Changes between Initial Version and Version 1 of Ticket #8121


Ignore:
Timestamp:
Dec 5, 2022, 11:47:38 AM (3 years ago)
Author:
Eric Pettersen
Comment:

Duplicate #7881

Early versions of "distance style" or its settings tool must have allowed negative decimal places.

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #8121

    • Property Component Unassigned → Structure Analysis
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Resolution → can't reproduce
    • Property Status new → closed
    • Property Summary ChimeraX bug report submission → Negative decimal places for distance format

  • Ticket #8121 – Description

    initial v1  
    634634 
    635635
    636 > hide #3 models
    637 
    638 > ~select #3
    639 
    640 Nothing selected 
    641 
    642 > select #4
    643 
    644 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    645 
    646 > hide sel atoms
    647 
    648 > show sel cartoons
    649 
    650 > select clear
    651 
    652 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    653 > chimeraX.pdb"
    654 
    655 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    656 building/20210929_final_for chimeraX.pdb 
    657 --- 
    658 warnings | Ignored bad PDB record found on line 20 
    659  
    660  
    661 Ignored bad PDB record found on line 21 
    662 DEVIATIONS FROM IDEAL VALUES. 
    663  
    664 Ignored bad PDB record found on line 22 
    665 BOND : 0.009 0.093 13141 
    666  
    667 Ignored bad PDB record found on line 23 
    668 ANGLE : 0.885 11.471 18915 
    669  
    670 Ignored bad PDB record found on line 24 
    671 CHIRALITY : 0.050 0.241 2159 
    672  
    673 21 messages similar to the above omitted 
    674 End residue of secondary structure not found: HELIX 36 36 HIS S 162 LEU 168 01 
    675 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    676 0 
    677 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    678 86 0 
    679 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    680 51 0 
    681 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    682 86 0 
    683 End residue of secondary structure not found: SHEET 22 2222 MET U 1 TH 0 0 
    684  
    685 Chain information for 20210929_final_for chimeraX.pdb #5 
    686 --- 
    687 Chain | Description 
    688 A | No description available 
    689 B | No description available 
    690 C | No description available 
    691 D H | No description available 
    692 E | No description available 
    693 F | No description available 
    694 G | No description available 
    695 I | No description available 
    696 J | No description available 
    697 S | No description available 
    698 U | No description available 
    699  
    700 
    701 > hide #4 models
    702 
    703 > select #5
    704 
    705 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    706 
    707 > hide sel atoms
    708 
    709 > show sel cartoons
    710 
    711 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    712 > chimeraX_.pdb"
    713 
    714 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    715 building/20210929_final_for chimeraX_.pdb 
    716 --- 
    717 warnings | Ignored bad PDB record found on line 20 
    718 DEVIATIONS FROM IDEAL VALUES. 
    719  
    720 Ignored bad PDB record found on line 21 
    721 BOND : 0.009 0.093 13141 
    722  
    723 Ignored bad PDB record found on line 22 
    724 ANGLE : 0.885 11.471 18915 
    725  
    726 Ignored bad PDB record found on line 23 
    727 CHIRALITY : 0.050 0.241 2159 
    728  
    729 Ignored bad PDB record found on line 24 
    730 PLANARITY : 0.006 0.054 1443 
    731  
    732 20 messages similar to the above omitted 
    733 End residue of secondary structure not found: HELIX 36 36 HIS S 162 LEU 168 01 
    734 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    735 0 
    736 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    737 86 0 
    738 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    739 51 0 
    740 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    741 86 0 
    742  
    743 Chain information for 20210929_final_for chimeraX_.pdb #6 
    744 --- 
    745 Chain | Description 
    746 A | No description available 
    747 B | No description available 
    748 C | No description available 
    749 D H | No description available 
    750 E | No description available 
    751 F | No description available 
    752 G | No description available 
    753 I | No description available 
    754 J | No description available 
    755 S | No description available 
    756 U | No description available 
    757  
    758 
    759 > hide #5 models
    760 
    761 > select #6
    762 
    763 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    764 
    765 > hide sel atoms
    766 
    767 > show sel cartoons
    768 
    769 > close #1-5
    770 
    771 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    772 > chimeraX_.pdb"
    773 
    774 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    775 building/20210929_final_for chimeraX_.pdb 
    776 --- 
    777 warnings | Ignored bad PDB record found on line 20 
    778 DEVIATIONS FROM IDEAL VALUES. 
    779  
    780 Ignored bad PDB record found on line 21 
    781 BOND : 0.009 0.093 13141 
    782  
    783 Ignored bad PDB record found on line 22 
    784 ANGLE : 0.885 11.471 18915 
    785  
    786 Ignored bad PDB record found on line 23 
    787 CHIRALITY : 0.050 0.241 2159 
    788  
    789 Ignored bad PDB record found on line 24 
    790 PLANARITY : 0.006 0.054 1443 
    791  
    792 20 messages similar to the above omitted 
    793 End residue of secondary structure not found: HELIX 36 36 HIS S 162 LEU 168 01 
    794 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    795 0 
    796 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    797 86 0 
    798 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    799 51 0 
    800 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    801 86 0 
    802  
    803 Chain information for 20210929_final_for chimeraX_.pdb #1 
    804 --- 
    805 Chain | Description 
    806 A | No description available 
    807 B | No description available 
    808 C | No description available 
    809 D H | No description available 
    810 E | No description available 
    811 F | No description available 
    812 G | No description available 
    813 I | No description available 
    814 J | No description available 
    815 S | No description available 
    816 U | No description available 
    817  
    818 
    819 > hide #1 models
    820 
    821 > hide sel cartoons
    822 
    823 > show sel surfaces
    824 
    825 > show sel cartoons
    826 
    827 > hide sel surfaces
    828 
    829 > select clear
    830 
    831 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    832 > chimeraX_.pdb"
    833 
    834 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    835 building/20210929_final_for chimeraX_.pdb 
    836 --- 
    837 warnings | Ignored bad PDB record found on line 20 
    838 DEVIATIONS FROM IDEAL VALUES. 
    839  
    840 Ignored bad PDB record found on line 21 
    841 BOND : 0.009 0.093 13141 
    842  
    843 Ignored bad PDB record found on line 22 
    844 ANGLE : 0.885 11.471 18915 
    845  
    846 Ignored bad PDB record found on line 23 
    847 CHIRALITY : 0.050 0.241 2159 
    848  
    849 Ignored bad PDB record found on line 24 
    850 PLANARITY : 0.006 0.054 1443 
    851  
    852 20 messages similar to the above omitted 
    853 End residue of secondary structure not found: HELIX 36 36 HIS S 162 LEU 168 1
    854 7 
    855 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    856 0 
    857 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    858 86 0 
    859 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    860 51 0 
    861 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    862 86 0 
    863  
    864 Chain information for 20210929_final_for chimeraX_.pdb #2 
    865 --- 
    866 Chain | Description 
    867 A | No description available 
    868 B | No description available 
    869 C | No description available 
    870 D H | No description available 
    871 E | No description available 
    872 F | No description available 
    873 G | No description available 
    874 I | No description available 
    875 J | No description available 
    876 S | No description available 
    877 U | No description available 
    878  
    879 
    880 > hide #2 models
    881 
    882 > select #6
    883 
    884 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    885 
    886 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    887 > chimeraX_.pdb"
    888 
    889 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    890 building/20210929_final_for chimeraX_.pdb 
    891 --- 
    892 warnings | Ignored bad PDB record found on line 20 
    893 DEVIATIONS FROM IDEAL VALUES. 
    894  
    895 Ignored bad PDB record found on line 21 
    896 BOND : 0.009 0.093 13141 
    897  
    898 Ignored bad PDB record found on line 22 
    899 ANGLE : 0.885 11.471 18915 
    900  
    901 Ignored bad PDB record found on line 23 
    902 CHIRALITY : 0.050 0.241 2159 
    903  
    904 Ignored bad PDB record found on line 24 
    905 PLANARITY : 0.006 0.054 1443 
    906  
    907 20 messages similar to the above omitted 
    908 End residue of secondary structure not found: HELIX 36 36 HIS S 162 LEU 168 1 
    909 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    910 0 
    911 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    912 86 0 
    913 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    914 51 0 
    915 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    916 86 0 
    917  
    918 Chain information for 20210929_final_for chimeraX_.pdb #3 
    919 --- 
    920 Chain | Description 
    921 A | No description available 
    922 B | No description available 
    923 C | No description available 
    924 D H | No description available 
    925 E | No description available 
    926 F | No description available 
    927 G | No description available 
    928 I | No description available 
    929 J | No description available 
    930 S | No description available 
    931 U | No description available 
    932  
    933 
    934 > hide #3 models
    935 
    936 > hide sel atoms
    937 
    938 > show sel cartoons
    939 
    940 > show sel cartoons
    941 
    942 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    943 > chimeraX_.pdb"
    944 
    945 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    946 building/20210929_final_for chimeraX_.pdb 
    947 --- 
    948 warnings | Ignored bad PDB record found on line 20 
    949 DEVIATIONS FROM IDEAL VALUES. 
    950  
    951 Ignored bad PDB record found on line 21 
    952 BOND : 0.009 0.093 13141 
    953  
    954 Ignored bad PDB record found on line 22 
    955 ANGLE : 0.885 11.471 18915 
    956  
    957 Ignored bad PDB record found on line 23 
    958 CHIRALITY : 0.050 0.241 2159 
    959  
    960 Ignored bad PDB record found on line 24 
    961 PLANARITY : 0.006 0.054 1443 
    962  
    963 20 messages similar to the above omitted 
    964 End residue of secondary structure not found: HELIX 36 36 HIS S 162 LEU 168 1
    965 7 
    966 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    967 0 
    968 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    969 86 0 
    970 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    971 51 0 
    972 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    973 86 0 
    974  
    975 Chain information for 20210929_final_for chimeraX_.pdb #4 
    976 --- 
    977 Chain | Description 
    978 A | No description available 
    979 B | No description available 
    980 C | No description available 
    981 D H | No description available 
    982 E | No description available 
    983 F | No description available 
    984 G | No description available 
    985 I | No description available 
    986 J | No description available 
    987 S | No description available 
    988 U | No description available 
    989  
    990 
    991 > hide #4 models
    992 
    993 > hide sel atoms
    994 
    995 > show sel cartoons
    996 
    997 > close #1-4
    998 
    999 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    1000 > chimeraX_.pdb"
    1001 
    1002 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    1003 building/20210929_final_for chimeraX_.pdb 
