11098 
    11099 > color name m-8t 86,52,69,50
    11100 
    11101 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    11102 
    11103  
    11104 
    11105 > color name m-9t 84,48,66,50
    11106 
    11107 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    11108 
    11109  
    11110 
    11111 > color name m-10t 82,44,63,50
    11112 
    11113 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    11114 
    11115  
    11116 
    11117 > color name m-11t 80,40,60,50
    11118 
    11119 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    11120 
    11121  
    11122 
    11123 > color name head-t 71,51,66,50
    11124 
    11125 Color 'head-t' is 50% transparent: rgba(71%, 51%, 66%, 50%) hex: #b582a880
    11126 
    11127  
    11128 
    11129 > color name head-c 89,89,100,100
    11130 
    11131 Color 'head-c' is opaque: rgb(89%, 89%, 100%) hex: #e3e3ff
    11132 
    11133  
    11134 
    11135 > color name headfa-t 80,79,100,50
    11136 
    11137 Color 'headfa-t' is 50% transparent: rgba(80%, 79%, 100%, 50%) hex: #ccc9ff80
    11138 
    11139  
    11140 
    11141 > color name headblue-t 59,78,94,50
    11142 
    11143 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    11144 
    11145  
    11146 
    11147 > color name headh1-t 41,64,100,50
    11148 
    11149 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    11150 
    11151  
    11152 
    11153 > color name headh2-t 50,70,100,50
    11154 
    11155 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    11156 
    11157  
    11158 
    11159 > color name headgray-t 60,60,60,50
    11160 
    11161 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    11162 
    11163  
    11164 
    11165 > color name darkhead-s 58,34,52,100
    11166 
    11167 Color 'darkhead-s' is opaque: rgb(58%, 34%, 52%) hex: #945785
    11168 
    11169  
    11170 
    11171 > color name bodywhite-t 90,90,90,50
    11172 
    11173 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    11174 #e6e6e680
    11175 
    11176  
    11177 
    11178 > color name rps-t 75,88,93,50
    11179 
    11180 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    11181 
    11182  
    11183 
    11184 > color name ssu-t 57,71,75,50
    11185 
    11186 Color 'ssu-t' is 50% transparent: rgba(57%, 71%, 75%, 50%) hex: #91b5bf80
    11187 
    11188  
    11189 
    11190 > color name h18-t 31,59,68,50
    11191 
    11192 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    11193 
    11194  
    11195 
    11196 > color name h18-c 31,59,68,100
    11197 
    11198 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    11199 
    11200  
    11201 
    11202 > color name h23-t 18,36,100,50
    11203 
    11204 Color 'h23-t' is 50% transparent: rgba(18%, 36%, 100%, 50%) hex: #2e5cff80
    11205 
    11206  
    11207 
    11208 > color name h23-c 18,36,100,100
    11209 
    11210 Color 'h23-c' is opaque: rgb(18%, 36%, 100%) hex: #2e5cff
    11211 
    11212  
    11213 
    11214 > color name h24-t 50,70,90,50
    11215 
    11216 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    11217 
    11218  
    11219 
    11220 > color name h24-c 50,70,90,100
    11221 
    11222 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    11223 
    11224  
    11225 
    11226 > color name h28-t 0,24,57,50
    11227 
    11228 Color 'h28-t' is 50% transparent: rgba(0%, 24%, 57%, 50%) hex: #003d9180
    11229 
    11230  
    11231 
    11232 > color name h28-c 0,24,57,100
    11233 
    11234 Color 'h28-c' is opaque: rgb(0%, 24%, 57%) hex: #003d91
    11235 
    11236  
    11237 
    11238 > color name h29-t 80,69,92,50
    11239 
    11240 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    11241 
    11242  
    11243 
    11244 > color name h29-c 80,69,92,100
    11245 
    11246 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    11247 
    11248  
    11249 
    11250 > color name h30-t 40,40,59,50
    11251 
    11252 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    11253 
    11254  
    11255 
    11256 > color name h30-c 40,40,59,100
    11257 
    11258 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    11259 
    11260  
    11261 
    11262 > color name h31-t 45,18,59,50
    11263 
    11264 Color 'h31-t' is 50% transparent: rgba(45%, 18%, 59%, 50%) hex: #732e9680
    11265 
    11266  
    11267 
    11268 > color name h31-c 45,18,59,100
    11269 
    11270 Color 'h31-c' is opaque: rgb(45%, 18%, 59%) hex: #732e96
    11271 
    11272  
    11273 
    11274 > color name h34-t 59,18,59,50
    11275 
    11276 Color 'h34-t' is 50% transparent: rgba(59%, 18%, 59%, 50%) hex: #962e9680
    11277 
    11278  
    11279 
    11280 > color name h34-c 59,18,59,100
    11281 
    11282 Color 'h34-c' is opaque: rgb(59%, 18%, 59%) hex: #962e96
    11283 
    11284  
    11285 
    11286 > color name h35-t 50,22,45,50
    11287 
    11288 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    11289 
    11290  
    11291 
    11292 > color name h35-c 50,22,45,100
    11293 
    11294 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    11295 
    11296  
    11297 
    11298 > color name h44-t 27,50,80,50
    11299 
    11300 Color 'h44-t' is 50% transparent: rgba(27%, 50%, 80%, 50%) hex: #4580cc80
    11301 
    11302  
    11303 
    11304 > color name h44-c 27,50,80,100
    11305 
    11306 Color 'h44-c' is opaque: rgb(27%, 50%, 80%) hex: #4580cc
    11307 
    11308  
    11309 
    11310 > color name aploop-t 27,0,50,50
    11311 
    11312 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    11313 
    11314  
    11315 
    11316 > color name term16-t 40,64,64,50
    11317 
    11318 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    11319 
    11320  
    11321 
    11322 > color name uS3-t 64,41,82,50
    11323 
    11324 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    11325 
    11326  
    11327 
    11328 > color name uS5-t 0,50,45,50
    11329 
    11330 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    11331 
    11332  
    11333 
    11334 > color name gray-t 70,70,70,50
    11335 
    11336 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    11337 
    11338  
    11339 
    11340 > color name hx68-t 50,50,50,50
    11341 
    11342 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    11343 
    11344  
    11345 
    11346 > color name hx68-c 50,50,50,100
    11347 
    11348 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    11349 
    11350  
    11351 
    11352 > color name hx69-t 40,40,40,50
    11353 
    11354 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    11355 
    11356  
    11357 
    11358 > color name hx69-c 40,40,40,100
    11359 
    11360 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    11361 
    11362  
    11363 
    11364 > color name srl-t 50,50,50,50
    11365 
    11366 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    11367 
    11368  
    11369 
    11370 > color name srl-t 50,50,50,100
    11371 
    11372 Color 'srl-t' is opaque: gray(50%) hex: #808080
    11373 
    11374  
    11375 
    11376 > color name lightgrayt 83,83,83,50
    11377 
    11378 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    11379 
    11380  
    11381 
    11382 > color name silvert 75,75,75,50
    11383 
    11384 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    11385 
    11386  
    11387 
    11388 > color name grayt 50,50,50,50
    11389 
    11390 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    11391 
    11392  
    11393 
    11394 > color name lightcyant 88,100,100,50
    11395 
    11396 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    11397 #e0ffff80
    11398 
    11399  
    11400 
    11401 > color name yellowt 100,90,0,50
    11402 
    11403 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    11404 
    11405  
    11406 
    11407 > color name deeppinkt 100,8,58,50
    11408 
    11409 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    11410 
    11411  
    11412 
    11413 > color name oranget 100,65,0,50
    11414 
    11415 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    11416 
    11417  
    11418 
    11419 > color name yellowgreent 60,80,20,50
    11420 
    11421 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    11422 #99cc3380
    11423 
    11424  
    11425 
    11426 > color name darkmagentat 54,0,54,50
    11427 
    11428 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    11429 #8a008a80
    11430 
    11431  
    11432 
    11433 > color name orchidt 86,44,84,50
    11434 
    11435 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    11436 
    11437  
    11438 
    11439 > color name paleturquoiset 69,93,93,50
    11440 
    11441 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    11442 #b0eded80
    11443 
    11444  
    11445 
    11446 > color name pinkt 100,75,80,50
    11447 
    11448 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    11449 
    11450  
    11451 
    11452 > color name darkgreent 0,39,0,50
    11453 
    11454 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    11455 
    11456  
    11457 
    11458 > color name limegreent 20,80,20,50
    11459 
    11460 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    11461 
    11462  
    11463 
    11464 > color name turquoiset 25,88,82,50
    11465 
    11466 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    11467 
    11468  
    11469 
    11470 > color name tealt 0,50,50,50
    11471 
    11472 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    11473 
    11474  
    11475 
    11476 > color name darkoranget 100,50,0,50
    11477 
    11478 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    11479 #ff800080
    11480 
    11481  
    11482 
    11483 > color name lightyellowt 100,100,50,50
    11484 
    11485 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    11486 #ffff8080
    11487 
    11488  
    11489 
    11490 > color name goldt 100,75,0,50
    11491 
    11492 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    11493 
    11494  
    11495 
    11496 > color name plumt 87,63,87,50
    11497 
    11498 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    11499 
    11500  
    11501 
    11502 > color name ssubluet 68,86,90,50
    11503 
    11504 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    11505 
    11506  
    11507 
    11508 > color name p-prect 10,41,0,50
    11509 
    11510 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    11511 
    11512  
    11513 
    11514 > color name p-h2t 23,59,0,50
    11515 
    11516 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    11517 
    11518  
    11519 
    11520 > color name p-h1t 40,73,0,50
    11521 
    11522 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    11523 
    11524  
    11525 
    11526 > color name p-h1c 40,73,0,100
    11527 
    11528 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    11529 
    11530  
    11531 
    11532 > color name p-spct 68,81,0,50
    11533 
    11534 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    11535 
    11536  
    11537 
    11538 > color name p-spcc 68,81,0,100
    11539 
    11540 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    11541 
    11542  
    11543 
    11544 > color name p-fat 82,92,0,50
    11545 
    11546 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    11547 
    11548  
    11549 
    11550 > color name p-postt 100,92,0,50
    11551 
    11552 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    11553 
    11554  
    11555 
    11556 > color name d-t 100,80,4,50
    11557 
    11558 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    11559 
    11560  
    11561 
    11562 > color name d-prect 95,100,50,50
    11563 
    11564 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    11565 
    11566  
    11567 
    11568 > color name d-h2t 100,90,4,50
    11569 
    11570 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    11571 
    11572  
    11573 
    11574 > color name d-h1t 100,80,4,50
    11575 
    11576 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    11577 
    11578  
    11579 
    11580 > color name d-spct 100,70,4,50
    11581 
    11582 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    11583 
    11584  
    11585 
    11586 > color name d-fat 100,55,4,50
    11587 
    11588 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    11589 
    11590  
    11591 
    11592 > color name d-fac 100,55,4,100
    11593 
    11594 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    11595 
    11596  
    11597 
    11598 > color name d-postt 100,40,4,50
    11599 
    11600 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    11601 
    11602  
    11603 
    11604 > color name m-t 95,43,62,50
    11605 
    11606 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    11607 
    11608  
    11609 
    11610 > color name m-prect 100,85,95,50
    11611 
    11612 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    11613 
    11614  
    11615 
    11616 > color name m-h2t 100,85,95,50
    11617 
    11618 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    11619 
    11620  
    11621 
    11622 > color name m-h1t 100,75,95,50
    11623 
    11624 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    11625 
    11626  
    11627 
    11628 > color name m-spct 89,63,75,50
    11629 
    11630 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    11631 
    11632  
    11633 
    11634 > color name m-fat 95,51,75,50
    11635 
    11636 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    11637 
    11638  
    11639 
    11640 > color name m-fac 95,51,75,100
    11641 
    11642 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    11643 
    11644  
    11645 
    11646 > color name m-postt 95,43,62,50
    11647 
    11648 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    11649 
    11650  
    11651 executed 70S_colors.cxc 
    11652 
    11653 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    11654 
    11655 > color 100,100,100,50
    11656 
    11657 > color lsu silvert
    11658 
    11659 > color /3 lightgrayt
    11660 
    11661 > color /5 lightgrayt
    11662 
    11663 > color ssu ssu-t
    11664 
    11665 > color head head-t
    11666 
    11667 > color efg efg-t
    11668 
    11669 > color dt d-t
    11670 
    11671 > color pt p-t
    11672 
    11673 > color pep p-t
    11674 
    11675 > color mrna m-t
    11676 
    11677 executed 70S_colorstandard.cxc 
    11678 
    11679 > windowsize 1000 1000
    11680 
    11681 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    11682 
    11683 > color h18 h18-t
    11684 
    11685 > color h23 h23-t
    11686 
    11687 > color h24 h24-t
    11688 
    11689 > color h28 h28-t
    11690 
    11691 > color h29 h29-t
    11692 
    11693 > color h30 h30-t
    11694 
    11695 > color h31 h31-t
    11696 
    11697 > color h34 h34-t
    11698 
    11699 > color h35 h35-t
    11700 
    11701 > color h36 h36-t
    11702 
    11703 > color h44 h44-t
    11704 
    11705 > color H69 hx69-t
    11706 
    11707 executed 70S_color_helices.cxc 
    11708 
    11709 > color h30|h36|h35 head-t
    11710 
    11711 > view dc3
    11712 
    11713 > surface cap true
    11714 
    11715 > color zone #12.1 near #12.3,5 distance 5
    11716 
    11717 > color zone #13.1 near #13.3,5 distance 5
    11718 
    11719 > color zone #14.1 near #14.3,5 distance 5
    11720 
    11721 > color zone #30.1 near #30.3,5 distance 5
    11722 
    11723 > color zone #31.1 near #31.3,5 distance 5
    11724 
    11725 > color zone #32.1 near #32.3,5 distance 5
    11726 
    11727 > color zone #33.1 near #33.3,5 distance 5
    11728 
    11729 > color zone #34.1 near #34.3,5 distance 5
    11730 
    11731 > color zone #30.9 near #30.3,5 distance 5
    11732 
    11733 > color zone #31.9 near #31.3,5 distance 5
    11734 
    11735 > color zone #32.9 near #32.3,5 distance 5
    11736 
    11737 > color zone #33.9 near #33.3,5 distance 5
    11738 
    11739 > color zone #34.9 near #34.3,5 distance 5
    11740 
    11741 > color h30|h36|h35 head-c
    11742 
    11743 > color h28 h28-c
    11744 
    11745 > color h29 h29-c
    11746 
    11747 > color h34 h34-c
    11748 
    11749 > color h23 h23-c
    11750 
    11751 > color h24 h24-c
    11752 
    11753 > color h31 h31-c
    11754 
    11755 > hide #!100
    11756 
    11757 > hide #101 models
    11758 
    11759 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    11760 
    11761 > transparency #*.3 0 target abc
    11762 
    11763 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    11764 
    11765 > color h18 h18-c
    11766 
    11767 > color h23 h23-c
    11768 
    11769 > color h24 h24-c
    11770 
    11771 > color h28 h28-c
    11772 
    11773 > color h29 h29-c
    11774 
    11775 > color h30 h30-c
    11776 
    11777 > color h31 h31-c
    11778 
    11779 > color h34 h34-c
    11780 
    11781 > color h35 h35-c
    11782 
    11783 > color h44 h44-c
    11784 
    11785 > color H69 hx69-c
    11786 
    11787 executed 70S_color_helices-s.cxc 
    11788 
    11789 > color /v d-c
    11790 
    11791 > color /y p-c
    11792 
    11793 > color /w m-c
    11794 
    11795 executed gtpys_dc.cxc 
    11796 
    11797 > surface cap true
    11798 
    11799 > lighting gentle
    11800 
    11801 > lighting intensity .2
    11802 
    11803 > size stickRadius 0.17
    11804 
    11805 Changed 1744812 bond radii 
    11806 
    11807 > nucribthin
    11808 
    11809 > style ringFill thin
    11810 
    11811 Changed 122200 residue ring styles 
    11812 
    11813 > graphics silhouettes true color black
    11814 
    11815 > ~select
    11816 
    11817 Nothing selected 
    11818 
    11819 > ~select
    11820 
    11821 Nothing selected 
    11822 
    11823 > ~ribbon
    11824 
    11825 > ~display
    11826 
    11827 > ribbon
    11828 
    11829 > ~ribbon mrna
    11830 
    11831 > display mrna
    11832 
    11833 > display antiplus
    11834 
    11835 > display /x:505-514,584
    11836 
    11837 > display /6:1492,1493,530,532,1054,1400,1397
    11838 
    11839 > display /3:1913
    11840 
    11841 > display #*.3/L:44
    11842 
    11843 > hide models
    11844 
    11845 > show #31.3,5 models
    11846 
    11847 > view dc1
    11848 
    11849 > windowsize 1000 1000
    11850 
    11851 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    11852 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11853 
    11854 > view dc2
    11855 
    11856 > windowsize 1000 1000
    11857 
    11858 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    11859 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11860 
    11861 > hide models
    11862 
    11863 > show #32.3,5 models
    11864 
    11865 > windowsize 1000 1000
    11866 
    11867 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    11868 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11869 
    11870 > view dc2
    11871 
    11872 > windowsize 1000 1000
    11873 
    11874 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    11875 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11876 
    11877 > hide models
    11878 
    11879 > show #12.3,5 models
    11880 
    11881 > view dc1
    11882 
    11883 > windowsize 1000 1000
    11884 
    11885 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    11886 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11887 
    11888 > view dc2
    11889 
    11890 > windowsize 1000 1000
    11891 
    11892 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    11893 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11894 
    11895 > hide models
    11896 
    11897 > show #33.3,5 models
    11898 
    11899 > view dc1
    11900 
    11901 > windowsize 1000 1000
    11902 
    11903 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    11904 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11905 
    11906 > view dc2
    11907 
    11908 > windowsize 1000 1000
    11909 
    11910 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    11911 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11912 
    11913 > hide models
    11914 
    11915 > show #34.3,5 models
    11916 
    11917 > view dc1
    11918 
    11919 > windowsize 1000 1000
    11920 
    11921 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    11922 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11923 
    11924 > view dc2
    11925 
    11926 > windowsize 1000 1000
    11927 
    11928 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    11929 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11930 
    11931 > hide models
    11932 
    11933 > show #13.3,5 models
    11934 
    11935 > view dc1
    11936 
    11937 > windowsize 1000 1000
    11938 
    11939 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    11940 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11941 
    11942 > view dc2
    11943 
    11944 > windowsize 1000 1000
    11945 
    11946 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    11947 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11948 
    11949 > hide models
    11950 
    11951 > show #14.3,5 models
    11952 
    11953 > ~display #14.3/w:38,49
    11954 
    11955 > view dc1
    11956 
    11957 > windowsize 1000 1000
    11958 
    11959 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    11960 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11961 
    11962 > view dc2
    11963 
    11964 > windowsize 1000 1000
    11965 
    11966 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    11967 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    11968 
    11969 > graphics silhouettes true color 25,25,25,15
    11970 
    11971 > style ringFill thick
    11972 
    11973 Changed 122200 residue ring styles 
    11974 
    11975 > ~cartoon /6/3
    11976 
    11977 > display /6/3
    11978 
    11979 > ~cartoon trna
    11980 
    11981 > display trna
    11982 
    11983 > volume emmaps style surface step 1 level 3
    11984 
    11985 > surface dust emmaps size 2
    11986 
    11987 > volume emmaps surfaceSmoothing true
    11988 
    11989 > view dc3
    11990 
    11991 > hide models
    11992 
    11993 > show #30 models
    11994 
    11995 > select #30.3
    11996 
    11997 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    11998 
    11999 > hide #30.9 models
    12000 
    12001 > windowsize 1000 1000
    12002 
    12003 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    12004 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12005 
    12006 > hide models
    12007 
    12008 > show #31 models
    12009 
    12010 > select #31.3
    12011 
    12012 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    12013 
    12014 > hide #31.9 models
    12015 
    12016 > windowsize 1000 1000
    12017 
    12018 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    12019 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12020 
    12021 > hide models
    12022 
    12023 > show #32 models
    12024 
    12025 > select #32.3
    12026 
    12027 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    12028 
    12029 > hide #32.9 models
    12030 
    12031 > windowsize 1000 1000
    12032 
    12033 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    12034 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12035 
    12036 > hide models
    12037 
    12038 > show #12 models
    12039 
    12040 > select #12.3
    12041 
    12042 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    12043 
    12044 > windowsize 1000 1000
    12045 
    12046 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    12047 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12048 
    12049 > hide models
    12050 
    12051 > show #33 models
    12052 
    12053 > select #33.3
    12054 
    12055 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    12056 
    12057 > hide #33.9 models
    12058 
    12059 > windowsize 1000 1000
    12060 
    12061 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    12062 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12063 
    12064 > hide models
    12065 
    12066 > show #34 models
    12067 
    12068 > select #34.3
    12069 
    12070 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    12071 
    12072 > hide #34.9 models
    12073 
    12074 > windowsize 1000 1000
    12075 
    12076 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    12077 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12078 
    12079 > hide models
    12080 
    12081 > show #13 models
    12082 
    12083 > select #13.3
    12084 
    12085 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    12086 
    12087 > windowsize 1000 1000
    12088 
    12089 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    12090 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12091 
    12092 > hide models
    12093 
    12094 > show #14 models
    12095 
    12096 > ~display #14.3/w:38,49
    12097 
    12098 > select #14.3
    12099 
    12100 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    12101 
    12102 > windowsize 1000 1000
    12103 
    12104 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    12105 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12106 
    12107 > volume emmaps style surface step 1 level 8
    12108 
    12109 > surface dust emmaps size 2
    12110 
    12111 > volume emmaps surfaceSmoothing true
    12112 
    12113 > hide models
    12114 
    12115 > show #30.3,5,9 models
    12116 
    12117 > select #30.3
    12118 
    12119 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    12120 
    12121 > windowsize 1000 1000
    12122 
    12123 > save
    12124 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1a-FR.tif
    12125 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12126 
    12127 > hide models
    12128 
    12129 > show #31.3,5,9 models
    12130 
    12131 > select #31.3
    12132 
    12133 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    12134 
    12135 > windowsize 1000 1000
    12136 
    12137 > save
    12138 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1b-FR.tif
    12139 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12140 
    12141 > hide models
    12142 
    12143 > show #32.3,5,9 models
    12144 
    12145 > select #32.3
    12146 
    12147 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    12148 
    12149 > windowsize 1000 1000
    12150 
    12151 > save
    12152 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1c-FR.tif
    12153 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12154 
    12155 > hide models
    12156 
    12157 > show #33.3,5,9 models
    12158 
    12159 > select #33.3
    12160 
    12161 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    12162 
    12163 > windowsize 1000 1000
    12164 
    12165 > save
    12166 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysI1a-FR.tif
    12167 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    12168 
    12169 > hide models
    12170 
    12171 > show #34.3,5,9 models
    12172 
    12173 > select #34.3
    12174 
    12175 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    12176 
    12177 > windowsize 1000 1000
    12178 
    12179 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_I1bys-
    12180 > FR.tif format tiff width 1000 height 1000 supersample 20
    12181 > transparentBackground true
    12182 
    12183 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    12184 
    12185 ——— End of log from Mon Jun 12 17:35:46 2023 ———
    12186 
    12187 opened ChimeraX session 
    12188 
    12189 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    12190 
    12191 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    12192 
    12193 > name atomods #*.3|#*.5
    12194 
    12195 > name emmaps #*.1|#*.7|#*.8|#*.9
    12196 
    12197 > name lsu #*.5
    12198 
    12199 > name lsumap #*.8
    12200 
    12201 > name ssu #*.3
    12202 
    12203 > name ssumap #*.7
    12204 
    12205 > name ligmap #*.9
    12206 
    12207 > name rna /y,v,w,3,6,5
    12208 
    12209 > name r23s /3
    12210 
    12211 > name r16s /6
    12212 
    12213 > name r5s /5
    12214 
    12215 > name pt /y
    12216 
    12217 > name dt /v
    12218 
    12219 > name efg /x
    12220 
    12221 > name pep /p
    12222 
    12223 > name mrna /w
    12224 
    12225 > name GSP :GSP
    12226 
    12227 > name GDP :GDP
    12228 
    12229 > name GTP :GTP
    12230 
    12231 > name ntide :GTP|:GDP|:GSP
    12232 
    12233 > name spc :SCM
    12234 
    12235 > name fua :FUA
    12236 
    12237 > name par :PAR
    12238 
    12239 > name argb :LIG
    12240 
    12241 > name drugs argb|par|fua|spc
    12242 
    12243 > name D1 /x:start-293
    12244 
    12245 > name D2 /x:294-410
    12246 
    12247 > name D3 /x:411-489
    12248 
    12249 > name D4 /x:490-612
    12250 
    12251 > name D5 /x:613-end
    12252 
    12253 > name sw1 /x:38-65
    12254 
    12255 > name sw2 /x:89-108
    12256 
    12257 > name pl /x:18-25
    12258 
    12259 > name nkxd /x:142-146
    12260 
    12261 > name mg /x:MG
    12262 
    12263 > name trna /y,v
    12264 
    12265 > name anticodon /y,v:34-36
    12266 
    12267 > name antiplus /y,v:32-38
    12268 
    12269 > name cca /y,v:74-76
    12270 
    12271 > name astem /y,v:1-7,66-73
    12272 
    12273 > name darm /y,v:8-25
    12274 
    12275 > name aarm /y,v:26-43
    12276 
    12277 > name varm /y,v:44-48
    12278 
    12279 > name tarm /y,v:49-65
    12280 
    12281 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    12282 
    12283 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    12284 
    12285 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    12286 
    12287 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    12288 
    12289 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    12290 
    12291 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    12292 
    12293 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    12294 
    12295 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    12296 
    12297 > name h8 /6:144-178
    12298 
    12299 > name h14 /6:339-350
    12300 
    12301 > name h18 /6:511-540
    12302 
    12303 > name h23 /6:674-716
    12304 
    12305 > name h24 /6:769-810
    12306 
    12307 > name h27 /6:894-905
    12308 
    12309 > name h28 /6:921-937,1379-1400
    12310 
    12311 > name h29 /6:938-943,1337-1346
    12312 
    12313 > name h30 /6:945-955,1225-1235
    12314 
    12315 > name h31 /6:956-975
    12316 
    12317 > name h32 /6:984-990,1215-1221
    12318 
    12319 > name h34 /6:1045-1065,1188-1211
    12320 
    12321 > name h35 /6:1066-1073,1102-1110
    12322 
    12323 > name h36 /6:1074-1083
    12324 
    12325 > name h44 /6:1401-1502
    12326 
    12327 > name h45 /6:1506-1529
    12328 
    12329 > name aploop /6:956-959
    12330 
    12331 > name term16S /6:1503-end
    12332 
    12333 > name aphelix /6:1228-1230
    12334 
    12335 > name us3 #*.3/C
    12336 
    12337 > name us5 #*.3/E
    12338 
    12339 > name us7 #*.3/G
    12340 
    12341 > name us9 #*.3/I
    12342 
    12343 > name us11 #*.3/K
    12344 
    12345 > name us12 #*.3/L
    12346 
    12347 > name us13 #*.3/M
    12348 
    12349 > name us14 #*.3/N
    12350 
    12351 > name us15 #*.3/O
    12352 
    12353 > name us9-130 #*.3/I:130
    12354 
    12355 > name l1stalk /3:2097-2191
    12356 
    12357 > name srl /3:2652-2668
    12358 
    12359 > name H68 /3:1832-1906
    12360 
    12361 > name H69 /3:1907-1924
    12362 
    12363 > name H95 /3:2647-2673
    12364 
    12365 > name ul2 #*.5/B
    12366 
    12367 > name ul5 #*.5/E
    12368 
    12369 > name ul14 #*.5/N
    12370 
    12371 > name ul19 #*.5/S
    12372 
    12373 > name ul31 #*.5/e
    12374 
    12375 executed 70S_assign.cxc 
    12376 
    12377 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    12378 
    12379 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    12380 
    12381 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    12382 
    12383 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    12384 
    12385 > alias licorice car style protein modeh default arrows f xsect oval width 1
    12386 > thick 1;
    12387 
    12388 > dssp
    12389 
    12390 > windowsize 1000 1000
    12391 
    12392 > set bgColor white
    12393 
    12394 > lighting full
    12395 
    12396 > set silhouettes true
    12397 
    12398 > set silhouetteWidth 1.7
    12399 
    12400 > set silhouettes true
    12401 
    12402 > set silhouetteDepthJump 0.02
    12403 
    12404 > cartoon style width 2.5
    12405 
    12406 > size atomRadius 2
    12407 
    12408 Changed 1614330 atom radii 
    12409 
    12410 > nucleotides fill
    12411 
    12412 > size ions atomRadius 1.6
    12413 
    12414 Changed 31 atom radii 
    12415 
    12416 > size stickRadius 0.1
    12417 
    12418 Changed 1744812 bond radii 
    12419 
    12420 > style stick ringFill thin
    12421 
    12422 Changed 1614330 atom styles, 122200 residue ring styles 
    12423 
    12424 > show ribbons
    12425 
    12426 > hide H
    12427 
    12428 > hide :HOH
    12429 
    12430 > hide target a
    12431 
    12432 > show nucleic target a
    12433 
    12434 > show drugs target a
    12435 
    12436 > style drugs ball
    12437 
    12438 Changed 106 atom styles 
    12439 
    12440 > nucrib
    12441 
    12442 > graphics selection color black
    12443 
    12444 > volume emmaps style surface step 1 level 4
    12445 
    12446 > surface dust emmaps size 3
    12447 
    12448 > volume surfaceSmoothing true
    12449 
    12450 > cartoon tether trna shape cone opacity 1
    12451 
    12452 > dssp
    12453 
    12454 executed 70S_display.cxc 
    12455 
    12456 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    12457 
    12458 > color name efg-t 100,0,0,50
    12459 
    12460 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    12461 
    12462  
    12463 
    12464 > color name sw1-t 100,92,0,50
    12465 
    12466 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    12467 
    12468  
    12469 
    12470 > color name sw2-t 68,81,0,50
    12471 
    12472 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    12473 
    12474  
    12475 
    12476 > color name pl-t 23,59,0,50
    12477 
    12478 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    12479 
    12480  
    12481 
    12482 > color name d1-t 100,18,4,50
    12483 
    12484 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    12485 
    12486  
    12487 
    12488 > color name d2-t 100,40,4,50
    12489 
    12490 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    12491 
    12492  
    12493 
    12494 > color name d3-t 100,27,36,50
    12495 
