![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Last modified 3 years ago
#8236 accepted defect
Graphics hardware encountered an error and was reset — at Version 1
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.dev202211300249 (2022-11-30 02:49:47 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x00007ff85d2574c0 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 235 in swap_buffers
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 497 in swap_buffers
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 191 in draw
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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"procRole" : "Foreground",
"version" : 2,
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"incident" : "7FFF1429-C945-4710-A0DC-59D13AE127D2",
"pid" : 78972,
"cpuType" : "X86-64",
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"procLaunch" : "2022-12-27 15:03:00.0454 -0500",
"procStartAbsTime" : 183490399563932,
"procExitAbsTime" : 185820428588269,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
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"crashReporterKey" : "3FDAB05F-85DE-2A46-54EF-BCE97900F602",
"wakeTime" : 17472,
"bridgeVersion" : {"build":"20P420","train":"7.0"},
"sleepWakeUUID" : "30A83168-0FC4-452E-86DB-D673FAC83C31",
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"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics hardware encountered an error and was reset: 0x00000002\n"],
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"uuid" : "5df621ee-554e-36a8-b448-93b2334e5480",
"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.6.0.0"
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"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
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"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
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"size" : 64028672,
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"path" : "\/Applications\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.dev202211300249 (2022-11-30)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/yizhang/Desktop/Fig2x_interface.cxs
Opened cryosparc_P75_J279_006_volume_map.mrc gaussian as #6, grid size
180,180,180, pixel 1.34, shown at step 1, values float32
Log from Tue Dec 27 15:02:11 2022UCSF ChimeraX version: 1.6.dev202211300249
(2022-11-30)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/yizhang/Desktop/Fig2x_comp_AF2.cxs
Opened cryosparc_P75_J279_006_volume_map.mrc gaussian as #6, grid size
180,180,180, pixel 1.34, shown at step 1, values float32
Log from Tue Dec 27 14:48:09 2022UCSF ChimeraX version: 1.6.dev202211300249
(2022-11-30)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/str_panels/Fig2x_comp_AF2.cxs
Opened cryosparc_P75_J279_006_volume_map.mrc gaussian as #6, grid size
180,180,180, pixel 1.34, shown at step 1, values float32
Log from Tue Dec 27 14:31:10 2022UCSF ChimeraX version: 1.6.dev202211300249
(2022-11-30)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/str_panels/Fig2x_compare.cxs
Opened cryosparc_P75_J279_006_volume_map.mrc gaussian as #6, grid size
180,180,180, pixel 1.34, shown at step 1, values float32
Log from Sun Dec 25 13:56:17 2022UCSF ChimeraX version: 1.6.dev202211300249
(2022-11-30)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/str_panels/Fig1f.cxs
restore_snapshot for "Volume" returned None
restore_snapshot for "VolumeSurface" returned None
Opened cryosparc_P75_J279_006_volume_map.mrc gaussian as #6, grid size
180,180,180, pixel 1.34, shown at level 0.19, step 1, values float32
Log from Thu Dec 22 16:39:58 2022UCSF ChimeraX version: 1.6.dev202211300249
(2022-11-30)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2022/_data_structure/_hsATE1_20220701_dataset/cryosparc_P75_J279_006_volume_map.mrc
Opened cryosparc_P75_J279_006_volume_map.mrc as #1, grid size 180,180,180,
pixel 1.34, shown at level 0.143, step 1, values float32
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2022/_data_structure/_hsATE1_20220701_dataset/hATE1_dimer_real_space_refined_002_renumber.pdb
Chain information for hATE1_dimer_real_space_refined_002_renumber.pdb #2
---
Chain | Description
A B | No description available
> open /Users/yizhang/Desktop/Preset_yz.cxc
> open annotated_ate1_real_space_refined_017.pdb
Failed opening file /Users/yizhang/Desktop/Preset_yz.cxc:
No such file/path: annotated_ate1_real_space_refined_017.pdb
> open /Users/yizhang/Desktop/Preset_yz.cxc
> open annotated_ate1_real_space_refined_017.pdb
Failed opening file /Users/yizhang/Desktop/Preset_yz.cxc:
No such file/path: annotated_ate1_real_space_refined_017.pdb
> set bgColor white
> transparency 50
> color bychain
> preset cylinders
Using preset: Cartoons/Nucleotides / Cylinders/Stubs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> preset ribbons
Using preset: Cartoons/Nucleotides / Ribbons/Slabs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
nucleotides tube/slab shape box
> preset cylinders
Using preset: Cartoons/Nucleotides / Cylinders/Stubs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
cartoon style protein modeh tube rad 2 sides 24 thick 0.6
cartoon style nucleic x round width 1.6 thick 1.6
nucleotides stubs
> volume #1 step 1
> transparency 50
> volume #1 level 1.5
> volume #1 level 1.1
> volume #1 level 0.8
> volume #1 level 0.2
> volume #1 level 0.25
> volume #1 level 0.3
> preset ribbon
Using preset: Cartoons/Nucleotides / Ribbons/Slabs
Changed 0 atom styles
Preset expands to these ChimeraX commands:
show nucleic
hide protein|solvent|H
surf hide
style (protein|nucleic|solvent) & @@draw_mode=0 stick
cartoon
cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
cartoon style ~(nucleic|strand) x round
cartoon style (nucleic|strand) x rect
nucleotides tube/slab shape box
> volume #1 level 0.1
[had to delete a bunch to fit within ticket limits]
> matchmaker #3 to #2/A
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hATE1_dimer_real_space_refined_002_renumber.pdb, chain A (#2) with
ScAte1_real_space_refined_038.pdb, chain A (#3), sequence alignment score =
466.7
RMSD between 167 pruned atom pairs is 1.238 angstroms; (across all 325 pairs:
12.594)
> hide #!2 models
> color #3 sky blue
> color #3 deep sky blue
> show #!2 models
> hide #!2 models
> color #3:25-53,126-151,198-219,337-448 spring green
> show #!2 models
> color #3 byatom
> hide #!1 models
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> save /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/str_panels/Fig2x_compare.cxs
> view
[Repeated 1 time(s)]
> show #!1 models
> view
> zoom
Pixel size at center of rotation is 0.268
> view
[Repeated 4 time(s)]
> view orient
[Repeated 1 time(s)]
> hide #!1 models
> show #!1 models
> hide #!3 models
> lighting simple
> lighting soft
> lighting full
> lighting simple
> lighting soft
> lighting shadows true intensity 0.5
> lighting soft
> lighting simple
> lighting soft
> lighting simple
[Repeated 1 time(s)]
> save /Users/yizhang/Desktop/image1.png supersample 3
> show #!3 models
> hide #!1 models
> save /Users/yizhang/Desktop/image2.png supersample 3
> save /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/str_panels/Fig2x_compare.cxs
——— End of log from Sun Dec 25 13:56:17 2022 ———
opened ChimeraX session
> open /Users/yizhang/Downloads/AF-O95260-F1-model_v4.pdb
AF-O95260-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for arginyl-TRNA--protein transferase 1
(O95260) [more info...]
Chain information for AF-O95260-F1-model_v4.pdb #4
---
Chain | Description | UniProt
A | arginyl-TRNA--protein transferase 1 | ATE1_HUMAN
> matchmaker #4 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hATE1_dimer_real_space_refined_002_renumber.pdb, chain A (#2) with
AF-O95260-F1-model_v4.pdb, chain A (#4), sequence alignment score = 1458.6
RMSD between 315 pruned atom pairs is 1.012 angstroms; (across all 349 pairs:
1.272)
> color #4 slate gray
> save /Users/yizhang/Desktop/Fig2x_comp_AF2.cxs
> view
> hide #!3 models
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/_data_structure/_hsATE1_20220701_dataset/hATE1_dimer_real_space_refined_002_renumber.pdb
Chain information for hATE1_dimer_real_space_refined_002_renumber.pdb #5
---
Chain | Description
A B | No description available
> matchmaker #5/A to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hATE1_dimer_real_space_refined_002_renumber.pdb, chain A (#2) with
hATE1_dimer_real_space_refined_002_renumber.pdb, chain A (#5), sequence
alignment score = 1858.4
RMSD between 349 pruned atom pairs is 0.000 angstroms; (across all 349 pairs:
0.000)
> select add #5
11214 atoms, 11380 bonds, 2 pseudobonds, 698 residues, 2 models selected
> select subtract #5
Nothing selected
> close #5
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/_data_structure/_hsATE1_20220701_dataset/hATE1_dimer_real_space_refined_002_renumber.pdb
Chain information for hATE1_dimer_real_space_refined_002_renumber.pdb #5
---
Chain | Description
A B | No description available
> select #5
11214 atoms, 11380 bonds, 2 pseudobonds, 698 residues, 2 models selected
> select add #2
22428 atoms, 22760 bonds, 4 pseudobonds, 1396 residues, 4 models selected
> select subtract #2
11214 atoms, 11380 bonds, 2 pseudobonds, 698 residues, 2 models selected