    1004 --- 
    1005 warnings | Ignored bad PDB record found on line 20 
    1006 DEVIATIONS FROM IDEAL VALUES. 
    1007  
    1008 Ignored bad PDB record found on line 21 
    1009 BOND : 0.009 0.093 13141 
    1010  
    1011 Ignored bad PDB record found on line 22 
    1012 ANGLE : 0.885 11.471 18915 
    1013  
    1014 Ignored bad PDB record found on line 23 
    1015 CHIRALITY : 0.050 0.241 2159 
    1016  
    1017 Ignored bad PDB record found on line 24 
    1018 PLANARITY : 0.006 0.054 1443 
    1019  
    1020 20 messages similar to the above omitted 
    1021 End residue of secondary structure not found: HELIX 36 36 HIS S 162 LEU 168 1
    1022 7 
    1023 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    1024 0 
    1025 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    1026 86 0 
    1027 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    1028 51 0 
    1029 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    1030 86 0 
    1031  
    1032 Chain information for 20210929_final_for chimeraX_.pdb #1 
    1033 --- 
    1034 Chain | Description 
    1035 A | No description available 
    1036 B | No description available 
    1037 C | No description available 
    1038 D H | No description available 
    1039 E | No description available 
    1040 F | No description available 
    1041 G | No description available 
    1042 I | No description available 
    1043 J | No description available 
    1044 S | No description available 
    1045 U | No description available 
    1046  
    1047 
    1048 > hide sel atoms
    1049 
    1050 > select #1
    1051 
    1052 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1053 
    1054 > hide sel atoms
    1055 
    1056 > show sel cartoons
    1057 
    1058 > select #6
    1059 
    1060 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1061 
    1062 > select #1
    1063 
    1064 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1065 
    1066 > select #6
    1067 
    1068 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1069 
    1070 > select #1
    1071 
    1072 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1073 
    1074 > select #6
    1075 
    1076 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1077 
    1078 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    1079 > chimeraX_.pdb"
    1080 
    1081 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    1082 building/20210929_final_for chimeraX_.pdb 
    1083 --- 
    1084 warnings | Ignored bad PDB record found on line 20 
    1085 DEVIATIONS FROM IDEAL VALUES. 
    1086  
    1087 Ignored bad PDB record found on line 21 
    1088 BOND : 0.009 0.093 13141 
    1089  
    1090 Ignored bad PDB record found on line 22 
    1091 ANGLE : 0.885 11.471 18915 
    1092  
    1093 Ignored bad PDB record found on line 23 
    1094 CHIRALITY : 0.050 0.241 2159 
    1095  
    1096 Ignored bad PDB record found on line 24 
    1097 PLANARITY : 0.006 0.054 1443 
    1098  
    1099 20 messages similar to the above omitted 
    1100 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    1101 0 
    1102 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    1103 86 0 
    1104 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    1105 51 0 
    1106 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    1107 86 0 
    1108  
    1109 Chain information for 20210929_final_for chimeraX_.pdb #2 
    1110 --- 
    1111 Chain | Description 
    1112 A | No description available 
    1113 B | No description available 
    1114 C | No description available 
    1115 D H | No description available 
    1116 E | No description available 
    1117 F | No description available 
    1118 G | No description available 
    1119 I | No description available 
    1120 J | No description available 
    1121 S | No description available 
    1122 U | No description available 
    1123  
    1124 
    1125 > select #2
    1126 
    1127 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1128 
    1129 > hide sel atoms
    1130 
    1131 > show sel cartoons
    1132 
    1133 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    1134 > chimeraX_.pdb"
    1135 
    1136 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    1137 building/20210929_final_for chimeraX_.pdb 
    1138 --- 
    1139 warnings | Ignored bad PDB record found on line 20 
    1140 DEVIATIONS FROM IDEAL VALUES. 
    1141  
    1142 Ignored bad PDB record found on line 21 
    1143 BOND : 0.009 0.093 13141 
    1144  
    1145 Ignored bad PDB record found on line 22 
    1146 ANGLE : 0.885 11.471 18915 
    1147  
    1148 Ignored bad PDB record found on line 23 
    1149 CHIRALITY : 0.050 0.241 2159 
    1150  
    1151 Ignored bad PDB record found on line 24 
    1152 PLANARITY : 0.006 0.054 1443 
    1153  
    1154 18 messages similar to the above omitted 
    1155 End residue of secondary structure not found: HELIX 32 32 THR H 90 LEU H 102
    1156 01 1 
    1157 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    1158 0 
    1159 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    1160 86 0 
    1161 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    1162 51 0 
    1163 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    1164 86 0 
    1165  
    1166 Chain information for 20210929_final_for chimeraX_.pdb #3 
    1167 --- 
    1168 Chain | Description 
    1169 A | No description available 
    1170 B | No description available 
    1171 C | No description available 
    1172 D H | No description available 
    1173 E | No description available 
    1174 F | No description available 
    1175 G | No description available 
    1176 I | No description available 
    1177 J | No description available 
    1178 S | No description available 
    1179 U | No description available 
    1180  
    1181 
    1182 > select #3
    1183 
    1184 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1185 
    1186 > hide sel atoms
    1187 
    1188 > show sel cartoons
    1189 
    1190 > select clear
    1191 
    1192 > close #1-2#6
    1193 
    1194 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    1195 > chimeraX_.pdb"
    1196 
    1197 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    1198 building/20210929_final_for chimeraX_.pdb 
    1199 --- 
    1200 warnings | Ignored bad PDB record found on line 20 
    1201 DEVIATIONS FROM IDEAL VALUES. 
    1202  
    1203 Ignored bad PDB record found on line 21 
    1204 BOND : 0.009 0.093 13141 
    1205  
    1206 Ignored bad PDB record found on line 22 
    1207 ANGLE : 0.885 11.471 18915 
    1208  
    1209 Ignored bad PDB record found on line 23 
    1210 CHIRALITY : 0.050 0.241 2159 
    1211  
    1212 Ignored bad PDB record found on line 24 
    1213 PLANARITY : 0.006 0.054 1443 
    1214  
    1215 18 messages similar to the above omitted 
    1216 End residue of secondary structure not found: HELIX 32 32 THR H 90 LEU H 102
    1217 01 1 
    1218 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    1219 0 
    1220 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    1221 86 0 
    1222 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    1223 51 0 
    1224 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    1225 86 0 
    1226  
    1227 Chain information for 20210929_final_for chimeraX_.pdb #1 
    1228 --- 
    1229 Chain | Description 
    1230 A | No description available 
    1231 B | No description available 
    1232 C | No description available 
    1233 D H | No description available 
    1234 E | No description available 
    1235 F | No description available 
    1236 G | No description available 
    1237 I | No description available 
    1238 J | No description available 
    1239 S | No description available 
    1240 U | No description available 
    1241  
    1242 
    1243 > select #1
    1244 
    1245 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1246 
    1247 > hide sel atoms
    1248 
    1249 > show sel cartoons
    1250 
    1251 > select #3
    1252 
    1253 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1254 
    1255 > ~select #3
    1256 
    1257 Nothing selected 
    1258 
    1259 > select #1
    1260 
    1261 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1262 
    1263 > ~select #1
    1264 
    1265 Nothing selected 
    1266 
    1267 > select #1
    1268 
    1269 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1270 
    1271 > ~select #1
    1272 
    1273 Nothing selected 
    1274 
    1275 > select #3
    1276 
    1277 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1278 
    1279 > ~select #3
    1280 
    1281 Nothing selected 
    1282 
    1283 > open "C:/Users/huasong/Desktop/SSX1 Model building/20210929_final_for
    1284 > chimeraX_.pdb"
    1285 
    1286 Summary of feedback from opening C:/Users/huasong/Desktop/SSX1 Model
    1287 building/20210929_final_for chimeraX_.pdb 
    1288 --- 
    1289 warnings | Ignored bad PDB record found on line 20 
    1290 DEVIATIONS FROM IDEAL VALUES. 
    1291  
    1292 Ignored bad PDB record found on line 21 
    1293 BOND : 0.009 0.093 13141 
    1294  
    1295 Ignored bad PDB record found on line 22 
    1296 ANGLE : 0.885 11.471 18915 
    1297  
    1298 Ignored bad PDB record found on line 23 
    1299 CHIRALITY : 0.050 0.241 2159 
    1300  
    1301 Ignored bad PDB record found on line 24 
    1302 PLANARITY : 0.006 0.054 1443 
    1303  
    1304 16 messages similar to the above omitted 
    1305 End residue of secondary structure not found: HELIX 32 32 THR H 90 LEU H 102
    1306 01 1 
    1307 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    1308 0 
    1309 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    1310 86 0 
    1311 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    1312 51 0 
    1313 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    1314 86 0 
    1315  
    1316 Chain information for 20210929_final_for chimeraX_.pdb #2 
    1317 --- 
    1318 Chain | Description 
    1319 A | No description available 
    1320 B | No description available 
    1321 C | No description available 
    1322 D H | No description available 
    1323 E | No description available 
    1324 F | No description available 
    1325 G | No description available 
    1326 I | No description available 
    1327 J | No description available 
    1328 S | No description available 
    1329 U | No description available 
    1330  
    1331 
    1332 > select #2
    1333 
    1334 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1335 
    1336 > hide sel atoms
    1337 
    1338 > show sel cartoons
    1339 
    1340 > select clear
    1341 
    1342 > hide #2 models
    1343 
    1344 > show #2 models
    1345 
    1346 > close #3
    1347 
    1348 > close #1
    1349 