    12496 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    12497 
    12498  
    12499 
    12500 > color name d4-t 80,0,23,50
    12501 
    12502 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    12503 
    12504  
    12505 
    12506 > color name d5-t 100,60,4,50
    12507 
    12508 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    12509 
    12510  
    12511 
    12512 > color name fa-t 100,90,4,50
    12513 
    12514 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    12515 
    12516  
    12517 
    12518 > color name gtp-t 45,53,60,50
    12519 
    12520 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    12521 
    12522  
    12523 
    12524 > color name mg-t 1,39,16,50
    12525 
    12526 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    12527 
    12528  
    12529 
    12530 > color name spc-t 100,0,0,50
    12531 
    12532 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    12533 
    12534  
    12535 
    12536 > color name argb-t 50,0,50,50
    12537 
    12538 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    12539 
    12540  
    12541 
    12542 > color name g-1t 98,42,30,50
    12543 
    12544 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    12545 
    12546  
    12547 
    12548 > color name g-2t 95,35,25,50
    12549 
    12550 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    12551 
    12552  
    12553 
    12554 > color name g-3t 92,28,20,50
    12555 
    12556 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    12557 
    12558  
    12559 
    12560 > color name g-4t 89,21,15,50
    12561 
    12562 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    12563 
    12564  
    12565 
    12566 > color name g-5t 86,14,10,50
    12567 
    12568 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    12569 
    12570  
    12571 
    12572 > color name g-6t 83,7,5,50
    12573 
    12574 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    12575 
    12576  
    12577 
    12578 > color name g-7t 80,0,0,50
    12579 
    12580 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    12581 
    12582  
    12583 
    12584 > color name p-t 40,60,2,50
    12585 
    12586 Color 'p-t' is 50% transparent: rgba(40%, 60%, 2%, 50%) hex: #66990580
    12587 
    12588  
    12589 
    12590 > color name p-c 40,60,2,100
    12591 
    12592 Color 'p-c' is opaque: rgb(40%, 60%, 2%) hex: #669905
    12593 
    12594  
    12595 
    12596 > color name p-1t 4,34,1,50
    12597 
    12598 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    12599 
    12600  
    12601 
    12602 > color name p-2t 12,39,1,50
    12603 
    12604 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    12605 
    12606  
    12607 
    12608 > color name p-3t 20,44,1,50
    12609 
    12610 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    12611 
    12612  
    12613 
    12614 > color name p-4t 28,49,1,50
    12615 
    12616 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    12617 
    12618  
    12619 
    12620 > color name p-5t 36,54,2,50
    12621 
    12622 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    12623 
    12624  
    12625 
    12626 > color name p-6t 44,59,2,50
    12627 
    12628 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    12629 
    12630  
    12631 
    12632 > color name p-7t 52,64,2,50
    12633 
    12634 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    12635 
    12636  
    12637 
    12638 > color name p-8t 60,69,2,50
    12639 
    12640 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    12641 
    12642  
    12643 
    12644 > color name p-9t 68,74,3,50
    12645 
    12646 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    12647 
    12648  
    12649 
    12650 > color name p-10t 76,79,3,50
    12651 
    12652 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    12653 
    12654  
    12655 
    12656 > color name p-11t 84,84,3,50
    12657 
    12658 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    12659 
    12660  
    12661 
    12662 > color name d-t 100,75,4,50
    12663 
    12664 Color 'd-t' is 50% transparent: rgba(100%, 75%, 4%, 50%) hex: #ffbf0a80
    12665 
    12666  
    12667 
    12668 > color name d-c 100,75,4,100
    12669 
    12670 Color 'd-c' is opaque: rgb(100%, 75%, 4%) hex: #ffbf0a
    12671 
    12672  
    12673 
    12674 > color name d-1t 100,100,4,50
    12675 
    12676 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    12677 
    12678  
    12679 
    12680 > color name d-2t 100,93,4,50
    12681 
    12682 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    12683 
    12684  
    12685 
    12686 > color name d-3t 100,86,4,50
    12687 
    12688 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    12689 
    12690  
    12691 
    12692 > color name d-4t 100,79,4,50
    12693 
    12694 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    12695 
    12696  
    12697 
    12698 > color name d-5t 100,72,4,50
    12699 
    12700 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    12701 
    12702  
    12703 
    12704 > color name d-6t 100,65,4,50
    12705 
    12706 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    12707 
    12708  
    12709 
    12710 > color name d-7t 100,58,4,50
    12711 
    12712 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    12713 
    12714  
    12715 
    12716 > color name d-8t 100,51,4,50
    12717 
    12718 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    12719 
    12720  
    12721 
    12722 > color name d-9t 100,44,4,50
    12723 
    12724 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    12725 
    12726  
    12727 
    12728 > color name d-10t 100,37,4,50
    12729 
    12730 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    12731 
    12732  
    12733 
    12734 > color name d-11t 100,30,4,50
    12735 
    12736 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    12737 
    12738  
    12739 
    12740 > color name m-t 95,43,62,50
    12741 
    12742 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    12743 
    12744  
    12745 
    12746 > color name m-c 95,43,62,100
    12747 
    12748 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    12749 
    12750  
    12751 
    12752 > color name m-1t 100,80,90,50
    12753 
    12754 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    12755 
    12756  
    12757 
    12758 > color name m-2t 98,76,87,50
    12759 
    12760 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    12761 
    12762  
    12763 
    12764 > color name m-3t 96,72,84,50
    12765 
    12766 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    12767 
    12768  
    12769 
    12770 > color name m-4t 94,68,81,50
    12771 
    12772 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    12773 
    12774  
    12775 
    12776 > color name m-5t 92,64,78,50
    12777 
    12778 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    12779 
    12780  
    12781 
    12782 > color name m-6t 90,60,75,50
    12783 
    12784 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    12785 
    12786  
    12787 
    12788 > color name m-7t 88,56,72,50
    12789 
    12790 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    12791 
    12792  
    12793 
    12794 > color name m-8t 86,52,69,50
    12795 
    12796 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    12797 
    12798  
    12799 
    12800 > color name m-9t 84,48,66,50
    12801 
    12802 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    12803 
    12804  
    12805 
    12806 > color name m-10t 82,44,63,50
    12807 
    12808 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    12809 
    12810  
    12811 
    12812 > color name m-11t 80,40,60,50
    12813 
    12814 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    12815 
    12816  
    12817 
    12818 > color name head-t 71,51,66,50
    12819 
    12820 Color 'head-t' is 50% transparent: rgba(71%, 51%, 66%, 50%) hex: #b582a880
    12821 
    12822  
    12823 
    12824 > color name head-c 89,89,100,100
    12825 
    12826 Color 'head-c' is opaque: rgb(89%, 89%, 100%) hex: #e3e3ff
    12827 
    12828  
    12829 
    12830 > color name headfa-t 80,79,100,50
    12831 
    12832 Color 'headfa-t' is 50% transparent: rgba(80%, 79%, 100%, 50%) hex: #ccc9ff80
    12833 
    12834  
    12835 
    12836 > color name headblue-t 59,78,94,50
    12837 
    12838 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    12839 
    12840  
    12841 
    12842 > color name headh1-t 41,64,100,50
    12843 
    12844 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    12845 
    12846  
    12847 
    12848 > color name headh2-t 50,70,100,50
    12849 
    12850 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    12851 
    12852  
    12853 
    12854 > color name headgray-t 60,60,60,50
    12855 
    12856 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    12857 
    12858  
    12859 
    12860 > color name darkhead-s 58,34,52,100
    12861 
    12862 Color 'darkhead-s' is opaque: rgb(58%, 34%, 52%) hex: #945785
    12863 
    12864  
    12865 
    12866 > color name bodywhite-t 90,90,90,50
    12867 
    12868 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    12869 #e6e6e680
    12870 
    12871  
    12872 
    12873 > color name rps-t 75,88,93,50
    12874 
    12875 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    12876 
    12877  
    12878 
    12879 > color name ssu-t 57,71,75,50
    12880 
    12881 Color 'ssu-t' is 50% transparent: rgba(57%, 71%, 75%, 50%) hex: #91b5bf80
    12882 
    12883  
    12884 
    12885 > color name h18-t 31,59,68,50
    12886 
    12887 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    12888 
    12889  
    12890 
    12891 > color name h18-c 31,59,68,100
    12892 
    12893 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    12894 
    12895  
    12896 
    12897 > color name h23-t 18,36,100,50
    12898 
    12899 Color 'h23-t' is 50% transparent: rgba(18%, 36%, 100%, 50%) hex: #2e5cff80
    12900 
    12901  
    12902 
    12903 > color name h23-c 18,36,100,100
    12904 
    12905 Color 'h23-c' is opaque: rgb(18%, 36%, 100%) hex: #2e5cff
    12906 
    12907  
    12908 
    12909 > color name h24-t 50,70,90,50
    12910 
    12911 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    12912 
    12913  
    12914 
    12915 > color name h24-c 50,70,90,100
    12916 
    12917 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    12918 
    12919  
    12920 
    12921 > color name h28-t 0,24,57,50
    12922 
    12923 Color 'h28-t' is 50% transparent: rgba(0%, 24%, 57%, 50%) hex: #003d9180
    12924 
    12925  
    12926 
    12927 > color name h28-c 0,24,57,100
    12928 
    12929 Color 'h28-c' is opaque: rgb(0%, 24%, 57%) hex: #003d91
    12930 
    12931  
    12932 
    12933 > color name h29-t 80,69,92,50
    12934 
    12935 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    12936 
    12937  
    12938 
    12939 > color name h29-c 80,69,92,100
    12940 
    12941 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    12942 
    12943  
    12944 
    12945 > color name h30-t 40,40,59,50
    12946 
    12947 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    12948 
    12949  
    12950 
    12951 > color name h30-c 40,40,59,100
    12952 
    12953 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    12954 
    12955  
    12956 
    12957 > color name h31-t 45,18,59,50
    12958 
    12959 Color 'h31-t' is 50% transparent: rgba(45%, 18%, 59%, 50%) hex: #732e9680
    12960 
    12961  
    12962 
    12963 > color name h31-c 45,18,59,100
    12964 
    12965 Color 'h31-c' is opaque: rgb(45%, 18%, 59%) hex: #732e96
    12966 
    12967  
    12968 
    12969 > color name h34-t 59,18,59,50
    12970 
    12971 Color 'h34-t' is 50% transparent: rgba(59%, 18%, 59%, 50%) hex: #962e9680
    12972 
    12973  
    12974 
    12975 > color name h34-c 59,18,59,100
    12976 
    12977 Color 'h34-c' is opaque: rgb(59%, 18%, 59%) hex: #962e96
    12978 
    12979  
    12980 
    12981 > color name h35-t 50,22,45,50
    12982 
    12983 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    12984 
    12985  
    12986 
    12987 > color name h35-c 50,22,45,100
    12988 
    12989 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    12990 
    12991  
    12992 
    12993 > color name h44-t 27,50,80,50
    12994 
    12995 Color 'h44-t' is 50% transparent: rgba(27%, 50%, 80%, 50%) hex: #4580cc80
    12996 
    12997  
    12998 
    12999 > color name h44-c 27,50,80,100
    13000 
    13001 Color 'h44-c' is opaque: rgb(27%, 50%, 80%) hex: #4580cc
    13002 
    13003  
    13004 
    13005 > color name aploop-t 27,0,50,50
    13006 
    13007 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    13008 
    13009  
    13010 
    13011 > color name term16-t 40,64,64,50
    13012 
    13013 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    13014 
    13015  
    13016 
    13017 > color name uS3-t 64,41,82,50
    13018 
    13019 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    13020 
    13021  
    13022 
    13023 > color name uS5-t 0,50,45,50
    13024 
    13025 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    13026 
    13027  
    13028 
    13029 > color name gray-t 70,70,70,50
    13030 
    13031 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    13032 
    13033  
    13034 
    13035 > color name hx68-t 50,50,50,50
    13036 
    13037 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    13038 
    13039  
    13040 
    13041 > color name hx68-c 50,50,50,100
    13042 
    13043 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    13044 
    13045  
    13046 
    13047 > color name hx69-t 40,40,40,50
    13048 
    13049 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    13050 
    13051  
    13052 
    13053 > color name hx69-c 40,40,40,100
    13054 
    13055 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    13056 
    13057  
    13058 
    13059 > color name srl-t 50,50,50,50
    13060 
    13061 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    13062 
    13063  
    13064 
    13065 > color name srl-t 50,50,50,100
    13066 
    13067 Color 'srl-t' is opaque: gray(50%) hex: #808080
    13068 
    13069  
    13070 
    13071 > color name lightgrayt 83,83,83,50
    13072 
    13073 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    13074 
    13075  
    13076 
    13077 > color name silvert 75,75,75,50
    13078 
    13079 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    13080 
    13081  
    13082 
    13083 > color name grayt 50,50,50,50
    13084 
    13085 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    13086 
    13087  
    13088 
    13089 > color name lightcyant 88,100,100,50
    13090 
    13091 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    13092 #e0ffff80
    13093 
    13094  
    13095 
    13096 > color name yellowt 100,90,0,50
    13097 
    13098 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    13099 
    13100  
    13101 
    13102 > color name deeppinkt 100,8,58,50
    13103 
    13104 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    13105 
    13106  
    13107 
    13108 > color name oranget 100,65,0,50
    13109 
    13110 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    13111 
    13112  
    13113 
    13114 > color name yellowgreent 60,80,20,50
    13115 
    13116 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    13117 #99cc3380
    13118 
    13119  
    13120 
    13121 > color name darkmagentat 54,0,54,50
    13122 
    13123 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    13124 #8a008a80
    13125 
    13126  
    13127 
    13128 > color name orchidt 86,44,84,50
    13129 
    13130 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    13131 
    13132  
    13133 
    13134 > color name paleturquoiset 69,93,93,50
    13135 
    13136 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    13137 #b0eded80
    13138 
    13139  
    13140 
    13141 > color name pinkt 100,75,80,50
    13142 
    13143 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    13144 
    13145  
    13146 
    13147 > color name darkgreent 0,39,0,50
    13148 
    13149 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    13150 
    13151  
    13152 
    13153 > color name limegreent 20,80,20,50
    13154 
    13155 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    13156 
    13157  
    13158 
    13159 > color name turquoiset 25,88,82,50
    13160 
    13161 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    13162 
    13163  
    13164 
    13165 > color name tealt 0,50,50,50
    13166 
    13167 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    13168 
    13169  
    13170 
    13171 > color name darkoranget 100,50,0,50
    13172 
    13173 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    13174 #ff800080
    13175 
    13176  
    13177 
    13178 > color name lightyellowt 100,100,50,50
    13179 
    13180 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    13181 #ffff8080
    13182 
    13183  
    13184 
    13185 > color name goldt 100,75,0,50
    13186 
    13187 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    13188 
    13189  
    13190 
    13191 > color name plumt 87,63,87,50
    13192 
    13193 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    13194 
    13195  
    13196 
    13197 > color name ssubluet 68,86,90,50
    13198 
    13199 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    13200 
    13201  
    13202 
    13203 > color name p-prect 10,41,0,50
    13204 
    13205 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    13206 
    13207  
    13208 
    13209 > color name p-h2t 23,59,0,50
    13210 
    13211 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    13212 
    13213  
    13214 
    13215 > color name p-h1t 40,73,0,50
    13216 
    13217 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    13218 
    13219  
    13220 
    13221 > color name p-h1c 40,73,0,100
    13222 
    13223 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    13224 
    13225  
    13226 
    13227 > color name p-spct 68,81,0,50
    13228 
    13229 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    13230 
    13231  
    13232 
    13233 > color name p-spcc 68,81,0,100
    13234 
    13235 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    13236 
    13237  
    13238 
    13239 > color name p-fat 82,92,0,50
    13240 
    13241 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    13242 
    13243  
    13244 
    13245 > color name p-postt 100,92,0,50
    13246 
    13247 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    13248 
    13249  
    13250 
    13251 > color name d-t 100,80,4,50
    13252 
    13253 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    13254 
    13255  
    13256 
    13257 > color name d-prect 95,100,50,50
    13258 
    13259 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    13260 
    13261  
    13262 
    13263 > color name d-h2t 100,90,4,50
    13264 
    13265 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    13266 
    13267  
    13268 
    13269 > color name d-h1t 100,80,4,50
    13270 
    13271 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    13272 
    13273  
    13274 
    13275 > color name d-spct 100,70,4,50
    13276 
    13277 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    13278 
    13279  
    13280 
    13281 > color name d-fat 100,55,4,50
    13282 
    13283 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    13284 
    13285  
    13286 
    13287 > color name d-fac 100,55,4,100
    13288 
    13289 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    13290 
    13291  
    13292 
    13293 > color name d-postt 100,40,4,50
    13294 
    13295 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    13296 
    13297  
    13298 
    13299 > color name m-t 95,43,62,50
    13300 
    13301 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    13302 
    13303  
    13304 
    13305 > color name m-prect 100,85,95,50
    13306 
    13307 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    13308 
    13309  
    13310 
    13311 > color name m-h2t 100,85,95,50
    13312 
    13313 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    13314 
    13315  
    13316 
    13317 > color name m-h1t 100,75,95,50
    13318 
    13319 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    13320 
    13321  
    13322 
    13323 > color name m-spct 89,63,75,50
    13324 
    13325 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    13326 
    13327  
    13328 
    13329 > color name m-fat 95,51,75,50
    13330 
    13331 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    13332 
    13333  
    13334 
    13335 > color name m-fac 95,51,75,100
    13336 
    13337 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    13338 
    13339  
    13340 
    13341 > color name m-postt 95,43,62,50
    13342 
    13343 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    13344 
    13345  
    13346 executed 70S_colors.cxc 
    13347 
    13348 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    13349 
    13350 > color 100,100,100,50
    13351 
    13352 > color lsu silvert
    13353 
    13354 > color /3 lightgrayt
    13355 
    13356 > color /5 lightgrayt
    13357 
    13358 > color ssu ssu-t
    13359 
    13360 > color head head-t
    13361 
    13362 > color efg efg-t
    13363 
    13364 > color dt d-t
    13365 
    13366 > color pt p-t
    13367 
    13368 > color pep p-t
    13369 
    13370 > color mrna m-t
    13371 
    13372 executed 70S_colorstandard.cxc 
    13373 
    13374 > windowsize 1000 1000
    13375 
    13376 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    13377 
    13378 > color h18 h18-t
    13379 
    13380 > color h23 h23-t
    13381 
    13382 > color h24 h24-t
    13383 
    13384 > color h28 h28-t
    13385 
    13386 > color h29 h29-t
    13387 
    13388 > color h30 h30-t
    13389 
    13390 > color h31 h31-t
    13391 
    13392 > color h34 h34-t
    13393 
    13394 > color h35 h35-t
    13395 
    13396 > color h36 h36-t
    13397 
    13398 > color h44 h44-t
    13399 
    13400 > color H69 hx69-t
    13401 
    13402 executed 70S_color_helices.cxc 
    13403 
    13404 > color h30|h36|h35 head-t
    13405 
    13406 > view dc3
    13407 
    13408 > surface cap true
    13409 
    13410 > color zone #12.1 near #12.3,5 distance 5
    13411 
    13412 > color zone #13.1 near #13.3,5 distance 5
    13413 
    13414 > color zone #14.1 near #14.3,5 distance 5
    13415 
    13416 > color zone #30.1 near #30.3,5 distance 5
    13417 
    13418 > color zone #31.1 near #31.3,5 distance 5
    13419 
    13420 > color zone #32.1 near #32.3,5 distance 5
    13421 
    13422 > color zone #33.1 near #33.3,5 distance 5
    13423 
    13424 > color zone #34.1 near #34.3,5 distance 5
    13425 
    13426 > color zone #30.9 near #30.3,5 distance 5
    13427 
    13428 > color zone #31.9 near #31.3,5 distance 5
    13429 
    13430 > color zone #32.9 near #32.3,5 distance 5
    13431 
    13432 > color zone #33.9 near #33.3,5 distance 5
    13433 
    13434 > color zone #34.9 near #34.3,5 distance 5
    13435 
    13436 > color h30|h36|h35 head-c
    13437 
    13438 > color h28 h28-c
    13439 
    13440 > color h29 h29-c
    13441 
    13442 > color h34 h34-c
    13443 
    13444 > color h23 h23-c
    13445 
    13446 > color h24 h24-c
    13447 
    13448 > color h31 h31-c
    13449 
    13450 > hide #!100
    13451 
    13452 > hide #101 models
    13453 
    13454 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    13455 
    13456 > transparency #*.3 0 target abc
    13457 
    13458 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    13459 
    13460 > color h18 h18-c
    13461 
    13462 > color h23 h23-c
    13463 
    13464 > color h24 h24-c
    13465 
    13466 > color h28 h28-c
    13467 
    13468 > color h29 h29-c
    13469 
    13470 > color h30 h30-c
    13471 
    13472 > color h31 h31-c
    13473 
    13474 > color h34 h34-c
    13475 
    13476 > color h35 h35-c
    13477 
    13478 > color h44 h44-c
    13479 
    13480 > color H69 hx69-c
    13481 
    13482 executed 70S_color_helices-s.cxc 
    13483 
    13484 > color /v d-c
    13485 
    13486 > color /y p-c
    13487 
    13488 > color /w m-c
    13489 
    13490 executed gtpys_dc.cxc 
    13491 
    13492 > surface cap true
    13493 
    13494 > lighting gentle
    13495 
    13496 > lighting intensity .2
    13497 
    13498 > size stickRadius 0.17
    13499 
    13500 Changed 1744812 bond radii 
    13501 
    13502 > nucribthin
    13503 
    13504 > style ringFill thin
    13505 
    13506 Changed 122200 residue ring styles 
    13507 
    13508 > graphics silhouettes true color black
    13509 
    13510 > ~select
    13511 
    13512 Nothing selected 
    13513 
    13514 > ~select
    13515 
    13516 Nothing selected 
    13517 
    13518 > ~ribbon
    13519 
    13520 > ~display
    13521 
    13522 > ribbon
    13523 
    13524 > ~ribbon mrna
    13525 
    13526 > display mrna
    13527 
    13528 > display antiplus
    13529 
    13530 > display /x:505-514,584
    13531 
    13532 > display /6:1492,1493,530,532,1054,1400,1397
    13533 
    13534 > display /3:1913
    13535 
    13536 > display #*.3/L:44
    13537 
    13538 > hide models
    13539 
    13540 > show #31.3,5 models
    13541 
    13542 > view dc1
    13543 
    13544 > windowsize 1000 1000
    13545 
    13546 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    13547 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13548 
    13549 > view dc2
    13550 
    13551 > windowsize 1000 1000
    13552 
    13553 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    13554 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13555 
    13556 > hide models
    13557 
    13558 > show #32.3,5 models
    13559 
    13560 > windowsize 1000 1000
    13561 
    13562 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    13563 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13564 
    13565 > view dc2
    13566 
    13567 > windowsize 1000 1000
    13568 
    13569 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    13570 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13571 
    13572 > hide models
    13573 
    13574 > show #12.3,5 models
    13575 
    13576 > view dc1
    13577 
    13578 > windowsize 1000 1000
    13579 
    13580 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    13581 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13582 
    13583 > view dc2
    13584 
    13585 > windowsize 1000 1000
    13586 
    13587 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    13588 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13589 
    13590 > hide models
    13591 
    13592 > show #33.3,5 models
    13593 
    13594 > view dc1
    13595 
    13596 > windowsize 1000 1000
    13597 
    13598 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    13599 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13600 
    13601 > view dc2
    13602 
    13603 > windowsize 1000 1000
    13604 
    13605 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    13606 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13607 
    13608 > hide models
    13609 
    13610 > show #34.3,5 models
    13611 
    13612 > view dc1
    13613 
    13614 > windowsize 1000 1000
    13615 
    13616 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    13617 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13618 
    13619 > view dc2
    13620 
    13621 > windowsize 1000 1000
    13622 
    13623 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    13624 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13625 
    13626 > hide models
    13627 
    13628 > show #13.3,5 models
    13629 
    13630 > view dc1
    13631 
    13632 > windowsize 1000 1000
    13633 
    13634 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    13635 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13636 
    13637 > view dc2
    13638 
    13639 > windowsize 1000 1000
    13640 
    13641 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    13642 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13643 
    13644 > hide models
    13645 
    13646 > show #14.3,5 models
    13647 
    13648 > ~display #14.3/w:38,49
    13649 
    13650 > view dc1
    13651 
    13652 > windowsize 1000 1000
    13653 
    13654 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    13655 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13656 
    13657 > view dc2
    13658 
    13659 > windowsize 1000 1000
    13660 
    13661 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    13662 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13663 
    13664 > graphics silhouettes true color 25,25,25,15
    13665 
    13666 > style ringFill thick
    13667 
    13668 Changed 122200 residue ring styles 
    13669 
    13670 > ~cartoon /6/3
    13671 
    13672 > display /6/3
    13673 
    13674 > ~cartoon trna
    13675 
    13676 > display trna
    13677 
    13678 > volume emmaps style surface step 1 level 3
    13679 
    13680 > surface dust emmaps size 2
    13681 
    13682 > volume emmaps surfaceSmoothing true
    13683 
    13684 > view dc3
    13685 
    13686 > hide models
    13687 
    13688 > show #30 models
    13689 
    13690 > select #30.3
    13691 
    13692 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    13693 
    13694 > hide #30.9 models
    13695 
    13696 > windowsize 1000 1000
    13697 
    13698 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    13699 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13700 
    13701 > hide models
    13702 
    13703 > show #31 models
    13704 
    13705 > select #31.3
    13706 
    13707 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    13708 
    13709 > hide #31.9 models
    13710 
    13711 > windowsize 1000 1000
    13712 
    13713 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    13714 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13715 
    13716 > hide models
    13717 
    13718 > show #32 models
    13719 
    13720 > select #32.3
    13721 
    13722 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    13723 
    13724 > hide #32.9 models
    13725 
    13726 > windowsize 1000 1000
    13727 
    13728 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    13729 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13730 
    13731 > hide models
    13732 
    13733 > show #12 models
    13734 
    13735 > select #12.3
    13736 
    13737 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    13738 
    13739 > windowsize 1000 1000
    13740 
    13741 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    13742 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13743 
    13744 > hide models
    13745 
    13746 > show #33 models
    13747 
    13748 > select #33.3
    13749 
    13750 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    13751 
    13752 > hide #33.9 models
    13753 
    13754 > windowsize 1000 1000
    13755 
    13756 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    13757 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13758 
    13759 > hide models
    13760 
    13761 > show #34 models
    13762 
    13763 > select #34.3
    13764 
    13765 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    13766 
    13767 > hide #34.9 models
    13768 
    13769 > windowsize 1000 1000
    13770 
    13771 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    13772 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13773 
    13774 > hide models
    13775 
    13776 > show #13 models
    13777 
    13778 > select #13.3
    13779 
    13780 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    13781 
    13782 > windowsize 1000 1000
    13783 
    13784 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    13785 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13786 
    13787 > hide models
    13788 
    13789 > show #14 models
    13790 
    13791 > ~display #14.3/w:38,49
    13792 
    13793 > select #14.3
    13794 
    13795 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    13796 
    13797 > windowsize 1000 1000
    13798 
    13799 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    13800 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13801 
    13802 > volume emmaps style surface step 1 level 8
    13803 
    13804 > surface dust emmaps size 2
    13805 
    13806 > volume emmaps surfaceSmoothing true
    13807 
    13808 > hide models
    13809 
    13810 > show #30.3,5,9 models
    13811 
    13812 > select #30.3
    13813 
    13814 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    13815 
    13816 > windowsize 1000 1000
    13817 
    13818 > save
    13819 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1a-FR.tif
    13820 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13821 
    13822 > hide models
    13823 
    13824 > show #31.3,5,9 models
    13825 
    13826 > select #31.3
    13827 
    13828 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    13829 
    13830 > windowsize 1000 1000
    13831 
    13832 > save
    13833 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1b-FR.tif
    13834 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13835 
    13836 > hide models
    13837 
    13838 > show #32.3,5,9 models
    13839 
    13840 > select #32.3
    13841 
    13842 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    13843 
    13844 > windowsize 1000 1000
    13845 
    13846 > save
    13847 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1c-FR.tif
    13848 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13849 
    13850 > hide models
    13851 
    13852 > show #33.3,5,9 models
    13853 
    13854 > select #33.3
    13855 
    13856 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    13857 
    13858 > windowsize 1000 1000
    13859 
    13860 > save
    13861 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysI1a-FR.tif
    13862 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    13863 
    13864 > hide models
    13865 
    13866 > show #34.3,5,9 models
    13867 
    13868 > select #34.3
    13869 
    13870 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    13871 
    13872 > windowsize 1000 1000
    13873 
    13874 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_I1bys-
    13875 > FR.tif format tiff width 1000 height 1000 supersample 20
    13876 > transparentBackground true
    13877 
    13878 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    13879 
    13880 ——— End of log from Thu Jun 15 13:56:32 2023 ———