> select subtract #5
Nothing selected
> color #4:103-264 spring green
> color #4:102-264 spring green
> undo
[Repeated 1 time(s)]
> color #4:101-265 spring green
> undo
> color #4:104-265 spring green
> hide #5/A
> color #5/B yellow
> color #5/B dark khaki
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" interactive
Using preset: Overall Look / Interactive
Preset expands to these ChimeraX commands:
~set bg
graphics silhouettes f
lighting depthCue t
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> preset "overall look" "publication 2 (depth-cued)"
Using preset: Overall Look / Publication 2 (Depth-Cued)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes f
lighting depthCue t
> view
> orient
Unknown command: orient
> orient
Unknown command: orient
> view orient
> lighting simple
> lighting soft
> lighting full
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> lighting simple
> lighting soft
> lighting simple
> lighting shadows true
> lighting shadows false
> open /Users/yizhang/Downloads/AF-O95260-F1-model_v4.pdb
AF-O95260-F1-model_v4.pdb title:
Alphafold monomer V2.0 prediction for arginyl-TRNA--protein transferase 1
(O95260) [more info...]
Chain information for AF-O95260-F1-model_v4.pdb #7
---
Chain | Description | UniProt
A | arginyl-TRNA--protein transferase 1 | ATE1_HUMAN
> matchmaker #7 to #5/B
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hATE1_dimer_real_space_refined_002_renumber.pdb, chain B (#5) with
AF-O95260-F1-model_v4.pdb, chain A (#7), sequence alignment score = 1413.6
RMSD between 320 pruned atom pairs is 1.063 angstroms; (across all 349 pairs:
1.404)
> close #7
> view
> lighting simple
> save /Users/yizhang/Desktop/Fig2x_comp_AF2.cxs
——— End of log from Tue Dec 27 14:31:10 2022 ———
opened ChimeraX session
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/str_panels/Fig2x_comp_AF2.cxc
> open O95260
'O95260' has no suffix
> open /Users/yizhang/Library/CloudStorage/Box-
> Box/Manuscripts/hsATE1_2023/str_panels/Fig2x_comp_AF2.cxc
> matchmaker #4 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker hATE1_dimer_real_space_refined_002_renumber.pdb, chain A (#2) with
AF-O95260-F1-model_v4.pdb, chain A (#4), sequence alignment score = 1458.6
RMSD between 315 pruned atom pairs is 1.012 angstroms; (across all 349 pairs:
1.272)
> hide #5/A
> color #5/B dark khaki
> color #4 light gray
> color #4:104-265 blue
executed Fig2x_comp_AF2.cxc
> view
[Repeated 1 time(s)]
> save /Users/yizhang/Desktop/Fig2x_comp_AF2.cxs
——— End of log from Tue Dec 27 14:48:09 2022 ———
opened ChimeraX session
> save /Users/yizhang/Desktop/Fig2x_interface.cxs
——— End of log from Tue Dec 27 15:02:11 2022 ———
opened ChimeraX session
OpenGL version: 4.1 INTEL-20.2.44
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1916.40.8.0.0 (iBridge: 20.16.420.0.0,0)
OS Loader Version: 564.40.4~27
Software:
System Software Overview:
System Version: macOS 13.0.1 (22A400)
Kernel Version: Darwin 22.1.0
Time since boot: 6 days, 6 hours, 39 minutes
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Support: Metal 3
Displays:
U32R59x:
Resolution: 4608 x 2592
UI Looks like: 2304 x 1296 @ 30.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: HNAT600173
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.0
Babel: 2.11.0
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.5.7
ChimeraX-AddH: 2.2.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.8
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.43.4
ChimeraX-AtomicLibrary: 8.0.4
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202211300249
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.9
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.7
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.3
ChimeraX-PDB: 2.6.9
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.25.2
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.6
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.4
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.2.0
filelock: 3.7.1
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.7.31
imagesize: 1.4.1
importlib-metadata: 5.1.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 5.1.0
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.4
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
platformdirs: 2.5.4
prompt-toolkit: 3.0.33
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.6
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.13
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.11.0
Change History (1)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
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