Changes between Initial Version and Version 1 of Ticket #8153, comment 1


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Timestamp:
Dec 8, 2022, 4:31:08 PM (3 years ago)
Author:
Tom Goddard

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  • Ticket #8153, comment 1

    initial v1  
    1 I've attached the mmcif file.  It contains 5 models (from NMR).  I bet the problem is that the atom_site records for the models are not contiguous.  There are atoms for models 1,2,3,4,5 and then more atoms for model 1,2,3,4,5 later in the table.  Not sure if that is allowed by the mmCIF spec.
     1I've attached the mmcif file.  It contains 5 models (from NMR).  The atoms for each model are not grouped together in the atom_site table.  The atom order in the table is 1A (model 1 chain A), 2A,3A,4A,5A, 1B,2B,3B,4B,5B, 1C,2C,3C,4C,5C.  So all the chain A atoms for the 5 models come before the chain B atoms.  The only atoms that get opened by ChimeraX are in chain C.
     2
     3The mmCIF reader should warn when the atoms are in an illegal order, if in fact this order is illegal.