    13881 
    13882 opened ChimeraX session 
    13883 
    13884 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    13885 
    13886 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    13887 
    13888 > name atomods #*.3|#*.5
    13889 
    13890 > name emmaps #*.1|#*.7|#*.8|#*.9
    13891 
    13892 > name lsu #*.5
    13893 
    13894 > name lsumap #*.8
    13895 
    13896 > name ssu #*.3
    13897 
    13898 > name ssumap #*.7
    13899 
    13900 > name ligmap #*.9
    13901 
    13902 > name rna /y,v,w,3,6,5
    13903 
    13904 > name r23s /3
    13905 
    13906 > name r16s /6
    13907 
    13908 > name r5s /5
    13909 
    13910 > name pt /y
    13911 
    13912 > name dt /v
    13913 
    13914 > name efg /x
    13915 
    13916 > name pep /p
    13917 
    13918 > name mrna /w
    13919 
    13920 > name GSP :GSP
    13921 
    13922 > name GDP :GDP
    13923 
    13924 > name GTP :GTP
    13925 
    13926 > name ntide :GTP|:GDP|:GSP
    13927 
    13928 > name spc :SCM
    13929 
    13930 > name fua :FUA
    13931 
    13932 > name par :PAR
    13933 
    13934 > name argb :LIG
    13935 
    13936 > name drugs argb|par|fua|spc
    13937 
    13938 > name D1 /x:start-293
    13939 
    13940 > name D2 /x:294-410
    13941 
    13942 > name D3 /x:411-489
    13943 
    13944 > name D4 /x:490-612
    13945 
    13946 > name D5 /x:613-end
    13947 
    13948 > name sw1 /x:38-65
    13949 
    13950 > name sw2 /x:89-108
    13951 
    13952 > name pl /x:18-25
    13953 
    13954 > name nkxd /x:142-146
    13955 
    13956 > name mg /x:MG
    13957 
    13958 > name trna /y,v
    13959 
    13960 > name anticodon /y,v:34-36
    13961 
    13962 > name antiplus /y,v:32-38
    13963 
    13964 > name cca /y,v:74-76
    13965 
    13966 > name astem /y,v:1-7,66-73
    13967 
    13968 > name darm /y,v:8-25
    13969 
    13970 > name aarm /y,v:26-43
    13971 
    13972 > name varm /y,v:44-48
    13973 
    13974 > name tarm /y,v:49-65
    13975 
    13976 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    13977 
    13978 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    13979 
    13980 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    13981 
    13982 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    13983 
    13984 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    13985 
    13986 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    13987 
    13988 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    13989 
    13990 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    13991 
    13992 > name h8 /6:144-178
    13993 
    13994 > name h14 /6:339-350
    13995 
    13996 > name h18 /6:511-540
    13997 
    13998 > name h23 /6:674-716
    13999 
    14000 > name h24 /6:769-810
    14001 
    14002 > name h27 /6:894-905
    14003 
    14004 > name h28 /6:921-937,1379-1400
    14005 
    14006 > name h29 /6:938-943,1337-1346
    14007 
    14008 > name h30 /6:945-955,1225-1235
    14009 
    14010 > name h31 /6:956-975
    14011 
    14012 > name h32 /6:984-990,1215-1221
    14013 
    14014 > name h34 /6:1045-1065,1188-1211
    14015 
    14016 > name h35 /6:1066-1073,1102-1110
    14017 
    14018 > name h36 /6:1074-1083
    14019 
    14020 > name h44 /6:1401-1502
    14021 
    14022 > name h45 /6:1506-1529
    14023 
    14024 > name aploop /6:956-959
    14025 
    14026 > name term16S /6:1503-end
    14027 
    14028 > name aphelix /6:1228-1230
    14029 
    14030 > name us3 #*.3/C
    14031 
    14032 > name us5 #*.3/E
    14033 
    14034 > name us7 #*.3/G
    14035 
    14036 > name us9 #*.3/I
    14037 
    14038 > name us11 #*.3/K
    14039 
    14040 > name us12 #*.3/L
    14041 
    14042 > name us13 #*.3/M
    14043 
    14044 > name us14 #*.3/N
    14045 
    14046 > name us15 #*.3/O
    14047 
    14048 > name us9-130 #*.3/I:130
    14049 
    14050 > name l1stalk /3:2097-2191
    14051 
    14052 > name srl /3:2652-2668
    14053 
    14054 > name H68 /3:1832-1906
    14055 
    14056 > name H69 /3:1907-1924
    14057 
    14058 > name H95 /3:2647-2673
    14059 
    14060 > name ul2 #*.5/B
    14061 
    14062 > name ul5 #*.5/E
    14063 
    14064 > name ul14 #*.5/N
    14065 
    14066 > name ul19 #*.5/S
    14067 
    14068 > name ul31 #*.5/e
    14069 
    14070 executed 70S_assign.cxc 
    14071 
    14072 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    14073 
    14074 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    14075 
    14076 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    14077 
    14078 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    14079 
    14080 > alias licorice car style protein modeh default arrows f xsect oval width 1
    14081 > thick 1;
    14082 
    14083 > dssp
    14084 
    14085 > windowsize 1000 1000
    14086 
    14087 > set bgColor white
    14088 
    14089 > lighting full
    14090 
    14091 > set silhouettes true
    14092 
    14093 > set silhouetteWidth 1.7
    14094 
    14095 > set silhouettes true
    14096 
    14097 > set silhouetteDepthJump 0.02
    14098 
    14099 > cartoon style width 2.5
    14100 
    14101 > size atomRadius 2
    14102 
    14103 Changed 1614330 atom radii 
    14104 
    14105 > nucleotides fill
    14106 
    14107 > size ions atomRadius 1.6
    14108 
    14109 Changed 31 atom radii 
    14110 
    14111 > size stickRadius 0.1
    14112 
    14113 Changed 1744812 bond radii 
    14114 
    14115 > style stick ringFill thin
    14116 
    14117 Changed 1614330 atom styles, 122200 residue ring styles 
    14118 
    14119 > show ribbons
    14120 
    14121 > hide H
    14122 
    14123 > hide :HOH
    14124 
    14125 > hide target a
    14126 
    14127 > show nucleic target a
    14128 
    14129 > show drugs target a
    14130 
    14131 > style drugs ball
    14132 
    14133 Changed 106 atom styles 
    14134 
    14135 > nucrib
    14136 
    14137 > graphics selection color black
    14138 
    14139 > volume emmaps style surface step 1 level 4
    14140 
    14141 > surface dust emmaps size 3
    14142 
    14143 > volume surfaceSmoothing true
    14144 
    14145 > cartoon tether trna shape cone opacity 1
    14146 
    14147 > dssp
    14148 
    14149 executed 70S_display.cxc 
    14150 
    14151 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    14152 
    14153 > color name efg-t 100,0,0,50
    14154 
    14155 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    14156 
    14157  
    14158 
    14159 > color name sw1-t 100,92,0,50
    14160 
    14161 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    14162 
    14163  
    14164 
    14165 > color name sw2-t 68,81,0,50
    14166 
    14167 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    14168 
    14169  
    14170 
    14171 > color name pl-t 23,59,0,50
    14172 
    14173 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    14174 
    14175  
    14176 
    14177 > color name d1-t 100,18,4,50
    14178 
    14179 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    14180 
    14181  
    14182 
    14183 > color name d2-t 100,40,4,50
    14184 
    14185 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    14186 
    14187  
    14188 
    14189 > color name d3-t 100,27,36,50
    14190 
    14191 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    14192 
    14193  
    14194 
    14195 > color name d4-t 80,0,23,50
    14196 
    14197 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    14198 
    14199  
    14200 
    14201 > color name d5-t 100,60,4,50
    14202 
    14203 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    14204 
    14205  
    14206 
    14207 > color name fa-t 100,90,4,50
    14208 
    14209 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    14210 
    14211  
    14212 
    14213 > color name gtp-t 45,53,60,50
    14214 
    14215 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    14216 
    14217  
    14218 
    14219 > color name mg-t 1,39,16,50
    14220 
    14221 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    14222 
    14223  
    14224 
    14225 > color name spc-t 100,0,0,50
    14226 
    14227 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    14228 
    14229  
    14230 
    14231 > color name argb-t 50,0,50,50
    14232 
    14233 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    14234 
    14235  
    14236 
    14237 > color name g-1t 98,42,30,50
    14238 
    14239 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    14240 
    14241  
    14242 
    14243 > color name g-2t 95,35,25,50
    14244 
    14245 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    14246 
    14247  
    14248 
    14249 > color name g-3t 92,28,20,50
    14250 
    14251 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    14252 
    14253  
    14254 
    14255 > color name g-4t 89,21,15,50
    14256 
    14257 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    14258 
    14259  
    14260 
    14261 > color name g-5t 86,14,10,50
    14262 
    14263 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    14264 
    14265  
    14266 
    14267 > color name g-6t 83,7,5,50
    14268 
    14269 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    14270 
    14271  
    14272 
    14273 > color name g-7t 80,0,0,50
    14274 
    14275 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    14276 
    14277  
    14278 
    14279 > color name p-t 40,60,2,50
    14280 
    14281 Color 'p-t' is 50% transparent: rgba(40%, 60%, 2%, 50%) hex: #66990580
    14282 
    14283  
    14284 
    14285 > color name p-c 40,60,2,100
    14286 
    14287 Color 'p-c' is opaque: rgb(40%, 60%, 2%) hex: #669905
    14288 
    14289  
    14290 
    14291 > color name p-1t 4,34,1,50
    14292 
    14293 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    14294 
    14295  
    14296 
    14297 > color name p-2t 12,39,1,50
    14298 
    14299 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    14300 
    14301  
    14302 
    14303 > color name p-3t 20,44,1,50
    14304 
    14305 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    14306 
    14307  
    14308 
    14309 > color name p-4t 28,49,1,50
    14310 
    14311 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    14312 
    14313  
    14314 
    14315 > color name p-5t 36,54,2,50
    14316 
    14317 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    14318 
    14319  
    14320 
    14321 > color name p-6t 44,59,2,50
    14322 
    14323 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    14324 
    14325  
    14326 
    14327 > color name p-7t 52,64,2,50
    14328 
    14329 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    14330 
    14331  
    14332 
    14333 > color name p-8t 60,69,2,50
    14334 
    14335 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    14336 
    14337  
    14338 
    14339 > color name p-9t 68,74,3,50
    14340 
    14341 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    14342 
    14343  
    14344 
    14345 > color name p-10t 76,79,3,50
    14346 
    14347 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    14348 
    14349  
    14350 
    14351 > color name p-11t 84,84,3,50
    14352 
    14353 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    14354 
    14355  
    14356 
    14357 > color name d-t 100,75,4,50
    14358 
    14359 Color 'd-t' is 50% transparent: rgba(100%, 75%, 4%, 50%) hex: #ffbf0a80
    14360 
    14361  
    14362 
    14363 > color name d-c 100,75,4,100
    14364 
    14365 Color 'd-c' is opaque: rgb(100%, 75%, 4%) hex: #ffbf0a
    14366 
    14367  
    14368 
    14369 > color name d-1t 100,100,4,50
    14370 
    14371 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    14372 
    14373  
    14374 
    14375 > color name d-2t 100,93,4,50
    14376 
    14377 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    14378 
    14379  
    14380 
    14381 > color name d-3t 100,86,4,50
    14382 
    14383 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    14384 
    14385  
    14386 
    14387 > color name d-4t 100,79,4,50
    14388 
    14389 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    14390 
    14391  
    14392 
    14393 > color name d-5t 100,72,4,50
    14394 
    14395 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    14396 
    14397  
    14398 
    14399 > color name d-6t 100,65,4,50
    14400 
    14401 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    14402 
    14403  
    14404 
    14405 > color name d-7t 100,58,4,50
    14406 
    14407 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    14408 
    14409  
    14410 
    14411 > color name d-8t 100,51,4,50
    14412 
    14413 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    14414 
    14415  
    14416 
    14417 > color name d-9t 100,44,4,50
    14418 
    14419 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    14420 
    14421  
    14422 
    14423 > color name d-10t 100,37,4,50
    14424 
    14425 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    14426 
    14427  
    14428 
    14429 > color name d-11t 100,30,4,50
    14430 
    14431 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    14432 
    14433  
    14434 
    14435 > color name m-t 95,43,62,50
    14436 
    14437 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    14438 
    14439  
    14440 
    14441 > color name m-c 95,43,62,100
    14442 
    14443 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    14444 
    14445  
    14446 
    14447 > color name m-1t 100,80,90,50
    14448 
    14449 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    14450 
    14451  
    14452 
    14453 > color name m-2t 98,76,87,50
    14454 
    14455 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    14456 
    14457  
    14458 
    14459 > color name m-3t 96,72,84,50
    14460 
    14461 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    14462 
    14463  
    14464 
    14465 > color name m-4t 94,68,81,50
    14466 
    14467 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    14468 
    14469  
    14470 
    14471 > color name m-5t 92,64,78,50
    14472 
    14473 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    14474 
    14475  
    14476 
    14477 > color name m-6t 90,60,75,50
    14478 
    14479 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    14480 
    14481  
    14482 
    14483 > color name m-7t 88,56,72,50
    14484 
    14485 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    14486 
    14487  
    14488 
    14489 > color name m-8t 86,52,69,50
    14490 
    14491 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    14492 
    14493  
    14494 
    14495 > color name m-9t 84,48,66,50
    14496 
    14497 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    14498 
    14499  
    14500 
    14501 > color name m-10t 82,44,63,50
    14502 
    14503 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    14504 
    14505  
    14506 
    14507 > color name m-11t 80,40,60,50
    14508 
    14509 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    14510 
    14511  
    14512 
    14513 > color name head-t 71,51,66,50
    14514 
    14515 Color 'head-t' is 50% transparent: rgba(71%, 51%, 66%, 50%) hex: #b582a880
    14516 
    14517  
    14518 
    14519 > color name head-c 89,89,100,100
    14520 
    14521 Color 'head-c' is opaque: rgb(89%, 89%, 100%) hex: #e3e3ff
    14522 
    14523  
    14524 
    14525 > color name headfa-t 80,79,100,50
    14526 
    14527 Color 'headfa-t' is 50% transparent: rgba(80%, 79%, 100%, 50%) hex: #ccc9ff80
    14528 
    14529  
    14530 
    14531 > color name headblue-t 59,78,94,50
    14532 
    14533 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    14534 
    14535  
    14536 
    14537 > color name headh1-t 41,64,100,50
    14538 
    14539 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    14540 
    14541  
    14542 
    14543 > color name headh2-t 50,70,100,50
    14544 
    14545 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    14546 
    14547  
    14548 
    14549 > color name headgray-t 60,60,60,50
    14550 
    14551 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    14552 
    14553  
    14554 
    14555 > color name darkhead-s 58,34,52,100
    14556 
    14557 Color 'darkhead-s' is opaque: rgb(58%, 34%, 52%) hex: #945785
    14558 
    14559  
    14560 
    14561 > color name bodywhite-t 90,90,90,50
    14562 
    14563 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    14564 #e6e6e680
    14565 
    14566  
    14567 
    14568 > color name rps-t 75,88,93,50
    14569 
    14570 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    14571 
    14572  
    14573 
    14574 > color name ssu-t 57,71,75,50
    14575 
    14576 Color 'ssu-t' is 50% transparent: rgba(57%, 71%, 75%, 50%) hex: #91b5bf80
    14577 
    14578  
    14579 
    14580 > color name h18-t 31,59,68,50
    14581 
    14582 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    14583 
    14584  
    14585 
    14586 > color name h18-c 31,59,68,100
    14587 
    14588 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    14589 
    14590  
    14591 
    14592 > color name h23-t 18,36,100,50
    14593 
    14594 Color 'h23-t' is 50% transparent: rgba(18%, 36%, 100%, 50%) hex: #2e5cff80
    14595 
    14596  
    14597 
    14598 > color name h23-c 18,36,100,100
    14599 
    14600 Color 'h23-c' is opaque: rgb(18%, 36%, 100%) hex: #2e5cff
    14601 
    14602  
    14603 
    14604 > color name h24-t 50,70,90,50
    14605 
    14606 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    14607 
    14608  
    14609 
    14610 > color name h24-c 50,70,90,100
    14611 
    14612 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    14613 
    14614  
    14615 
    14616 > color name h28-t 0,24,57,50
    14617 
    14618 Color 'h28-t' is 50% transparent: rgba(0%, 24%, 57%, 50%) hex: #003d9180
    14619 
    14620  
    14621 
    14622 > color name h28-c 0,24,57,100
    14623 
    14624 Color 'h28-c' is opaque: rgb(0%, 24%, 57%) hex: #003d91
    14625 
    14626  
    14627 
    14628 > color name h29-t 80,69,92,50
    14629 
    14630 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    14631 
    14632  
    14633 
    14634 > color name h29-c 80,69,92,100
    14635 
    14636 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    14637 
    14638  
    14639 
    14640 > color name h30-t 40,40,59,50
    14641 
    14642 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    14643 
    14644  
    14645 
    14646 > color name h30-c 40,40,59,100
    14647 
    14648 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    14649 
    14650  
    14651 
    14652 > color name h31-t 45,18,59,50
    14653 
    14654 Color 'h31-t' is 50% transparent: rgba(45%, 18%, 59%, 50%) hex: #732e9680
    14655 
    14656  
    14657 
    14658 > color name h31-c 45,18,59,100
    14659 
    14660 Color 'h31-c' is opaque: rgb(45%, 18%, 59%) hex: #732e96
    14661 
    14662  
    14663 
    14664 > color name h34-t 59,18,59,50
    14665 
    14666 Color 'h34-t' is 50% transparent: rgba(59%, 18%, 59%, 50%) hex: #962e9680
    14667 
    14668  
    14669 
    14670 > color name h34-c 59,18,59,100
    14671 
    14672 Color 'h34-c' is opaque: rgb(59%, 18%, 59%) hex: #962e96
    14673 
    14674  
    14675 
    14676 > color name h35-t 50,22,45,50
    14677 
    14678 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    14679 
    14680  
    14681 
    14682 > color name h35-c 50,22,45,100
    14683 
    14684 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    14685 
    14686  
    14687 
    14688 > color name h44-t 27,50,80,50
    14689 
    14690 Color 'h44-t' is 50% transparent: rgba(27%, 50%, 80%, 50%) hex: #4580cc80
    14691 
    14692  
    14693 
    14694 > color name h44-c 27,50,80,100
    14695 
    14696 Color 'h44-c' is opaque: rgb(27%, 50%, 80%) hex: #4580cc
    14697 
    14698  
    14699 
    14700 > color name aploop-t 27,0,50,50
    14701 
    14702 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    14703 
    14704  
    14705 
    14706 > color name term16-t 40,64,64,50
    14707 
    14708 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    14709 
    14710  
    14711 
    14712 > color name uS3-t 64,41,82,50
    14713 
    14714 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    14715 
    14716  
    14717 
    14718 > color name uS5-t 0,50,45,50
    14719 
    14720 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    14721 
    14722  
    14723 
    14724 > color name gray-t 70,70,70,50
    14725 
    14726 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    14727 
    14728  
    14729 
    14730 > color name hx68-t 50,50,50,50
    14731 
    14732 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    14733 
    14734  
    14735 
    14736 > color name hx68-c 50,50,50,100
    14737 
    14738 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    14739 
    14740  
    14741 
    14742 > color name hx69-t 40,40,40,50
    14743 
    14744 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    14745 
    14746  
    14747 
    14748 > color name hx69-c 40,40,40,100
    14749 
    14750 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    14751 
    14752  
    14753 
    14754 > color name srl-t 50,50,50,50
    14755 
    14756 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    14757 
    14758  
    14759 
    14760 > color name srl-t 50,50,50,100
    14761 
    14762 Color 'srl-t' is opaque: gray(50%) hex: #808080
    14763 
    14764  
    14765 
    14766 > color name lightgrayt 83,83,83,50
    14767 
    14768 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    14769 
    14770  
    14771 
    14772 > color name silvert 75,75,75,50
    14773 
    14774 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    14775 
    14776  
    14777 
    14778 > color name grayt 50,50,50,50
    14779 
    14780 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    14781 
    14782  
    14783 
    14784 > color name lightcyant 88,100,100,50
    14785 
    14786 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    14787 #e0ffff80
    14788 
    14789  
    14790 
    14791 > color name yellowt 100,90,0,50
    14792 
    14793 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    14794 
    14795  
    14796 
    14797 > color name deeppinkt 100,8,58,50
    14798 
    14799 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    14800 
    14801  
    14802 
    14803 > color name oranget 100,65,0,50
    14804 
    14805 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    14806 
    14807  
    14808 
    14809 > color name yellowgreent 60,80,20,50
    14810 
    14811 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    14812 #99cc3380
    14813 
    14814  
    14815 
    14816 > color name darkmagentat 54,0,54,50
    14817 
    14818 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    14819 #8a008a80
    14820 
    14821  
    14822 
    14823 > color name orchidt 86,44,84,50
    14824 
    14825 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    14826 
    14827  
    14828 
    14829 > color name paleturquoiset 69,93,93,50
    14830 
    14831 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    14832 #b0eded80
    14833 
    14834  
    14835 
    14836 > color name pinkt 100,75,80,50
    14837 
    14838 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    14839 
    14840  
    14841 
    14842 > color name darkgreent 0,39,0,50
    14843 
    14844 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    14845 
    14846  
    14847 
    14848 > color name limegreent 20,80,20,50
    14849 
    14850 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    14851 
    14852  
    14853 
    14854 > color name turquoiset 25,88,82,50
    14855 
    14856 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    14857 
    14858  
    14859 
    14860 > color name tealt 0,50,50,50
    14861 
    14862 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    14863 
    14864  
    14865 
    14866 > color name darkoranget 100,50,0,50
    14867 
    14868 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    14869 #ff800080
    14870 
    14871  
    14872 
    14873 > color name lightyellowt 100,100,50,50
    14874 
    14875 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    14876 #ffff8080
    14877 
    14878  
    14879 
    14880 > color name goldt 100,75,0,50
    14881 
    14882 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    14883 
    14884  
    14885 
    14886 > color name plumt 87,63,87,50
    14887 
    14888 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    14889 
    14890  
    14891 
    14892 > color name ssubluet 68,86,90,50
    14893 
    14894 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    14895 
    14896  
    14897 
    14898 > color name p-prect 10,41,0,50
    14899 
    14900 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    14901 
    14902  
    14903 
    14904 > color name p-h2t 23,59,0,50
    14905 
    14906 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    14907 
    14908  
    14909 
    14910 > color name p-h1t 40,73,0,50
    14911 
    14912 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    14913 
    14914  
    14915 
    14916 > color name p-h1c 40,73,0,100
    14917 
    14918 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    14919 
    14920  
    14921 
    14922 > color name p-spct 68,81,0,50
    14923 
    14924 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    14925 
    14926  
    14927 
    14928 > color name p-spcc 68,81,0,100
    14929 
    14930 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    14931 
    14932  
    14933 
    14934 > color name p-fat 82,92,0,50
    14935 
    14936 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    14937 
    14938  
    14939 
    14940 > color name p-postt 100,92,0,50
    14941 
    14942 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    14943 
    14944  
    14945 
    14946 > color name d-t 100,80,4,50
    14947 
    14948 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    14949 
    14950  
    14951 
    14952 > color name d-prect 95,100,50,50
    14953 
    14954 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    14955 
    14956  
    14957 
    14958 > color name d-h2t 100,90,4,50
    14959 
    14960 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    14961 
    14962  
    14963 
    14964 > color name d-h1t 100,80,4,50
    14965 
    14966 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    14967 
    14968  
    14969 
    14970 > color name d-spct 100,70,4,50
    14971 
    14972 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    14973 
    14974  
    14975 
    14976 > color name d-fat 100,55,4,50
    14977 
    14978 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    14979 
    14980  
    14981 
    14982 > color name d-fac 100,55,4,100
    14983 
    14984 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    14985 
    14986  
    14987 
    14988 > color name d-postt 100,40,4,50
    14989 
    14990 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    14991 
    14992  
    14993 
    14994 > color name m-t 95,43,62,50
    14995 
    14996 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    14997 
    14998  
    14999 
    15000 > color name m-prect 100,85,95,50
    15001 
    15002 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    15003 
    15004  
    15005 
    15006 > color name m-h2t 100,85,95,50
    15007 
    15008 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    15009 
    15010  
    15011 
    15012 > color name m-h1t 100,75,95,50
    15013 
    15014 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    15015 
    15016  
    15017 
    15018 > color name m-spct 89,63,75,50
    15019 
    15020 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    15021 
    15022  
    15023 
    15024 > color name m-fat 95,51,75,50
    15025 
    15026 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    15027 
    15028  
    15029 
    15030 > color name m-fac 95,51,75,100
    15031 
    15032 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    15033 
    15034  
    15035 
    15036 > color name m-postt 95,43,62,50
    15037 
    15038 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    15039 
    15040  
    15041 executed 70S_colors.cxc 
    15042 
    15043 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    15044 
    15045 > color 100,100,100,50
    15046 
    15047 > color lsu silvert
    15048 
    15049 > color /3 lightgrayt
    15050 
    15051 > color /5 lightgrayt
    15052 
    15053 > color ssu ssu-t
    15054 
    15055 > color head head-t
    15056 
    15057 > color efg efg-t
    15058 
    15059 > color dt d-t
    15060 
    15061 > color pt p-t
    15062 
    15063 > color pep p-t
    15064 
    15065 > color mrna m-t
    15066 
    15067 executed 70S_colorstandard.cxc 
    15068 
    15069 > windowsize 1000 1000
    15070 
    15071 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    15072 
    15073 > color h18 h18-t
    15074 
    15075 > color h23 h23-t
    15076 
    15077 > color h24 h24-t
    15078 
    15079 > color h28 h28-t
    15080 
    15081 > color h29 h29-t
    15082 
    15083 > color h30 h30-t
    15084 
    15085 > color h31 h31-t
    15086 
    15087 > color h34 h34-t
    15088 
    15089 > color h35 h35-t
    15090 
    15091 > color h36 h36-t
    15092 
    15093 > color h44 h44-t
    15094 
    15095 > color H69 hx69-t
    15096 
    15097 executed 70S_color_helices.cxc 
    15098 
    15099 > color h30|h36|h35 head-t
    15100 
    15101 > view dc3
    15102 
    15103 > surface cap true
    15104 
    15105 > color zone #12.1 near #12.3,5 distance 5
    15106 
    15107 > color zone #13.1 near #13.3,5 distance 5
    15108 
    15109 > color zone #14.1 near #14.3,5 distance 5
    15110 
    15111 > color zone #30.1 near #30.3,5 distance 5
    15112 
    15113 > color zone #31.1 near #31.3,5 distance 5
    15114 
    15115 > color zone #32.1 near #32.3,5 distance 5
    15116 
    15117 > color zone #33.1 near #33.3,5 distance 5
    15118 
    15119 > color zone #34.1 near #34.3,5 distance 5
    15120 
    15121 > color zone #30.9 near #30.3,5 distance 5
    15122 
    15123 > color zone #31.9 near #31.3,5 distance 5
    15124 
    15125 > color zone #32.9 near #32.3,5 distance 5
    15126 
    15127 > color zone #33.9 near #33.3,5 distance 5
    15128 
    15129 > color zone #34.9 near #34.3,5 distance 5
    15130 
    15131 > color h30|h36|h35 head-c
    15132 
    15133 > color h28 h28-c
    15134 
    15135 > color h29 h29-c
    15136 
    15137 > color h34 h34-c
    15138 
    15139 > color h23 h23-c
    15140 
    15141 > color h24 h24-c
    15142 
    15143 > color h31 h31-c
    15144 
    15145 > hide #!100
    15146 
    15147 > hide #101 models
    15148 
    15149 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    15150 
    15151 > transparency #*.3 0 target abc
    15152 
    15153 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    15154 
    15155 > color h18 h18-c
    15156 
    15157 > color h23 h23-c
    15158 
    15159 > color h24 h24-c
    15160 
    15161 > color h28 h28-c
    15162 
    15163 > color h29 h29-c
    15164 
    15165 > color h30 h30-c
    15166 
    15167 > color h31 h31-c
    15168 
    15169 > color h34 h34-c
    15170 
    15171 > color h35 h35-c
    15172 
    15173 > color h44 h44-c
    15174 
    15175 > color H69 hx69-c
    15176 
    15177 executed 70S_color_helices-s.cxc 
    15178 
    15179 > color /v d-c
    15180 
    15181 > color /y p-c
    15182 
    15183 > color /w m-c
    15184 
    15185 executed gtpys_dc.cxc 
    15186 
    15187 > surface cap true
    15188 
    15189 > lighting gentle
    15190 
    15191 > lighting intensity .2
    15192 
    15193 > size stickRadius 0.17
    15194 
    15195 Changed 1744812 bond radii 
    15196 
    15197 > nucribthin
    15198 
    15199 > style ringFill thin
    15200 
    15201 Changed 122200 residue ring styles 
    15202 
    15203 > graphics silhouettes true color black
    15204 
    15205 > ~select
    15206 
    15207 Nothing selected 
    15208 
    15209 > ~select
    15210 
    15211 Nothing selected 
    15212 
    15213 > ~ribbon
    15214 
    15215 > ~display
    15216 
    15217 > ribbon
    15218 
    15219 > ~ribbon mrna
    15220 
    15221 > display mrna
    15222 
    15223 > display antiplus
    15224 
    15225 > display /x:505-514,584
    15226 
    15227 > display /6:1492,1493,530,532,1054,1400,1397
    15228 
    15229 > display /3:1913
    15230 
    15231 > display #*.3/L:44
    15232 
    15233 > hide models
    15234 
    15235 > show #31.3,5 models
    15236 
    15237 > view dc1
    15238 
    15239 > windowsize 1000 1000
    15240 
    15241 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    15242 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15243 
    15244 > view dc2
    15245 
    15246 > windowsize 1000 1000
    15247 
    15248 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    15249 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15250 
    15251 > hide models
    15252 
    15253 > show #32.3,5 models
    15254 
    15255 > windowsize 1000 1000
    15256 
    15257 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    15258 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15259 
    15260 > view dc2
    15261 
    15262 > windowsize 1000 1000
    15263 
    15264 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    15265 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15266 
    15267 > hide models
    15268 
    15269 > show #12.3,5 models
    15270 
    15271 > view dc1
    15272 
    15273 > windowsize 1000 1000
    15274 
    15275 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    15276 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15277 
    15278 > view dc2
    15279 
    15280 > windowsize 1000 1000
    15281 
    15282 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    15283 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15284 
    15285 > hide models
    15286 
    15287 > show #33.3,5 models
    15288 
    15289 > view dc1
    15290 
    15291 > windowsize 1000 1000
    15292 
    15293 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    15294 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15295 
    15296 > view dc2
    15297 
    15298 > windowsize 1000 1000
    15299 
    15300 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    15301 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15302 
    15303 > hide models
    15304 
    15305 > show #34.3,5 models
    15306 
    15307 > view dc1
    15308 
    15309 > windowsize 1000 1000