    1350 > select /I
    1351 
    1352 2822 atoms, 3168 bonds, 137 residues, 1 model selected 
    1353 
    1354 > color sel dark gray
    1355 
    1356 > select /J
    1357 
    1358 2795 atoms, 3132 bonds, 137 residues, 1 model selected 
    1359 
    1360 > color sel dark gray
    1361 
    1362 > select clear
    1363 
    1364 > select /G
    1365 
    1366 815 atoms, 825 bonds, 106 residues, 1 model selected 
    1367 
    1368 > ui tool show "Color Actions"
    1369 
    1370 > color sel wheat
    1371 
    1372 > color sel burly wood
    1373 
    1374 > select clear
    1375 
    1376 > select /F
    1377 
    1378 648 atoms, 655 bonds, 81 residues, 1 model selected 
    1379 
    1380 > color sel pink
    1381 
    1382 > color sel light coral
    1383 
    1384 > color sel pale violet red
    1385 
    1386 > color sel pale violet red
    1387 
    1388 > color sel pale violet red
    1389 
    1390 > color sel light pink
    1391 
    1392 > color sel pale violet red
    1393 
    1394 > color sel pink
    1395 
    1396 > color sel violet
    1397 
    1398 > color sel deep pink
    1399 
    1400 > color sel magenta
    1401 
    1402 > color sel dark violet
    1403 
    1404 > color sel tan
    1405 
    1406 > color sel burly wood
    1407 
    1408 > color sel light coral
    1409 
    1410 > color sel medium violet red
    1411 
    1412 > color sel pale violet red
    1413 
    1414 > select clear
    1415 
    1416 > select /F
    1417 
    1418 648 atoms, 655 bonds, 81 residues, 1 model selected 
    1419 
    1420 > color sel light coral
    1421 
    1422 > select clear
    1423 
    1424 > select /G
    1425 
    1426 815 atoms, 825 bonds, 106 residues, 1 model selected 
    1427 
    1428 > color sel medium aquamarine
    1429 
    1430 > color sel dark sea green
    1431 
    1432 > select clear
    1433 
    1434 > select /H
    1435 
    1436 707 atoms, 718 bonds, 91 residues, 1 model selected 
    1437 
    1438 > color sel light salmon
    1439 
    1440 > color sel dark salmon
    1441 
    1442 > color sel tan
    1443 
    1444 > color sel burly wood
    1445 
    1446 > color sel tan
    1447 
    1448 > color sel burly wood
    1449 
    1450 > select clear
    1451 
    1452 > select /E
    1453 
    1454 783 atoms, 794 bonds, 95 residues, 1 model selected 
    1455 
    1456 > color sel medium slate blue
    1457 
    1458 > select clear
    1459 
    1460 > select /U
    1461 
    1462 593 atoms, 599 bonds, 74 residues, 1 model selected 
    1463 
    1464 > color sel yellow
    1465 
    1466 > select clear
    1467 
    1468 > select /S
    1469 
    1470 205 atoms, 210 bonds, 23 residues, 1 model selected 
    1471 
    1472 > color sel red
    1473 
    1474 > color sel crimson
    1475 
    1476 > select /U
    1477 
    1478 593 atoms, 599 bonds, 74 residues, 1 model selected 
    1479 
    1480 > color sel khaki
    1481 
    1482 > color sel pale goldenrod
    1483 
    1484 > color sel gold
    1485 
    1486 > select clear
    1487 
    1488 > select /S
    1489 
    1490 205 atoms, 210 bonds, 23 residues, 1 model selected 
    1491 
    1492 > color sel maroon
    1493 
    1494 > color sel dark red
    1495 
    1496 > color sel fire brick
    1497 
    1498 > color sel brown
    1499 
    1500 > color sel tomato
    1501 
    1502 > color sel crimson
    1503 
    1504 > color sel crimson
    1505 
    1506 > select clear
    1507 
    1508 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1509 > map_model/overall map and model_20210920.cxs"
    1510 
    1511 > open "C:/Users/huasong/Desktop/SSX1 Model
    1512 > building/job059_postprocess_masked.mrc"
    1513 
    1514 Opened job059_postprocess_masked.mrc as #1, grid size 256,256,256, pixel 1.07,
    1515 shown at level 0.00431, step 1, values float32 
    1516 
    1517 > select #2
    1518 
    1519 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1520 
    1521 > hide #!1 models
    1522 
    1523 > open "C:/Users/huasong/Desktop/SSX1 Model
    1524 > building/job054_run_ct17_class001.mrc"
    1525 
    1526 Opened job054_run_ct17_class001.mrc as #3, grid size 256,256,256, pixel 1.07,
    1527 shown at level 0.003, step 1, values float32 
    1528 
    1529 > ~select #2
    1530 
    1531 Nothing selected 
    1532 
    1533 > select #3
    1534 
    1535 2 models selected 
    1536 
    1537 > show #!1 models
    1538 
    1539 > ~select #3
    1540 
    1541 Nothing selected 
    1542 
    1543 > hide #!3 models
    1544 
    1545 > volume #1 level 0.02036
    1546 
    1547 > volume #1 level 0.01434
    1548 
    1549 > surface dust #1 size 10.7
    1550 
    1551 > select #2
    1552 
    1553 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    1554 
    1555 > color zone #1 near sel & #2 distance 6.44
    1556 
    1557 > close #3
    1558 
    1559 > ui tool show "Color Zone"
    1560 
    1561 > color zone #1 near #2 distance 1.07
    1562 
    1563 > color zone #1 near #2 distance 4.44
    1564 
    1565 > volume #1 level 0.01037
    1566 
    1567 > volume #1 level 0.015
    1568 
    1569 > volume #1 level 0.016
    1570 
    1571 > volume splitbyzone #1
    1572 
    1573 Opened job059_postprocess_masked.mrc 0 as #3.1, grid size 256,256,256, pixel
    1574 1.07, shown at level 0.016, step 1, values float32 
    1575 Opened job059_postprocess_masked.mrc 1 as #3.2, grid size 256,256,256, pixel
    1576 1.07, shown at level 0.016, step 1, values float32 
    1577 Opened job059_postprocess_masked.mrc 2 as #3.3, grid size 256,256,256, pixel
    1578 1.07, shown at level 0.016, step 1, values float32 
    1579 Opened job059_postprocess_masked.mrc 3 as #3.4, grid size 256,256,256, pixel
    1580 1.07, shown at level 0.016, step 1, values float32 
    1581 Opened job059_postprocess_masked.mrc 4 as #3.5, grid size 256,256,256, pixel
    1582 1.07, shown at level 0.016, step 1, values float32 
    1583 Opened job059_postprocess_masked.mrc 5 as #3.6, grid size 256,256,256, pixel
    1584 1.07, shown at level 0.016, step 1, values float32 
    1585 Opened job059_postprocess_masked.mrc 6 as #3.7, grid size 256,256,256, pixel
    1586 1.07, shown at level 0.016, step 1, values float32 
    1587 Opened job059_postprocess_masked.mrc 7 as #3.8, grid size 256,256,256, pixel
    1588 1.07, shown at level 0.016, step 1, values float32 
    1589 
    1590 > volume #3.6 level 0.01178
    1591 
    1592 > surface dust #3.1 size 10.7
    1593 
    1594 > surface dust #3.2 size 10.7
    1595 
    1596 > surface dust #3.3 size 10.7
    1597 
    1598 > surface dust #3.4 size 10.7
    1599 
    1600 > surface dust #3.5 size 10.7
    1601 
    1602 > surface dust #3.6 size 10.7
    1603 
    1604 > surface dust #3.7 size 10.7
    1605 
    1606 > surface dust #3.8 size 10.7
    1607 
    1608 > ui tool show "Hide Dust"
    1609 
    1610 > surface dust #3.1 size 1.07
    1611 
    1612 > surface dust #3.1 size 1.07
    1613 
    1614 > surface dust #3.1 size 4.15
    1615 
    1616 > surface dust #3.1 size 5
    1617 
    1618 > surface dust #3.1 size 5
    1619 
    1620 > volume #3.7 level 0.01508
    1621 
    1622 > hide #2 models
    1623 
    1624 > volume #3.6 level 0.02093
    1625 
    1626 > volume #3.6 level 0.01143
    1627 
    1628 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1629 > map_model/overall map and model_20210920.cxs"
    1630 
    1631 > volume #1 level 0.02705
    1632 
    1633 > open "C:/Users/huasong/Desktop/SSX1 Model building/job059_postprocess.mrc"
    1634 
    1635 Opened job059_postprocess.mrc as #4, grid size 256,256,256, pixel 1.07, shown
    1636 at level 0.011, step 1, values float32 
    1637 
    1638 > hide #!1 models
    1639 
    1640 > hide #1.1 models
    1641 
    1642 > close #1
    1643 
    1644 > close #3
    1645 
    1646 > show #2 models
    1647 
    1648 > surface dust #4 size 6.44
    1649 
    1650 > color zone #4 near #2 distance 6.44
    1651 
    1652 > view sel
    1653 
    1654 > volume #4 level 0.01932
    1655 
    1656 > volume #4 level 0.01694
    1657 
    1658 > volume #4 level 0.01337
    1659 
    1660 > surface dust #4 size 10
    1661 
    1662 > surface dust #4 size 10
    1663 
    1664 > surface dust #4 size 15
    1665 
    1666 > surface dust #4 size 15
    1667 
    1668 > surface dust #4 size 10.7
    1669 
    1670 > surface dust #4 size 10.7
    1671 
    1672 > surface dust #4 size 10.7
    1673 
    1674 > surface dust #4 size 10.7
    1675 
    1676 > volume #4 level 0.01813
    1677 
    1678 > surface dust #4 size 10
    1679 
    1680 > surface dust #4 size 5
    1681 
    1682 > volume #4 level 0.02052
    1683 
    1684 > volume #4 level 0.021
    1685 
    1686 > volume splitbyzone #4
    1687 
    1688 Opened job059_postprocess.mrc 0 as #1.1, grid size 256,256,256, pixel 1.07,
    1689 shown at level 0.021, step 1, values float32 
    1690 Opened job059_postprocess.mrc 1 as #1.2, grid size 256,256,256, pixel 1.07,
    1691 shown at level 0.021, step 1, values float32 
    1692 Opened job059_postprocess.mrc 2 as #1.3, grid size 256,256,256, pixel 1.07,
    1693 shown at level 0.021, step 1, values float32 
    1694 Opened job059_postprocess.mrc 3 as #1.4, grid size 256,256,256, pixel 1.07,
    1695 shown at level 0.021, step 1, values float32 
    1696 Opened job059_postprocess.mrc 4 as #1.5, grid size 256,256,256, pixel 1.07,
    1697 shown at level 0.021, step 1, values float32 
    1698 Opened job059_postprocess.mrc 5 as #1.6, grid size 256,256,256, pixel 1.07,
    1699 shown at level 0.021, step 1, values float32 
    1700 Opened job059_postprocess.mrc 6 as #1.7, grid size 256,256,256, pixel 1.07,
    1701 shown at level 0.021, step 1, values float32 
    1702 Opened job059_postprocess.mrc 7 as #1.8, grid size 256,256,256, pixel 1.07,
    1703 shown at level 0.021, step 1, values float32 
    1704 
    1705 > surface dust #4 size 5
    1706 
    1707 > surface dust #4 size 5
    1708 
    1709 > surface dust #4 size 5
    1710 
    1711 > surface dust #1.1 size 10.7
    1712 
    1713 > surface dust #1.2 size 10.7
    1714 
    1715 > surface dust #1.3 size 10.7
    1716 
    1717 > surface dust #1.4 size 10.7
    1718 
    1719 > surface dust #1.5 size 10.7
    1720 
    1721 > surface dust #1.6 size 10.7
    1722 
    1723 > surface dust #1.7 size 10.7
    1724 
    1725 > surface dust #1.8 size 10.7
    1726 
    1727 > volume #1.7 level 0.01514
    1728 
    1729 > volume #1.7 level 0.01532
    1730 
    1731 > volume #1.6 level 0.01044
    1732 
    1733 > surface dust #1.6 size 2.08
    1734 
    1735 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1736 > map_model/overall map and model_20210929.cxs"
    1737 
    1738 > color zone #1.6 near #2 distance 6.44
    1739 
    1740 > volume splitbyzone #1.6
    1741 
