Changes between Initial Version and Version 2 of Ticket #9310


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Timestamp:
Jul 6, 2023, 4:49:42 PM (2 years ago)
Author:
Greg Couch
Comment:

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  • Ticket #9310

    • Property Cc Eric Pettersen added
    • Property Component Unassigned → Input/Output
    • Property Owner set to Greg Couch
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Chain type wrong when edited structure reopened

  • Ticket #9310 – Description

    initial v2  
    33Platform:        Linux-5.19.0-43-generic-x86_64-with-glibc2.35
    44ChimeraX Version: 1.7.dev202306142048 (2023-06-14 20:48:12 UTC)
     5}}}
    56Description
    67I saved the attached mmCIF after doing some rebuilding work on 8grx (including mutating residues 112 and 158 of chain A from CYS to ARG using "swapaa mousemode sel ARG" for each, adding a couple of water molecules, and adding N-linked sugars to chain B). On re-opening chain A is being identified as `PT_NONE` rather than `PT_AMINO`.
    78
    89Just checked what happens after I make the same changes to chains C and D, and sure enough chain C (equivalent to A) is also registered as `PT_NONE` on reopening. I'm guessing it's because the sequence changes aren't being properly passed into the saved mmCIF?
    9 
     10{{{
    1011Log:
    1112> isolde shorthand