    15310 
    15311 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    15312 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15313 
    15314 > view dc2
    15315 
    15316 > windowsize 1000 1000
    15317 
    15318 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    15319 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15320 
    15321 > hide models
    15322 
    15323 > show #13.3,5 models
    15324 
    15325 > view dc1
    15326 
    15327 > windowsize 1000 1000
    15328 
    15329 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    15330 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15331 
    15332 > view dc2
    15333 
    15334 > windowsize 1000 1000
    15335 
    15336 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    15337 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15338 
    15339 > hide models
    15340 
    15341 > show #14.3,5 models
    15342 
    15343 > ~display #14.3/w:38,49
    15344 
    15345 > view dc1
    15346 
    15347 > windowsize 1000 1000
    15348 
    15349 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    15350 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15351 
    15352 > view dc2
    15353 
    15354 > windowsize 1000 1000
    15355 
    15356 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    15357 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15358 
    15359 > graphics silhouettes true color 25,25,25,15
    15360 
    15361 > style ringFill thick
    15362 
    15363 Changed 122200 residue ring styles 
    15364 
    15365 > ~cartoon /6/3
    15366 
    15367 > display /6/3
    15368 
    15369 > ~cartoon trna
    15370 
    15371 > display trna
    15372 
    15373 > volume emmaps style surface step 1 level 3
    15374 
    15375 > surface dust emmaps size 2
    15376 
    15377 > volume emmaps surfaceSmoothing true
    15378 
    15379 > view dc3
    15380 
    15381 > hide models
    15382 
    15383 > show #30 models
    15384 
    15385 > select #30.3
    15386 
    15387 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    15388 
    15389 > hide #30.9 models
    15390 
    15391 > windowsize 1000 1000
    15392 
    15393 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    15394 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15395 
    15396 > hide models
    15397 
    15398 > show #31 models
    15399 
    15400 > select #31.3
    15401 
    15402 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    15403 
    15404 > hide #31.9 models
    15405 
    15406 > windowsize 1000 1000
    15407 
    15408 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    15409 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15410 
    15411 > hide models
    15412 
    15413 > show #32 models
    15414 
    15415 > select #32.3
    15416 
    15417 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    15418 
    15419 > hide #32.9 models
    15420 
    15421 > windowsize 1000 1000
    15422 
    15423 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    15424 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15425 
    15426 > hide models
    15427 
    15428 > show #12 models
    15429 
    15430 > select #12.3
    15431 
    15432 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    15433 
    15434 > windowsize 1000 1000
    15435 
    15436 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    15437 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15438 
    15439 > hide models
    15440 
    15441 > show #33 models
    15442 
    15443 > select #33.3
    15444 
    15445 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    15446 
    15447 > hide #33.9 models
    15448 
    15449 > windowsize 1000 1000
    15450 
    15451 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    15452 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15453 
    15454 > hide models
    15455 
    15456 > show #34 models
    15457 
    15458 > select #34.3
    15459 
    15460 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    15461 
    15462 > hide #34.9 models
    15463 
    15464 > windowsize 1000 1000
    15465 
    15466 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    15467 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15468 
    15469 > hide models
    15470 
    15471 > show #13 models
    15472 
    15473 > select #13.3
    15474 
    15475 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    15476 
    15477 > windowsize 1000 1000
    15478 
    15479 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    15480 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15481 
    15482 > hide models
    15483 
    15484 > show #14 models
    15485 
    15486 > ~display #14.3/w:38,49
    15487 
    15488 > select #14.3
    15489 
    15490 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    15491 
    15492 > windowsize 1000 1000
    15493 
    15494 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    15495 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15496 
    15497 > volume emmaps style surface step 1 level 8
    15498 
    15499 > surface dust emmaps size 2
    15500 
    15501 > volume emmaps surfaceSmoothing true
    15502 
    15503 > hide models
    15504 
    15505 > show #30.3,5,9 models
    15506 
    15507 > select #30.3
    15508 
    15509 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    15510 
    15511 > windowsize 1000 1000
    15512 
    15513 > save
    15514 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1a-FR.tif
    15515 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15516 
    15517 > hide models
    15518 
    15519 > show #31.3,5,9 models
    15520 
    15521 > select #31.3
    15522 
    15523 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    15524 
    15525 > windowsize 1000 1000
    15526 
    15527 > save
    15528 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1b-FR.tif
    15529 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15530 
    15531 > hide models
    15532 
    15533 > show #32.3,5,9 models
    15534 
    15535 > select #32.3
    15536 
    15537 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    15538 
    15539 > windowsize 1000 1000
    15540 
    15541 > save
    15542 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1c-FR.tif
    15543 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15544 
    15545 > hide models
    15546 
    15547 > show #33.3,5,9 models
    15548 
    15549 > select #33.3
    15550 
    15551 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    15552 
    15553 > windowsize 1000 1000
    15554 
    15555 > save
    15556 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysI1a-FR.tif
    15557 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    15558 
    15559 > hide models
    15560 
    15561 > show #34.3,5,9 models
    15562 
    15563 > select #34.3
    15564 
    15565 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    15566 
    15567 > windowsize 1000 1000
    15568 
    15569 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_I1bys-
    15570 > FR.tif format tiff width 1000 height 1000 supersample 20
    15571 > transparentBackground true
    15572 
    15573 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    15574 
    15575 ——— End of log from Thu Jun 15 17:34:19 2023 ———
    15576 
    15577 opened ChimeraX session 
    15578 
    15579 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    15580 
    15581 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    15582 
    15583 > name atomods #*.3|#*.5
    15584 
    15585 > name emmaps #*.1|#*.7|#*.8|#*.9
    15586 
    15587 > name lsu #*.5
    15588 
    15589 > name lsumap #*.8
    15590 
    15591 > name ssu #*.3
    15592 
    15593 > name ssumap #*.7
    15594 
    15595 > name ligmap #*.9
    15596 
    15597 > name rna /y,v,w,3,6,5
    15598 
    15599 > name r23s /3
    15600 
    15601 > name r16s /6
    15602 
    15603 > name r5s /5
    15604 
    15605 > name pt /y
    15606 
    15607 > name dt /v
    15608 
    15609 > name efg /x
    15610 
    15611 > name pep /p
    15612 
    15613 > name mrna /w
    15614 
    15615 > name GSP :GSP
    15616 
    15617 > name GDP :GDP
    15618 
    15619 > name GTP :GTP
    15620 
    15621 > name ntide :GTP|:GDP|:GSP
    15622 
    15623 > name spc :SCM
    15624 
    15625 > name fua :FUA
    15626 
    15627 > name par :PAR
    15628 
    15629 > name argb :LIG
    15630 
    15631 > name drugs argb|par|fua|spc
    15632 
    15633 > name D1 /x:start-293
    15634 
    15635 > name D2 /x:294-410
    15636 
    15637 > name D3 /x:411-489
    15638 
    15639 > name D4 /x:490-612
    15640 
    15641 > name D5 /x:613-end
    15642 
    15643 > name sw1 /x:38-65
    15644 
    15645 > name sw2 /x:89-108
    15646 
    15647 > name pl /x:18-25
    15648 
    15649 > name nkxd /x:142-146
    15650 
    15651 > name mg /x:MG
    15652 
    15653 > name trna /y,v
    15654 
    15655 > name anticodon /y,v:34-36
    15656 
    15657 > name antiplus /y,v:32-38
    15658 
    15659 > name cca /y,v:74-76
    15660 
    15661 > name astem /y,v:1-7,66-73
    15662 
    15663 > name darm /y,v:8-25
    15664 
    15665 > name aarm /y,v:26-43
    15666 
    15667 > name varm /y,v:44-48
    15668 
    15669 > name tarm /y,v:49-65
    15670 
    15671 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    15672 
    15673 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    15674 
    15675 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    15676 
    15677 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    15678 
    15679 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    15680 
    15681 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    15682 
    15683 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    15684 
    15685 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    15686 
    15687 > name aploop /6:956-959
    15688 
    15689 > name term16S /6:1503-end
    15690 
    15691 > name aphelix /6:1228-1230
    15692 
    15693 > name us2 #*.3/B
    15694 
    15695 > name us3 #*.3/C
    15696 
    15697 > name us4 #*.3/D
    15698 
    15699 > name us5 #*.3/E
    15700 
    15701 > name us6 #*.3/F
    15702 
    15703 > name us7 #*.3/G
    15704 
    15705 > name us8 #*.3/H
    15706 
    15707 > name us9 #*.3/I
    15708 
    15709 > name us10 #*.3/J
    15710 
    15711 > name us11 #*.3/K
    15712 
    15713 > name us12 #*.3/L
    15714 
    15715 > name us13 #*.3/M
    15716 
    15717 > name us14 #*.3/N
    15718 
    15719 > name us15 #*.3/O
    15720 
    15721 > name us16 #*.3/P
    15722 
    15723 > name us17 #*.3/Q
    15724 
    15725 > name us18 #*.3/R
    15726 
    15727 > name us19 #*.3/S
    15728 
    15729 > name us20 #*.3/T
    15730 
    15731 > name us21 #*.3/U
    15732 
    15733 > name us9-130 #*.3/I:130
    15734 
    15735 > name l1stalk /3:2097-2191
    15736 
    15737 > name srl /3:2652-2668
    15738 
    15739 > name asf /3:863-910
    15740 
    15741 > name l1stalk /3:2094-2195
    15742 
    15743 > name ul1 #*.5/A
    15744 
    15745 > name ul2 #*.5/B
    15746 
    15747 > name ul3 #*.5/C
    15748 
    15749 > name ul4 #*.5/D
    15750 
    15751 > name ul5 #*.5/E
    15752 
    15753 > name ul6 #*.5/F
    15754 
    15755 > name ul7 #*.5/G
    15756 
    15757 > name ul9 #*.5/I
    15758 
    15759 > name ul10 #*.5/J
    15760 
    15761 > name ul11 #*.5/K
    15762 
    15763 > name ul13 #*.5/M
    15764 
    15765 > name ul14 #*.5/N
    15766 
    15767 > name ul15 #*.5/O
    15768 
    15769 > name ul16 #*.5/P
    15770 
    15771 > name ul17 #*.5/Q
    15772 
    15773 > name ul18 #*.5/R
    15774 
    15775 > name ul19 #*.5/S
    15776 
    15777 > name ul20 #*.5/T
    15778 
    15779 > name ul21 #*.5/U
    15780 
    15781 > name ul22 #*.5/V
    15782 
    15783 > name ul23 #*.5/W
    15784 
    15785 > name ul24 #*.5/X
    15786 
    15787 > name ul25 #*.5/Y
    15788 
    15789 > name ul27 #*.5/a
    15790 
    15791 > name ul28 #*.5/b
    15792 
    15793 > name ul29 #*.5/c
    15794 
    15795 > name ul30 #*.5/d
    15796 
    15797 > name ul31 #*.5/e
    15798 
    15799 > name ul32 #*.5/f
    15800 
    15801 > name ul33 #*.5/g
    15802 
    15803 > name ul34 #*.5/h
    15804 
    15805 > name ul35 #*.5/i
    15806 
    15807 > name ul36 #*.5/j
    15808 
    15809 > name h1 #*.3/6:9-13|#*.3/6:21-25
    15810 
    15811 > name h2 #*.3/6:17-19|#*.3/6:916-918
    15812 
    15813 > name h3 #*.3/6:27-37|#*.3/6:547-556
    15814 
    15815 > name h4 #*.3/6:39-46|#*.3/6:395-403
    15816 
    15817 > name h5 #*.3/6:47-58|#*.3/6:354-360
    15818 
    15819 > name h6 #*.3/6:61-106
    15820 
    15821 > name h7 #*.3/6:122-142|#*.3/6:221-239
    15822 
    15823 > name h8 #*.3/6:144-178
    15824 
    15825 > name h9 #*.3/6:184-193
    15826 
    15827 > name h10 #*.3/6:198-219
    15828 
    15829 > name h11 #*.3/6:240-286
    15830 
    15831 > name h12 #*.3/6:289-311
    15832 
    15833 > name h13 #*.3/6:316-337
    15834 
    15835 > name h14 #*.3/6:339-350
    15836 
    15837 > name h15 #*.3/6:367-393
    15838 
    15839 > name h16 #*.3/6:406-436
    15840 
    15841 > name h17 #*.3/6:437-497
    15842 
    15843 > name h18 #*.3/6:500-545
    15844 
    15845 > name h19 #*.3/6:567-569|#*.3/6:881-88
    15846 
    15847 > name h20 #*.3/6:577-586|#*.3/6:755-76
    15848 
    15849 > name h21 #*.3/6:588-651
    15850 
    15851 > name h22 #*.3/6:654-672|#*.3/6:734-75
    15852 
    15853 > name h23 #*.3/6:673-733
    15854 
    15855 > name h24 #*.3/6:769-810
    15856 
    15857 > name h25 #*.3/6:821-827|#*.3/6:873-87
    15858 
    15859 > name h26 #*.3/6:829-857
    15860 
    15861 > name h26a #*.3/6:861-868
    15862 
    15863 > name h27 #*.3/6:885-912
    15864 
    15865 > name h28 #*.3/6:921-937|#*.3/6:1379-1400
    15866 
    15867 > name h29 #*.3/6:938-943|#*.3/6:1337-1346
    15868 
    15869 > name h30 #*.3/6:945-955|#*.3/6:1225-1236
    15870 
    15871 > name h31 #*.3/6:956-975
    15872 
    15873 > name h32 #*.3/6:984-990|#*.3/6:1215-1221
    15874 
    15875 > name h33 #*.3/6:996-1045
    15876 
    15877 > name h34 #*.3/6:1045-1065|#*.3/6:1188-1211
    15878 
    15879 > name h35 #*.3/6:1066-1073|#*.3/6:1102-1110
    15880 
    15881 > name h36 #*.3/6:1074-1083
    15882 
    15883 > name h37 #*.3/6:1086-1099
    15884 
    15885 > name h38 #*.3/6:1113-1117|#*.3/6:1183-1187
    15886 
    15887 > name h39 #*.3/6:1118-1155
    15888 
    15889 > name h40 #*.3/6:1161-1175
    15890 
    15891 > name h41 #*.3/6:1241-1296
    15892 
    15893 > name h42 #*.3/6:1303-1334
    15894 
    15895 > name h43 #*.3/6:1350-1372
    15896 
    15897 > name h44 #*.3/6:1401-1502
    15898 
    15899 > name h45 #*.3/6:1506-1529
    15900 
    15901 > name H1 #*.5/3:1-8|#*.5/3:2895-2904
    15902 
    15903 > name H2 #*.5/3:15-24|#*.5/3:516-525
    15904 
    15905 > name H3 #*.5/3:31-32|#*.5/3:473-474
    15906 
    15907 > name H4 #*.5/3:35-45|#*.5/3:433-445
    15908 
    15909 > name H5 #*.5/3:54-57|#*.5/3:114-117
    15910 
    15911 > name H6 #*.5/3:58-69
    15912 
    15913 > name H7 #*.5/3:75-110
    15914 
    15915 > name H8 #*.5/3:121-130
    15916 
    15917 > name H9 #*.5/3:131-148
    15918 
    15919 > name H10 #*.5/3:150-176
    15920 
    15921 > name H11 #*.5/3:183-213
    15922 
    15923 > name H12 #*.5/3:224-231
    15924 
    15925 > name H13 #*.5/3:235-262
    15926 
    15927 > name H14 #*.5/3:265-268|#*.5/3:424-427
    15928 
    15929 > name H16 #*.5/3:271-274|#*.5/3:363-366
    15930 
    15931 > name H18 #*.5/3:281-297|#*.5/3:341-359
    15932 
    15933 > name H19 #*.5/3:301-316
    15934 
    15935 > name H20 #*.5/3:325-337
    15936 
    15937 > name H21 #*.5/3:375-399
    15938 
    15939 > name H22 #*.5/3:406-421
    15940 
    15941 > name H23 #*.5/3:461-468
    15942 
    15943 > name H24 #*.5/3:484-496
    15944 
    15945 > name H25 #*.5/3:533-560
    15946 
    15947 > name H26 #*.5/3:579-584|#*.5/3:1256-1261
    15948 
    15949 > name H27 #*.5/3:589-601|#*.5/3:656-668
    15950 
    15951 > name H28 #*.5/3:604-624
    15952 
    15953 > name H29 #*.5/3:628-635
    15954 
    15955 > name H31 #*.5/3:637-651
    15956 
    15957 > name H32 #*.5/3:678-683|#*.5/3:794-799
    15958 
    15959 > name H33 #*.5/3:687-698|#*.5/3:763-775
    15960 
    15961 > name H34 #*.5/3:700-732
    15962 
    15963 > name H35 #*.5/3:736-760
    15964 
    15965 > name H35a #*.5/3:777-787
    15966 
    15967 > name H36 #*.5/3:812-817|#*.5/3:1190-1195
    15968 
    15969 > name H37 #*.5/3:822-835
    15970 
    15971 > name H38 #*.5/3:838-940
    15972 
    15973 > name H39 #*.5/3:946-971
    15974 
    15975 > name H40 #*.5/3:976-987
    15976 
    15977 > name H41 #*.5/3:991-1018|#*.5/3:1144-1163
    15978 
    15979 > name H42 #*.5/3:1030-1055|#*.5/3:1104-1124
    15980 
    15981 > name H43 #*.5/3:1057-1081
    15982 
    15983 > name H44 #*.5/3:1087-1102
    15984 
    15985 > name H45 #*.5/3:1164-1185
    15986 
    15987 > name H46 #*.5/3:1198-1247
    15988 
    15989 > name H47 #*.5/3:1276-1294
    15990 
    15991 > name H48 #*.5/3:1295-1298|#*.5/3:1642-1646
    15992 
    15993 > name H49 #*.5/3:1303-1306|#*.5/3:1622-1625
    15994 
    15995 > name H50 #*.5/3:1314-1338
    15996 
    15997 > name H51 #*.5/3:1345-1348|#*.5/3:1598-1601
    15998 
    15999 > name H52 #*.5/3:1350-1381
    16000 
    16001 > name H53 #*.5/3:1385-1402
    16002 
    16003 > name H54 #*.5/3:1405-1417|#*.5/3:1581-1597
    16004 
    16005 > name H55 #*.5/3:1420-1424|#*.5/3:1573-1578
    16006 
    16007 > name H56 #*.5/3:1429-1444|#*.5/3:1547-1564
    16008 
    16009 > name H57 #*.5/3:1445-1466
    16010 
    16011 > name H58 #*.5/3:1467-1525
    16012 
    16013 > name H59 #*.5/3:1527-1544
    16014 
    16015 > name H60 #*.5/3:1627-1639
    16016 
    16017 > name H61 #*.5/3:1647-1669|#*.5/3:1991-2009
    16018 
    16019 > name H62 #*.5/3:1682-1706
    16020 
    16021 > name H63 #*.5/3:1707-1751
    16022 
    16023 > name H64 #*.5/3:1764-1772|#*.5/3:1979-1988
    16024 
    16025 > name H65 #*.5/3:1775-1789
    16026 
    16027 > name H66 #*.5/3:1792-1827
    16028 
    16029 > name H67 #*.5/3:1830-1833|#*.5/3:1972-1975
    16030 
    16031 > name H68 #*.5/3:1835-1905
    16032 
    16033 > name H69 #*.5/3:1906-1924
    16034 
    16035 > name H71 #*.5/3:1945-1960
    16036 
    16037 > name H72 #*.5/3:2023-2040
    16038 
    16039 > name H73 #*.5/3:2043-2057|#*.5/3:2611-2625
    16040 
    16041 > name H74 #*.5/3:2064-2075|#*.5/3:2434-2446
    16042 
    16043 > name H75 #*.5/3:2077-2090|#*.5/3:2229-2243
    16044 
    16045 > name H76 #*.5/3:2093-2110|#*.5/3:2179-2196
    16046 
    16047 > name H77 #*.5/3:2120-2124|#*.5/3:2174-2178
    16048 
    16049 > name H78 #*.5/3:2127-2161
    16050 
    16051 > name H79 #*.5/3:2200-2223
    16052 
    16053 > name H80 #*.5/3:2246-2258
    16054 
    16055 > name H81 #*.5/3:2259-2281
    16056 
    16057 > name H82 #*.5/3:2284-2285|#*.5/3:2383-2384
    16058 
    16059 > name H83 #*.5/3:2288-2295|#*.5/3:2337-2344
    16060 
    16061 > name H84 #*.5/3:2296-2322
    16062 
    16063 > name H85 #*.5/3:2323-2332
    16064 
    16065 > name H86 #*.5/3:2347-2370
    16066 
    16067 > name H87 #*.5/3:2372-2381
    16068 
    16069 > name H88 #*.5/3:2395-2421
    16070 
    16071 > name H89 #*.5/3:2453-2498
    16072 
    16073 > name H90 #*.5/3:2507-2517|#*.5/3:2567-2582
    16074 
    16075 > name H91 #*.5/3:2520-2545
    16076 
    16077 > name H92 #*.5/3:2547-2561
    16078 
    16079 > name H93 #*.5/3:2588-2606
    16080 
    16081 > name H94 #*.5/3:2630-2643|#*.5/3:2771-2788
    16082 
    16083 > name H95 #*.5/3:2646-2674
    16084 
    16085 > name H96 #*.5/3:2675-2732
    16086 
    16087 > name H97 #*.5/3:2735-2769
    16088 
    16089 > name H98 #*.5/3:2791-2805
    16090 
    16091 > name H99 #*.5/3:2811-2814|#*.5/3:2886-2889
    16092 
    16093 > name H100 #*.5/3:2815-2831
    16094 
    16095 executed 70S_assign.cxc 
    16096 
    16097 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    16098 
    16099 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    16100 
    16101 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    16102 
    16103 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    16104 
    16105 > alias licorice car style protein modeh default arrows f xsect oval width 1
    16106 > thick 1;
    16107 
    16108 > dssp
    16109 
    16110 > windowsize 1000 1000
    16111 
    16112 > set bgColor white
    16113 
    16114 > lighting full
    16115 
    16116 > set silhouettes true
    16117 
    16118 > set silhouetteWidth 1.7
    16119 
    16120 > set silhouettes true
    16121 
    16122 > set silhouetteDepthJump 0.02
    16123 
    16124 > cartoon style width 2.5
    16125 
    16126 > size atomRadius 2
    16127 
    16128 Changed 1614330 atom radii 
    16129 
    16130 > nucleotides fill
    16131 
    16132 > size ions atomRadius 1.6
    16133 
    16134 Changed 31 atom radii 
    16135 
    16136 > size stickRadius 0.1
    16137 
    16138 Changed 1744812 bond radii 
    16139 
    16140 > style stick ringFill thin
    16141 
    16142 Changed 1614330 atom styles, 122200 residue ring styles 
    16143 
    16144 > show ribbons
    16145 
    16146 > hide H
    16147 
    16148 > hide :HOH
    16149 
    16150 > hide target a
    16151 
    16152 > show nucleic target a
    16153 
    16154 > show drugs target a
    16155 
    16156 > style drugs ball
    16157 
    16158 Changed 106 atom styles 
    16159 
    16160 > nucrib
    16161 
    16162 > graphics selection color black
    16163 
    16164 > volume emmaps style surface step 1 level 4
    16165 
    16166 > surface dust emmaps size 3
    16167 
    16168 > volume surfaceSmoothing true
    16169 
    16170 > cartoon tether trna shape cone opacity 1
    16171 
    16172 > dssp
    16173 
    16174 executed 70S_display.cxc 
    16175 
    16176 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    16177 
    16178 > color name efg-t 100,0,0,50
    16179 
    16180 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    16181 
    16182  
    16183 
    16184 > color name sw1-t 100,92,0,50
    16185 
    16186 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    16187 
    16188  
    16189 
    16190 > color name sw2-t 68,81,0,50
    16191 
    16192 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    16193 
    16194  
    16195 
    16196 > color name pl-t 23,59,0,50
    16197 
    16198 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    16199 
    16200  
    16201 
    16202 > color name d1-t 100,18,4,50
    16203 
    16204 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    16205 
    16206  
    16207 
    16208 > color name d2-t 100,40,4,50
    16209 
    16210 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    16211 
    16212  
    16213 
    16214 > color name d3-t 100,27,36,50
    16215 
    16216 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    16217 
    16218  
    16219 
    16220 > color name d4-t 80,0,23,50
    16221 
    16222 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    16223 
    16224  
    16225 
    16226 > color name d5-t 100,60,4,50
    16227 
    16228 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    16229 
    16230  
    16231 
    16232 > color name fa-t 100,90,4,50
    16233 
    16234 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    16235 
    16236  
    16237 
    16238 > color name gtp-t 45,53,60,50
    16239 
    16240 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    16241 
    16242  
    16243 
    16244 > color name mg-t 1,39,16,50
    16245 
    16246 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    16247 
    16248  
    16249 
    16250 > color name spc-t 100,0,0,50
    16251 
    16252 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    16253 
    16254  
    16255 
    16256 > color name argb-t 50,0,50,50
    16257 
    16258 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    16259 
    16260  
    16261 
    16262 > color name g-1t 98,42,30,50
    16263 
    16264 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    16265 
    16266  
    16267 
    16268 > color name g-2t 95,35,25,50
    16269 
    16270 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    16271 
    16272  
    16273 
    16274 > color name g-3t 92,28,20,50
    16275 
    16276 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    16277 
    16278  
    16279 
    16280 > color name g-4t 89,21,15,50
    16281 
    16282 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    16283 
    16284  
    16285 
    16286 > color name g-5t 86,14,10,50
    16287 
    16288 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    16289 
    16290  
    16291 
    16292 > color name g-6t 83,7,5,50
    16293 
    16294 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    16295 
    16296  
    16297 
    16298 > color name g-7t 80,0,0,50
    16299 
    16300 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    16301 
    16302  
    16303 
    16304 > color name p-t 44,59,2,50
    16305 
    16306 Color 'p-t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    16307 
    16308  
    16309 
    16310 > color name p-c 44,59,2,100
    16311 
    16312 Color 'p-c' is opaque: rgb(44%, 59%, 2%) hex: #709605
    16313 
    16314  
    16315 
    16316 > color name p-1t 4,34,1,50
    16317 
    16318 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    16319 
    16320  
    16321 
    16322 > color name p-2t 12,39,1,50
    16323 
    16324 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    16325 
    16326  
    16327 
    16328 > color name p-3t 20,44,1,50
    16329 
    16330 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    16331 
    16332  
    16333 
    16334 > color name p-4t 28,49,1,50
    16335 
    16336 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    16337 
    16338  
    16339 
    16340 > color name p-5t 36,54,2,50
    16341 
    16342 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    16343 
    16344  
    16345 
    16346 > color name p-6t 44,59,2,50
    16347 
    16348 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    16349 
    16350  
    16351 
    16352 > color name p-7t 52,64,2,50
    16353 
    16354 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    16355 
    16356  
    16357 
    16358 > color name p-8t 60,69,2,50
    16359 
    16360 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    16361 
    16362  
    16363 
    16364 > color name p-9t 68,74,3,50
    16365 
    16366 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    16367 
    16368  
    16369 
    16370 > color name p-10t 76,79,3,50
    16371 
    16372 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    16373 
    16374  
    16375 
    16376 > color name p-11t 84,84,3,50
    16377 
    16378 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    16379 
    16380  
    16381 
    16382 > color name d-t 100,65,4,50
    16383 
    16384 Color 'd-t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    16385 
    16386  
    16387 
    16388 > color name d-c 100,65,4,100
    16389 
    16390 Color 'd-c' is opaque: rgb(100%, 65%, 4%) hex: #ffa60a
    16391 
    16392  
    16393 
    16394 > color name d-1t 100,100,4,50
    16395 
    16396 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    16397 
    16398  
    16399 
    16400 > color name d-2t 100,93,4,50
    16401 
    16402 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    16403 
    16404  
    16405 
    16406 > color name d-3t 100,86,4,50
    16407 
    16408 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    16409 
    16410  
    16411 
    16412 > color name d-4t 100,79,4,50
    16413 
    16414 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    16415 
    16416  
    16417 
    16418 > color name d-5t 100,72,4,50
    16419 
    16420 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    16421 
    16422  
    16423 
    16424 > color name d-6t 100,65,4,50
    16425 
    16426 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    16427 
    16428  
    16429 
    16430 > color name d-7t 100,58,4,50
    16431 
    16432 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    16433 
    16434  
    16435 
    16436 > color name d-8t 100,51,4,50
    16437 
    16438 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    16439 
    16440  
    16441 
    16442 > color name d-9t 100,44,4,50
    16443 
    16444 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    16445 
    16446  
    16447 
    16448 > color name d-10t 100,37,4,50
    16449 
    16450 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    16451 
    16452  
    16453 
    16454 > color name d-11t 100,30,4,50
    16455 
    16456 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    16457 
    16458  
    16459 
    16460 > color name m-t 95,43,62,50
    16461 
    16462 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    16463 
    16464  
    16465 
    16466 > color name m-c 95,43,62,100
    16467 
    16468 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    16469 
    16470  
    16471 
    16472 > color name m-1t 100,80,90,50
    16473 
    16474 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    16475 
    16476  
    16477 
    16478 > color name m-2t 98,76,87,50
    16479 
    16480 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    16481 
    16482  
    16483 
    16484 > color name m-3t 96,72,84,50
    16485 
    16486 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    16487 
    16488  
    16489 
    16490 > color name m-4t 94,68,81,50
    16491 
    16492 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    16493 
    16494  
    16495 
    16496 > color name m-5t 92,64,78,50
    16497 
    16498 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    16499 
    16500  
    16501 
    16502 > color name m-6t 90,60,75,50
    16503 
    16504 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    16505 
    16506  
    16507 
    16508 > color name m-7t 88,56,72,50
    16509 
    16510 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    16511 
    16512  
    16513 
    16514 > color name m-8t 86,52,69,50
    16515 
    16516 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    16517 
    16518  
    16519 
    16520 > color name m-9t 84,48,66,50
    16521 
    16522 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    16523 
    16524  
    16525 
    16526 > color name m-10t 82,44,63,50
    16527 
    16528 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    16529 
    16530  
    16531 
    16532 > color name m-11t 80,40,60,50
    16533 
    16534 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    16535 
    16536  
    16537 
    16538 > color name head-t 68,58,68,50
    16539 
    16540 Color 'head-t' is 50% transparent: rgba(68%, 58%, 68%, 50%) hex: #ad94ad80
    16541 
    16542  
    16543 
    16544 > color name head-c 68,58,68,100
    16545 
    16546 Color 'head-c' is opaque: rgb(68%, 58%, 68%) hex: #ad94ad
    16547 
    16548  
    16549 
    16550 > color name headfa-t 54,41,54,50
    16551 
    16552 Color 'headfa-t' is 50% transparent: rgba(54%, 41%, 54%, 50%) hex: #8a698a80
    16553 
    16554  
    16555 
    16556 > color name headblue-t 59,78,94,50
    16557 
    16558 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    16559 
    16560  
    16561 
    16562 > color name headh1-t 41,64,100,50
    16563 
    16564 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    16565 
    16566  
    16567 
    16568 > color name headh2-t 50,70,100,50
    16569 
    16570 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    16571 
    16572  
    16573 
    16574 > color name headgray-t 60,60,60,50
    16575 
    16576 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    16577 
    16578  
    16579 
    16580 > color name darkhead-s 54,41,54,100
    16581 
    16582 Color 'darkhead-s' is opaque: rgb(54%, 41%, 54%) hex: #8a698a
    16583 
    16584  
    16585 
    16586 > color name bodywhite-t 90,90,90,50
    16587 
    16588 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    16589 #e6e6e680
    16590 
    16591  
    16592 
    16593 > color name rps-t 75,88,93,50
    16594 
    16595 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    16596 
    16597  
    16598 
    16599 > color name ssu-t 69,79,82,50
    16600 
    16601 Color 'ssu-t' is 50% transparent: rgba(69%, 79%, 82%, 50%) hex: #b0c9d180
    16602 
    16603  
    16604 
    16605 > color name ssu-c 69,79,82,100
    16606 
    16607 Color 'ssu-c' is opaque: rgb(69%, 79%, 82%) hex: #b0c9d1
    16608 
    16609  
    16610 
    16611 > color name h18-t 31,59,68,50
    16612 
    16613 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    16614 
    16615  
    16616 
    16617 > color name h18-c 31,59,68,100
    16618 
    16619 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    16620 
    16621  
    16622 
    16623 > color name h23-t 18,36,100,50
    16624 
    16625 Color 'h23-t' is 50% transparent: rgba(18%, 36%, 100%, 50%) hex: #2e5cff80
    16626 
    16627  
    16628 
    16629 > color name h23-c 18,36,100,100
    16630 
    16631 Color 'h23-c' is opaque: rgb(18%, 36%, 100%) hex: #2e5cff
    16632 
    16633  
    16634 
    16635 > color name h24-t 50,70,90,50
    16636 
    16637 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    16638 
    16639  
    16640 
    16641 > color name h24-c 50,70,90,100
    16642 
    16643 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    16644 
    16645  
    16646 
    16647 > color name h28-t 0,24,57,50
    16648 
    16649 Color 'h28-t' is 50% transparent: rgba(0%, 24%, 57%, 50%) hex: #003d9180
    16650 
    16651  
    16652 
    16653 > color name h28-c 0,24,57,100
    16654 
    16655 Color 'h28-c' is opaque: rgb(0%, 24%, 57%) hex: #003d91
    16656 
    16657  
    16658 
    16659 > color name h29-t 80,69,92,50
    16660 
    16661 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    16662 
    16663  
    16664 
    16665 > color name h29-c 80,69,92,100
    16666 
    16667 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    16668 
    16669  
    16670 
    16671 > color name h30-t 40,40,59,50
    16672 
    16673 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    16674 
    16675  
    16676 
    16677 > color name h30-c 40,40,59,100
    16678 
    16679 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    16680 
    16681  
    16682 
    16683 > color name h31-t 45,18,59,50
    16684 
    16685 Color 'h31-t' is 50% transparent: rgba(45%, 18%, 59%, 50%) hex: #732e9680
    16686 
    16687  
    16688 
    16689 > color name h31-c 45,18,59,100
    16690 
    16691 Color 'h31-c' is opaque: rgb(45%, 18%, 59%) hex: #732e96
    16692 
    16693  
    16694 
    16695 > color name h34-t 59,18,59,50
    16696 