    1742 Opened job059_postprocess.mrc 5 0 as #3.1, grid size 256,256,256, pixel 1.07,
    1743 shown at level 0.0104, step 1, values float32 
    1744 Opened job059_postprocess.mrc 5 1 as #3.2, grid size 256,256,256, pixel 1.07,
    1745 shown at level 0.0104, step 1, values float32 
    1746 Opened job059_postprocess.mrc 5 2 as #3.3, grid size 256,256,256, pixel 1.07,
    1747 shown at level 0.0104, step 1, values float32 
    1748 Opened job059_postprocess.mrc 5 3 as #3.4, grid size 256,256,256, pixel 1.07,
    1749 shown at level 0.0104, step 1, values float32 
    1750 Opened job059_postprocess.mrc 5 4 as #3.5, grid size 256,256,256, pixel 1.07,
    1751 shown at level 0.0104, step 1, values float32 
    1752 Opened job059_postprocess.mrc 5 5 as #3.6, grid size 256,256,256, pixel 1.07,
    1753 shown at level 0.0104, step 1, values float32 
    1754 Opened job059_postprocess.mrc 5 6 as #3.7, grid size 256,256,256, pixel 1.07,
    1755 shown at level 0.0104, step 1, values float32 
    1756 Opened job059_postprocess.mrc 5 7 as #3.8, grid size 256,256,256, pixel 1.07,
    1757 shown at level 0.0104, step 1, values float32 
    1758 
    1759 > surface dust #1.6 size 2.08
    1760 
    1761 > surface dust #1.1 size 10.7
    1762 
    1763 > surface dust #1.2 size 10.7
    1764 
    1765 > surface dust #1.3 size 10.7
    1766 
    1767 > surface dust #1.4 size 10.7
    1768 
    1769 > surface dust #1.5 size 10.7
    1770 
    1771 > surface dust #1.7 size 10.7
    1772 
    1773 > surface dust #1.8 size 10.7
    1774 
    1775 > surface dust #3.1 size 10.7
    1776 
    1777 > surface dust #3.2 size 10.7
    1778 
    1779 > surface dust #3.3 size 10.7
    1780 
    1781 > surface dust #3.4 size 10.7
    1782 
    1783 > surface dust #3.5 size 10.7
    1784 
    1785 > surface dust #3.6 size 10.7
    1786 
    1787 > surface dust #3.7 size 10.7
    1788 
    1789 > surface dust #3.8 size 10.7
    1790 
    1791 > surface undust #1.6
    1792 
    1793 > surface undust #1.6
    1794 
    1795 > surface undust #3.6
    1796 
    1797 > hide #!3.1 models
    1798 
    1799 > show #!3.1 models
    1800 
    1801 > hide #!3 models
    1802 
    1803 > show #!3 models
    1804 
    1805 > show #!4 models
    1806 
    1807 > hide #!4 models
    1808 
    1809 > hide #!3.6 models
    1810 
    1811 > show #!3.6 models
    1812 
    1813 > hide #!3.1 models
    1814 
    1815 > show #!3.1 models
    1816 
    1817 > volume #3.6 level 0.01678
    1818 
    1819 > hide #!3 models
    1820 
    1821 > close #3
    1822 
    1823 > show #!1.6 models
    1824 
    1825 > volume #1.6 level 0.01607
    1826 
    1827 > surface dust #1.6 size 6.44
    1828 
    1829 > surface dust #1.6 size 4
    1830 
    1831 > volume #1.6 level 0.01291
    1832 
    1833 > select clear
    1834 
    1835 > volume #1.6 level 0.0217
    1836 
    1837 > volume #1.6 level 0.01643
    1838 
    1839 > volume #1.6 level 0.01678
    1840 
    1841 > volume #1.6 level 0.015
    1842 
    1843 > transparency #1-2 20
    1844 
    1845 > transparency #1-2 10
    1846 
    1847 > select clear
    1848 
    1849 > select clear
    1850 
    1851 > preset "overall look" publication
    1852 
    1853 Preset expands to these ChimeraX commands:
    1854 
    1855    
    1856    
    1857     set bg white
    1858     graphics silhouettes t
    1859 
    1860  
    1861 
    1862 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1863 > map_model/overall map and model_20210929_001.cxs"
    1864 
    1865 > volume #!1.1-8 style surface
    1866 
    1867 > transparency #1-2 0
    1868 
    1869 > lighting full
    1870 
    1871 > lighting full
    1872 
    1873 > lighting soft
    1874 
    1875 > lighting simple
    1876 
    1877 > lighting soft
    1878 
    1879 > show #!4 models
    1880 
    1881 > hide #!4 models
    1882 
    1883 > hide #2 models
    1884 
    1885 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1886 > map_model/overall map and model_20210929_001.cxs"
    1887 
    1888 ——— End of log from Wed Sep 29 16:30:31 2021 ———
    1889 
    1890 opened ChimeraX session 
    1891 
    1892 > ui tool show "Hide Dust"
    1893 
    1894 > surface dust #1.1 size 1.07
    1895 
    1896 > surface dust #1.6 size 2
    1897 
    1898 > surface dust #1.6 size 5
    1899 
    1900 > surface dust #1.1 size 10.7
    1901 
    1902 > surface dust #1.2 size 10.7
    1903 
    1904 > surface dust #1.3 size 10.7
    1905 
    1906 > surface dust #1.4 size 10.7
    1907 
    1908 > surface dust #1.5 size 10.7
    1909 
    1910 > surface dust #1.6 size 10.7
    1911 
    1912 > surface dust #1.7 size 10.7
    1913 
    1914 > surface dust #1.8 size 10.7
    1915 
    1916 > surface undust #1.6
    1917 
    1918 > surface dust #1.6 size 2
    1919 
    1920 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1921 > map_model/overall map and model_20210929_001.cxs"
    1922 
    1923 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1924 > map_model/overall map and model_20210929_001.png" width 3206 height 2000
    1925 > supersample 4
    1926 
    1927 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1928 > map_model/overall map and model_20210929_002.cxs"
    1929 
    1930 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1931 > map_model/overall map and model_20210929_002.png" width 3206 height 2000
    1932 > supersample 4
    1933 
    1934 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1935 > map_model/overall map and model_20210929_003.cxs"
    1936 
    1937 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1938 > map_model/overall map and model_20210929_003.png" width 3206 height 2000
    1939 > supersample 4
    1940 
    1941 > volume #1.7 level 0.01551
    1942 
    1943 > show #2 models
    1944 
    1945 > hide #2 models
    1946 
    1947 > surface dust #1.6 size 2
    1948 
    1949 > surface dust #1.6 size 2
    1950 
    1951 > surface dust #1.6 size 3
    1952 
    1953 > surface dust #1.6 size 2
    1954 
    1955 > surface dust #1.6 size 2.5
    1956 
    1957 > select clear
    1958 
    1959 > ui tool show "Side View"
    1960 
    1961 > volume #1.8 level 0.01779
    1962 
    1963 > view
    1964 
    1965 > volume #1.8 level 0.01645
    1966 
    1967 > show #2 models
    1968 
    1969 > hide #!1 models
    1970 
    1971 > select /I:0
    1972 
    1973 22 atoms, 24 bonds, 1 residue, 1 model selected 
    1974 
    1975 > show #!1 models
    1976 
    1977 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1978 > map_model/overall map and model_20210929_001.cxs"
    1979 
    1980 No map chosen to save 
    1981 
    1982 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    1983 > map_model/overall map and model_20210929_001.tiff" width 3206 height 2000
    1984 > supersample 4
    1985 
    1986 > select clear
    1987 
    1988 > surface dust #1.6 size 3
    1989 
    1990 > surface dust #1.6 size 2
    1991 
    1992 > surface dust #1.6 size 2.5
    1993 
    1994 > surface dust #1.6 size 2
    1995 
    1996 > surface dust #1.6 size 3
    1997 
    1998 > surface dust #1.6 size 4
    1999 
    2000 > surface dust #1.6 size 2
    2001 
    2002 > surface dust #1.6 size 2.5
    2003 
    2004 > hide #2 models
    2005 
    2006 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    2007 > map_model/overall map and model_20210929_001.cxs"
    2008 
    2009 ——— End of log from Wed Sep 29 16:47:19 2021 ———
    2010 
    2011 opened ChimeraX session 
    2012 
    2013 > hide #!1 models
    2014 
    2015 > show #2 models
    2016 
    2017 > show #!1 models
    2018 
    2019 > hide #!1.1 models
    2020 
    2021 > hide #!1.2 models
    2022 
    2023 > hide #!1.3 models
    2024 
    2025 > hide #!1.4 models
    2026 
    2027 > hide #!1.6 models
    2028 
    2029 > hide #!1.7 models
    2030 
    2031 > hide #2 models
    2032 
    2033 > show #2 models
    2034 
    2035 > hide #!1.5 models
    2036 
    2037 > transparency #2#1.8#!1 50
    2038 
    2039 > select /I:0
    2040 
    2041 22 atoms, 24 bonds, 1 residue, 1 model selected 
    2042 
    2043 > select clear
    2044 
    2045 > select /S
    2046 
    2047 205 atoms, 210 bonds, 23 residues, 1 model selected 
    2048 
    2049 > show sel target ab
    2050 
    2051 > style sel stick
    2052 
    2053 Changed 205 atom styles 
    2054 
    2055 > color sel byhetero
    2056 
    2057 > style sel ball
    2058 
    2059 Changed 205 atom styles 
    2060 
    2061 > select clear
    2062 
    2063 > select /S
    2064 
    2065 205 atoms, 210 bonds, 23 residues, 1 model selected 
    2066 
    2067 > style sel ball
    2068 
    2069 Changed 205 atom styles 
    2070 
    2071 > style sel stick
    2072 
    2073 Changed 205 atom styles 
    2074 
    2075 > select clear
    2076 
    2077 > volume #1.8 level 0.01752
    2078 
    2079 > select /I
    2080 
    2081 2822 atoms, 3168 bonds, 137 residues, 1 model selected 
    2082 
    2083 > select clear
    2084 
    2085 > save "C:/Users/huasong/Desktop/SSX1 Model building/zuotu/Overall
    2086 > map_model/overall model_20210929.cxs"
    2087 
    2088 ——— End of log from Wed Sep 29 18:27:07 2021 ———
    2089 
    2090 opened ChimeraX session 
    2091 
    2092 > show #!4 models
    2093 
    2094 > hide #!4 models
    2095 
    2096 > hide #!1 models
    2097 
    2098 > show #!1 models
    2099 
    2100 > hide #!1 models
    2101 
    2102 > show #!1 models
    2103 
    2104 > show #!4 models
    2105 
    2106 > ui tool show "Side View"
    2107 
    2108 > save "D:/Documents/Map/SSX1/SSX1 Model building/20210929_TZB/overall map and
    2109 > model_20210929_004.cxs"
    2110 
    2111 ——— End of log from Wed Sep 29 18:50:26 2021 ———
    2112 
    2113 opened ChimeraX session 
    2114 
    2115 > hide #!4 models
    2116 
    2117 > show #!1.7 models
    2118 
    2119 > show #!1.6 models
    2120 
    2121 > show #!1.5 models
    2122 
    2123 > show #!1.4 models
    2124 
    2125 > show #!1.3 models
    2126 
    2127 > show #!1.2 models
    2128 
    2129 > hide #!1.2 models
    2130 
    2131 > show #!1.2 models
    2132 
    2133 > show #!1.1 models
    2134 
    2135 > hide #!1.1 models
    2136 
    2137 > show #!1.1 models
    2138 
    2139 > hide #!1.1 models
    2140 
    2141 > hide #2 models
    2142 
    2143 > show #!1.1 models
    2144 
    2145 > hide #!1.6 models
    2146 
    2147 > show #!1.6 models
    2148 
    2149 > hide #!1.5 models
    2150 
    2151 > show #2 models
    2152 
    2153 > show #!1.5 models
    2154 
    2155 > hide #2 models
    2156 
    2157 > show #2 models
    2158 
    2159 > hide #2 models
    2160 
    2161 > show #2 models
    2162 
    2163 > select clear
    2164 
    2165 > select #1.8
    2166 
    2167 2 models selected 
    2168 
    2169 > volume sel style surface
