Opened 3 years ago

Last modified 2 years ago

#8182 closed enhancement

Update AlphaFold prediction to use version 2.3.0 which handles larger structures — at Initial Version

Reported by: Tom Goddard Owned by: Tom Goddard
Priority: moderate Milestone:
Component: Structure Prediction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The AlphaFold 2.3.0 release made December 13, 2022 has memory optimizations that allow predicting larger multimers. Also the network parameters have been update and are supposed to give more accurate predictions for large proteins. And the sequence databases have been updated.

We should update to use this if possible. Currently we use ColabFold, so it will require ColabFold to support the new AlphaFold 2.3.0. I made a ticket on the ColabFold github to ask for that update

https://github.com/sokrypton/ColabFold/issues/345

Change History (0)

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