    16697 Color 'h34-t' is 50% transparent: rgba(59%, 18%, 59%, 50%) hex: #962e9680
    16698 
    16699  
    16700 
    16701 > color name h34-c 59,18,59,100
    16702 
    16703 Color 'h34-c' is opaque: rgb(59%, 18%, 59%) hex: #962e96
    16704 
    16705  
    16706 
    16707 > color name h35-t 50,22,45,50
    16708 
    16709 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    16710 
    16711  
    16712 
    16713 > color name h35-c 50,22,45,100
    16714 
    16715 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    16716 
    16717  
    16718 
    16719 > color name h44-t 27,50,80,50
    16720 
    16721 Color 'h44-t' is 50% transparent: rgba(27%, 50%, 80%, 50%) hex: #4580cc80
    16722 
    16723  
    16724 
    16725 > color name h44-c 27,50,80,100
    16726 
    16727 Color 'h44-c' is opaque: rgb(27%, 50%, 80%) hex: #4580cc
    16728 
    16729  
    16730 
    16731 > color name aploop-t 27,0,50,50
    16732 
    16733 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    16734 
    16735  
    16736 
    16737 > color name term16-t 40,64,64,50
    16738 
    16739 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    16740 
    16741  
    16742 
    16743 > color name uS3-t 64,41,82,50
    16744 
    16745 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    16746 
    16747  
    16748 
    16749 > color name uS5-t 0,50,45,50
    16750 
    16751 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    16752 
    16753  
    16754 
    16755 > color name gray-t 70,70,70,50
    16756 
    16757 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    16758 
    16759  
    16760 
    16761 > color name hx84-t 50,50,50,50
    16762 
    16763 Color 'hx84-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    16764 
    16765  
    16766 
    16767 > color name hx84-c 50,50,50,100
    16768 
    16769 Color 'hx84-c' is opaque: gray(50%) hex: #808080
    16770 
    16771  
    16772 
    16773 > color name hx84-dt 30,30,30,50
    16774 
    16775 Color 'hx84-dt' is 50% transparent: rgba(30%, 30%, 30%, 50%) hex: #4d4d4d80
    16776 
    16777  
    16778 
    16779 > color name hx84-dc 30,30,30,100
    16780 
    16781 Color 'hx84-dc' is opaque: gray(30%) hex: #4d4d4d
    16782 
    16783  
    16784 
    16785 > color name hx68-t 50,50,50,50
    16786 
    16787 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    16788 
    16789  
    16790 
    16791 > color name hx68-c 50,50,50,100
    16792 
    16793 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    16794 
    16795  
    16796 
    16797 > color name hx69-t 40,40,40,50
    16798 
    16799 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    16800 
    16801  
    16802 
    16803 > color name hx69-c 40,40,40,100
    16804 
    16805 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    16806 
    16807  
    16808 
    16809 > color name hx38-t 34,42,36,50
    16810 
    16811 Color 'hx38-t' is 50% transparent: rgba(34%, 42%, 36%, 50%) hex: #576b5c80
    16812 
    16813  
    16814 
    16815 > color name hx38-c 34,42,36,100
    16816 
    16817 Color 'hx38-c' is opaque: rgb(34%, 42%, 36%) hex: #576b5c
    16818 
    16819  
    16820 
    16821 > color name hx38-dt 34,42,36,50
    16822 
    16823 Color 'hx38-dt' is 50% transparent: rgba(34%, 42%, 36%, 50%) hex: #576b5c80
    16824 
    16825  
    16826 
    16827 > color name hx38-dc 34,42,36,100
    16828 
    16829 Color 'hx38-dc' is opaque: rgb(34%, 42%, 36%) hex: #576b5c
    16830 
    16831  
    16832 
    16833 > color name ul5-t 55,62,67,50
    16834 
    16835 Color 'ul5-t' is 50% transparent: rgba(55%, 62%, 67%, 50%) hex: #8c9eab80
    16836 
    16837  
    16838 
    16839 > color name ul5-c 55,62,67,100
    16840 
    16841 Color 'ul5-c' is opaque: rgb(55%, 62%, 67%) hex: #8c9eab
    16842 
    16843  
    16844 
    16845 > color name ul5-dt 38,47,52,50
    16846 
    16847 Color 'ul5-dt' is 50% transparent: rgba(38%, 47%, 52%, 50%) hex: #61788580
    16848 
    16849  
    16850 
    16851 > color name ul5-dc 38,47,52,100
    16852 
    16853 Color 'ul5-dc' is opaque: rgb(38%, 47%, 52%) hex: #617885
    16854 
    16855  
    16856 
    16857 > color name ul16-t 70,70,70,50
    16858 
    16859 Color 'ul16-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    16860 
    16861  
    16862 
    16863 > color name ul16-c 70,70,70,100
    16864 
    16865 Color 'ul16-c' is opaque: gray(70%) hex: #b3b3b3
    16866 
    16867  
    16868 
    16869 > color name srl-t 50,50,50,50
    16870 
    16871 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    16872 
    16873  
    16874 
    16875 > color name srl-t 50,50,50,100
    16876 
    16877 Color 'srl-t' is opaque: gray(50%) hex: #808080
    16878 
    16879  
    16880 
    16881 > color name highlight-t 92,78,8,50
    16882 
    16883 Color 'highlight-t' is 50% transparent: rgba(92%, 78%, 8%, 50%) hex: #ebc71480
    16884 
    16885  
    16886 
    16887 > color name highlight-c 92,78,8,100
    16888 
    16889 Color 'highlight-c' is opaque: rgb(92%, 78%, 8%) hex: #ebc714
    16890 
    16891  
    16892 
    16893 > color name tomato-t 100,39,28,50
    16894 
    16895 Color 'tomato-t' is 50% transparent: rgba(100%, 39%, 28%, 50%) hex: #ff634780
    16896 
    16897  
    16898 
    16899 > color name tomato-c 100,39,28,100
    16900 
    16901 Color 'tomato-c' is opaque: rgb(100%, 39%, 28%) hex: #ff6347
    16902 
    16903  
    16904 
    16905 > color name lightgrayt 83,83,83,50
    16906 
    16907 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    16908 
    16909  
    16910 
    16911 > color name silvert 75,75,75,50
    16912 
    16913 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    16914 
    16915  
    16916 
    16917 > color name grayt 50,50,50,50
    16918 
    16919 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    16920 
    16921  
    16922 
    16923 > color name lightcyant 88,100,100,50
    16924 
    16925 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    16926 #e0ffff80
    16927 
    16928  
    16929 
    16930 > color name yellowt 100,90,0,50
    16931 
    16932 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    16933 
    16934  
    16935 
    16936 > color name deeppinkt 100,8,58,50
    16937 
    16938 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    16939 
    16940  
    16941 
    16942 > color name oranget 100,65,0,50
    16943 
    16944 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    16945 
    16946  
    16947 
    16948 > color name yellowgreent 60,80,20,50
    16949 
    16950 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    16951 #99cc3380
    16952 
    16953  
    16954 
    16955 > color name darkmagentat 54,0,54,50
    16956 
    16957 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    16958 #8a008a80
    16959 
    16960  
    16961 
    16962 > color name orchidt 86,44,84,50
    16963 
    16964 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    16965 
    16966  
    16967 
    16968 > color name paleturquoiset 69,93,93,50
    16969 
    16970 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    16971 #b0eded80
    16972 
    16973  
    16974 
    16975 > color name pinkt 100,75,80,50
    16976 
    16977 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    16978 
    16979  
    16980 
    16981 > color name darkgreent 0,39,0,50
    16982 
    16983 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    16984 
    16985  
    16986 
    16987 > color name limegreent 20,80,20,50
    16988 
    16989 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    16990 
    16991  
    16992 
    16993 > color name turquoiset 25,88,82,50
    16994 
    16995 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    16996 
    16997  
    16998 
    16999 > color name tealt 0,50,50,50
    17000 
    17001 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    17002 
    17003  
    17004 
    17005 > color name darkoranget 100,50,0,50
    17006 
    17007 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    17008 #ff800080
    17009 
    17010  
    17011 
    17012 > color name lightyellowt 100,100,50,50
    17013 
    17014 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    17015 #ffff8080
    17016 
    17017  
    17018 
    17019 > color name goldt 100,75,0,50
    17020 
    17021 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    17022 
    17023  
    17024 
    17025 > color name plumt 87,63,87,50
    17026 
    17027 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    17028 
    17029  
    17030 
    17031 > color name ssubluet 68,86,90,50
    17032 
    17033 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    17034 
    17035  
    17036 
    17037 > color name p-prect 10,41,0,50
    17038 
    17039 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    17040 
    17041  
    17042 
    17043 > color name p-h2t 23,59,0,50
    17044 
    17045 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    17046 
    17047  
    17048 
    17049 > color name p-h1t 40,73,0,50
    17050 
    17051 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    17052 
    17053  
    17054 
    17055 > color name p-h1c 40,73,0,100
    17056 
    17057 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    17058 
    17059  
    17060 
    17061 > color name p-spct 68,81,0,50
    17062 
    17063 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    17064 
    17065  
    17066 
    17067 > color name p-spcc 68,81,0,100
    17068 
    17069 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    17070 
    17071  
    17072 
    17073 > color name p-fat 82,92,0,50
    17074 
    17075 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    17076 
    17077  
    17078 
    17079 > color name p-postt 100,92,0,50
    17080 
    17081 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    17082 
    17083  
    17084 
    17085 > color name d-t 100,80,4,50
    17086 
    17087 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    17088 
    17089  
    17090 
    17091 > color name d-prect 95,100,50,50
    17092 
    17093 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    17094 
    17095  
    17096 
    17097 > color name d-h2t 100,90,4,50
    17098 
    17099 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    17100 
    17101  
    17102 
    17103 > color name d-h1t 100,80,4,50
    17104 
    17105 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    17106 
    17107  
    17108 
    17109 > color name d-spct 100,70,4,50
    17110 
    17111 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    17112 
    17113  
    17114 
    17115 > color name d-fat 100,55,4,50
    17116 
    17117 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    17118 
    17119  
    17120 
    17121 > color name d-fac 100,55,4,100
    17122 
    17123 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    17124 
    17125  
    17126 
    17127 > color name d-postt 100,40,4,50
    17128 
    17129 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    17130 
    17131  
    17132 
    17133 > color name m-t 95,43,62,50
    17134 
    17135 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    17136 
    17137  
    17138 
    17139 > color name m-prect 100,85,95,50
    17140 
    17141 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    17142 
    17143  
    17144 
    17145 > color name m-h2t 100,85,95,50
    17146 
    17147 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    17148 
    17149  
    17150 
    17151 > color name m-h1t 100,75,95,50
    17152 
    17153 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    17154 
    17155  
    17156 
    17157 > color name m-spct 89,63,75,50
    17158 
    17159 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    17160 
    17161  
    17162 
    17163 > color name m-fat 95,51,75,50
    17164 
    17165 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    17166 
    17167  
    17168 
    17169 > color name m-fac 95,51,75,100
    17170 
    17171 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    17172 
    17173  
    17174 
    17175 > color name m-postt 95,43,62,50
    17176 
    17177 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    17178 
    17179  
    17180 executed 70S_colors.cxc 
    17181 
    17182 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    17183 
    17184 > color 100,100,100,50
    17185 
    17186 > color lsu silvert
    17187 
    17188 > color /3 lightgrayt
    17189 
    17190 > color /5 lightgrayt
    17191 
    17192 > color ssu ssu-t
    17193 
    17194 > color head head-t
    17195 
    17196 > color efg efg-t
    17197 
    17198 > color dt d-t
    17199 
    17200 > color pt p-t
    17201 
    17202 > color pep p-t
    17203 
    17204 > color mrna m-t
    17205 
    17206 executed 70S_colorstandard.cxc 
    17207 
    17208 > windowsize 1000 1000
    17209 
    17210 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    17211 
    17212 > color h18 h18-t
    17213 
    17214 > color h23 h23-t
    17215 
    17216 > color h24 h24-t
    17217 
    17218 > color h28 h28-t
    17219 
    17220 > color h29 h29-t
    17221 
    17222 > color h30 h30-t
    17223 
    17224 > color h31 h31-t
    17225 
    17226 > color h34 h34-t
    17227 
    17228 > color h35 h35-t
    17229 
    17230 > color h36 h36-t
    17231 
    17232 > color h44 h44-t
    17233 
    17234 > color H69 hx69-t
    17235 
    17236 executed 70S_color_helices.cxc 
    17237 
    17238 > color h30|h36|h35 head-t
    17239 
    17240 > view dc3
    17241 
    17242 > surface cap true
    17243 
    17244 > color zone #12.1 near #12.3,5 distance 5
    17245 
    17246 > color zone #13.1 near #13.3,5 distance 5
    17247 
    17248 > color zone #14.1 near #14.3,5 distance 5
    17249 
    17250 > color zone #30.1 near #30.3,5 distance 5
    17251 
    17252 > color zone #31.1 near #31.3,5 distance 5
    17253 
    17254 > color zone #32.1 near #32.3,5 distance 5
    17255 
    17256 > color zone #33.1 near #33.3,5 distance 5
    17257 
    17258 > color zone #34.1 near #34.3,5 distance 5
    17259 
    17260 > color zone #30.9 near #30.3,5 distance 5
    17261 
    17262 > color zone #31.9 near #31.3,5 distance 5
    17263 
    17264 > color zone #32.9 near #32.3,5 distance 5
    17265 
    17266 > color zone #33.9 near #33.3,5 distance 5
    17267 
    17268 > color zone #34.9 near #34.3,5 distance 5
    17269 
    17270 > color h30|h36|h35 head-c
    17271 
    17272 > color h28 h28-c
    17273 
    17274 > color h29 h29-c
    17275 
    17276 > color h34 h34-c
    17277 
    17278 > color h23 h23-c
    17279 
    17280 > color h24 h24-c
    17281 
    17282 > color h31 h31-c
    17283 
    17284 > hide #!100
    17285 
    17286 > hide #101 models
    17287 
    17288 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    17289 
    17290 > transparency #*.3 0 target abc
    17291 
    17292 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    17293 
    17294 > color h18 h18-c
    17295 
    17296 > color h23 h23-c
    17297 
    17298 > color h24 h24-c
    17299 
    17300 > color h28 h28-c
    17301 
    17302 > color h29 h29-c
    17303 
    17304 > color h30 h30-c
    17305 
    17306 > color h31 h31-c
    17307 
    17308 > color h34 h34-c
    17309 
    17310 > color h35 h35-c
    17311 
    17312 > color h44 h44-c
    17313 
    17314 > color H69 hx69-c
    17315 
    17316 executed 70S_color_helices-s.cxc 
    17317 
    17318 > color /v d-c
    17319 
    17320 > color /y p-c
    17321 
    17322 > color /w m-c
    17323 
    17324 executed gtpys_dc.cxc 
    17325 
    17326 > surface cap true
    17327 
    17328 > lighting gentle
    17329 
    17330 > lighting intensity .2
    17331 
    17332 > size stickRadius 0.17
    17333 
    17334 Changed 1744812 bond radii 
    17335 
    17336 > nucribthin
    17337 
    17338 > style ringFill thin
    17339 
    17340 Changed 122200 residue ring styles 
    17341 
    17342 > graphics silhouettes true color black
    17343 
    17344 > ~select
    17345 
    17346 Nothing selected 
    17347 
    17348 > ~select
    17349 
    17350 Nothing selected 
    17351 
    17352 > ~ribbon
    17353 
    17354 > ~display
    17355 
    17356 > ribbon
    17357 
    17358 > ~ribbon mrna
    17359 
    17360 > display mrna
    17361 
    17362 > display antiplus
    17363 
    17364 > display /x:505-514,584
    17365 
    17366 > display /6:1492,1493,530,532,1054,1400,1397
    17367 
    17368 > display /3:1913
    17369 
    17370 > display #*.3/L:44
    17371 
    17372 > hide models
    17373 
    17374 > show #31.3,5 models
    17375 
    17376 > view dc1
    17377 
    17378 > windowsize 1000 1000
    17379 
    17380 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    17381 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17382 
    17383 > view dc2
    17384 
    17385 > windowsize 1000 1000
    17386 
    17387 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    17388 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17389 
    17390 > hide models
    17391 
    17392 > show #32.3,5 models
    17393 
    17394 > windowsize 1000 1000
    17395 
    17396 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    17397 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17398 
    17399 > view dc2
    17400 
    17401 > windowsize 1000 1000
    17402 
    17403 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    17404 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17405 
    17406 > hide models
    17407 
    17408 > show #12.3,5 models
    17409 
    17410 > view dc1
    17411 
    17412 > windowsize 1000 1000
    17413 
    17414 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    17415 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17416 
    17417 > view dc2
    17418 
    17419 > windowsize 1000 1000
    17420 
    17421 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    17422 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17423 
    17424 > hide models
    17425 
    17426 > show #33.3,5 models
    17427 
    17428 > view dc1
    17429 
    17430 > windowsize 1000 1000
    17431 
    17432 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    17433 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17434 
    17435 > view dc2
    17436 
    17437 > windowsize 1000 1000
    17438 
    17439 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    17440 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17441 
    17442 > hide models
    17443 
    17444 > show #34.3,5 models
    17445 
    17446 > view dc1
    17447 
    17448 > windowsize 1000 1000
    17449 
    17450 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    17451 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17452 
    17453 > view dc2
    17454 
    17455 > windowsize 1000 1000
    17456 
    17457 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    17458 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17459 
    17460 > hide models
    17461 
    17462 > show #13.3,5 models
    17463 
    17464 > view dc1
    17465 
    17466 > windowsize 1000 1000
    17467 
    17468 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    17469 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17470 
    17471 > view dc2
    17472 
    17473 > windowsize 1000 1000
    17474 
    17475 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    17476 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17477 
    17478 > hide models
    17479 
    17480 > show #14.3,5 models
    17481 
    17482 > ~display #14.3/w:38,49
    17483 
    17484 > view dc1
    17485 
    17486 > windowsize 1000 1000
    17487 
    17488 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    17489 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17490 
    17491 > view dc2
    17492 
    17493 > windowsize 1000 1000
    17494 
    17495 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    17496 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17497 
    17498 > graphics silhouettes true color 25,25,25,15
    17499 
    17500 > style ringFill thick
    17501 
    17502 Changed 122200 residue ring styles 
    17503 
    17504 > ~cartoon /6/3
    17505 
    17506 > display /6/3
    17507 
    17508 > ~cartoon trna
    17509 
    17510 > display trna
    17511 
    17512 > volume emmaps style surface step 1 level 3
    17513 
    17514 > surface dust emmaps size 2
    17515 
    17516 > volume emmaps surfaceSmoothing true
    17517 
    17518 > view dc3
    17519 
    17520 > hide models
    17521 
    17522 > show #30 models
    17523 
    17524 > select #30.3
    17525 
    17526 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    17527 
    17528 > hide #30.9 models
    17529 
    17530 > windowsize 1000 1000
    17531 
    17532 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    17533 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17534 
    17535 > hide models
    17536 
    17537 > show #31 models
    17538 
    17539 > select #31.3
    17540 
    17541 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    17542 
    17543 > hide #31.9 models
    17544 
    17545 > windowsize 1000 1000
    17546 
    17547 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    17548 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17549 
    17550 > hide models
    17551 
    17552 > show #32 models
    17553 
    17554 > select #32.3
    17555 
    17556 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    17557 
    17558 > hide #32.9 models
    17559 
    17560 > windowsize 1000 1000
    17561 
    17562 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    17563 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17564 
    17565 > hide models
    17566 
    17567 > show #12 models
    17568 
    17569 > select #12.3
    17570 
    17571 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    17572 
    17573 > windowsize 1000 1000
    17574 
    17575 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    17576 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17577 
    17578 > hide models
    17579 
    17580 > show #33 models
    17581 
    17582 > select #33.3
    17583 
    17584 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    17585 
    17586 > hide #33.9 models
    17587 
    17588 > windowsize 1000 1000
    17589 
    17590 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    17591 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17592 
    17593 > hide models
    17594 
    17595 > show #34 models
    17596 
    17597 > select #34.3
    17598 
    17599 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    17600 
    17601 > hide #34.9 models
    17602 
    17603 > windowsize 1000 1000
    17604 
    17605 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    17606 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17607 
    17608 > hide models
    17609 
    17610 > show #13 models
    17611 
    17612 > select #13.3
    17613 
    17614 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    17615 
    17616 > windowsize 1000 1000
    17617 
    17618 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    17619 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17620 
    17621 > hide models
    17622 
    17623 > show #14 models
    17624 
    17625 > ~display #14.3/w:38,49
    17626 
    17627 > select #14.3
    17628 
    17629 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    17630 
    17631 > windowsize 1000 1000
    17632 
    17633 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    17634 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17635 
    17636 > volume emmaps style surface step 1 level 8
    17637 
    17638 > surface dust emmaps size 2
    17639 
    17640 > volume emmaps surfaceSmoothing true
    17641 
    17642 > hide models
    17643 
    17644 > show #30.3,5,9 models
    17645 
    17646 > select #30.3
    17647 
    17648 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    17649 
    17650 > windowsize 1000 1000
    17651 
    17652 > save
    17653 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1a-FR.tif
    17654 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17655 
    17656 > hide models
    17657 
    17658 > show #31.3,5,9 models
    17659 
    17660 > select #31.3
    17661 
    17662 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    17663 
    17664 > windowsize 1000 1000
    17665 
    17666 > save
    17667 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1b-FR.tif
    17668 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17669 
    17670 > hide models
    17671 
    17672 > show #32.3,5,9 models
    17673 
    17674 > select #32.3
    17675 
    17676 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    17677 
    17678 > windowsize 1000 1000
    17679 
    17680 > save
    17681 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1c-FR.tif
    17682 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17683 
    17684 > hide models
    17685 
    17686 > show #33.3,5,9 models
    17687 
    17688 > select #33.3
    17689 
    17690 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    17691 
    17692 > windowsize 1000 1000
    17693 
    17694 > save
    17695 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysI1a-FR.tif
    17696 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    17697 
    17698 > hide models
    17699 
    17700 > show #34.3,5,9 models
    17701 
    17702 > select #34.3
    17703 
    17704 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    17705 
    17706 > windowsize 1000 1000
    17707 
    17708 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_I1bys-
    17709 > FR.tif format tiff width 1000 height 1000 supersample 20
    17710 > transparentBackground true
    17711 
    17712 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    17713 
    17714 ——— End of log from Tue Jul 18 11:01:24 2023 ———
    17715 
    17716 opened ChimeraX session 
    17717 
    17718 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    17719 
    17720 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    17721 
    17722 > name atomods #*.3|#*.5
    17723 
    17724 > name emmaps #*.1|#*.7|#*.8|#*.9
    17725 
    17726 > name lsu #*.5
    17727 
    17728 > name lsumap #*.8
    17729 
    17730 > name ssu #*.3
    17731 
    17732 > name ssumap #*.7
    17733 
    17734 > name ligmap #*.9
    17735 
    17736 > name rna /y,v,w,3,6,5
    17737 
    17738 > name r23s /3
    17739 
    17740 > name r16s /6
    17741 
    17742 > name r5s /5
    17743 
    17744 > name pt /y
    17745 
    17746 > name dt /v
    17747 
    17748 > name efg /x
    17749 
    17750 > name pep /p
    17751 
    17752 > name mrna /w
    17753 
    17754 > name GSP :GSP
    17755 
    17756 > name GDP :GDP
    17757 
    17758 > name GTP :GTP
    17759 
    17760 > name ntide :GTP|:GDP|:GSP
    17761 
    17762 > name spc :SCM
    17763 
    17764 > name fua :FUA
    17765 
    17766 > name par :PAR
    17767 
    17768 > name argb :LIG
    17769 
    17770 > name drugs argb|par|fua|spc
    17771 
    17772 > name D1 /x:start-293
    17773 
    17774 > name D2 /x:294-410
    17775 
    17776 > name D3 /x:411-489
    17777 
    17778 > name D4 /x:490-612
    17779 
    17780 > name D5 /x:613-end
    17781 
    17782 > name sw1 /x:38-65
    17783 
    17784 > name sw2 /x:89-108
    17785 
    17786 > name pl /x:18-25
    17787 
    17788 > name nkxd /x:142-146
    17789 
    17790 > name mg /x:MG
    17791 
    17792 > name trna /y,v
    17793 
    17794 > name anticodon /y,v:34-36
    17795 
    17796 > name antiplus /y,v:32-38
    17797 
    17798 > name cca /y,v:74-76
    17799 
    17800 > name astem /y,v:1-7,66-73
    17801 
    17802 > name darm /y,v:8-25
    17803 
    17804 > name aarm /y,v:26-43
    17805 
    17806 > name varm /y,v:44-48
    17807 
    17808 > name tarm /y,v:49-65
    17809 
    17810 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    17811 
    17812 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    17813 
    17814 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    17815 
    17816 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    17817 
    17818 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    17819 
    17820 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    17821 
    17822 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    17823 
    17824 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    17825 
    17826 > name aploop /6:956-959
    17827 
    17828 > name term16S /6:1503-end
    17829 
    17830 > name aphelix /6:1228-1230
    17831 
    17832 > name us2 #*.3/B
    17833 
    17834 > name us3 #*.3/C
    17835 
    17836 > name us4 #*.3/D
    17837 
    17838 > name us5 #*.3/E
    17839 
    17840 > name us6 #*.3/F
    17841 
    17842 > name us7 #*.3/G
    17843 
    17844 > name us8 #*.3/H
    17845 
    17846 > name us9 #*.3/I
    17847 
    17848 > name us10 #*.3/J
    17849 
    17850 > name us11 #*.3/K
    17851 
    17852 > name us12 #*.3/L
    17853 
    17854 > name us13 #*.3/M
    17855 
    17856 > name us14 #*.3/N
    17857 
    17858 > name us15 #*.3/O
    17859 
    17860 > name us16 #*.3/P
    17861 
    17862 > name us17 #*.3/Q
    17863 
    17864 > name us18 #*.3/R
    17865 
    17866 > name us19 #*.3/S
    17867 
    17868 > name us20 #*.3/T
    17869 
    17870 > name us21 #*.3/U
    17871 
    17872 > name us9-130 #*.3/I:130
    17873 
    17874 > name l1stalk /3:2097-2191
    17875 
    17876 > name srl /3:2652-2668
    17877 
    17878 > name asf /3:863-910
    17879 
    17880 > name l1stalk /3:2094-2195
    17881 
    17882 > name ul1 #*.5/A
    17883 
    17884 > name ul2 #*.5/B
    17885 
    17886 > name ul3 #*.5/C
    17887 
    17888 > name ul4 #*.5/D
    17889 
    17890 > name ul5 #*.5/E
    17891 
    17892 > name ul6 #*.5/F
    17893 
    17894 > name ul7 #*.5/G
    17895 
    17896 > name ul9 #*.5/I
    17897 
    17898 > name ul10 #*.5/J
    17899 
    17900 > name ul11 #*.5/K
    17901 
    17902 > name ul13 #*.5/M
    17903 
    17904 > name ul14 #*.5/N
    17905 
    17906 > name ul15 #*.5/O
    17907 
    17908 > name ul16 #*.5/P
    17909 
    17910 > name ul17 #*.5/Q
    17911 
    17912 > name ul18 #*.5/R
    17913 
    17914 > name ul19 #*.5/S
    17915 
    17916 > name ul20 #*.5/T
    17917 
    17918 > name ul21 #*.5/U
    17919 
    17920 > name ul22 #*.5/V
    17921 
    17922 > name ul23 #*.5/W
    17923 
    17924 > name ul24 #*.5/X
    17925 
    17926 > name ul25 #*.5/Y
    17927 
    17928 > name ul27 #*.5/a
    17929 
    17930 > name ul28 #*.5/b
    17931 
    17932 > name ul29 #*.5/c
    17933 
    17934 > name ul30 #*.5/d
    17935 
    17936 > name ul31 #*.5/e
    17937 
    17938 > name ul32 #*.5/f
    17939 
    17940 > name ul33 #*.5/g
    17941 
    17942 > name ul34 #*.5/h
    17943 
    17944 > name ul35 #*.5/i
    17945 
    17946 > name ul36 #*.5/j
    17947 
    17948 > name h1 #*.3/6:9-13|#*.3/6:21-25
    17949 
    17950 > name h2 #*.3/6:17-19|#*.3/6:916-918
    17951 
    17952 > name h3 #*.3/6:27-37|#*.3/6:547-556
    17953 
    17954 > name h4 #*.3/6:39-46|#*.3/6:395-403
    17955 
    17956 > name h5 #*.3/6:47-58|#*.3/6:354-360
    17957 
    17958 > name h6 #*.3/6:61-106
    17959 
    17960 > name h7 #*.3/6:122-142|#*.3/6:221-239
    17961 
    17962 > name h8 #*.3/6:144-178
    17963 
    17964 > name h9 #*.3/6:184-193
    17965 
    17966 > name h10 #*.3/6:198-219
    17967 
    17968 > name h11 #*.3/6:240-286
    17969 
    17970 > name h12 #*.3/6:289-311
    17971 
    17972 > name h13 #*.3/6:316-337
    17973 
    17974 > name h14 #*.3/6:339-350
    17975 
    17976 > name h15 #*.3/6:367-393
    17977 
    17978 > name h16 #*.3/6:406-436
    17979 
    17980 > name h17 #*.3/6:437-497
    17981 
    17982 > name h18 #*.3/6:500-545
    17983 
    17984 > name h19 #*.3/6:567-569|#*.3/6:881-88
    17985 
    17986 > name h20 #*.3/6:577-586|#*.3/6:755-76
    17987 
    17988 > name h21 #*.3/6:588-651
    17989 
    17990 > name h22 #*.3/6:654-672|#*.3/6:734-75
    17991 
    17992 > name h23 #*.3/6:673-733
    17993 
    17994 > name h24 #*.3/6:769-810
    17995 
    17996 > name h25 #*.3/6:821-827|#*.3/6:873-87
    17997 
    17998 > name h26 #*.3/6:829-857
    17999 
    18000 > name h26a #*.3/6:861-868
    18001 
    18002 > name h27 #*.3/6:885-912
    18003 
    18004 > name h28 #*.3/6:921-937|#*.3/6:1379-1400
    18005 
    18006 > name h29 #*.3/6:938-943|#*.3/6:1337-1346
    18007 
    18008 > name h30 #*.3/6:945-955|#*.3/6:1225-1236
    18009 
    18010 > name h31 #*.3/6:956-975
    18011 
    18012 > name h32 #*.3/6:984-990|#*.3/6:1215-1221
    18013 
    18014 > name h33 #*.3/6:996-1045
    18015 
    18016 > name h34 #*.3/6:1045-1065|#*.3/6:1188-1211
    18017 
    18018 > name h35 #*.3/6:1066-1073|#*.3/6:1102-1110
    18019 
    18020 > name h36 #*.3/6:1074-1083
    18021 
    18022 > name h37 #*.3/6:1086-1099
    18023 
    18024 > name h38 #*.3/6:1113-1117|#*.3/6:1183-1187
    18025 
    18026 > name h39 #*.3/6:1118-1155
    18027 
    18028 > name h40 #*.3/6:1161-1175
    18029 
    18030 > name h41 #*.3/6:1241-1296
    18031 
    18032 > name h42 #*.3/6:1303-1334
    18033 
    18034 > name h43 #*.3/6:1350-1372
    18035 
    18036 > name h44 #*.3/6:1401-1502
    18037 
    18038 > name h45 #*.3/6:1506-1529
    18039 
    18040 > name H1 #*.5/3:1-8|#*.5/3:2895-2904
    18041 
    18042 > name H2 #*.5/3:15-24|#*.5/3:516-525
    18043 
    18044 > name H3 #*.5/3:31-32|#*.5/3:473-474
    18045 
    18046 > name H4 #*.5/3:35-45|#*.5/3:433-445
    18047 
    18048 > name H5 #*.5/3:54-57|#*.5/3:114-117
    18049 
    18050 > name H6 #*.5/3:58-69
    18051 
    18052 > name H7 #*.5/3:75-110
    18053 
    18054 > name H8 #*.5/3:121-130
    18055 
    18056 > name H9 #*.5/3:131-148
    18057 
    18058 > name H10 #*.5/3:150-176
    18059 
    18060 > name H11 #*.5/3:183-213
    18061 
    18062 > name H12 #*.5/3:224-231
    18063 
    18064 > name H13 #*.5/3:235-262
    18065 
    18066 > name H14 #*.5/3:265-268|#*.5/3:424-427
    18067 
    18068 > name H16 #*.5/3:271-274|#*.5/3:363-366
    18069 
    18070 > name H18 #*.5/3:281-297|#*.5/3:341-359
    18071 
    18072 > name H19 #*.5/3:301-316
    18073 
    18074 > name H20 #*.5/3:325-337
    18075 
    18076 > name H21 #*.5/3:375-399
    18077 
    18078 > name H22 #*.5/3:406-421
    18079 
    18080 > name H23 #*.5/3:461-468
    18081 
    18082 > name H24 #*.5/3:484-496
    18083 
    18084 > name H25 #*.5/3:533-560
    18085 
    18086 > name H26 #*.5/3:579-584|#*.5/3:1256-1261
    18087 
    18088 > name H27 #*.5/3:589-601|#*.5/3:656-668
    18089 
    18090 > name H28 #*.5/3:604-624
    18091 
    18092 > name H29 #*.5/3:628-635
    18093 
    18094 > name H31 #*.5/3:637-651
    18095 
    18096 > name H32 #*.5/3:678-683|#*.5/3:794-799