    2170 
    2171 > transparency sel 0
    2172 
    2173 > select clear
    2174 
    2175 Drag select of 1.2 job059_postprocess.mrc 1 , 1.3 job059_postprocess.mrc 2 ,
    2176 1.4 job059_postprocess.mrc 3 , 1.5 job059_postprocess.mrc 4 , 1.6
    2177 job059_postprocess.mrc 5 , 1.7 job059_postprocess.mrc 6 , 1.8
    2178 job059_postprocess.mrc 7 , 137 atoms, 1122 residues, 120 bonds 
    2179 
    2180 > color sel byhetero
    2181 
    2182 > coulombic sel
    2183 
    2184 The following heavy (non-hydrogen) atoms are missing, which may result in
    2185 inaccurate electrostatics: 
    2186 /G LYS 118 CD 
    2187 /G LYS 118 CE 
    2188 /G LYS 118 NZ 
    2189 /G LYS 118 CG 
    2190 
    2191 Deleting 5' phosphates from: /J DC -73, /I DT -63 
    2192 Using Amber 20 recommended default charges and atom types for standard
    2193 residues 
    2194 Coulombic values for 20210929_final_for chimeraX_.pdb_A SES surface #2.1:
    2195 minimum, -13.42, mean 1.84, maximum 12.71 
    2196 Coulombic values for 20210929_final_for chimeraX_.pdb_B SES surface #2.2:
    2197 minimum, -8.84, mean 3.94, maximum 24.66 
    2198 Coulombic values for 20210929_final_for chimeraX_.pdb_C SES surface #2.3:
    2199 minimum, -14.45, mean 2.28, maximum 16.17 
    2200 Coulombic values for 20210929_final_for chimeraX_.pdb_D SES surface #2.4:
    2201 minimum, -12.45, mean 1.25, maximum 11.99 
    2202 Coulombic values for 20210929_final_for chimeraX_.pdb_E SES surface #2.5:
    2203 minimum, -11.62, mean 1.63, maximum 12.32 
    2204 Coulombic values for 20210929_final_for chimeraX_.pdb_F SES surface #2.6:
    2205 minimum, -8.12, mean 3.47, maximum 17.60 
    2206 Coulombic values for 20210929_final_for chimeraX_.pdb_G SES surface #2.7:
    2207 minimum, -16.37, mean 2.12, maximum 15.08 
    2208 Coulombic values for 20210929_final_for chimeraX_.pdb_H SES surface #2.8:
    2209 minimum, -12.68, mean 1.25, maximum 11.97 
    2210 Coulombic values for 20210929_final_for chimeraX_.pdb_I SES surface #2.9:
    2211 minimum, -23.98, mean -14.26, maximum -3.09 
    2212 Coulombic values for 20210929_final_for chimeraX_.pdb_J SES surface #2.10:
    2213 minimum, -25.82, mean -14.24, maximum -2.88 
    2214 Coulombic values for 20210929_final_for chimeraX_.pdb_S SES surface #2.11:
    2215 minimum, -11.34, mean -0.79, maximum 9.56 
    2216 Coulombic values for 20210929_final_for chimeraX_.pdb_U SES surface #2.12:
    2217 minimum, -12.75, mean -0.30, maximum 18.17 
    2218 To also show corresponding color key, enter the above coulombic command and
    2219 add key true 
    2220 
    2221 > select /S
    2222 
    2223 205 atoms, 210 bonds, 23 residues, 1 model selected 
    2224 
    2225 > hide sel surfaces
    2226 
    2227 > select /U
    2228 
    2229 593 atoms, 599 bonds, 74 residues, 1 model selected 
    2230 
    2231 > hide sel surfaces
    2232 
    2233 > select clear
    2234 
    2235 > select /S
    2236 
    2237 205 atoms, 210 bonds, 23 residues, 1 model selected 
    2238 
    2239 > color (#!2 & sel) magenta
    2240 
    2241 > hide #!1.8 models
    2242 
    2243 > select clear
    2244 
    2245 > select /S:166
    2246 
    2247 10 atoms, 10 bonds, 1 residue, 1 model selected 
    2248 
    2249 > select /C:89@OD1
    2250 
    2251 1 atom, 1 residue, 1 model selected 
    2252 
    2253 > select /S:172
    2254 
    2255 9 atoms, 8 bonds, 1 residue, 1 model selected 
    2256 
    2257 > select /E:41@CE1
    2258 
    2259 1 atom, 1 residue, 1 model selected 
    2260 
    2261 > select /S:184
    2262 
    2263 9 atoms, 8 bonds, 1 residue, 1 model selected 
    2264 
    2265 > style sel stick
    2266 
    2267 Changed 9 atom styles 
    2268 
    2269 > color sel byhetero
    2270 
    2271 > select clear
    2272 
    2273 > view
    2274 
    2275 > hide #!1 models
    2276 
    2277 Drag select of 20210929_final_for chimeraX_.pdb_A SES surface,
    2278 20210929_final_for chimeraX_.pdb_B SES surface, 20210929_final_for
    2279 chimeraX_.pdb_C SES surface, 20210929_final_for chimeraX_.pdb_D SES surface,
    2280 20210929_final_for chimeraX_.pdb_E SES surface, 20210929_final_for
    2281 chimeraX_.pdb_F SES surface, 20210929_final_for chimeraX_.pdb_G SES surface,
    2282 20210929_final_for chimeraX_.pdb_H SES surface, 20210929_final_for
    2283 chimeraX_.pdb_I SES surface, 20210929_final_for chimeraX_.pdb_J SES surface,
    2284 137 atoms, 1122 residues, 120 bonds 
    2285 
    2286 > hide sel surfaces
    2287 
    2288 > select clear
    2289 
    2290 > select /S
    2291 
    2292 205 atoms, 210 bonds, 23 residues, 1 model selected 
    2293 
    2294 > hide sel atoms
    2295 
    2296 > select clear
    2297 
    2298 > show #!1.8 models
    2299 
    2300 > hide #!1.8 models
    2301 
    2302 > show #!1.8 models
    2303 
    2304 > select /A
    2305 
    2306 801 atoms, 813 bonds, 97 residues, 1 model selected 
    2307 
    2308 > hide #!1.2 models
    2309 
    2310 > show #!1.2 models
    2311 
    2312 > ui tool show "Color Actions"
    2313 
    2314 > hide #!1.2 models
    2315 
    2316 > color sel dodger blue
    2317 
    2318 > show #!1.2 models
    2319 
    2320 > select clear
    2321 
    2322 > hide #!1.2 models
    2323 
    2324 > show #!1.2 models
    2325 
    2326 > hide #!1 models
    2327 
    2328 > select /E
    2329 
    2330 783 atoms, 794 bonds, 95 residues, 1 model selected 
    2331 
    2332 > color sel dodger blue
    2333 
    2334 > color sel cornflower blue
    2335 
    2336 > color sel royal blue
    2337 
    2338 > color sel cornflower blue
    2339 
    2340 > color sel dodger blue
    2341 
    2342 > color sel cornflower blue
    2343 
    2344 > color sel dodger blue
    2345 
    2346 > color sel cornflower blue
    2347 
    2348 > color sel slate blue
    2349 
    2350 > color sel cornflower blue
    2351 
    2352 > color sel deep sky blue
    2353 
    2354 > color sel cornflower blue
    2355 
    2356 > color sel dodger blue
    2357 
    2358 > select clear
    2359 
    2360 > show #!1 models
    2361 
    2362 > hide #!1 models
    2363 
    2364 > select /D
    2365 
    2366 707 atoms, 718 bonds, 91 residues, 1 model selected 
    2367 
    2368 > select /C
    2369 
    2370 825 atoms, 835 bonds, 107 residues, 1 model selected 
    2371 
    2372 > color sel forest green
    2373 
    2374 > color sel dark sea green
    2375 
    2376 > color sel medium sea green
    2377 
    2378 > color sel forest green
    2379 
    2380 > select clear
    2381 
    2382 > select /G
    2383 
    2384 815 atoms, 825 bonds, 106 residues, 1 model selected 
    2385 
    2386 > color sel forest green
    2387 
    2388 > select clear
    2389 
    2390 > show #!1 models
    2391 
    2392 > hide #!1.4 models
    2393 
    2394 > show #!1.4 models
    2395 
    2396 > hide #!1.4 models
    2397 
    2398 > show #!1.4 models
    2399 
    2400 > hide #!1.6 models
    2401 
    2402 > show #!1.6 models
    2403 
    2404 > lighting soft
    2405 
    2406 > hide #!1 models
    2407 
    2408 > lighting simple
    2409 
    2410 > select /I
    2411 
    2412 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    2413 
    2414 > color sel light gray
    2415 
    2416 > color sel dark gray
    2417 
    2418 > color sel light gray
    2419 
    2420 > color sel gray
    2421 
    2422 > color sel dark gray
    2423 
    2424 > color sel light gray
    2425 
    2426 > color sel dark gray
    2427 
    2428 > select clear
    2429 
    2430 > ui tool show "Side View"
    2431 
    2432 > lighting flat
    2433 
    2434 > lighting simple
    2435 
    2436 > lighting full
    2437 
    2438 > lighting full
    2439 
    2440 > lighting simple
    2441 
    2442 > lighting shadows true
    2443 
    2444 > lighting shadows false
    2445 
    2446 > graphics silhouettes false
    2447 
    2448 > lighting full
    2449 
    2450 > lighting flat
    2451 
    2452 > lighting simple
    2453 
    2454 > lighting flat
    2455 
    2456 > lighting simple
    2457 
    2458 > lighting simple
    2459 
    2460 > lighting simple
    2461 
    2462 > lighting simple
    2463 
    2464 > graphics silhouettes false
    2465 
    2466 > lighting flat
    2467 
    2468 > select /S
    2469 
    2470 205 atoms, 210 bonds, 23 residues, 1 model selected 
    2471 
    2472 > show sel atoms
    2473 
    2474 > select clear
    2475 
    2476 > view
    2477 
    2478 > lighting shadows true intensity 0.5
    2479 
    2480 > lighting shadows false
    2481 
    2482 > graphics silhouettes false
    2483 
    2484 > lighting shadows true
    2485 
    2486 > graphics silhouettes true
    2487 
    2488 > lighting flat
    2489 
    2490 > lighting shadows true intensity 0.5
    2491 
    2492 > lighting shadows false
    2493 
    2494 > lighting shadows true
    2495 
    2496 > lighting shadows false
    2497 
    2498 > lighting shadows true
    2499 
    2500 > lighting shadows false
    2501 
    2502 > lighting full
    2503 
    2504 > lighting soft
    2505 
    2506 > lighting simple
    2507 
    2508 > lighting soft
    2509 
    2510 > lighting flat
    2511 
    2512 > lighting shadows true intensity 0.5
    2513 
    2514 > lighting shadows false
    2515 
    2516 > lighting flat
    2517 
    2518 > lighting flat
    2519 
    2520 > lighting shadows true intensity 0.5
    2521 
    2522 > lighting flat
    2523 
    2524 > lighting shadows true intensity 0.5
    2525 
    2526 > lighting shadows false
    2527 
    2528 > lighting simple
    2529 
    2530 > lighting shadows true
    2531 
    2532 > lighting shadows false
    2533 
    2534 > show #!1 models
    2535 
    2536 > lighting simple
    2537 
    2538 > lighting soft
    2539 
    2540 > lighting flat
    2541 
    2542 > lighting soft
    2543 
    2544 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall model-
    2545 > change colors.cxs" includeMaps true
    2546 
    2547 > hide #!1 models
    2548 
    2549 > lighting flat
    2550 
    2551 > show #!1 models
    2552 
    2553 > lighting soft
    2554 
    2555 > camera
    2556 
    2557 Camera parameters: 
    2558 type: mono 
    2559 position: -37.092 576.05 218.05 
    2560 view direction: 0.40142 -0.90224 -0.15758 
    2561 field of view: 30 degrees 
    2562 
    2563 > preset "molecular surfaces" "ghostly white"
    2564 
    2565 Changed 12158 atom styles 
    2566 Preset expands to these ChimeraX commands:
    2567 
    2568    
    2569    
    2570     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2571     surface
    2572     color white targ s trans 80
    2573 
    2574  
    2575 
    2576 > preset "molecular surfaces" "chain id coloring (opaque)"
    2577 
    2578 Changed 0 atom styles 
    2579 Preset expands to these ChimeraX commands:
    2580 
    2581    
    2582    
    2583     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2584     surface
    2585     color bychain targ s trans 0
    2586 
    2587  
    2588 
    2589 > preset "molecular surfaces" "atomic coloring (transparent)"
    2590 
    2591 Changed 0 atom styles 
    2592 Preset expands to these ChimeraX commands:
    2593 
    2594    
    2595    
    2596     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2597     surface
    2598     color fromatoms targ s trans 70
    2599 
    2600  
    2601 
    2602 > preset "overall look" publication
    2603 
    2604 Preset expands to these ChimeraX commands:
    2605 
    2606    
    2607    
    2608     set bg white
    2609     graphics silhouettes t
    2610 
    2611  
    2612 
    2613 > preset cartoons/nucleotides ribbons/slabs
    2614 
    2615 Changed 0 atom styles 
    2616 Preset expands to these ChimeraX commands:
    2617 
    2618    
    2619    
    2620     show nucleic
    2621     hide protein|solvent|H
    2622     surf hide
    2623     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2624     cartoon
    2625     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    2626     cartoon style ~(nucleic|strand) x round
    2627     cartoon style (nucleic|strand) x rect
    2628     nucleotides tube/slab shape box
    2629 
    2630  
    2631 
    2632 > preset cartoons/nucleotides cylinders/stubs
    2633 
    2634 Changed 0 atom styles 
    2635 Preset expands to these ChimeraX commands:
    2636 
    2637    
    2638    
    2639     show nucleic
    2640     hide protein|solvent|H
    2641     surf hide
    2642     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2643     cartoon
    2644     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    2645     cartoon style ~(nucleic|strand) x round
    2646     cartoon style (nucleic|strand) x rect
    2647     cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    2648     cartoon style nucleic x round width 1.6 thick 1.6
    2649     nucleotides stubs
    2650 
    2651  
    2652 
    2653 > undo
    2654 
    2655 > undo
    2656 
    2657 > undo
    2658 
    2659 > undo
    2660 
    2661 > undo
    2662 
    2663 > undo
    2664 
    2665 > ui tool show "Side View"
    2666 
    2667 > ui tool show "Side View"
    2668 
    2669 > ui tool show "Side View"
    2670 
    2671 > view
    2672 
    2673 > view
    2674 
    2675 > set bgColor black
    2676 
    2677 > set bgColor gray
    2678 
    2679 > set bgColor white
    2680 
    2681 Drag select of 1.2 job059_postprocess.mrc 1 , 1.3 job059_postprocess.mrc 2 ,
    2682 1.4 job059_postprocess.mrc 3 , 1.5 job059_postprocess.mrc 4 , 1.6
    2683 job059_postprocess.mrc 5 , 1.7 job059_postprocess.mrc 6 , 1.8
    2684 job059_postprocess.mrc 7 , 137 atoms, 1122 residues, 120 bonds 
    2685 
    2686 > select clear
    2687 
    2688 > hide #!1 models
    2689 
    2690 > show #!1 models
    2691 
    2692 > ui mousemode right "mark maximum"
    2693 
    2694 > ui mousemode right "mark plane"
    2695 
    2696 > ui mousemode right "mark surface"
    2697 
    2698 > ui mousemode right "mark center"
    2699 
    2700 > ui mousemode right clip
    2701 
    2702 > ui mousemode right translate
    2703 
    2704 > ui mousemode right zoom
    2705 
    2706 > ui mousemode right "move picked models"
    2707 
    2708 > view matrix models #1.4,1,0,0,-9.6083,0,1,0,-4.4321,0,0,1,17.572
    2709 
    2710 > undo
    2711 
    2712 > ui mousemode right distance
    2713 
    2714 > ui mousemode right distance
    2715 
    2716 > volume #!1.1-8 step 1
    2717 
    2718 > volume #!1.1-8 step 2
    2719 
    2720 > undo
    2721 
    2722 > show #!1 models
    2723 
    2724 > transparency #2.1-12#1.1.1#1.2.1#1.3.1#1.4.1#1.5.1#1.6.1#1.7.1#1.8.1 50
    2725 
    2726 > transparency #2.1-12#1.1.1#1.2.1#1.3.1#1.4.1#1.5.1#1.6.1#1.7.1#1.8.1 0
    2727 
    2728 > hide #!2 models
    2729 
    2730 > show #!2 models
    2731 
    2732 > hide #!1.8 models
    2733 
    2734 > show #!1.8 models
    2735 
    2736 > volume #!1.1-8 step 2
    2737 
    2738 > volume #!1.1-8 step 1
    2739 
    2740 > hide #!1 models
    2741 
    2742 > show #!1 models
    2743 
    2744 > select /C
    2745 
    2746 825 atoms, 835 bonds, 107 residues, 1 model selected 
    2747 
    2748 > hide #!1.4 models
    2749 
    2750 > ui tool show "Color Actions"
    2751 
    2752 > color sel medium spring green
    2753 
    2754 > color sel green
    2755 
    2756 > hide #!1.8 models
    2757 
    2758 > hide #!1 models
    2759 
    2760 > select clear
    2761 
    2762 > lighting simple
    2763 
    2764 > graphics silhouettes false
    2765 
    2766 > ui mousemode right translate
    2767 
    2768 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/1.tif" width
    2769 > 2924 height 2000 supersample 4 transparentBackground true
    2770 
    2771 > show #!1 models
    2772 
    2773 > view
    2774 
    2775 > view
    2776 
    2777 > lighting flat
    2778 
    2779 > lighting soft
    2780 
    2781 > lighting soft ambientIntensity 1.8
    2782 
    2783 > lighting soft ambientIntensity 2
    2784 
    2785 > lighting soft intensity 0.2
    2786 
    2787 > lighting soft intensity 0.4
    2788 
    2789 > view
    2790 
    2791 > show #!1.8 models
    2792 
    2793 > hide #!1 models
    2794 
    2795 > show #!1 models
    2796 
    2797 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    2798 > view-2-change color.tif" width 2924 height 2000 supersample 4
    2799 > transparentBackground true
    2800 
    2801 > show #!1.4 models
    2802 
    2803 > hide #!1 models
    2804 
    2805 > select /C
    2806 
    2807 825 atoms, 835 bonds, 107 residues, 1 model selected 
    2808 
    2809 > ui tool show "Color Actions"
    2810 
    2811 > color sel medium sea green
    2812 
    2813 > hide #!1.4 models
    2814 
    2815 > show #!1.4 models
    2816 
    2817 > hide #!1.4 models
    2818 
    2819 > show #!1.4 models
    2820 
    2821 > select clear
    2822 
    2823 > hide #!1 models
    2824 
    2825 > graphics silhouettes false
    2826 
    2827 > graphics silhouettes true
    2828 
    2829 > lighting soft
    2830 
    2831 > lighting simple
    2832 
    2833 > lighting soft
    2834 
    2835 > lighting soft intensity 0.6
    2836 
    2837 > lighting soft intensity 0.5
    2838 
    2839 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    2840 > view-2-change color-atom.tif" width 2924 height 2000 supersample 4
    2841 > transparentBackground true
    2842 
    2843 > show #!1 models
    2844 
    2845 > lighting soft
    2846 
    2847 > lighting simple
    2848 
    2849 > lighting soft
    2850 
    2851 > lighting soft intensity 0.5
    2852 
    2853 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    2854 > view-3-change color.tif" width 2924 height 2000 supersample 4
    2855 > transparentBackground true
    2856 
    2857 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/20211006overall
    2858 > model-change colors-2.cxs" includeMaps true
    2859 
    2860 > hide #!1 models
    2861 
    2862 > preset cartoons/nucleotides cylinders/stubs
    2863 
    2864 Changed 12158 atom styles 
    2865 Preset expands to these ChimeraX commands:
    2866 
    2867    
    2868    
    2869     show nucleic
    2870     hide protein|solvent|H
    2871     surf hide
    2872     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2873     cartoon
    2874     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    2875     cartoon style ~(nucleic|strand) x round
    2876     cartoon style (nucleic|strand) x rect
    2877     cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    2878     cartoon style nucleic x round width 1.6 thick 1.6
    2879     nucleotides stubs
    2880 
    2881  
    2882 
    2883 > lighting soft
    2884 
    2885 > lighting soft intensity 0.3
    2886 
    2887 > lighting soft intensity 0.2
    2888 
    2889 > lighting soft intensity 0.1
    2890 
    2891 > lighting shadows true
    2892 
    2893 > lighting soft intensity 0.2
    2894 
    2895 > preset cartoons/nucleotides ribbons/slabs
    2896 
    2897 Changed 0 atom styles 
    2898 Preset expands to these ChimeraX commands:
    2899 
    2900    
    2901    
    2902     show nucleic
    2903     hide protein|solvent|H
    2904     surf hide
    2905     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2906     cartoon
    2907     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    2908     cartoon style ~(nucleic|strand) x round
    2909     cartoon style (nucleic|strand) x rect
    2910     nucleotides tube/slab shape box
    2911 
    2912  
    2913 
    2914 > preset cartoons/nucleotides cylinders/stubs
    2915 
    2916 Changed 0 atom styles 
    2917 Preset expands to these ChimeraX commands:
    2918 
    2919    
    2920    
    2921     show nucleic
    2922     hide protein|solvent|H
    2923     surf hide
    2924     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    2925     cartoon
    2926     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    2927     cartoon style ~(nucleic|strand) x round
    2928     cartoon style (nucleic|strand) x rect
    2929     cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    2930     cartoon style nucleic x round width 1.6 thick 1.6
    2931     nucleotides stubs
    2932 
    2933  
    2934 
    2935 > select /I
    2936 
    2937 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    2938 
    2939 > hide sel atoms
    2940 
    2941 > select /J
    2942 
    2943 2792 atoms, 3129 bonds, 137 residues, 1 model selected 
    2944 
    2945 > hide sel atoms
    2946 
    2947 > select clear
    2948 
    2949 > lighting flat
    2950 
    2951 > lighting soft
    2952 
    2953 > lighting simple
    2954 
    2955 > lighting simple
    2956 
    2957 > lighting soft
    2958 
    2959 > lighting soft intensity 0.2
    2960 
    2961 > lighting soft intensity 0.15
    2962 
    2963 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    2964 > view-2-change color-atom-cylinders.tif" width 2924 height 2000 supersample 4
    2965 > transparentBackground true
    2966 
    2967 > select /G
    2968 
    2969 815 atoms, 825 bonds, 106 residues, 1 model selected 
    2970 
    2971 > color sel lime green
    2972 
    2973 > color sel medium aquamarine
    2974 
    2975 > color sel medium sea green
    2976 
    2977 > select clear
    2978 
    2979 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    2980 > view-2-change color-atom-cylinders.tif" width 2924 height 2000 supersample 4
    2981 > transparentBackground true
    2982 
