Changes between Initial Version and Version 1 of Ticket #8911, comment 6


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Timestamp:
Apr 28, 2023, 6:05:45 AM (3 years ago)
Author:
Tom Goddard

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  • Ticket #8911, comment 6

    initial v1  
    11Partly fixed.
    22
    3 I updated ColabFold to v1.5.2 which is the most recent version from March 2023 but that failed to install in Colab Python 3.10.11 because the required Python version was incorrectly specified in the ColabFold pyproject.toml file.  But another commit s week later fixed that.  So I used that unversioned Colabfold.  Monomer and dimer predictions of 1aom worked (although the structures were bad, and I think they were good with previous alphafold versions).
     3I updated ColabFold to v1.5.2 which is the most recent version from March 2023 but that failed to install in Colab Python 3.10.11 because the required Python version was incorrectly specified in the ColabFold pyproject.toml file.  But another commit 1 week later fixed that.  So I used that unversioned Colabfold.  Monomer and dimer predictions of 1aom worked (although the structures were bad, and I think they were good with previous alphafold versions).
    44
    55This newer Colabfold is also using Alphafold 2.3.1 which is supposed to handle larger structures and has new multimer networks.