    18097 
    18098 > name H33 #*.5/3:687-698|#*.5/3:763-775
    18099 
    18100 > name H34 #*.5/3:700-732
    18101 
    18102 > name H35 #*.5/3:736-760
    18103 
    18104 > name H35a #*.5/3:777-787
    18105 
    18106 > name H36 #*.5/3:812-817|#*.5/3:1190-1195
    18107 
    18108 > name H37 #*.5/3:822-835
    18109 
    18110 > name H38 #*.5/3:838-940
    18111 
    18112 > name H39 #*.5/3:946-971
    18113 
    18114 > name H40 #*.5/3:976-987
    18115 
    18116 > name H41 #*.5/3:991-1018|#*.5/3:1144-1163
    18117 
    18118 > name H42 #*.5/3:1030-1055|#*.5/3:1104-1124
    18119 
    18120 > name H43 #*.5/3:1057-1081
    18121 
    18122 > name H44 #*.5/3:1087-1102
    18123 
    18124 > name H45 #*.5/3:1164-1185
    18125 
    18126 > name H46 #*.5/3:1198-1247
    18127 
    18128 > name H47 #*.5/3:1276-1294
    18129 
    18130 > name H48 #*.5/3:1295-1298|#*.5/3:1642-1646
    18131 
    18132 > name H49 #*.5/3:1303-1306|#*.5/3:1622-1625
    18133 
    18134 > name H50 #*.5/3:1314-1338
    18135 
    18136 > name H51 #*.5/3:1345-1348|#*.5/3:1598-1601
    18137 
    18138 > name H52 #*.5/3:1350-1381
    18139 
    18140 > name H53 #*.5/3:1385-1402
    18141 
    18142 > name H54 #*.5/3:1405-1417|#*.5/3:1581-1597
    18143 
    18144 > name H55 #*.5/3:1420-1424|#*.5/3:1573-1578
    18145 
    18146 > name H56 #*.5/3:1429-1444|#*.5/3:1547-1564
    18147 
    18148 > name H57 #*.5/3:1445-1466
    18149 
    18150 > name H58 #*.5/3:1467-1525
    18151 
    18152 > name H59 #*.5/3:1527-1544
    18153 
    18154 > name H60 #*.5/3:1627-1639
    18155 
    18156 > name H61 #*.5/3:1647-1669|#*.5/3:1991-2009
    18157 
    18158 > name H62 #*.5/3:1682-1706
    18159 
    18160 > name H63 #*.5/3:1707-1751
    18161 
    18162 > name H64 #*.5/3:1764-1772|#*.5/3:1979-1988
    18163 
    18164 > name H65 #*.5/3:1775-1789
    18165 
    18166 > name H66 #*.5/3:1792-1827
    18167 
    18168 > name H67 #*.5/3:1830-1833|#*.5/3:1972-1975
    18169 
    18170 > name H68 #*.5/3:1835-1905
    18171 
    18172 > name H69 #*.5/3:1906-1924
    18173 
    18174 > name H71 #*.5/3:1945-1960
    18175 
    18176 > name H72 #*.5/3:2023-2040
    18177 
    18178 > name H73 #*.5/3:2043-2057|#*.5/3:2611-2625
    18179 
    18180 > name H74 #*.5/3:2064-2075|#*.5/3:2434-2446
    18181 
    18182 > name H75 #*.5/3:2077-2090|#*.5/3:2229-2243
    18183 
    18184 > name H76 #*.5/3:2093-2110|#*.5/3:2179-2196
    18185 
    18186 > name H77 #*.5/3:2120-2124|#*.5/3:2174-2178
    18187 
    18188 > name H78 #*.5/3:2127-2161
    18189 
    18190 > name H79 #*.5/3:2200-2223
    18191 
    18192 > name H80 #*.5/3:2246-2258
    18193 
    18194 > name H81 #*.5/3:2259-2281
    18195 
    18196 > name H82 #*.5/3:2284-2285|#*.5/3:2383-2384
    18197 
    18198 > name H83 #*.5/3:2288-2295|#*.5/3:2337-2344
    18199 
    18200 > name H84 #*.5/3:2296-2322
    18201 
    18202 > name H85 #*.5/3:2323-2332
    18203 
    18204 > name H86 #*.5/3:2347-2370
    18205 
    18206 > name H87 #*.5/3:2372-2381
    18207 
    18208 > name H88 #*.5/3:2395-2421
    18209 
    18210 > name H89 #*.5/3:2453-2498
    18211 
    18212 > name H90 #*.5/3:2507-2517|#*.5/3:2567-2582
    18213 
    18214 > name H91 #*.5/3:2520-2545
    18215 
    18216 > name H92 #*.5/3:2547-2561
    18217 
    18218 > name H93 #*.5/3:2588-2606
    18219 
    18220 > name H94 #*.5/3:2630-2643|#*.5/3:2771-2788
    18221 
    18222 > name H95 #*.5/3:2646-2674
    18223 
    18224 > name H96 #*.5/3:2675-2732
    18225 
    18226 > name H97 #*.5/3:2735-2769
    18227 
    18228 > name H98 #*.5/3:2791-2805
    18229 
    18230 > name H99 #*.5/3:2811-2814|#*.5/3:2886-2889
    18231 
    18232 > name H100 #*.5/3:2815-2831
    18233 
    18234 executed 70S_assign.cxc 
    18235 
    18236 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    18237 
    18238 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    18239 
    18240 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    18241 
    18242 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    18243 
    18244 > alias licorice car style protein modeh default arrows f xsect oval width 1
    18245 > thick 1;
    18246 
    18247 > dssp
    18248 
    18249 > windowsize 1000 1000
    18250 
    18251 > set bgColor white
    18252 
    18253 > lighting full
    18254 
    18255 > set silhouettes true
    18256 
    18257 > set silhouetteWidth 1.7
    18258 
    18259 > set silhouettes true
    18260 
    18261 > set silhouetteDepthJump 0.02
    18262 
    18263 > cartoon style width 2.5
    18264 
    18265 > size atomRadius 2
    18266 
    18267 Changed 1614330 atom radii 
    18268 
    18269 > nucleotides fill
    18270 
    18271 > size ions atomRadius 1.6
    18272 
    18273 Changed 31 atom radii 
    18274 
    18275 > size stickRadius 0.1
    18276 
    18277 Changed 1744812 bond radii 
    18278 
    18279 > style stick ringFill thin
    18280 
    18281 Changed 1614330 atom styles, 122200 residue ring styles 
    18282 
    18283 > show ribbons
    18284 
    18285 > hide H
    18286 
    18287 > hide :HOH
    18288 
    18289 > hide target a
    18290 
    18291 > show nucleic target a
    18292 
    18293 > show drugs target a
    18294 
    18295 > style drugs ball
    18296 
    18297 Changed 106 atom styles 
    18298 
    18299 > nucrib
    18300 
    18301 > graphics selection color black
    18302 
    18303 > volume emmaps style surface step 1 level 4
    18304 
    18305 > surface dust emmaps size 3
    18306 
    18307 > volume surfaceSmoothing true
    18308 
    18309 > cartoon tether trna shape cone opacity 1
    18310 
    18311 > dssp
    18312 
    18313 executed 70S_display.cxc 
    18314 
    18315 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    18316 
    18317 > color name efg-t 100,0,0,50
    18318 
    18319 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    18320 
    18321  
    18322 
    18323 > color name sw1-t 100,92,0,50
    18324 
    18325 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    18326 
    18327  
    18328 
    18329 > color name sw2-t 68,81,0,50
    18330 
    18331 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    18332 
    18333  
    18334 
    18335 > color name pl-t 23,59,0,50
    18336 
    18337 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    18338 
    18339  
    18340 
    18341 > color name d1-t 100,18,4,50
    18342 
    18343 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    18344 
    18345  
    18346 
    18347 > color name d2-t 100,40,4,50
    18348 
    18349 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    18350 
    18351  
    18352 
    18353 > color name d3-t 100,27,36,50
    18354 
    18355 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    18356 
    18357  
    18358 
    18359 > color name d4-t 80,0,23,50
    18360 
    18361 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    18362 
    18363  
    18364 
    18365 > color name d5-t 100,60,4,50
    18366 
    18367 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    18368 
    18369  
    18370 
    18371 > color name fa-t 100,90,4,50
    18372 
    18373 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    18374 
    18375  
    18376 
    18377 > color name gtp-t 45,53,60,50
    18378 
    18379 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    18380 
    18381  
    18382 
    18383 > color name mg-t 1,39,16,50
    18384 
    18385 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    18386 
    18387  
    18388 
    18389 > color name spc-t 100,0,0,50
    18390 
    18391 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    18392 
    18393  
    18394 
    18395 > color name argb-t 50,0,50,50
    18396 
    18397 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    18398 
    18399  
    18400 
    18401 > color name g-1t 98,42,30,50
    18402 
    18403 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    18404 
    18405  
    18406 
    18407 > color name g-2t 95,35,25,50
    18408 
    18409 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    18410 
    18411  
    18412 
    18413 > color name g-3t 92,28,20,50
    18414 
    18415 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    18416 
    18417  
    18418 
    18419 > color name g-4t 89,21,15,50
    18420 
    18421 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    18422 
    18423  
    18424 
    18425 > color name g-5t 86,14,10,50
    18426 
    18427 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    18428 
    18429  
    18430 
    18431 > color name g-6t 83,7,5,50
    18432 
    18433 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    18434 
    18435  
    18436 
    18437 > color name g-7t 80,0,0,50
    18438 
    18439 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    18440 
    18441  
    18442 
    18443 > color name p-t 44,59,2,50
    18444 
    18445 Color 'p-t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    18446 
    18447  
    18448 
    18449 > color name p-c 44,59,2,100
    18450 
    18451 Color 'p-c' is opaque: rgb(44%, 59%, 2%) hex: #709605
    18452 
    18453  
    18454 
    18455 > color name p-1t 4,34,1,50
    18456 
    18457 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    18458 
    18459  
    18460 
    18461 > color name p-2t 12,39,1,50
    18462 
    18463 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    18464 
    18465  
    18466 
    18467 > color name p-3t 20,44,1,50
    18468 
    18469 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    18470 
    18471  
    18472 
    18473 > color name p-4t 28,49,1,50
    18474 
    18475 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    18476 
    18477  
    18478 
    18479 > color name p-5t 36,54,2,50
    18480 
    18481 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    18482 
    18483  
    18484 
    18485 > color name p-6t 44,59,2,50
    18486 
    18487 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    18488 
    18489  
    18490 
    18491 > color name p-7t 52,64,2,50
    18492 
    18493 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    18494 
    18495  
    18496 
    18497 > color name p-8t 60,69,2,50
    18498 
    18499 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    18500 
    18501  
    18502 
    18503 > color name p-9t 68,74,3,50
    18504 
    18505 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    18506 
    18507  
    18508 
    18509 > color name p-10t 76,79,3,50
    18510 
    18511 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    18512 
    18513  
    18514 
    18515 > color name p-11t 84,84,3,50
    18516 
    18517 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    18518 
    18519  
    18520 
    18521 > color name d-t 100,65,4,50
    18522 
    18523 Color 'd-t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    18524 
    18525  
    18526 
    18527 > color name d-c 100,65,4,100
    18528 
    18529 Color 'd-c' is opaque: rgb(100%, 65%, 4%) hex: #ffa60a
    18530 
    18531  
    18532 
    18533 > color name d-1t 100,100,4,50
    18534 
    18535 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    18536 
    18537  
    18538 
    18539 > color name d-2t 100,93,4,50
    18540 
    18541 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    18542 
    18543  
    18544 
    18545 > color name d-3t 100,86,4,50
    18546 
    18547 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    18548 
    18549  
    18550 
    18551 > color name d-4t 100,79,4,50
    18552 
    18553 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    18554 
    18555  
    18556 
    18557 > color name d-5t 100,72,4,50
    18558 
    18559 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    18560 
    18561  
    18562 
    18563 > color name d-6t 100,65,4,50
    18564 
    18565 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    18566 
    18567  
    18568 
    18569 > color name d-7t 100,58,4,50
    18570 
    18571 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    18572 
    18573  
    18574 
    18575 > color name d-8t 100,51,4,50
    18576 
    18577 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    18578 
    18579  
    18580 
    18581 > color name d-9t 100,44,4,50
    18582 
    18583 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    18584 
    18585  
    18586 
    18587 > color name d-10t 100,37,4,50
    18588 
    18589 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    18590 
    18591  
    18592 
    18593 > color name d-11t 100,30,4,50
    18594 
    18595 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    18596 
    18597  
    18598 
    18599 > color name m-t 95,43,62,50
    18600 
    18601 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    18602 
    18603  
    18604 
    18605 > color name m-c 95,43,62,100
    18606 
    18607 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    18608 
    18609  
    18610 
    18611 > color name m-1t 100,80,90,50
    18612 
    18613 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    18614 
    18615  
    18616 
    18617 > color name m-2t 98,76,87,50
    18618 
    18619 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    18620 
    18621  
    18622 
    18623 > color name m-3t 96,72,84,50
    18624 
    18625 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    18626 
    18627  
    18628 
    18629 > color name m-4t 94,68,81,50
    18630 
    18631 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    18632 
    18633  
    18634 
    18635 > color name m-5t 92,64,78,50
    18636 
    18637 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    18638 
    18639  
    18640 
    18641 > color name m-6t 90,60,75,50
    18642 
    18643 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    18644 
    18645  
    18646 
    18647 > color name m-7t 88,56,72,50
    18648 
    18649 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    18650 
    18651  
    18652 
    18653 > color name m-8t 86,52,69,50
    18654 
    18655 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    18656 
    18657  
    18658 
    18659 > color name m-9t 84,48,66,50
    18660 
    18661 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    18662 
    18663  
    18664 
    18665 > color name m-10t 82,44,63,50
    18666 
    18667 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    18668 
    18669  
    18670 
    18671 > color name m-11t 80,40,60,50
    18672 
    18673 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    18674 
    18675  
    18676 
    18677 > color name head-t 68,58,68,50
    18678 
    18679 Color 'head-t' is 50% transparent: rgba(68%, 58%, 68%, 50%) hex: #ad94ad80
    18680 
    18681  
    18682 
    18683 > color name head-c 68,58,68,100
    18684 
    18685 Color 'head-c' is opaque: rgb(68%, 58%, 68%) hex: #ad94ad
    18686 
    18687  
    18688 
    18689 > color name headfa-t 54,41,54,50
    18690 
    18691 Color 'headfa-t' is 50% transparent: rgba(54%, 41%, 54%, 50%) hex: #8a698a80
    18692 
    18693  
    18694 
    18695 > color name headblue-t 59,78,94,50
    18696 
    18697 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    18698 
    18699  
    18700 
    18701 > color name headh1-t 41,64,100,50
    18702 
    18703 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    18704 
    18705  
    18706 
    18707 > color name headh2-t 50,70,100,50
    18708 
    18709 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    18710 
    18711  
    18712 
    18713 > color name headgray-t 60,60,60,50
    18714 
    18715 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    18716 
    18717  
    18718 
    18719 > color name darkhead-s 54,41,54,100
    18720 
    18721 Color 'darkhead-s' is opaque: rgb(54%, 41%, 54%) hex: #8a698a
    18722 
    18723  
    18724 
    18725 > color name bodywhite-t 90,90,90,50
    18726 
    18727 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    18728 #e6e6e680
    18729 
    18730  
    18731 
    18732 > color name rps-t 75,88,93,50
    18733 
    18734 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    18735 
    18736  
    18737 
    18738 > color name ssu-t 69,79,82,50
    18739 
    18740 Color 'ssu-t' is 50% transparent: rgba(69%, 79%, 82%, 50%) hex: #b0c9d180
    18741 
    18742  
    18743 
    18744 > color name ssu-c 69,79,82,100
    18745 
    18746 Color 'ssu-c' is opaque: rgb(69%, 79%, 82%) hex: #b0c9d1
    18747 
    18748  
    18749 
    18750 > color name h18-t 31,59,68,50
    18751 
    18752 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    18753 
    18754  
    18755 
    18756 > color name h18-c 31,59,68,100
    18757 
    18758 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    18759 
    18760  
    18761 
    18762 > color name h23-t 40,61,80,50
    18763 
    18764 Color 'h23-t' is 50% transparent: rgba(40%, 61%, 80%, 50%) hex: #669ccc80
    18765 
    18766  
    18767 
    18768 > color name h23-c 40,61,80,100
    18769 
    18770 Color 'h23-c' is opaque: rgb(40%, 61%, 80%) hex: #669ccc
    18771 
    18772  
    18773 
    18774 > color name h24-t 50,70,90,50
    18775 
    18776 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    18777 
    18778  
    18779 
    18780 > color name h24-c 50,70,90,100
    18781 
    18782 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    18783 
    18784  
    18785 
    18786 > color name h28-t 21,27,56,50
    18787 
    18788 Color 'h28-t' is 50% transparent: rgba(21%, 27%, 56%, 50%) hex: #36458f80
    18789 
    18790  
    18791 
    18792 > color name h28-c 21,27,56,100
    18793 
    18794 Color 'h28-c' is opaque: rgb(21%, 27%, 56%) hex: #36458f
    18795 
    18796  
    18797 
    18798 > color name h29-t 80,69,92,50
    18799 
    18800 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    18801 
    18802  
    18803 
    18804 > color name h29-c 80,69,92,100
    18805 
    18806 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    18807 
    18808  
    18809 
    18810 > color name h30-t 40,40,59,50
    18811 
    18812 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    18813 
    18814  
    18815 
    18816 > color name h30-c 40,40,59,100
    18817 
    18818 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    18819 
    18820  
    18821 
    18822 > color name h31-t 45,35,55,50
    18823 
    18824 Color 'h31-t' is 50% transparent: rgba(45%, 35%, 55%, 50%) hex: #73598c80
    18825 
    18826  
    18827 
    18828 > color name h31-c 45,35,55,100
    18829 
    18830 Color 'h31-c' is opaque: rgb(45%, 35%, 55%) hex: #73598c
    18831 
    18832  
    18833 
    18834 > color name h34-t 59,35,59,50
    18835 
    18836 Color 'h34-t' is 50% transparent: rgba(59%, 35%, 59%, 50%) hex: #96599680
    18837 
    18838  
    18839 
    18840 > color name h34-c 59,35,59,100
    18841 
    18842 Color 'h34-c' is opaque: rgb(59%, 35%, 59%) hex: #965996
    18843 
    18844  
    18845 
    18846 > color name h35-t 50,22,45,50
    18847 
    18848 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    18849 
    18850  
    18851 
    18852 > color name h35-c 50,22,45,100
    18853 
    18854 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    18855 
    18856  
    18857 
    18858 > color name h44-t 32,54,70,50
    18859 
    18860 Color 'h44-t' is 50% transparent: rgba(32%, 54%, 70%, 50%) hex: #528ab380
    18861 
    18862  
    18863 
    18864 > color name h44-c 32,54,70,100
    18865 
    18866 Color 'h44-c' is opaque: rgb(32%, 54%, 70%) hex: #528ab3
    18867 
    18868  
    18869 
    18870 > color name aploop-t 27,0,50,50
    18871 
    18872 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    18873 
    18874  
    18875 
    18876 > color name term16-t 40,64,64,50
    18877 
    18878 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    18879 
    18880  
    18881 
    18882 > color name uS3-t 64,41,82,50
    18883 
    18884 Color 'uS3-t' is 50% transparent: rgba(64%, 41%, 82%, 50%) hex: #a369d180
    18885 
    18886  
    18887 
    18888 > color name uS5-t 0,50,45,50
    18889 
    18890 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    18891 
    18892  
    18893 
    18894 > color name gray-t 70,70,70,50
    18895 
    18896 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    18897 
    18898  
    18899 
    18900 > color name hx84-t 50,50,50,50
    18901 
    18902 Color 'hx84-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    18903 
    18904  
    18905 
    18906 > color name hx84-c 50,50,50,100
    18907 
    18908 Color 'hx84-c' is opaque: gray(50%) hex: #808080
    18909 
    18910  
    18911 
    18912 > color name hx84-dt 30,30,30,50
    18913 
    18914 Color 'hx84-dt' is 50% transparent: rgba(30%, 30%, 30%, 50%) hex: #4d4d4d80
    18915 
    18916  
    18917 
    18918 > color name hx84-dc 30,30,30,100
    18919 
    18920 Color 'hx84-dc' is opaque: gray(30%) hex: #4d4d4d
    18921 
    18922  
    18923 
    18924 > color name hx68-t 50,50,50,50
    18925 
    18926 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    18927 
    18928  
    18929 
    18930 > color name hx68-c 50,50,50,100
    18931 
    18932 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    18933 
    18934  
    18935 
    18936 > color name hx69-t 40,40,40,50
    18937 
    18938 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    18939 
    18940  
    18941 
    18942 > color name hx69-c 40,40,40,100
    18943 
    18944 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    18945 
    18946  
    18947 
    18948 > color name hx38-t 34,42,36,50
    18949 
    18950 Color 'hx38-t' is 50% transparent: rgba(34%, 42%, 36%, 50%) hex: #576b5c80
    18951 
    18952  
    18953 
    18954 > color name hx38-c 34,42,36,100
    18955 
    18956 Color 'hx38-c' is opaque: rgb(34%, 42%, 36%) hex: #576b5c
    18957 
    18958  
    18959 
    18960 > color name hx38-dt 34,42,36,50
    18961 
    18962 Color 'hx38-dt' is 50% transparent: rgba(34%, 42%, 36%, 50%) hex: #576b5c80
    18963 
    18964  
    18965 
    18966 > color name hx38-dc 34,42,36,100
    18967 
    18968 Color 'hx38-dc' is opaque: rgb(34%, 42%, 36%) hex: #576b5c
    18969 
    18970  
    18971 
    18972 > color name ul5-t 55,62,67,50
    18973 
    18974 Color 'ul5-t' is 50% transparent: rgba(55%, 62%, 67%, 50%) hex: #8c9eab80
    18975 
    18976  
    18977 
    18978 > color name ul5-c 55,62,67,100
    18979 
    18980 Color 'ul5-c' is opaque: rgb(55%, 62%, 67%) hex: #8c9eab
    18981 
    18982  
    18983 
    18984 > color name ul5-dt 38,47,52,50
    18985 
    18986 Color 'ul5-dt' is 50% transparent: rgba(38%, 47%, 52%, 50%) hex: #61788580
    18987 
    18988  
    18989 
    18990 > color name ul5-dc 38,47,52,100
    18991 
    18992 Color 'ul5-dc' is opaque: rgb(38%, 47%, 52%) hex: #617885
    18993 
    18994  
    18995 
    18996 > color name ul16-t 70,70,70,50
    18997 
    18998 Color 'ul16-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    18999 
    19000  
    19001 
    19002 > color name ul16-c 70,70,70,100
    19003 
    19004 Color 'ul16-c' is opaque: gray(70%) hex: #b3b3b3
    19005 
    19006  
    19007 
    19008 > color name srl-t 50,50,50,50
    19009 
    19010 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    19011 
    19012  
    19013 
    19014 > color name srl-t 50,50,50,100
    19015 
    19016 Color 'srl-t' is opaque: gray(50%) hex: #808080
    19017 
    19018  
    19019 
    19020 > color name highlight-t 92,78,8,50
    19021 
    19022 Color 'highlight-t' is 50% transparent: rgba(92%, 78%, 8%, 50%) hex: #ebc71480
    19023 
    19024  
    19025 
    19026 > color name highlight-c 92,78,8,100
    19027 
    19028 Color 'highlight-c' is opaque: rgb(92%, 78%, 8%) hex: #ebc714
    19029 
    19030  
    19031 
    19032 > color name tomato-t 100,39,28,50
    19033 
    19034 Color 'tomato-t' is 50% transparent: rgba(100%, 39%, 28%, 50%) hex: #ff634780
    19035 
    19036  
    19037 
    19038 > color name tomato-c 100,39,28,100
    19039 
    19040 Color 'tomato-c' is opaque: rgb(100%, 39%, 28%) hex: #ff6347
    19041 
    19042  
    19043 
    19044 > color name lightgrayt 83,83,83,50
    19045 
    19046 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    19047 
    19048  
    19049 
    19050 > color name silvert 75,75,75,50
    19051 
    19052 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    19053 
    19054  
    19055 
    19056 > color name grayt 50,50,50,50
    19057 
    19058 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    19059 
    19060  
    19061 
    19062 > color name lightcyant 88,100,100,50
    19063 
    19064 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    19065 #e0ffff80
    19066 
    19067  
    19068 
    19069 > color name yellowt 100,90,0,50
    19070 
    19071 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    19072 
    19073  
    19074 
    19075 > color name deeppinkt 100,8,58,50
    19076 
    19077 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    19078 
    19079  
    19080 
    19081 > color name oranget 100,65,0,50
    19082 
    19083 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    19084 
    19085  
    19086 
    19087 > color name yellowgreent 60,80,20,50
    19088 
    19089 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    19090 #99cc3380
    19091 
    19092  
    19093 
    19094 > color name darkmagentat 54,0,54,50
    19095 
    19096 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    19097 #8a008a80
    19098 
    19099  
    19100 
    19101 > color name orchidt 86,44,84,50
    19102 
    19103 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    19104 
    19105  
    19106 
    19107 > color name paleturquoiset 69,93,93,50
    19108 
    19109 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    19110 #b0eded80
    19111 
    19112  
    19113 
    19114 > color name pinkt 100,75,80,50
    19115 
    19116 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    19117 
    19118  
    19119 
    19120 > color name darkgreent 0,39,0,50
    19121 
    19122 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    19123 
    19124  
    19125 
    19126 > color name limegreent 20,80,20,50
    19127 
    19128 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    19129 
    19130  
    19131 
    19132 > color name turquoiset 25,88,82,50
    19133 
    19134 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    19135 
    19136  
    19137 
    19138 > color name tealt 0,50,50,50
    19139 
    19140 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    19141 
    19142  
    19143 
    19144 > color name darkoranget 100,50,0,50
    19145 
    19146 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    19147 #ff800080
    19148 
    19149  
    19150 
    19151 > color name lightyellowt 100,100,50,50
    19152 
    19153 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    19154 #ffff8080
    19155 
    19156  
    19157 
    19158 > color name goldt 100,75,0,50
    19159 
    19160 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    19161 
    19162  
    19163 
    19164 > color name plumt 87,63,87,50
    19165 
    19166 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    19167 
    19168  
    19169 
    19170 > color name ssubluet 68,86,90,50
    19171 
    19172 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    19173 
    19174  
    19175 
    19176 > color name p-prect 10,41,0,50
    19177 
    19178 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    19179 
    19180  
    19181 
    19182 > color name p-h2t 23,59,0,50
    19183 
    19184 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    19185 
    19186  
    19187 
    19188 > color name p-h1t 40,73,0,50
    19189 
    19190 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    19191 
    19192  
    19193 
    19194 > color name p-h1c 40,73,0,100
    19195 
    19196 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    19197 
    19198  
    19199 
    19200 > color name p-spct 68,81,0,50
    19201 
    19202 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    19203 
    19204  
    19205 
    19206 > color name p-spcc 68,81,0,100
    19207 
    19208 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    19209 
    19210  
    19211 
    19212 > color name p-fat 82,92,0,50
    19213 
    19214 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    19215 
    19216  
    19217 
    19218 > color name p-postt 100,92,0,50
    19219 
    19220 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    19221 
    19222  
    19223 
    19224 > color name d-t 100,80,4,50
    19225 
    19226 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    19227 
    19228  
    19229 
    19230 > color name d-prect 95,100,50,50
    19231 
    19232 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    19233 
    19234  
    19235 
    19236 > color name d-h2t 100,90,4,50
    19237 
    19238 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    19239 
    19240  
    19241 
    19242 > color name d-h1t 100,80,4,50
    19243 
    19244 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    19245 
    19246  
    19247 
    19248 > color name d-spct 100,70,4,50
    19249 
    19250 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    19251 
    19252  
    19253 
    19254 > color name d-fat 100,55,4,50
    19255 
    19256 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    19257 
    19258  
    19259 
    19260 > color name d-fac 100,55,4,100
    19261 
    19262 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    19263 
    19264  
    19265 
    19266 > color name d-postt 100,40,4,50
    19267 
    19268 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    19269 
    19270  
    19271 
    19272 > color name m-t 95,43,62,50
    19273 
    19274 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    19275 
    19276  
    19277 
    19278 > color name m-prect 100,85,95,50
    19279 
    19280 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    19281 
    19282  
    19283 
    19284 > color name m-h2t 100,85,95,50
    19285 
    19286 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    19287 
    19288  
    19289 
    19290 > color name m-h1t 100,75,95,50
    19291 
    19292 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    19293 
    19294  
    19295 
    19296 > color name m-spct 89,63,75,50
    19297 
    19298 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    19299 
    19300  
    19301 
    19302 > color name m-fat 95,51,75,50
    19303 
    19304 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    19305 
    19306  
    19307 
    19308 > color name m-fac 95,51,75,100
    19309 
    19310 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    19311 
    19312  
    19313 
    19314 > color name m-postt 95,43,62,50
    19315 
    19316 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    19317 
    19318  
    19319 executed 70S_colors.cxc 
    19320 
    19321 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    19322 
    19323 > color 100,100,100,50
    19324 
    19325 > color lsu silvert
    19326 
    19327 > color /3 lightgrayt
    19328 
    19329 > color /5 lightgrayt
    19330 
    19331 > color ssu ssu-t
    19332 
    19333 > color head head-t
    19334 
    19335 > color efg efg-t
    19336 
    19337 > color dt d-t
    19338 
    19339 > color pt p-t
    19340 
    19341 > color pep p-t
    19342 
    19343 > color mrna m-t
    19344 
    19345 executed 70S_colorstandard.cxc 
    19346 
    19347 > windowsize 1000 1000
    19348 
    19349 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    19350 
    19351 > color h18 h18-t
    19352 
    19353 > color h23 h23-t
    19354 
    19355 > color h24 h24-t
    19356 
    19357 > color h28 h28-t
    19358 
    19359 > color h29 h29-t
    19360 
    19361 > color h30 h30-t
    19362 
    19363 > color h31 h31-t
    19364 
    19365 > color h34 h34-t
    19366 
    19367 > color h35 h35-t
    19368 
    19369 > color h36 h36-t
    19370 
    19371 > color h44 h44-t
    19372 
    19373 > color H69 hx69-t
    19374 
    19375 executed 70S_color_helices.cxc 
    19376 
    19377 > color h30|h36|h35 head-t
    19378 
    19379 > view dc3
    19380 
    19381 > surface cap true
    19382 
    19383 > color zone #12.1 near #12.3,5 distance 5
    19384 
    19385 > color zone #13.1 near #13.3,5 distance 5
    19386 
    19387 > color zone #14.1 near #14.3,5 distance 5
    19388 
    19389 > color zone #30.1 near #30.3,5 distance 5
    19390 
    19391 > color zone #31.1 near #31.3,5 distance 5
    19392 
    19393 > color zone #32.1 near #32.3,5 distance 5
    19394 
    19395 > color zone #33.1 near #33.3,5 distance 5
    19396 
    19397 > color zone #34.1 near #34.3,5 distance 5
    19398 
    19399 > color zone #30.9 near #30.3,5 distance 5
    19400 
    19401 > color zone #31.9 near #31.3,5 distance 5
    19402 
    19403 > color zone #32.9 near #32.3,5 distance 5
    19404 
    19405 > color zone #33.9 near #33.3,5 distance 5
    19406 
    19407 > color zone #34.9 near #34.3,5 distance 5
    19408 
    19409 > color h30|h36|h35 head-c
    19410 
    19411 > color h28 h28-c
    19412 
    19413 > color h29 h29-c
    19414 
    19415 > color h34 h34-c
    19416 
    19417 > color h23 h23-c
    19418 
    19419 > color h24 h24-c
    19420 
    19421 > color h31 h31-c
    19422 
    19423 > hide #!100
    19424 
    19425 > hide #101 models
    19426 
    19427 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    19428 
    19429 > transparency #*.3 0 target abc
    19430 
    19431 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    19432 
    19433 > color h18 h18-c
    19434 
    19435 > color h23 h23-c
    19436 
    19437 > color h24 h24-c
    19438 
    19439 > color h28 h28-c
    19440 
    19441 > color h29 h29-c
    19442 
    19443 > color h30 h30-c
    19444 
    19445 > color h31 h31-c
    19446 
    19447 > color h34 h34-c
    19448 
    19449 > color h35 h35-c
    19450 
    19451 > color h44 h44-c
    19452 
    19453 > color H69 hx69-c
    19454 
    19455 executed 70S_color_helices-s.cxc 
    19456 
    19457 > color /v d-c
    19458 
    19459 > color /y p-c
    19460 
    19461 > color /w m-c
    19462 
    19463 executed gtpys_dc.cxc 
    19464 
    19465 > surface cap true
    19466 
    19467 > lighting gentle
    19468 
    19469 > lighting intensity .2
    19470 
    19471 > size stickRadius 0.17
    19472 
    19473 Changed 1744812 bond radii 
    19474 
    19475 > nucribthin
    19476 
    19477 > style ringFill thin
    19478 
    19479 Changed 122200 residue ring styles 
    19480 
    19481 > graphics silhouettes true color black
    19482 
    19483 > ~select
    19484 
    19485 Nothing selected 
    19486 
    19487 > ~select
    19488 
    19489 Nothing selected 
    19490 
    19491 > ~ribbon