    2983 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    2984 > view-2-change color-atom-cylinders-2.tif" width 2924 height 2000 supersample
    2985 > 4 transparentBackground true
    2986 
    2987 > graphics silhouettes true width 1.5
    2988 
    2989 > graphics silhouettes true width 1.3
    2990 
    2991 > graphics silhouettes true width 2
    2992 
    2993 > graphics silhouettes true width 1.5
    2994 
    2995 > cartoon style cylinder width 5
    2996 
    2997 Expected an atoms specifier or a keyword 
    2998 
    2999 > cartoon style helix modeHelix tube radius 5
    3000 
    3001 > cartoon style helix modeHelix tube radius 3
    3002 
    3003 > cartoon style helix modeHelix tube radius 2.5
    3004 
    3005 > cartoon style helix modeHelix tube radius 15
    3006 
    3007 > cartoon style helix modeHelix tube radius 2.2
    3008 
    3009 > cartoon style helix modeHelix tube radius 2.5
    3010 
    3011 > cartoon style loop modeh tube rad 2.5
    3012 
    3013 Expected an atoms specifier or a keyword 
    3014 
    3015 > cartoon style sheet modeh tube rad 2.5
    3016 
    3017 Expected an atoms specifier or a keyword 
    3018 
    3019 > cartoon style sheet modeh tube rad 2.5
    3020 
    3021 Expected an atoms specifier or a keyword 
    3022 
    3023 > cartoon style sheet modeh tube rad 2.5
    3024 
    3025 Expected an atoms specifier or a keyword 
    3026 
    3027 > cartoon style protein width 0.5 thickness 0.5
    3028 
    3029 > cartoon style protein width 2 thickness 2
    3030 
    3031 > cartoon style protein width 1 thickness 1
    3032 
    3033 > cartoon style protein width 0.6 thickness 0.6
    3034 
    3035 > preset cartoons/nucleotides ribbons/slabs
    3036 
    3037 Changed 0 atom styles 
    3038 Preset expands to these ChimeraX commands:
    3039 
    3040    
    3041    
    3042     show nucleic
    3043     hide protein|solvent|H
    3044     surf hide
    3045     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    3046     cartoon
    3047     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    3048     cartoon style ~(nucleic|strand) x round
    3049     cartoon style (nucleic|strand) x rect
    3050     nucleotides tube/slab shape box
    3051 
    3052  
    3053 
    3054 > select /I
    3055 
    3056 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    3057 
    3058 > hide sel atoms
    3059 
    3060 > select /J
    3061 
    3062 2792 atoms, 3129 bonds, 137 residues, 1 model selected 
    3063 
    3064 > hide sel atoms
    3065 
    3066 > select clear
    3067 
    3068 > lighting soft
    3069 
    3070 > cartoon style HELIX width 3 thick 1
    3071 
    3072 Expected an atoms specifier or a keyword 
    3073 
    3074 > cartoon style helix width 3 thickness 1
    3075 
    3076 > cartoon style helix width 3 thickness 0.7
    3077 
    3078 > cartoon style helix width 2.5 thickness 0.7
    3079 
    3080 > preset cartoons/nucleotides ribbons/slabs
    3081 
    3082 Changed 0 atom styles 
    3083 Preset expands to these ChimeraX commands:
    3084 
    3085    
    3086    
    3087     show nucleic
    3088     hide protein|solvent|H
    3089     surf hide
    3090     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    3091     cartoon
    3092     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    3093     cartoon style ~(nucleic|strand) x round
    3094     cartoon style (nucleic|strand) x rect
    3095     nucleotides tube/slab shape box
    3096 
    3097  
    3098 
    3099 > cartoon style helix width 2.5 thickness 0.7
    3100 
    3101 > cartoon style helix width 3 thickness 0.7
    3102 
    3103 > cartoon style protein width 3 thickness 0.7
    3104 
    3105 > cartoon style protein width 2 thickness 0.5
    3106 
    3107 > cartoon style protein width 3 thickness 0.5
    3108 
    3109 > cartoon style protein width 3 thickness 1
    3110 
    3111 > lighting soft intensity 0.4
    3112 
    3113 > select /I
    3114 
    3115 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    3116 
    3117 > hide sel atoms
    3118 
    3119 > select /J
    3120 
    3121 2792 atoms, 3129 bonds, 137 residues, 1 model selected 
    3122 
    3123 > hide sel atoms
    3124 
    3125 > select clear
    3126 
    3127 > cartoon style protein width 1 thickness 0.5
    3128 
    3129 > cartoon style protein width 2 thickness 0.5
    3130 
    3131 > cartoon style protein width 3 thickness 0.5
    3132 
    3133 > cartoon style protein width 2.5 thickness 0.7
    3134 
    3135 > lighting soft intensity 0.5
    3136 
    3137 > lighting soft intensity 0.1
    3138 
    3139 > lighting soft intensity 0.3
    3140 
    3141 > graphics silhouettes false
    3142 
    3143 > graphics silhouettes true
    3144 
    3145 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    3146 > view-2-change color-atom-rebion.tif" width 2924 height 2000 supersample 4
    3147 > transparentBackground true
    3148 
    3149 > lighting soft intensity 0.4
    3150 
    3151 > lighting soft intensity 0.3
    3152 
    3153 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    3154 > view-2-change color-atom-rebion-2.tif" width 2924 height 2000 supersample 4
    3155 > transparentBackground true
    3156 
    3157 > preset cartoons/nucleotides cylinders/stubs
    3158 
    3159 Changed 0 atom styles 
    3160 Preset expands to these ChimeraX commands:
    3161 
    3162    
    3163    
    3164     show nucleic
    3165     hide protein|solvent|H
    3166     surf hide
    3167     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    3168     cartoon
    3169     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    3170     cartoon style ~(nucleic|strand) x round
    3171     cartoon style (nucleic|strand) x rect
    3172     cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    3173     cartoon style nucleic x round width 1.6 thick 1.6
    3174     nucleotides stubs
    3175 
    3176  
    3177 
    3178 > select /I
    3179 
    3180 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    3181 
    3182 > hide sel atoms
    3183 
    3184 > select /J
    3185 
    3186 2792 atoms, 3129 bonds, 137 residues, 1 model selected 
    3187 
    3188 > hide sel atoms
    3189 
    3190 > select clear
    3191 
    3192 > lighting soft intensity 0.3
    3193 
    3194 > lighting soft intensity 0.2
    3195 
    3196 > cartoon style protein width 0.5 thickness 0.5
    3197 
    3198 > cartoon style protein width 1 thickness 0.5
    3199 
    3200 > cartoon style protein width 1 thickness 0.7
    3201 
    3202 > cartoon style protein width 2 thickness 0.7
    3203 
    3204 > cartoon style protein width 1 thickness 0.7
    3205 
    3206 > cartoon style protein width 5 thickness 0.7
    3207 
    3208 > cartoon style protein width 1 thickness 0.7
    3209 
    3210 > cartoon style protein width 2 thickness 0.7
    3211 
    3212 > cartoon style protein width12 thick 0.7
    3213 
    3214 Expected a keyword 
    3215 
    3216 > cartoon style protein width 1 thickness 0.7
    3217 
    3218 > preset cartoons/nucleotides cylinders/stubs
    3219 
    3220 Changed 0 atom styles 
    3221 Preset expands to these ChimeraX commands:
    3222 
    3223    
    3224    
    3225     show nucleic
    3226     hide protein|solvent|H
    3227     surf hide
    3228     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    3229     cartoon
    3230     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    3231     cartoon style ~(nucleic|strand) x round
    3232     cartoon style (nucleic|strand) x rect
    3233     cartoon style protein modeh tube rad 2 sides 24 thick 0.6
    3234     cartoon style nucleic x round width 1.6 thick 1.6
    3235     nucleotides stubs
    3236 
    3237  
    3238 
    3239 > select /I
    3240 
    3241 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    3242 
    3243 > hide sel atoms
    3244 
    3245 > select /J
    3246 
    3247 2792 atoms, 3129 bonds, 137 residues, 1 model selected 
    3248 
    3249 > hide sel atoms
    3250 
    3251 > select clear
    3252 
    3253 > cartoon style protein width 1 thickness 0.7
    3254 
    3255 > cartoon style heliex width 2 thick 0.7
    3256 
    3257 Expected an atoms specifier or a keyword 
    3258 
    3259 > cartoon style helix width 2 thickness 0.7
    3260 
    3261 > cartoon style helix width 2.5 thickness 0.7
    3262 
    3263 > cartoon style helix width 2.5 thickness 1
    3264 
    3265 > cartoon style helix width 3 thickness 1
    3266 
    3267 > cartoon style helix width 5 thickness 1
    3268 
    3269 > cartoon style helix modeHelix tube radius 2.5
    3270 
    3271 > cartoon style helix modeHelix tube radius 2
    3272 
    3273 > cartoon style helix modeHelix tube radius 2.3
    3274 
    3275 > cartoon style helix modeHelix tube radius 2.2
    3276 
    3277 > graphics silhouettes true width 1.5
    3278 
    3279 > graphics silhouettes true width 2
    3280 
    3281 > graphics silhouettes true width 1.7
    3282 
    3283 > lighting soft intensity 0.4
    3284 
    3285 > lighting soft intensity 0.3
    3286 
    3287 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    3288 > view-2-change color-atom-cylinders.tif" width 2924 height 2000 supersample 4
    3289 > transparentBackground true
    3290 
    3291 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211004TZB/overall
    3292 > view-2-change color-atom-cylinders-2.tif" width 2924 height 2000 supersample
    3293 > 4 transparentBackground true
    3294 
    3295 > preset cartoons/nucleotides ribbons/slabs
    3296 
    3297 Changed 0 atom styles 
    3298 Preset expands to these ChimeraX commands:
    3299 
    3300    
    3301    
    3302     show nucleic
    3303     hide protein|solvent|H
    3304     surf hide
    3305     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    3306     cartoon
    3307     cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    3308     cartoon style ~(nucleic|strand) x round
    3309     cartoon style (nucleic|strand) x rect
    3310     nucleotides tube/slab shape box
    3311 
    3312  
    3313 
    3314 > select /J
    3315 
    3316 2792 atoms, 3129 bonds, 137 residues, 1 model selected 
    3317 
    3318 > hide sel atoms
    3319 
    3320 > select /I
    3321 
    3322 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    3323 
    3324 > hide sel atoms
    3325 
    3326 > select clear
    3327 
    3328 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    3329 > color/20211005-change color overall map.cxs" includeMaps true
    3330 
    3331 ——— End of log from Wed Oct 6 21:40:30 2021 ———
    3332 
    3333 opened ChimeraX session 
    3334 Drag select of 1122 residues 
    3335 
    3336 > hide #!2 models
    3337 
    3338 > show #!2 models
    3339 
    3340 > show #!1 models
    3341 
    3342 > hide #!1 models