    19492 
    19493 > ~display
    19494 
    19495 > ribbon
    19496 
    19497 > ~ribbon mrna
    19498 
    19499 > display mrna
    19500 
    19501 > display antiplus
    19502 
    19503 > display /x:505-514,584
    19504 
    19505 > display /6:1492,1493,530,532,1054,1400,1397
    19506 
    19507 > display /3:1913
    19508 
    19509 > display #*.3/L:44
    19510 
    19511 > hide models
    19512 
    19513 > show #31.3,5 models
    19514 
    19515 > view dc1
    19516 
    19517 > windowsize 1000 1000
    19518 
    19519 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    19520 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19521 
    19522 > view dc2
    19523 
    19524 > windowsize 1000 1000
    19525 
    19526 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    19527 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19528 
    19529 > hide models
    19530 
    19531 > show #32.3,5 models
    19532 
    19533 > windowsize 1000 1000
    19534 
    19535 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    19536 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19537 
    19538 > view dc2
    19539 
    19540 > windowsize 1000 1000
    19541 
    19542 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    19543 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19544 
    19545 > hide models
    19546 
    19547 > show #12.3,5 models
    19548 
    19549 > view dc1
    19550 
    19551 > windowsize 1000 1000
    19552 
    19553 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    19554 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19555 
    19556 > view dc2
    19557 
    19558 > windowsize 1000 1000
    19559 
    19560 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    19561 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19562 
    19563 > hide models
    19564 
    19565 > show #33.3,5 models
    19566 
    19567 > view dc1
    19568 
    19569 > windowsize 1000 1000
    19570 
    19571 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    19572 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19573 
    19574 > view dc2
    19575 
    19576 > windowsize 1000 1000
    19577 
    19578 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    19579 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19580 
    19581 > hide models
    19582 
    19583 > show #34.3,5 models
    19584 
    19585 > view dc1
    19586 
    19587 > windowsize 1000 1000
    19588 
    19589 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    19590 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19591 
    19592 > view dc2
    19593 
    19594 > windowsize 1000 1000
    19595 
    19596 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    19597 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19598 
    19599 > hide models
    19600 
    19601 > show #13.3,5 models
    19602 
    19603 > view dc1
    19604 
    19605 > windowsize 1000 1000
    19606 
    19607 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    19608 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19609 
    19610 > view dc2
    19611 
    19612 > windowsize 1000 1000
    19613 
    19614 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    19615 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19616 
    19617 > hide models
    19618 
    19619 > show #14.3,5 models
    19620 
    19621 > ~display #14.3/w:38,49
    19622 
    19623 > view dc1
    19624 
    19625 > windowsize 1000 1000
    19626 
    19627 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    19628 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19629 
    19630 > view dc2
    19631 
    19632 > windowsize 1000 1000
    19633 
    19634 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    19635 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19636 
    19637 > graphics silhouettes true color 25,25,25,15
    19638 
    19639 > style ringFill thick
    19640 
    19641 Changed 122200 residue ring styles 
    19642 
    19643 > ~cartoon /6/3
    19644 
    19645 > display /6/3
    19646 
    19647 > ~cartoon trna
    19648 
    19649 > display trna
    19650 
    19651 > volume emmaps style surface step 1 level 3
    19652 
    19653 > surface dust emmaps size 2
    19654 
    19655 > volume emmaps surfaceSmoothing true
    19656 
    19657 > view dc3
    19658 
    19659 > hide models
    19660 
    19661 > show #30 models
    19662 
    19663 > select #30.3
    19664 
    19665 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    19666 
    19667 > hide #30.9 models
    19668 
    19669 > windowsize 1000 1000
    19670 
    19671 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    19672 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19673 
    19674 > hide models
    19675 
    19676 > show #31 models
    19677 
    19678 > select #31.3
    19679 
    19680 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    19681 
    19682 > hide #31.9 models
    19683 
    19684 > windowsize 1000 1000
    19685 
    19686 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    19687 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19688 
    19689 > hide models
    19690 
    19691 > show #32 models
    19692 
    19693 > select #32.3
    19694 
    19695 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    19696 
    19697 > hide #32.9 models
    19698 
    19699 > windowsize 1000 1000
    19700 
    19701 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    19702 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19703 
    19704 > hide models
    19705 
    19706 > show #12 models
    19707 
    19708 > select #12.3
    19709 
    19710 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    19711 
    19712 > windowsize 1000 1000
    19713 
    19714 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    19715 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19716 
    19717 > hide models
    19718 
    19719 > show #33 models
    19720 
    19721 > select #33.3
    19722 
    19723 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    19724 
    19725 > hide #33.9 models
    19726 
    19727 > windowsize 1000 1000
    19728 
    19729 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    19730 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19731 
    19732 > hide models
    19733 
    19734 > show #34 models
    19735 
    19736 > select #34.3
    19737 
    19738 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    19739 
    19740 > hide #34.9 models
    19741 
    19742 > windowsize 1000 1000
    19743 
    19744 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    19745 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19746 
    19747 > hide models
    19748 
    19749 > show #13 models
    19750 
    19751 > select #13.3
    19752 
    19753 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    19754 
    19755 > windowsize 1000 1000
    19756 
    19757 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    19758 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19759 
    19760 > hide models
    19761 
    19762 > show #14 models
    19763 
    19764 > ~display #14.3/w:38,49
    19765 
    19766 > select #14.3
    19767 
    19768 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    19769 
    19770 > windowsize 1000 1000
    19771 
    19772 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    19773 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19774 
    19775 > volume emmaps style surface step 1 level 8
    19776 
    19777 > surface dust emmaps size 2
    19778 
    19779 > volume emmaps surfaceSmoothing true
    19780 
    19781 > hide models
    19782 
    19783 > show #30.3,5,9 models
    19784 
    19785 > select #30.3
    19786 
    19787 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    19788 
    19789 > windowsize 1000 1000
    19790 
    19791 > save
    19792 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1a-FR.tif
    19793 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19794 
    19795 > hide models
    19796 
    19797 > show #31.3,5,9 models
    19798 
    19799 > select #31.3
    19800 
    19801 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    19802 
    19803 > windowsize 1000 1000
    19804 
    19805 > save
    19806 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1b-FR.tif
    19807 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19808 
    19809 > hide models
    19810 
    19811 > show #32.3,5,9 models
    19812 
    19813 > select #32.3
    19814 
    19815 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    19816 
    19817 > windowsize 1000 1000
    19818 
    19819 > save
    19820 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1c-FR.tif
    19821 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19822 
    19823 > hide models
    19824 
    19825 > show #33.3,5,9 models
    19826 
    19827 > select #33.3
    19828 
    19829 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    19830 
    19831 > windowsize 1000 1000
    19832 
    19833 > save
    19834 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysI1a-FR.tif
    19835 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    19836 
    19837 > hide models
    19838 
    19839 > show #34.3,5,9 models
    19840 
    19841 > select #34.3
    19842 
    19843 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    19844 
    19845 > windowsize 1000 1000
    19846 
    19847 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_I1bys-
    19848 > FR.tif format tiff width 1000 height 1000 supersample 20
    19849 > transparentBackground true
    19850 
    19851 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    19852 
    19853 ——— End of log from Tue Jul 18 13:01:32 2023 ———
    19854 
    19855 opened ChimeraX session 
    19856 
    19857 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    19858 
    19859 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    19860 
    19861 > name atomods #*.3|#*.5
    19862 
    19863 > name emmaps #*.1|#*.7|#*.8|#*.9
    19864 
    19865 > name lsu #*.5
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    19867 > name lsumap #*.8
    19868 
    19869 > name ssu #*.3
    19870 
    19871 > name ssumap #*.7
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    19873 > name ligmap #*.9
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    19875 > name rna /y,v,w,3,6,5
    19876 
    19877 > name r23s /3
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    19879 > name r16s /6
    19880 
    19881 > name r5s /5
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    19883 > name pt /y
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    19885 > name dt /v
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    19887 > name efg /x
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    19889 > name pep /p
    19890 
    19891 > name mrna /w
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    19893 > name GSP :GSP
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    19895 > name GDP :GDP
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    19897 > name GTP :GTP
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    19899 > name ntide :GTP|:GDP|:GSP
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    19928 
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    19940 
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    19942 
    19943 > name aarm /y,v:26-43
    19944 
    19945 > name varm /y,v:44-48
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    20349 > name H89 #*.5/3:2453-2498
    20350 
    20351 > name H90 #*.5/3:2507-2517|#*.5/3:2567-2582
    20352 
    20353 > name H91 #*.5/3:2520-2545
    20354 
    20355 > name H92 #*.5/3:2547-2561
    20356 
    20357 > name H93 #*.5/3:2588-2606
    20358 
    20359 > name H94 #*.5/3:2630-2643|#*.5/3:2771-2788
    20360 
    20361 > name H95 #*.5/3:2646-2674
    20362 
    20363 > name H96 #*.5/3:2675-2732
    20364 
    20365 > name H97 #*.5/3:2735-2769
    20366 
    20367 > name H98 #*.5/3:2791-2805
    20368 
    20369 > name H99 #*.5/3:2811-2814|#*.5/3:2886-2889
    20370 
    20371 > name H100 #*.5/3:2815-2831
    20372 
    20373 executed 70S_assign.cxc 
    20374 
    20375 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_display.cxc
    20376 
    20377 > alias nucrib cartoon style nucleic xsect oval width 1.6 thick 1.6;
    20378 
    20379 > alias nucribthin cartoon style nucleic xsect oval width 1.2 thick 1.2;
    20380 
    20381 > alias cylinders cartoon style protein modeh tube rad 2 sides 24;
    20382 
    20383 > alias licorice car style protein modeh default arrows f xsect oval width 1
    20384 > thick 1;
    20385 
    20386 > dssp
    20387 
    20388 > windowsize 1000 1000
    20389 
    20390 > set bgColor white
    20391 
    20392 > lighting full
    20393 
    20394 > set silhouettes true
    20395 
    20396 > set silhouetteWidth 1.7
    20397 
    20398 > set silhouettes true
    20399 
    20400 > set silhouetteDepthJump 0.02
    20401 
    20402 > cartoon style width 2.5
    20403 
    20404 > size atomRadius 2
    20405 
    20406 Changed 1614330 atom radii 
    20407 
    20408 > nucleotides fill
    20409 
    20410 > size ions atomRadius 1.6
    20411 
    20412 Changed 31 atom radii 
    20413 
    20414 > size stickRadius 0.1
    20415 
    20416 Changed 1744812 bond radii 
    20417 
    20418 > style stick ringFill thin
    20419 
    20420 Changed 1614330 atom styles, 122200 residue ring styles 
    20421 
    20422 > show ribbons
    20423 
    20424 > hide H
    20425 
    20426 > hide :HOH
    20427 
    20428 > hide target a
    20429 
    20430 > show nucleic target a
    20431 
    20432 > show drugs target a
    20433 
    20434 > style drugs ball
    20435 
    20436 Changed 106 atom styles 
    20437 
    20438 > graphics selection color black
    20439 
    20440 > cartoon style protein xsection round width 2 thickness 0.6
    20441 
    20442 > cartoon style modeHelix wrap
    20443 
    20444 > cartoon style sides 24
    20445 
    20446 > cartoon style strand xsection oval arrows false
    20447 
    20448 > cartoon suppressBackboneDisplay true
    20449 
    20450 > alias thinbois style ball;size ballscale 0.09; size stickradius 0.13;
    20451 
    20452 > alias thickbois style stick;size stickradius 0.4; style @P sphere;size @P
    20453 > atomRadius 1.1
    20454 
    20455 > volume emmaps style surface step 1 level 4
    20456 
    20457 > surface dust emmaps size 3
    20458 
    20459 > volume surfaceSmoothing true
    20460 
    20461 > cartoon tether trna shape cone opacity 1
    20462 
    20463 > dssp
    20464 
    20465 > thickbois
    20466 
    20467 Changed 1614330 atom styles 
    20468 Changed 1744812 bond radii 
    20469 Changed 50246 atom styles 
    20470 Changed 50246 atom radii 
    20471 executed 70S_display.cxc 
    20472 
    20473 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colors.cxc
    20474 
    20475 > color name efg-t 100,0,0,50
    20476 
    20477 Color 'efg-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    20478 
    20479  
    20480 
    20481 > color name sw1-t 100,92,0,50
    20482 
    20483 Color 'sw1-t' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    20484 
    20485  
    20486 
    20487 > color name sw2-t 68,81,0,50
    20488 
    20489 Color 'sw2-t' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    20490 
    20491  
    20492 
    20493 > color name pl-t 23,59,0,50
    20494 
    20495 Color 'pl-t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    20496 
    20497  
    20498 
    20499 > color name d1-t 100,18,4,50
    20500 
    20501 Color 'd1-t' is 50% transparent: rgba(100%, 18%, 4%, 50%) hex: #ff2e0a80
    20502 
    20503  
    20504 
    20505 > color name d2-t 100,40,4,50
    20506 
    20507 Color 'd2-t' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    20508 
    20509  
    20510 
    20511 > color name d3-t 100,27,36,50
    20512 
    20513 Color 'd3-t' is 50% transparent: rgba(100%, 27%, 36%, 50%) hex: #ff455c80
    20514 
    20515  
    20516 
    20517 > color name d4-t 80,0,23,50
    20518 
    20519 Color 'd4-t' is 50% transparent: rgba(80%, 0%, 23%, 50%) hex: #cc003b80
    20520 
    20521  
    20522 
    20523 > color name d5-t 100,60,4,50
    20524 
    20525 Color 'd5-t' is 50% transparent: rgba(100%, 60%, 4%, 50%) hex: #ff990a80
    20526 
    20527  
    20528 
    20529 > color name fa-t 100,90,4,50
    20530 
    20531 Color 'fa-t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    20532 
    20533  
    20534 
    20535 > color name gtp-t 45,53,60,50
    20536 
    20537 Color 'gtp-t' is 50% transparent: rgba(45%, 53%, 60%, 50%) hex: #73879980
    20538 
    20539  
    20540 
    20541 > color name mg-t 1,39,16,50
    20542 
    20543 Color 'mg-t' is 50% transparent: rgba(1%, 39%, 16%, 50%) hex: #03632980
    20544 
    20545  
    20546 
    20547 > color name spc-t 100,0,0,50
    20548 
    20549 Color 'spc-t' is 50% transparent: rgba(100%, 0%, 0%, 50%) hex: #ff000080
    20550 
    20551  
    20552 
    20553 > color name argb-t 50,0,50,50
    20554 
    20555 Color 'argb-t' is 50% transparent: rgba(50%, 0%, 50%, 50%) hex: #80008080
    20556 
    20557  
    20558 
    20559 > color name g-1t 98,42,30,50
    20560 
    20561 Color 'g-1t' is 50% transparent: rgba(98%, 42%, 30%, 50%) hex: #fa6b4d80
    20562 
    20563  
    20564 
    20565 > color name g-2t 95,35,25,50
    20566 
    20567 Color 'g-2t' is 50% transparent: rgba(95%, 35%, 25%, 50%) hex: #f2594080
    20568 
    20569  
    20570 
    20571 > color name g-3t 92,28,20,50
    20572 
    20573 Color 'g-3t' is 50% transparent: rgba(92%, 28%, 20%, 50%) hex: #eb473380
    20574 
    20575  
    20576 
    20577 > color name g-4t 89,21,15,50
    20578 
    20579 Color 'g-4t' is 50% transparent: rgba(89%, 21%, 15%, 50%) hex: #e3362680
    20580 
    20581  
    20582 
    20583 > color name g-5t 86,14,10,50
    20584 
    20585 Color 'g-5t' is 50% transparent: rgba(86%, 14%, 10%, 50%) hex: #db241a80
    20586 
    20587  
    20588 
    20589 > color name g-6t 83,7,5,50
    20590 
    20591 Color 'g-6t' is 50% transparent: rgba(83%, 7%, 5%, 50%) hex: #d4120d80
    20592 
    20593  
    20594 
    20595 > color name g-7t 80,0,0,50
    20596 
    20597 Color 'g-7t' is 50% transparent: rgba(80%, 0%, 0%, 50%) hex: #cc000080
    20598 
    20599  
    20600 
    20601 > color name p-t 44,59,2,50
    20602 
    20603 Color 'p-t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    20604 
    20605  
    20606 
    20607 > color name p-c 44,59,2,100
    20608 
    20609 Color 'p-c' is opaque: rgb(44%, 59%, 2%) hex: #709605
    20610 
    20611  
    20612 
    20613 > color name p-1t 4,34,1,50
    20614 
    20615 Color 'p-1t' is 50% transparent: rgba(4%, 34%, 1%, 50%) hex: #0a570380
    20616 
    20617  
    20618 
    20619 > color name p-2t 12,39,1,50
    20620 
    20621 Color 'p-2t' is 50% transparent: rgba(12%, 39%, 1%, 50%) hex: #1f630380
    20622 
    20623  
    20624 
    20625 > color name p-3t 20,44,1,50
    20626 
    20627 Color 'p-3t' is 50% transparent: rgba(20%, 44%, 1%, 50%) hex: #33700380
    20628 
    20629  
    20630 
    20631 > color name p-4t 28,49,1,50
    20632 
    20633 Color 'p-4t' is 50% transparent: rgba(28%, 49%, 1%, 50%) hex: #477d0380
    20634 
    20635  
    20636 
    20637 > color name p-5t 36,54,2,50
    20638 
    20639 Color 'p-5t' is 50% transparent: rgba(36%, 54%, 2%, 50%) hex: #5c8a0580
    20640 
    20641  
    20642 
    20643 > color name p-6t 44,59,2,50
    20644 
    20645 Color 'p-6t' is 50% transparent: rgba(44%, 59%, 2%, 50%) hex: #70960580
    20646 
    20647  
    20648 
    20649 > color name p-7t 52,64,2,50
    20650 
    20651 Color 'p-7t' is 50% transparent: rgba(52%, 64%, 2%, 50%) hex: #85a30580
    20652 
    20653  
    20654 
    20655 > color name p-8t 60,69,2,50
    20656 
    20657 Color 'p-8t' is 50% transparent: rgba(60%, 69%, 2%, 50%) hex: #99b00580
    20658 
    20659  
    20660 
    20661 > color name p-9t 68,74,3,50
    20662 
    20663 Color 'p-9t' is 50% transparent: rgba(68%, 74%, 3%, 50%) hex: #adbd0880
    20664 
    20665  
    20666 
    20667 > color name p-10t 76,79,3,50
    20668 
    20669 Color 'p-10t' is 50% transparent: rgba(76%, 79%, 3%, 50%) hex: #c2c90880
    20670 
    20671  
    20672 
    20673 > color name p-11t 84,84,3,50
    20674 
    20675 Color 'p-11t' is 50% transparent: rgba(84%, 84%, 3%, 50%) hex: #d6d60880
    20676 
    20677  
    20678 
    20679 > color name d-t 100,65,4,50
    20680 
    20681 Color 'd-t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    20682 
    20683  
    20684 
    20685 > color name d-c 100,65,4,100
    20686 
    20687 Color 'd-c' is opaque: rgb(100%, 65%, 4%) hex: #ffa60a
    20688 
    20689  
    20690 
    20691 > color name d-1t 100,100,4,50
    20692 
    20693 Color 'd-1t' is 50% transparent: rgba(100%, 100%, 4%, 50%) hex: #ffff0a80
    20694 
    20695  
    20696 
    20697 > color name d-2t 100,93,4,50
    20698 
    20699 Color 'd-2t' is 50% transparent: rgba(100%, 93%, 4%, 50%) hex: #ffed0a80
    20700 
    20701  
    20702 
    20703 > color name d-3t 100,86,4,50
    20704 
    20705 Color 'd-3t' is 50% transparent: rgba(100%, 86%, 4%, 50%) hex: #ffdb0a80
    20706 
    20707  
    20708 
    20709 > color name d-4t 100,79,4,50
    20710 
    20711 Color 'd-4t' is 50% transparent: rgba(100%, 79%, 4%, 50%) hex: #ffc90a80
    20712 
    20713  
    20714 
    20715 > color name d-5t 100,72,4,50
    20716 
    20717 Color 'd-5t' is 50% transparent: rgba(100%, 72%, 4%, 50%) hex: #ffb80a80
    20718 
    20719  
    20720 
    20721 > color name d-6t 100,65,4,50
    20722 
    20723 Color 'd-6t' is 50% transparent: rgba(100%, 65%, 4%, 50%) hex: #ffa60a80
    20724 
    20725  
    20726 
    20727 > color name d-7t 100,58,4,50
    20728 
    20729 Color 'd-7t' is 50% transparent: rgba(100%, 58%, 4%, 50%) hex: #ff940a80
    20730 
    20731  
    20732 
    20733 > color name d-8t 100,51,4,50
    20734 
    20735 Color 'd-8t' is 50% transparent: rgba(100%, 51%, 4%, 50%) hex: #ff820a80
    20736 
    20737  
    20738 
    20739 > color name d-9t 100,44,4,50
    20740 
    20741 Color 'd-9t' is 50% transparent: rgba(100%, 44%, 4%, 50%) hex: #ff700a80
    20742 
    20743  
    20744 
    20745 > color name d-10t 100,37,4,50
    20746 
    20747 Color 'd-10t' is 50% transparent: rgba(100%, 37%, 4%, 50%) hex: #ff5e0a80
    20748 
    20749  
    20750 
    20751 > color name d-11t 100,30,4,50
    20752 
    20753 Color 'd-11t' is 50% transparent: rgba(100%, 30%, 4%, 50%) hex: #ff4d0a80
    20754 
    20755  
    20756 
    20757 > color name m-t 95,43,62,50
    20758 
    20759 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    20760 
    20761  
    20762 
    20763 > color name m-c 95,43,62,100
    20764 
    20765 Color 'm-c' is opaque: rgb(95%, 43%, 62%) hex: #f26e9e
    20766 
    20767  
    20768 
    20769 > color name m-1t 100,80,90,50
    20770 
    20771 Color 'm-1t' is 50% transparent: rgba(100%, 80%, 90%, 50%) hex: #ffcce680
    20772 
    20773  
    20774 
    20775 > color name m-2t 98,76,87,50
    20776 
    20777 Color 'm-2t' is 50% transparent: rgba(98%, 76%, 87%, 50%) hex: #fac2de80
    20778 
    20779  
    20780 
    20781 > color name m-3t 96,72,84,50
    20782 
    20783 Color 'm-3t' is 50% transparent: rgba(96%, 72%, 84%, 50%) hex: #f5b8d680
    20784 
    20785  
    20786 
    20787 > color name m-4t 94,68,81,50
    20788 
    20789 Color 'm-4t' is 50% transparent: rgba(94%, 68%, 81%, 50%) hex: #f0adcf80
    20790 
    20791  
    20792 
    20793 > color name m-5t 92,64,78,50
    20794 
    20795 Color 'm-5t' is 50% transparent: rgba(92%, 64%, 78%, 50%) hex: #eba3c780
    20796 
    20797  
    20798 
    20799 > color name m-6t 90,60,75,50
    20800 
    20801 Color 'm-6t' is 50% transparent: rgba(90%, 60%, 75%, 50%) hex: #e699bf80
    20802 
    20803  
    20804 
    20805 > color name m-7t 88,56,72,50
    20806 
    20807 Color 'm-7t' is 50% transparent: rgba(88%, 56%, 72%, 50%) hex: #e08fb880
    20808 
    20809  
    20810 
    20811 > color name m-8t 86,52,69,50
    20812 
    20813 Color 'm-8t' is 50% transparent: rgba(86%, 52%, 69%, 50%) hex: #db85b080
    20814 
    20815  
    20816 
    20817 > color name m-9t 84,48,66,50
    20818 
    20819 Color 'm-9t' is 50% transparent: rgba(84%, 48%, 66%, 50%) hex: #d67aa880
    20820 
    20821  
    20822 
    20823 > color name m-10t 82,44,63,50
    20824 
    20825 Color 'm-10t' is 50% transparent: rgba(82%, 44%, 63%, 50%) hex: #d170a180
    20826 
    20827  
    20828 
    20829 > color name m-11t 80,40,60,50
    20830 
    20831 Color 'm-11t' is 50% transparent: rgba(80%, 40%, 60%, 50%) hex: #cc669980
    20832 
    20833  
    20834 
    20835 > color name head-t 82,74,84,50
    20836 
    20837 Color 'head-t' is 50% transparent: rgba(82%, 74%, 84%, 50%) hex: #d1bdd680
    20838 
    20839  
    20840 
    20841 > color name head-c 82,74,84,100
    20842 
    20843 Color 'head-c' is opaque: rgb(82%, 74%, 84%) hex: #d1bdd6
    20844 
    20845  
    20846 
    20847 > color name headfa-t 54,41,54,50
    20848 
    20849 Color 'headfa-t' is 50% transparent: rgba(54%, 41%, 54%, 50%) hex: #8a698a80
    20850 
    20851  
    20852 
    20853 > color name headblue-t 59,78,94,50
    20854 
    20855 Color 'headblue-t' is 50% transparent: rgba(59%, 78%, 94%, 50%) hex: #96c7f080
    20856 
    20857  
    20858 
    20859 > color name headh1-t 41,64,100,50
    20860 
    20861 Color 'headh1-t' is 50% transparent: rgba(41%, 64%, 100%, 50%) hex: #69a3ff80
    20862 
    20863  
    20864 
    20865 > color name headh2-t 50,70,100,50
    20866 
    20867 Color 'headh2-t' is 50% transparent: rgba(50%, 70%, 100%, 50%) hex: #80b3ff80
    20868 
    20869  
    20870 
    20871 > color name headgray-t 60,60,60,50
    20872 
    20873 Color 'headgray-t' is 50% transparent: rgba(60%, 60%, 60%, 50%) hex: #99999980
    20874 
    20875  
    20876 
    20877 > color name darkhead-s 54,41,54,100
    20878 
    20879 Color 'darkhead-s' is opaque: rgb(54%, 41%, 54%) hex: #8a698a
    20880 
    20881  
    20882 
    20883 > color name bodywhite-t 90,90,90,50
    20884 
    20885 Color 'bodywhite-t' is 50% transparent: rgba(90%, 90%, 90%, 50%) hex:
    20886 #e6e6e680
    20887 
    20888  
    20889 
    20890 > color name rps-t 75,88,93,50
    20891 
    20892 Color 'rps-t' is 50% transparent: rgba(75%, 88%, 93%, 50%) hex: #bfe0ed80
    20893 
    20894  
    20895 
    20896 > color name ssu-t 69,79,82,50
    20897 
    20898 Color 'ssu-t' is 50% transparent: rgba(69%, 79%, 82%, 50%) hex: #b0c9d180
    20899 
    20900  
    20901 
    20902 > color name ssu-c 69,79,82,100
    20903 
    20904 Color 'ssu-c' is opaque: rgb(69%, 79%, 82%) hex: #b0c9d1
    20905 
    20906  
    20907 
    20908 > color name h16-t 79,85,89,50
    20909 
    20910 Color 'h16-t' is 50% transparent: rgba(79%, 85%, 89%, 50%) hex: #c9d9e380
    20911 
    20912  
    20913 
    20914 > color name h16-c 79,85,89,100
    20915 
    20916 Color 'h16-c' is opaque: rgb(79%, 85%, 89%) hex: #c9d9e3
    20917 
    20918  
    20919 
    20920 > color name h18-t 31,59,68,50
    20921 
    20922 Color 'h18-t' is 50% transparent: rgba(31%, 59%, 68%, 50%) hex: #4f96ad80
    20923 
    20924  
    20925 
    20926 > color name h18-dt 6,47,62,50
    20927 
    20928 Color 'h18-dt' is 50% transparent: rgba(6%, 47%, 62%, 50%) hex: #0f789e80
    20929 
    20930  
    20931 
    20932 > color name h18-dc 6,47,62,100
    20933 
    20934 Color 'h18-dc' is opaque: rgb(6%, 47%, 62%) hex: #0f789e
    20935 
    20936  
    20937 
    20938 > color name h18-c 31,59,68,100
    20939 
    20940 Color 'h18-c' is opaque: rgb(31%, 59%, 68%) hex: #4f96ad
    20941 
    20942  
    20943 
    20944 > color name h23-t 40,61,80,50
    20945 
    20946 Color 'h23-t' is 50% transparent: rgba(40%, 61%, 80%, 50%) hex: #669ccc80
    20947 
    20948  
    20949 
    20950 > color name h23-c 40,61,80,100
    20951 
    20952 Color 'h23-c' is opaque: rgb(40%, 61%, 80%) hex: #669ccc
    20953 
    20954  
    20955 
    20956 > color name h24-t 50,70,90,50
    20957 
    20958 Color 'h24-t' is 50% transparent: rgba(50%, 70%, 90%, 50%) hex: #80b3e680
    20959 
    20960  
    20961 
    20962 > color name h24-c 50,70,90,100
    20963 
    20964 Color 'h24-c' is opaque: rgb(50%, 70%, 90%) hex: #80b3e6
    20965 
    20966  
    20967 
    20968 > color name h28-t 21,27,56,50
    20969 
    20970 Color 'h28-t' is 50% transparent: rgba(21%, 27%, 56%, 50%) hex: #36458f80
    20971 
    20972  
    20973 
    20974 > color name h28-c 21,27,56,100
    20975 
    20976 Color 'h28-c' is opaque: rgb(21%, 27%, 56%) hex: #36458f
    20977 
    20978  
    20979 
    20980 > color name h29-t 80,69,92,50
    20981 
    20982 Color 'h29-t' is 50% transparent: rgba(80%, 69%, 92%, 50%) hex: #ccb0eb80
    20983 
    20984  
    20985 
    20986 > color name h29-c 80,69,92,100
    20987 
    20988 Color 'h29-c' is opaque: rgb(80%, 69%, 92%) hex: #ccb0eb
    20989 
    20990  
    20991 
    20992 > color name h30-t 40,40,59,50
    20993 
    20994 Color 'h30-t' is 50% transparent: rgba(40%, 40%, 59%, 50%) hex: #66669680
    20995 
    20996  
    20997 
    20998 > color name h30-c 40,40,59,100
    20999 
    21000 Color 'h30-c' is opaque: rgb(40%, 40%, 59%) hex: #666696
    21001 
    21002  
    21003 
    21004 > color name h31-t 45,35,55,50
    21005 
    21006 Color 'h31-t' is 50% transparent: rgba(45%, 35%, 55%, 50%) hex: #73598c80
    21007 
    21008  
    21009 
    21010 > color name h31-c 45,35,55,100
    21011 
    21012 Color 'h31-c' is opaque: rgb(45%, 35%, 55%) hex: #73598c
    21013 
    21014  
    21015 
    21016 > color name h32-t 75,62,79,50
    21017 
    21018 Color 'h32-t' is 50% transparent: rgba(75%, 62%, 79%, 50%) hex: #bf9ec980
    21019 
    21020  
    21021 
    21022 > color name h32-c 75,62,79,100
    21023 
    21024 Color 'h32-c' is opaque: rgb(75%, 62%, 79%) hex: #bf9ec9
    21025 
    21026  
    21027 
    21028 > color name h33-t 88,82,90,50
    21029 
    21030 Color 'h33-t' is 50% transparent: rgba(88%, 82%, 90%, 50%) hex: #e0d1e680
    21031 
    21032  
    21033 
    21034 > color name h33-c 88,82,90,100
    21035 
    21036 Color 'h33-c' is opaque: rgb(88%, 82%, 90%) hex: #e0d1e6
    21037 
    21038  
    21039 
    21040 > color name h34-t 59,35,59,50
    21041 
    21042 Color 'h34-t' is 50% transparent: rgba(59%, 35%, 59%, 50%) hex: #96599680
    21043 
    21044  
    21045 
    21046 > color name h34-c 59,35,59,100
    21047 
    21048 Color 'h34-c' is opaque: rgb(59%, 35%, 59%) hex: #965996
    21049 
    21050  
    21051 
    21052 > color name h35-t 50,22,45,50
    21053 
    21054 Color 'h35-t' is 50% transparent: rgba(50%, 22%, 45%, 50%) hex: #80387380
    21055 
    21056  
    21057 
    21058 > color name h35-c 50,22,45,100
    21059 
    21060 Color 'h35-c' is opaque: rgb(50%, 22%, 45%) hex: #803873
    21061 
    21062  
    21063 
    21064 > color name h44-t 32,54,70,50
    21065 
    21066 Color 'h44-t' is 50% transparent: rgba(32%, 54%, 70%, 50%) hex: #528ab380
    21067 
    21068  
    21069 
    21070 > color name h44-c 32,54,70,100
    21071 
    21072 Color 'h44-c' is opaque: rgb(32%, 54%, 70%) hex: #528ab3
    21073 
    21074  
    21075 
    21076 > color name aploop-t 27,0,50,50
    21077 
    21078 Color 'aploop-t' is 50% transparent: rgba(27%, 0%, 50%, 50%) hex: #45008080
    21079 
    21080  
    21081 
    21082 > color name term16-t 40,64,64,50
    21083 
    21084 Color 'term16-t' is 50% transparent: rgba(40%, 64%, 64%, 50%) hex: #66a3a380
    21085 
    21086  
    21087 
    21088 > color name uS3-t 48,44,57,50
    21089 
    21090 Color 'uS3-t' is 50% transparent: rgba(48%, 44%, 57%, 50%) hex: #7a709180
    21091 
    21092  
    21093 
    21094 > color name uS3-c 48,44,57,100
    21095 
    21096 Color 'uS3-c' is opaque: rgb(48%, 44%, 57%) hex: #7a7091
    21097 
    21098  
    21099 
    21100 > color name uS3-dt 40,37,57,50
    21101 
    21102 Color 'uS3-dt' is 50% transparent: rgba(40%, 37%, 57%, 50%) hex: #665e9180
    21103 
    21104  
    21105 
    21106 > color name uS3-dc 40,37,57,100
    21107 
    21108 Color 'uS3-dc' is opaque: rgb(40%, 37%, 57%) hex: #665e91
    21109 
    21110  
    21111 
    21112 > color name uS5-t 0,50,45,50
    21113 
    21114 Color 'uS5-t' is 50% transparent: rgba(0%, 50%, 45%, 50%) hex: #00807380
    21115 
    21116  
    21117 
    21118 > color name gray-t 70,70,70,50
    21119 
    21120 Color 'gray-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    21121 
    21122  
    21123 
    21124 > color name hx84-t 50,50,50,50
    21125 
    21126 Color 'hx84-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    21127 
    21128  
    21129 
    21130 > color name hx84-c 50,50,50,100
    21131 
    21132 Color 'hx84-c' is opaque: gray(50%) hex: #808080
    21133 
    21134  
    21135 
    21136 > color name hx84-dt 30,30,30,50
    21137 
    21138 Color 'hx84-dt' is 50% transparent: rgba(30%, 30%, 30%, 50%) hex: #4d4d4d80
    21139 
    21140  
    21141 
    21142 > color name hx84-dc 30,30,30,100
    21143 
    21144 Color 'hx84-dc' is opaque: gray(30%) hex: #4d4d4d
    21145 
    21146  
    21147 
    21148 > color name hx68-t 50,50,50,50
    21149 
    21150 Color 'hx68-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    21151 
    21152  
    21153 
    21154 > color name hx68-c 50,50,50,100
    21155 
    21156 Color 'hx68-c' is opaque: gray(50%) hex: #808080
    21157 
    21158  
    21159 
    21160 > color name hx69-t 40,40,40,50
    21161 
    21162 Color 'hx69-t' is 50% transparent: rgba(40%, 40%, 40%, 50%) hex: #66666680
    21163 
    21164  
    21165 
    21166 > color name hx69-c 40,40,40,100
    21167 
    21168 Color 'hx69-c' is opaque: gray(40%) hex: #666666
    21169 
    21170  
    21171 
    21172 > color name hx38-t 34,42,36,50
    21173 
    21174 Color 'hx38-t' is 50% transparent: rgba(34%, 42%, 36%, 50%) hex: #576b5c80
    21175 
    21176  
    21177 
    21178 > color name hx38-c 34,42,36,100
    21179 
    21180 Color 'hx38-c' is opaque: rgb(34%, 42%, 36%) hex: #576b5c
    21181 
    21182  
    21183 
    21184 > color name hx38-dt 34,42,36,50
    21185 
    21186 Color 'hx38-dt' is 50% transparent: rgba(34%, 42%, 36%, 50%) hex: #576b5c80
    21187 
    21188  
    21189 
    21190 > color name hx38-dc 34,42,36,100
    21191 
    21192 Color 'hx38-dc' is opaque: rgb(34%, 42%, 36%) hex: #576b5c
    21193 
    21194  
    21195 
    21196 > color name ul5-t 55,62,67,50
    21197 
    21198 Color 'ul5-t' is 50% transparent: rgba(55%, 62%, 67%, 50%) hex: #8c9eab80
    21199 
    21200  
    21201 
    21202 > color name ul5-c 55,62,67,100
    21203 
    21204 Color 'ul5-c' is opaque: rgb(55%, 62%, 67%) hex: #8c9eab
    21205 
    21206  
    21207 
    21208 > color name ul5-dt 38,47,52,50
    21209 
    21210 Color 'ul5-dt' is 50% transparent: rgba(38%, 47%, 52%, 50%) hex: #61788580
    21211 
    21212  
    21213 
    21214 > color name ul5-dc 38,47,52,100
    21215 
    21216 Color 'ul5-dc' is opaque: rgb(38%, 47%, 52%) hex: #617885
    21217 
    21218  
    21219 
    21220 > color name ul16-t 70,70,70,50
    21221 
    21222 Color 'ul16-t' is 50% transparent: rgba(70%, 70%, 70%, 50%) hex: #b3b3b380
    21223 
    21224  
    21225 
    21226 > color name ul16-c 70,70,70,100
    21227 
    21228 Color 'ul16-c' is opaque: gray(70%) hex: #b3b3b3
    21229 
    21230  
    21231 
    21232 > color name srl-t 50,50,50,50
    21233 
    21234 Color 'srl-t' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    21235 
    21236  
    21237 
    21238 > color name srl-t 50,50,50,100
    21239 
    21240 Color 'srl-t' is opaque: gray(50%) hex: #808080
    21241 
    21242  
    21243 
    21244 > color name highlight-t 92,78,8,50
    21245 
    21246 Color 'highlight-t' is 50% transparent: rgba(92%, 78%, 8%, 50%) hex: #ebc71480
    21247 
    21248  
    21249 
    21250 > color name highlight-c 92,78,8,100
    21251 
    21252 Color 'highlight-c' is opaque: rgb(92%, 78%, 8%) hex: #ebc714
    21253 
    21254  
    21255 
    21256 > color name tomato-t 100,39,28,50
    21257 
    21258 Color 'tomato-t' is 50% transparent: rgba(100%, 39%, 28%, 50%) hex: #ff634780
    21259 
    21260  
    21261 
    21262 > color name tomato-c 100,39,28,100
    21263 
    21264 Color 'tomato-c' is opaque: rgb(100%, 39%, 28%) hex: #ff6347
    21265 
    21266  
    21267 
    21268 > color name lightgrayt 83,83,83,50
    21269 
    21270 Color 'lightgrayt' is 50% transparent: rgba(83%, 83%, 83%, 50%) hex: #d4d4d480
    21271 
    21272  
    21273 
    21274 > color name silvert 75,75,75,50
    21275 
    21276 Color 'silvert' is 50% transparent: rgba(75%, 75%, 75%, 50%) hex: #bfbfbf80
    21277 
    21278  
    21279 
    21280 > color name grayt 50,50,50,50
    21281 
    21282 Color 'grayt' is 50% transparent: rgba(50%, 50%, 50%, 50%) hex: #80808080
    21283 
    21284  
    21285 
    21286 > color name lightcyant 88,100,100,50
    21287 
    21288 Color 'lightcyant' is 50% transparent: rgba(88%, 100%, 100%, 50%) hex:
    21289 #e0ffff80
    21290 
    21291  
    21292 
    21293 > color name yellowt 100,90,0,50
    21294 
    21295 Color 'yellowt' is 50% transparent: rgba(100%, 90%, 0%, 50%) hex: #ffe60080
    21296 
    21297  
    21298 
    21299 > color name deeppinkt 100,8,58,50
    21300 
    21301 Color 'deeppinkt' is 50% transparent: rgba(100%, 8%, 58%, 50%) hex: #ff149480
    21302 
    21303  
    21304 
    21305 > color name oranget 100,65,0,50
    21306 
    21307 Color 'oranget' is 50% transparent: rgba(100%, 65%, 0%, 50%) hex: #ffa60080
    21308 
    21309  
    21310 
    21311 > color name yellowgreent 60,80,20,50
    21312 
    21313 Color 'yellowgreent' is 50% transparent: rgba(60%, 80%, 20%, 50%) hex:
    21314 #99cc3380
    21315 
    21316  
    21317 
    21318 > color name darkmagentat 54,0,54,50
    21319 
    21320 Color 'darkmagentat' is 50% transparent: rgba(54%, 0%, 54%, 50%) hex:
    21321 #8a008a80
    21322 
    21323  
    21324 
    21325 > color name orchidt 86,44,84,50
    21326 
    21327 Color 'orchidt' is 50% transparent: rgba(86%, 44%, 84%, 50%) hex: #db70d680
    21328 
    21329  
    21330 
    21331 > color name paleturquoiset 69,93,93,50
    21332 
    21333 Color 'paleturquoiset' is 50% transparent: rgba(69%, 93%, 93%, 50%) hex:
    21334 #b0eded80
    21335 
    21336  
    21337 
    21338 > color name pinkt 100,75,80,50
    21339 
    21340 Color 'pinkt' is 50% transparent: rgba(100%, 75%, 80%, 50%) hex: #ffbfcc80
    21341 
    21342  
    21343 
    21344 > color name darkgreent 0,39,0,50
    21345 
    21346 Color 'darkgreent' is 50% transparent: rgba(0%, 39%, 0%, 50%) hex: #00630080
    21347 
    21348  
    21349 
    21350 > color name limegreent 20,80,20,50
    21351 
    21352 Color 'limegreent' is 50% transparent: rgba(20%, 80%, 20%, 50%) hex: #33cc3380
    21353 
    21354  
    21355 
    21356 > color name turquoiset 25,88,82,50
    21357 
    21358 Color 'turquoiset' is 50% transparent: rgba(25%, 88%, 82%, 50%) hex: #40e0d180
    21359 
    21360  
    21361 
    21362 > color name tealt 0,50,50,50
    21363 
    21364 Color 'tealt' is 50% transparent: rgba(0%, 50%, 50%, 50%) hex: #00808080
    21365 
    21366  
    21367 
    21368 > color name darkoranget 100,50,0,50
    21369 
    21370 Color 'darkoranget' is 50% transparent: rgba(100%, 50%, 0%, 50%) hex:
    21371 #ff800080
    21372 
    21373  
    21374 
    21375 > color name lightyellowt 100,100,50,50
    21376 
    21377 Color 'lightyellowt' is 50% transparent: rgba(100%, 100%, 50%, 50%) hex:
    21378 #ffff8080
    21379 
    21380  
    21381 
    21382 > color name goldt 100,75,0,50
    21383 
    21384 Color 'goldt' is 50% transparent: rgba(100%, 75%, 0%, 50%) hex: #ffbf0080
    21385 
    21386  
    21387 
    21388 > color name plumt 87,63,87,50
    21389 
    21390 Color 'plumt' is 50% transparent: rgba(87%, 63%, 87%, 50%) hex: #dea1de80
    21391 
    21392  
    21393 
    21394 > color name ssubluet 68,86,90,50
    21395 
    21396 Color 'ssubluet' is 50% transparent: rgba(68%, 86%, 90%, 50%) hex: #addbe680
    21397 
    21398  
    21399 
    21400 > color name p-prect 10,41,0,50
    21401 
    21402 Color 'p-prect' is 50% transparent: rgba(10%, 41%, 0%, 50%) hex: #1a690080
    21403 
    21404  
    21405 
    21406 > color name p-h2t 23,59,0,50
    21407 
    21408 Color 'p-h2t' is 50% transparent: rgba(23%, 59%, 0%, 50%) hex: #3b960080
    21409 
    21410  
    21411 
    21412 > color name p-h1t 40,73,0,50
    21413 
    21414 Color 'p-h1t' is 50% transparent: rgba(40%, 73%, 0%, 50%) hex: #66ba0080
    21415 
    21416  
    21417 
    21418 > color name p-h1c 40,73,0,100
    21419 
    21420 Color 'p-h1c' is opaque: rgb(40%, 73%, 0%) hex: #66ba00
    21421 
    21422  
    21423 
    21424 > color name p-spct 68,81,0,50
    21425 
    21426 Color 'p-spct' is 50% transparent: rgba(68%, 81%, 0%, 50%) hex: #adcf0080
    21427 
    21428  
    21429 
    21430 > color name p-spcc 68,81,0,100
    21431 
    21432 Color 'p-spcc' is opaque: rgb(68%, 81%, 0%) hex: #adcf00
    21433 
    21434  
    21435 
    21436 > color name p-fat 82,92,0,50
    21437 
    21438 Color 'p-fat' is 50% transparent: rgba(82%, 92%, 0%, 50%) hex: #d1eb0080
    21439 
    21440  
    21441 
    21442 > color name p-postt 100,92,0,50
    21443 
    21444 Color 'p-postt' is 50% transparent: rgba(100%, 92%, 0%, 50%) hex: #ffeb0080
    21445 
    21446  
    21447 
    21448 > color name d-t 100,80,4,50
    21449 
    21450 Color 'd-t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    21451 
    21452  
    21453 
    21454 > color name d-prect 95,100,50,50
    21455 
    21456 Color 'd-prect' is 50% transparent: rgba(95%, 100%, 50%, 50%) hex: #f2ff8080
    21457 
    21458  
    21459 
    21460 > color name d-h2t 100,90,4,50
    21461 
    21462 Color 'd-h2t' is 50% transparent: rgba(100%, 90%, 4%, 50%) hex: #ffe60a80
    21463 
    21464  
    21465 
    21466 > color name d-h1t 100,80,4,50
    21467 
    21468 Color 'd-h1t' is 50% transparent: rgba(100%, 80%, 4%, 50%) hex: #ffcc0a80
    21469 
    21470  
    21471 
    21472 > color name d-spct 100,70,4,50
    21473 
    21474 Color 'd-spct' is 50% transparent: rgba(100%, 70%, 4%, 50%) hex: #ffb30a80
    21475 
    21476  
    21477 
    21478 > color name d-fat 100,55,4,50
    21479 
    21480 Color 'd-fat' is 50% transparent: rgba(100%, 55%, 4%, 50%) hex: #ff8c0a80
    21481 
    21482  
    21483 
    21484 > color name d-fac 100,55,4,100
    21485 
    21486 Color 'd-fac' is opaque: rgb(100%, 55%, 4%) hex: #ff8c0a
    21487 
    21488  
    21489 
    21490 > color name d-postt 100,40,4,50
    21491 
    21492 Color 'd-postt' is 50% transparent: rgba(100%, 40%, 4%, 50%) hex: #ff660a80
    21493 
    21494  
    21495 
    21496 > color name m-t 95,43,62,50
    21497 
    21498 Color 'm-t' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    21499 
    21500  
    21501 
    21502 > color name m-prect 100,85,95,50
    21503 
    21504 Color 'm-prect' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    21505 
    21506  
    21507 
    21508 > color name m-h2t 100,85,95,50
    21509 
    21510 Color 'm-h2t' is 50% transparent: rgba(100%, 85%, 95%, 50%) hex: #ffd9f280
    21511 
    21512  
    21513 
    21514 > color name m-h1t 100,75,95,50
    21515 
    21516 Color 'm-h1t' is 50% transparent: rgba(100%, 75%, 95%, 50%) hex: #ffbff280
    21517 
    21518  
    21519 
    21520 > color name m-spct 89,63,75,50
    21521 
    21522 Color 'm-spct' is 50% transparent: rgba(89%, 63%, 75%, 50%) hex: #e3a1bf80
    21523 
    21524  
    21525 
    21526 > color name m-fat 95,51,75,50
    21527 
    21528 Color 'm-fat' is 50% transparent: rgba(95%, 51%, 75%, 50%) hex: #f282bf80
    21529 
    21530  
    21531 
    21532 > color name m-fac 95,51,75,100
    21533 
    21534 Color 'm-fac' is opaque: rgb(95%, 51%, 75%) hex: #f282bf
    21535 
    21536  
    21537 
    21538 > color name m-postt 95,43,62,50
    21539 
    21540 Color 'm-postt' is 50% transparent: rgba(95%, 43%, 62%, 50%) hex: #f26e9e80
    21541 
    21542  
    21543 executed 70S_colors.cxc 
    21544 
    21545 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_colorstandard.cxc
    21546 
    21547 > color 100,100,100,50
    21548 
    21549 > color lsu silvert
    21550 
    21551 > color /3 lightgrayt
    21552 
    21553 > color /5 lightgrayt
    21554 
    21555 > color ssu ssu-t
    21556 
    21557 > color head head-t
    21558 
    21559 > color efg efg-t
    21560 
    21561 > color dt d-t
    21562 
    21563 > color pt p-t
    21564 
    21565 > color pep p-t
    21566 
    21567 > color mrna m-t
    21568 
    21569 executed 70S_colorstandard.cxc 
    21570 
    21571 > windowsize 1000 1000
    21572 
    21573 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices.cxc
    21574 
    21575 > color h18 h18-t
    21576 
    21577 > color h23 h23-t
    21578 
    21579 > color h24 h24-t
    21580 
    21581 > color h28 h28-t
    21582 
    21583 > color h29 h29-t
    21584 
    21585 > color h30 h30-t
    21586 
    21587 > color h31 h31-t
    21588 
    21589 > color h34 h34-t
    21590 
    21591 > color h35 h35-t
    21592 
    21593 > color h36 h36-t
    21594 
    21595 > color h44 h44-t
    21596 
    21597 > color H69 hx69-t
    21598 
    21599 executed 70S_color_helices.cxc 
    21600 
    21601 > color h30|h36|h35 head-t
    21602 
    21603 > view dc3
    21604 
    21605 > surface cap true
    21606 
    21607 > color zone #12.1 near #12.3,5 distance 5
    21608 
    21609 > color zone #13.1 near #13.3,5 distance 5
    21610 
    21611 > color zone #14.1 near #14.3,5 distance 5
    21612 
    21613 > color zone #30.1 near #30.3,5 distance 5
    21614 
    21615 > color zone #31.1 near #31.3,5 distance 5
    21616 
    21617 > color zone #32.1 near #32.3,5 distance 5
    21618 
    21619 > color zone #33.1 near #33.3,5 distance 5
    21620 
    21621 > color zone #34.1 near #34.3,5 distance 5
    21622 
    21623 > color zone #30.9 near #30.3,5 distance 5
    21624 
    21625 > color zone #31.9 near #31.3,5 distance 5
    21626 
    21627 > color zone #32.9 near #32.3,5 distance 5
    21628 
    21629 > color zone #33.9 near #33.3,5 distance 5
    21630 
    21631 > color zone #34.9 near #34.3,5 distance 5
    21632 
    21633 > color h30|h36|h35 head-c
    21634 
    21635 > color h28 h28-c
    21636 
    21637 > color h29 h29-c
    21638 
    21639 > color h34 h34-c
    21640 
    21641 > color h23 h23-c
    21642 
    21643 > color h24 h24-c
    21644 
    21645 > color h31 h31-c
    21646 
    21647 > hide #!100
    21648 
    21649 > hide #101 models
    21650 
    21651 > cartoon style nucleic xsection oval width 1.3 thickness 1.3
    21652 
    21653 > transparency #*.3 0 target abc
    21654 
    21655 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/colors/70S_color_helices-s.cxc
    21656 
    21657 > color h18 h18-c
    21658 
    21659 > color h23 h23-c
    21660 
    21661 > color h24 h24-c
    21662 
    21663 > color h28 h28-c
    21664 
    21665 > color h29 h29-c
    21666 
    21667 > color h30 h30-c
    21668 
    21669 > color h31 h31-c
    21670 
    21671 > color h34 h34-c
    21672 
    21673 > color h35 h35-c
    21674 
    21675 > color h44 h44-c
    21676 
    21677 > color H69 hx69-c
    21678 
    21679 executed 70S_color_helices-s.cxc 
    21680 
    21681 > color /v d-c
    21682 
    21683 > color /y p-c
    21684 
    21685 > color /w m-c
    21686 
    21687 executed gtpys_dc.cxc 
    21688 
    21689 > surface cap true
    21690 
    21691 > lighting gentle
    21692 
    21693 > lighting intensity .2
    21694 
    21695 > size stickRadius 0.17
    21696 
    21697 Changed 1744812 bond radii 
    21698 
    21699 > nucribthin
    21700 
    21701 > style ringFill thin
    21702 
    21703 Changed 122200 residue ring styles 
    21704 
    21705 > graphics silhouettes true color black
    21706 
    21707 > ~select
    21708 
    21709 Nothing selected 
    21710 
    21711 > ~select
    21712 
    21713 Nothing selected 
    21714 
    21715 > ~ribbon
    21716 
    21717 > ~display
    21718 
    21719 > ribbon
    21720 
    21721 > ~ribbon mrna
    21722 
    21723 > display mrna
    21724 
    21725 > display antiplus
    21726 
    21727 > display /x:505-514,584
    21728 
    21729 > display /6:1492,1493,530,532,1054,1400,1397
    21730 
    21731 > display /3:1913
    21732 
    21733 > display #*.3/L:44
    21734 
    21735 > hide models
    21736 
    21737 > show #31.3,5 models
    21738 
    21739 > view dc1
    21740 
    21741 > windowsize 1000 1000
    21742 
    21743 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1b.tif
    21744 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21745 
    21746 > view dc2
    21747 
    21748 > windowsize 1000 1000
    21749 
    21750 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1b.tif
    21751 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21752 
    21753 > hide models
    21754 
    21755 > show #32.3,5 models
    21756 
    21757 > windowsize 1000 1000
    21758 
    21759 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysH1c.tif
    21760 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21761 
    21762 > view dc2
    21763 
    21764 > windowsize 1000 1000
    21765 
    21766 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysH1c.tif
    21767 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21768 
    21769 > hide models
    21770 
    21771 > show #12.3,5 models
    21772 
    21773 > view dc1
    21774 
    21775 > windowsize 1000 1000
    21776 
    21777 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_H1apo.tif
    21778 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21779 
    21780 > view dc2
    21781 
    21782 > windowsize 1000 1000
    21783 
    21784 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_H1bapo.tif
    21785 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21786 
    21787 > hide models
    21788 
    21789 > show #33.3,5 models
    21790 
    21791 > view dc1
    21792 
    21793 > windowsize 1000 1000
    21794 
    21795 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_ysI1a.tif
    21796 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21797 
    21798 > view dc2
    21799 
    21800 > windowsize 1000 1000
    21801 
    21802 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_ysI1a.tif
    21803 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21804 
    21805 > hide models
    21806 
    21807 > show #34.3,5 models
    21808 
    21809 > view dc1
    21810 
    21811 > windowsize 1000 1000
    21812 
    21813 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1bys.tif
    21814 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21815 
    21816 > view dc2
    21817 
    21818 > windowsize 1000 1000
    21819 
    21820 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1bys.tif
    21821 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21822 
    21823 > hide models
    21824 
    21825 > show #13.3,5 models
    21826 
    21827 > view dc1
    21828 
    21829 > windowsize 1000 1000
    21830 
    21831 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I1spc.tif
    21832 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21833 
    21834 > view dc2
    21835 
    21836 > windowsize 1000 1000
    21837 
    21838 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I1spc.tif
    21839 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21840 
    21841 > hide models
    21842 
    21843 > show #14.3,5 models
    21844 
    21845 > ~display #14.3/w:38,49
    21846 
    21847 > view dc1
    21848 
    21849 > windowsize 1000 1000
    21850 
    21851 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc1_I2fa.tif
    21852 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21853 
    21854 > view dc2
    21855 
    21856 > windowsize 1000 1000
    21857 
    21858 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc2_I2fa.tif
    21859 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21860 
    21861 > graphics silhouettes true color 25,25,25,15
    21862 
    21863 > style ringFill thick
    21864 
    21865 Changed 122200 residue ring styles 
    21866 
    21867 > ~cartoon /6/3
    21868 
    21869 > display /6/3
    21870 
    21871 > ~cartoon trna
    21872 
    21873 > display trna
    21874 
    21875 > volume emmaps style surface step 1 level 3
    21876 
    21877 > surface dust emmaps size 2
    21878 
    21879 > volume emmaps surfaceSmoothing true
    21880 
    21881 > view dc3
    21882 
    21883 > hide models
    21884 
    21885 > show #30 models
    21886 
    21887 > select #30.3
    21888 
    21889 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    21890 
    21891 > hide #30.9 models
    21892 
    21893 > windowsize 1000 1000
    21894 
    21895 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1a.tif
    21896 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21897 
    21898 > hide models
    21899 
    21900 > show #31 models
    21901 
    21902 > select #31.3
    21903 
    21904 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    21905 
    21906 > hide #31.9 models
    21907 
    21908 > windowsize 1000 1000
    21909 
    21910 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1b.tif
    21911 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21912 
    21913 > hide models
    21914 
    21915 > show #32 models
    21916 
    21917 > select #32.3
    21918 
    21919 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    21920 
    21921 > hide #32.9 models
    21922 
    21923 > windowsize 1000 1000
    21924 
    21925 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysH1c.tif
    21926 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21927 
    21928 > hide models
    21929 
    21930 > show #12 models
    21931 
    21932 > select #12.3
    21933 
    21934 55765 atoms, 60298 bonds, 4230 residues, 1 model selected 
    21935 
    21936 > windowsize 1000 1000
    21937 
    21938 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_H1apo.tif
    21939 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21940 
    21941 > hide models
    21942 
    21943 > show #33 models
    21944 
    21945 > select #33.3
    21946 
    21947 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    21948 
    21949 > hide #33.9 models
    21950 
    21951 > windowsize 1000 1000
    21952 
    21953 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_ysI1a.tif
    21954 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21955 
    21956 > hide models
    21957 
    21958 > show #34 models
    21959 
    21960 > select #34.3
    21961 
    21962 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    21963 
    21964 > hide #34.9 models
    21965 
    21966 > windowsize 1000 1000
    21967 
    21968 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1bys.tif
    21969 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21970 
    21971 > hide models
    21972 
    21973 > show #13 models
    21974 
    21975 > select #13.3
    21976 
    21977 61103 atoms, 65762 bonds, 4902 residues, 1 model selected 
    21978 
    21979 > windowsize 1000 1000
    21980 
    21981 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I1spc.tif
    21982 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21983 
    21984 > hide models
    21985 
    21986 > show #14 models
    21987 
    21988 > ~display #14.3/w:38,49
    21989 
    21990 > select #14.3
    21991 
    21992 60702 atoms, 65388 bonds, 1 pseudobond, 4855 residues, 2 models selected 
    21993 
    21994 > windowsize 1000 1000
    21995 
    21996 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig3_I2fa.tif
    21997 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    21998 
    21999 > volume emmaps style surface step 1 level 8
    22000 
    22001 > surface dust emmaps size 2
    22002 
    22003 > volume emmaps surfaceSmoothing true
    22004 
    22005 > hide models
    22006 
    22007 > show #30.3,5,9 models
    22008 
    22009 > select #30.3
    22010 
    22011 60930 atoms, 65574 bonds, 3 pseudobonds, 4887 residues, 3 models selected 
    22012 
    22013 > windowsize 1000 1000
    22014 
    22015 > save
    22016 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1a-FR.tif
    22017 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    22018 
    22019 > hide models
    22020 
    22021 > show #31.3,5,9 models
    22022 
    22023 > select #31.3
    22024 
    22025 60958 atoms, 65601 bonds, 3 pseudobonds, 4893 residues, 3 models selected 
    22026 
    22027 > windowsize 1000 1000
    22028 
    22029 > save
    22030 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1b-FR.tif
    22031 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    22032 
    22033 > hide models
    22034 
    22035 > show #32.3,5,9 models
    22036 
    22037 > select #32.3
    22038 
    22039 60097 atoms, 64722 bonds, 4 pseudobonds, 4779 residues, 3 models selected 
    22040 
    22041 > windowsize 1000 1000
    22042 
    22043 > save
    22044 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysH1c-FR.tif
    22045 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    22046 
    22047 > hide models
    22048 
    22049 > show #33.3,5,9 models
    22050 
    22051 > select #33.3
    22052 
    22053 61025 atoms, 65674 bonds, 2 pseudobonds, 4898 residues, 3 models selected 
    22054 
    22055 > windowsize 1000 1000
    22056 
    22057 > save
    22058 > /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_ysI1a-FR.tif
    22059 > format tiff width 1000 height 1000 supersample 20 transparentBackground true
    22060 
    22061 > hide models
    22062 
    22063 > show #34.3,5,9 models
    22064 
    22065 > select #34.3
    22066 
    22067 61064 atoms, 65713 bonds, 3 pseudobonds, 4898 residues, 3 models selected 
    22068 
    22069 > windowsize 1000 1000
    22070 
    22071 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/ys_dc3_sig8_I1bys-
    22072 > FR.tif format tiff width 1000 height 1000 supersample 20
    22073 > transparentBackground true
    22074 
    22075 > save /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxs
    22076 
    22077 ——— End of log from Wed Jul 19 18:31:44 2023 ———
    22078 
    22079 opened ChimeraX session 
    22080 
    22081 > open /data/EmilyRundlet/ChimeraX_70S/Sessions/gtpys/dc/gtpys_dc.cxc
    22082 
    22083 > open /data/EmilyRundlet/ChimeraX_70S/Scripts/startup/70S_assign.cxc
    22084 
    22085 > name atomods #*.3|#*.5
    22086 
    22087 > name emmaps #*.1|#*.7|#*.8|#*.9
    22088 
    22089 > name lsu #*.5
    22090 
    22091 > name lsumap #*.8
    22092 
    22093 > name ssu #*.3
    22094 
    22095 > name ssumap #*.7
    22096 
    22097 > name ligmap #*.9
    22098 
    22099 > name rna /y,v,w,3,6,5
    22100 
    22101 > name r23s /3
    22102 
    22103 > name r16s /6
    22104 
    22105 > name r5s /5
    22106 
    22107 > name pt /y
    22108 
    22109 > name dt /v
    22110 
    22111 > name efg /x
    22112 
    22113 > name pep /p
    22114 
    22115 > name mrna /w
    22116 
    22117 > name GSP :GSP
    22118 
    22119 > name GDP :GDP
    22120 
    22121 > name GTP :GTP
    22122 
    22123 > name ntide :GTP|:GDP|:GSP
    22124 
    22125 > name spc :SCM
    22126 
    22127 > name fua :FUA
    22128 
    22129 > name par :PAR
    22130 
    22131 > name argb :LIG
    22132 
    22133 > name drugs argb|par|fua|spc
    22134 
    22135 > name D1 /x:start-293
    22136 
    22137 > name D2 /x:294-410
    22138 
    22139 > name D3 /x:411-489
    22140 
    22141 > name D4 /x:490-612
    22142 
    22143 > name D5 /x:613-end
    22144 
    22145 > name sw1 /x:38-65
    22146 
    22147 > name sw2 /x:89-108
    22148 
    22149 > name pl /x:18-25
    22150 
    22151 > name nkxd /x:142-146
    22152 
    22153 > name mg /x:MG
    22154 
    22155 > name trna /y,v
    22156 
    22157 > name anticodon /y,v:34-36
    22158 
    22159 > name antiplus /y,v:32-38
    22160 
    22161 > name cca /y,v:74-76
    22162 
    22163 > name astem /y,v:1-7,66-73
    22164 
    22165 > name darm /y,v:8-25
    22166 
    22167 > name aarm /y,v:26-43
    22168 
    22169 > name varm /y,v:44-48
    22170 
    22171 > name tarm /y,v:49-65
    22172 
    22173 > name head #*.3/A/C/S/M/G/N/I/J/6:927-1390
    22174 
    22175 > name arg-head #20.3/A/C/S/M/G/N/I/J/6:927-1390
    22176 
    22177 > name post-head #15.3/A/C/S/M/G/N/I/J/6:927-1390
    22178 
    22179 > name fa-head #14.3/A/C/S/M/G/N/I/J/6:927-1390
    22180 
    22181 > name body #*.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    22182 
    22183 > name arg-body #20.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    22184 
    22185 > name post-body #15.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    22186 
    22187 > name fa-body #14.3/B/D/E/L/O/T/P/H/U/K/Q/R/F/6:start-926,1391-end
    22188 
    22189 > name aploop /6:956-959
    22190 
    22191 > name term16S /6:1503-end
    22192 
    22193 > name aphelix /6:1228-1230
    22194 
    22195 > name us2 #*.3/B
    22196 
    22197 > name us3 #*.3/C
    22198 
    22199 > name us4 #*.3/D
    22200 
    22201 > name us5 #*.3/E
    22202 
    22203 > name us6 #*.3/F
    22204 
    22205 > name us7 #*.3/G
    22206 
    22207 > name us8 #*.3/H
    22208 
    22209 > name us9 #*.3/I
    22210 
    22211 > name us10 #*.3/J
    22212 
    22213 > name us11 #*.3/K
    22214 
    22215 > name us12 #*.3/L
    22216 
    22217 > name us13 #*.3/M
    22218 
    22219 > name us14 #*.3/N
    22220 
    22221 > name us15 #*.3/O
    22222 
    22223 > name us16 #*.3/P
    22224 
    22225 > name us17 #*.3/Q
    22226 
    22227 > name us18 #*.3/R
    22228 
    22229 > name us19 #*.3/S
    22230 
    22231 > name us20 #*.3/T
    22232 
    22233 > name us21 #*.3/U
    22234 
    22235 > name us9-130 #*.3/I:130
    22236 
    22237 > name l1stalk /3:2097-2191
    22238 
    22239 > name srl /3:2652-2668
    22240 
    22241 > name asf /3:863-910
    22242 
    22243 > name l1stalk /3:2094-2195
    22244 
    22245 > name ul1 #*.5/A
    22246 
    22247 > name ul2 #*.5/B
    22248 
    22249 > name ul3 #*.5/C
    22250 
    22251 > name ul4 #*.5/D
    22252 
    22253 > name ul5 #*.5/E
    22254 
    22255 > name ul6 #*.5/F
    22256 
    22257 > name ul7 #*.5/G
    22258 
    22259 > name ul9 #*.5/I
    22260 
    22261 > name ul10 #*.5/J
    22262 
    22263 > name ul11 #*.5/K
    22264 
    22265 > name ul13 #*.5/M
    22266 
    22267 > name ul14 #*.5/N
    22268 
    22269 > name ul15 #*.5/O
    22270 
    22271 > name ul16 #*.5/P
    22272 
    22273 > name ul17 #*.5/Q
    22274 
    22275 > name ul18 #*.5/R
    22276 
    22277 > name ul19 #*.5/S
    22278 
    22279 > name ul20 #*.5/T
    22280 
    22281 > name ul21 #*.5/U
    22282 
    22283 > name ul22 #*.5/V
    22284 
    22285 > name ul23 #*.5/W
    22286 
    22287 > name ul24 #*.5/X
    22288 
    22289 > name ul25 #*.5/Y
    22290 
    22291 > name ul27 #*.5/a
    22292 
    22293 > name ul28 #*.5/b
    22294 
    22295 > name ul29 #*.5/c
    22296 
    22297 > name ul30 #*.5/d
    22298 
    22299 > name ul31 #*.5/e
    22300 
    22301 > name ul32 #*.5/f
    22302 
    22303 > name ul33 #*.5/g
    22304 
    22305 > name ul34 #*.5/h
    22306 
    22307 > name ul35 #*.5/i
    22308 
    22309 > name ul36 #*.5/j
    22310 
    22311 > name h1 #*.3/6:9-13|#*.3/6:21-25
    22312 
    22313 > name h2 #*.3/6:17-19|#*.3/6:916-918
    22314 
    22315 > name h3 #*.3/6:27-37|#*.3/6:547-556
    22316 
    22317 > name h4 #*.3/6:39-46|#*.3/6:395-403
    22318 
    22319 > name h5 #*.3/6:47-58|#*.3/6:354-360
    22320 
    22321 > name h6 #*.3/6:61-106
    22322 
    22323 > name h7 #*.3/6:122-142|#*.3/6:221-239
    22324 
    22325 > name h8 #*.3/6:144-178
    22326 
    22327 > name h9 #*.3/6:184-193
    22328 
    22329 > name h10 #*.3/6:198-219
    22330 
    22331 > name h11 #*.3/6:240-286
    22332 
    22333 > name h12 #*.3/6:289-311
    22334 
    22335 > name h13 #*.3/6:316-337
    22336 
    22337 > name h14 #*.3/6:339-350
    22338 
    22339 > name h15 #*.3/6:367-393
    22340 
    22341 > name h16 #*.3/6:406-436
    22342 
    22343 > name h17 #*.3/6:437-497
    22344 
    22345 > name h18 #*.3/6:500-545
    22346 
    22347 > name h19 #*.3/6:567-569|#*.3/6:881-88
    22348 
    22349 > name h20 #*.3/6:577-586|#*.3/6:755-76
    22350 
    22351 > name h21 #*.3/6:588-651
    22352 
    22353 > name h22 #*.3/6:654-672|#*.3/6:734-75
    22354 
    22355 > name h23 #*.3/6:673-733
    22356 
    22357 > name h24 #*.3/6:769-810
    22358 
    22359 > name h25 #*.3/6:821-827|#*.3/6:873-87
    22360 
    22361 > name h26 #*.3/6:829-857
    22362 
    22363 > name h26a #*.3/6:861-868
    22364 
    22365 > name h27 #*.3/6:885-912
    22366 
    22367 > name h28 #*.3/6:921-937|#*.3/6:1379-1400
    22368 
    22369 > name h29 #*.3/6:938-943|#*.3/6:1337-1346
    22370 
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    22375 > name h32 #*.3/6:984-991|#*.3/6:1212-1221
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    22379 > name h34 #*.3/6:1045-1065|#*.3/6:1188-1211
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    22397 > name h43 #*.3/6:1350-1372
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    22399 > name h44 #*.3/6:1401-1502
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    22401 > name h45 #*.3/6:1506-1529
    22402 
    22403 > name H1 #*.5/3:1-8|#*.5/3:2895-2904
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    22405 > name H2 #*.5/3:15-24|#*.5/3:516-525
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    22407 > name H3 #*.5/3:31-32|#*.5/3:473-474
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    22409 > name H4 #*.5/3:35-45|#*.5/3:433-445
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    22411 > name H5 #*.5/3:54-57|#*.5/3:114-117
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    22413 > name H6 #*.5/3:58-69
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    22415 > name H7 #*.5/3:75-110
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    22417 > name H8 #*.5/3:121-130
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    22419 > name H9 #*.5/3:131-148
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    22421 > name H10 #*.5/3:150-176
    22422 
    22423 > name H11 #*.5/3:183-213
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    22429 > name H14 #*.5/3:265-268|#*.5/3:424-427
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    22431 > name H16 #*.5/3:271-274|#*.5/3:363-366
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    22433 > name H18 #*.5/3:281-297|#*.5/3:341-359
    22434 
    22435 > name H19 #*.5/3:301-316
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    22457 > name H31 #*.5/3:637-651
    22458 
    22459 > name H32 #*.5/3:678-683|#*.5/3:794-799
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    22461 > name H33 #*.5/3:687-698|#*.5/3:763-775
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    22465 > name H35 #*.5/3:736-760
    22466 
    22467 > name H35a #*.5/3:777-787
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    22469 > name H36 #*.5/3:812-817|#*.5/3:1190-1195
    22470 
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    22473 > name H38 #*.5/3:838-940
    22474 
    22475 > name H39 #*.5/3:946-971
    22476 
    22477 > name H40 #*.5/3:976-987
    22478 
    22479 > name H41 #*.5/3:991-1018|#*.5/3:1144-1163
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    22482 
    22483 > name H43 #*.5/3:1057-1081
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    22486 
    22487 > name H45 #*.5/3:1164-1185
    22488 
    22489 > name H46 #*.5/3:1198-1247
    22490 
    22491 > name H47 #*.5/3:1276-1294
    22492 
    22493 > name H48 #*.5/3:1295-1298|#*.5/3:1642-1646
    22494 
    22495 > name H49 #*.5/3:1303-1306|#*.5/3:1622-1625
    22496 
    22497 > name H50 #*.5/3:1314-1338
    22498 
    22499 > name H51 #*.5/3:1345-1348|#*.5/3:1598-1601
    22500 
    22501 > name H52 #*.5/3:1350-1381
    22502 
    22503 > name H53 #*.5/3:1385-1402
    22504 
    22505 > name H54 #*.5/3:1405-1417|#*.5/3:1581-1597
    22506 
    22507 > name H55 #*.5/3:1420-1424|#*.5/3:1573-1578
    22508 
    22509 > name H56 #*.5/3:1429-1444|#*.5/3:1547-1564
    22510 
    22511 > name H57 #*.5/3:1445-1466
    22512 
    22513 > name H58 #*.5/3:1467-1525
    22514 
    22515 > name H59 #*.5/3:1527-1544
    22516 
    22517 > name H60 #*.5/3:1627-1639
    22518 
    22519 > name H61 #*.5/3:1647-1669|#*.5/3:1991-2009
    22520 
    22521 > name H62 #*.5/3:1682-1706
    22522 
    22523 > name H63 #*.5/3:1707-1751
    22524 
    22525 > name H64 #*.5/3:1764-1772|#*.5/3:1979-1988
    22526 
    22527 > name H65 #*.5/3:1775-1789
    22528 
    22529 > name H66 #*.5/3:1792-1827
    22530 
    22531 > name H67 #*.5/3:1830-1833|#*.5/3:1972-1975
    22532 
    22533 > name H68 #*.5/3:1835-1905
    22534 
    22535 > name H69 #*.5/3:1906-1924
    22536 
    22537 > name H71 #*.5/3:1945-1960
    22538 
    22539 > name H72 #*.5/3:2023-2040
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    22541 > name H73 #*.5/3:2043-2057|#*.5/3:2611-2625
    22542 
    22543 > name H74 #*.5/3:2064-2075|#*.5/3:2434-2446
    22544 
    22545 > name H75 #*.5/3:2077-2090|#*.5/3:2229-2243
    22546 
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    22548 
    22549 > name H77 #*.5/3:2120-2124|#*.5/3:2174-2178
    22550 
    22551 > name H78 #*.5/3:2127-2161
     5032[had to delete some of the log to fit within ticket length limits]
    225525033
    225535034> name H79 #*.5/3:2200-2223