    3343 
    3344 > show #!1 models
    3345 
    3346 > hide #!1 models
    3347 
    3348 > hide #2.1 models
    3349 
    3350 > select clear
    3351 
    3352 > show #!4 models
    3353 
    3354 > hide #!4 models
    3355 
    3356 > show #!1 models
    3357 
    3358 > hide #!1 models
    3359 
    3360 > show #!1 models
    3361 
    3362 > hide #2.7 models
    3363 
    3364 > show #2.7 models
    3365 
    3366 > select clear
    3367 
    3368 Drag select of 1.2 job059_postprocess.mrc 1 , 1.3 job059_postprocess.mrc 2 ,
    3369 1.4 job059_postprocess.mrc 3 , 1.5 job059_postprocess.mrc 4 , 1.6
    3370 job059_postprocess.mrc 5 , 1.7 job059_postprocess.mrc 6 , 1.8
    3371 job059_postprocess.mrc 7 , 1122 residues 
    3372 Drag select of 1.2 job059_postprocess.mrc 1 , 1.3 job059_postprocess.mrc 2 ,
    3373 1.4 job059_postprocess.mrc 3 , 1.5 job059_postprocess.mrc 4 , 1.6
    3374 job059_postprocess.mrc 5 , 1.7 job059_postprocess.mrc 6 , 1.8
    3375 job059_postprocess.mrc 7 , 1122 residues 
    3376 
    3377 > select
    3378 
    3379 12363 atoms, 13136 bonds, 1122 residues, 20 models selected 
    3380 
    3381 > coulombic sel
    3382 
    3383 Coulombic values for 20210929_final_for chimeraX_.pdb_A SES surface #2.1:
    3384 minimum, -13.42, mean 1.84, maximum 12.71 
    3385 Coulombic values for 20210929_final_for chimeraX_.pdb_B SES surface #2.2:
    3386 minimum, -8.84, mean 3.94, maximum 24.66 
    3387 Coulombic values for 20210929_final_for chimeraX_.pdb_C SES surface #2.3:
    3388 minimum, -14.45, mean 2.28, maximum 16.17 
    3389 Coulombic values for 20210929_final_for chimeraX_.pdb_D SES surface #2.4:
    3390 minimum, -12.45, mean 1.25, maximum 11.99 
    3391 Coulombic values for 20210929_final_for chimeraX_.pdb_E SES surface #2.5:
    3392 minimum, -11.62, mean 1.63, maximum 12.32 
    3393 Coulombic values for 20210929_final_for chimeraX_.pdb_F SES surface #2.6:
    3394 minimum, -8.12, mean 3.47, maximum 17.60 
    3395 Coulombic values for 20210929_final_for chimeraX_.pdb_G SES surface #2.7:
    3396 minimum, -16.37, mean 2.12, maximum 15.08 
    3397 Coulombic values for 20210929_final_for chimeraX_.pdb_H SES surface #2.8:
    3398 minimum, -12.68, mean 1.25, maximum 11.97 
    3399 Coulombic values for 20210929_final_for chimeraX_.pdb_I SES surface #2.9:
    3400 minimum, -23.98, mean -14.26, maximum -3.09 
    3401 Coulombic values for 20210929_final_for chimeraX_.pdb_J SES surface #2.10:
    3402 minimum, -25.82, mean -14.24, maximum -2.88 
    3403 Coulombic values for 20210929_final_for chimeraX_.pdb_S SES surface #2.11:
    3404 minimum, -11.34, mean -0.79, maximum 9.56 
    3405 Coulombic values for 20210929_final_for chimeraX_.pdb_U SES surface #2.12:
    3406 minimum, -12.75, mean -0.30, maximum 18.17 
    3407 To also show corresponding color key, enter the above coulombic command and
    3408 add key true 
    3409 
    3410 > hide #!1 models
    3411 
    3412 > select /S
    3413 
    3414 205 atoms, 210 bonds, 23 residues, 1 model selected 
    3415 
    3416 > hide sel atoms
    3417 
    3418 > hide sel surfaces
    3419 
    3420 > select /U
    3421 
    3422 593 atoms, 599 bonds, 74 residues, 1 model selected 
    3423 
    3424 > hide sel surfaces
    3425 
    3426 > select /I
    3427 
    3428 2819 atoms, 3165 bonds, 137 residues, 1 model selected 
    3429 
    3430 > hide sel surfaces
    3431 
    3432 > select /J
    3433 
    3434 2792 atoms, 3129 bonds, 137 residues, 1 model selected 
    3435 
    3436 > hide sel surfaces
    3437 
    3438 > select clear
    3439 
    3440 > lighting flat
    3441 
    3442 > select /S:167
    3443 
    3444 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3445 
    3446 > show sel atoms
    3447 
    3448 > color sel byhetero
    3449 
    3450 > select /S:164
    3451 
    3452 14 atoms, 15 bonds, 1 residue, 1 model selected 
    3453 
    3454 > show sel atoms
    3455 
    3456 > color sel byhetero
    3457 
    3458 > select /S:169
    3459 
    3460 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3461 
    3462 > style sel stick
    3463 
    3464 Changed 11 atom styles 
    3465 
    3466 > show sel atoms
    3467 
    3468 > color sel byhetero
    3469 
    3470 > select /S:168
    3471 
    3472 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3473 
    3474 > show sel atoms
    3475 
    3476 > style sel stick
    3477 
    3478 Changed 8 atom styles 
    3479 
    3480 > color sel byhetero
    3481 
    3482 > select /C:65@CD1
    3483 
    3484 1 atom, 1 residue, 1 model selected 
    3485 
    3486 > select clear
    3487 
    3488 > cartoon style protein width 1 thickness 1
    3489 
    3490 > cartoon style helix modeHelix tube radius 2
    3491 
    3492 > cartoon style helix modeHelix tube radius 5
    3493 
    3494 > cartoon style protein width 2 thickness 0.5
    3495 
    3496 > cartoon style protein width 2 thickness 1
    3497 
    3498 > cartoon style protein width 2 thickness 0.6
    3499 
    3500 > graphics silhouettes true width 1.5
    3501 
    3502 > graphics silhouettes true width 3
    3503 
    3504 > graphics silhouettes true width 2
    3505 
    3506 > graphics silhouettes true width 2.5
    3507 
    3508 > graphics silhouettes true width 2.2
    3509 
    3510 > lighting soft intensity 0.4
    3511 
    3512 > lighting flat intensity 0.4
    3513 
    3514 > lighting flat intensity 0.2
    3515 
    3516 > lighting flat intensity 0.1
    3517 
    3518 > ui tool show "Side View"
    3519 
    3520 > view
    3521 
    3522 > graphics silhouettes true width 1.5
    3523 
    3524 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    3525 > color/electric acidic patch .tif" width 2924 height 2000 supersample 4
    3526 > transparentBackground true
    3527 
    3528 > select
    3529 
    3530 12363 atoms, 13136 bonds, 1122 residues, 20 models selected 
    3531 
    3532 > hide sel surfaces
    3533 
    3534 > select clear
    3535 
    3536 > lighting soft
    3537 
    3538 > undo
    3539 
    3540 > undo
    3541 
    3542 > undo
    3543 
    3544 > select clear
    3545 
    3546 > undo
    3547 
    3548 > undo
    3549 
    3550 > undo
    3551 
    3552 > undo
    3553 
    3554 > undo
    3555 
    3556 > undo
    3557 
    3558 > view
    3559 
    3560 > view
    3561 
    3562 > select /S:169
    3563 
    3564 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3565 
    3566 > hide sel atoms
    3567 
    3568 > select /S:168
    3569 
    3570 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3571 
    3572 > hide sel atoms
    3573 
    3574 > select clear
    3575 
    3576 > lighting soft intensity 0.4
    3577 
    3578 > lighting soft intensity 0.3
    3579 
    3580 > select /D:47
    3581 
    3582 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3583 
    3584 > show sel atoms
    3585 
    3586 > select /D:113
    3587 
    3588 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3589 
    3590 > show sel atoms
    3591 
    3592 > select /C:56
    3593 
    3594 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3595 
    3596 > show sel atoms
    3597 
    3598 > color sel byhetero
    3599 
    3600 > select clear
    3601 
    3602 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    3603 > color/20211005-W164 R167-H2B H2A.cxs" includeMaps true
    3604 
    3605 ——— End of log from Thu Oct 7 16:18:40 2021 ———
    3606 
    3607 opened ChimeraX session 
    3608 
    3609 > select /S:164
    3610 
    3611 14 atoms, 15 bonds, 1 residue, 1 model selected 
    3612 
    3613 > hide sel atoms
    3614 
    3615 > select /S:167
    3616 
    3617 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3618 
    3619 > hide sel atoms
    3620 
    3621 > select /D:113
    3622 
    3623 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3624 
    3625 > hide sel atoms
    3626 
    3627 > select /C:56
    3628 
    3629 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3630 
    3631 > hide sel atoms
    3632 
    3633 > select /D:47
    3634 
    3635 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3636 
    3637 > hide sel atoms
    3638 
    3639 > select clear
    3640 
    3641 > select /I:-27
    3642 
    3643 19 atoms, 20 bonds, 1 residue, 1 model selected 
    3644 
    3645 > select /S:169
    3646 
    3647 11 atoms, 10 bonds, 1 residue, 1 model selected 
    3648 
    3649 > show sel atoms
    3650 
    3651 > select /S:168
    3652 
    3653 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3654 
    3655 > show sel atoms
    3656 
    3657 > select clear
    3658 
    3659 > select /B:90
    3660 
    3661 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3662 
    3663 > select /C:93
    3664 
    3665 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3666 
    3667 > show sel atoms
    3668 
    3669 > color sel byhetero
    3670 
    3671 > hide sel atoms
    3672 
    3673 > select /C:92
    3674 
    3675 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3676 
    3677 > show sel atoms
    3678 
    3679 > color sel byhetero
    3680 
    3681 > select /C:90
    3682 
    3683 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3684 
    3685 > show sel atoms
    3686 
    3687 > style sel stick
    3688 
    3689 Changed 8 atom styles 
    3690 
    3691 > color sel byhetero
    3692 
    3693 > select clear
    3694 
    3695 > ui tool show "Side View"
    3696 
    3697 > select /C:61
    3698 
    3699 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3700 
    3701 > show sel atoms
    3702 
    3703 > color sel byhetero
    3704 
    3705 > select /C:65
    3706 
    3707 8 atoms, 7 bonds, 1 residue, 1 model selected 
    3708 
    3709 > show sel atoms
    3710 
    3711 > color sel byhetero
    3712 
    3713 > select /C:64
    3714 
    3715 9 atoms, 8 bonds, 1 residue, 1 model selected 
    3716 
    3717 > color sel byhetero
    3718 
    3719 > show sel atoms
    3720 
    3721 > color sel byhetero
    3722 
    3723 > select clear
    3724 
    3725 > lighting soft intensity 0.4
    3726 
    3727 > lighting soft direction 0,-1,-1
    3728 
    3729 > lighting soft direction -1,-1,-1
    3730 
    3731 > lighting soft direction -1,0,-1
    3732 
    3733 > lighting soft direction -1,0,0
    3734 
    3735 > lighting soft direction 1,0,0
    3736 
    3737 > lighting soft direction 0,0,0
    3738 
    3739 > lighting soft direction 0,0,0
    3740 
    3741 > lighting soft direction 0,0,1
    3742 
    3743 > lighting soft direction 1,0,1
    3744 
    3745 > lighting soft direction 1,1,1
    3746 
    3747 > lighting soft direction 1,1,1
    3748 
    3749 > lighting soft direction 0,0,1
    3750 
    3751 > lighting soft direction 0,2,3
    3752 
    3753 > lighting soft direction -1,0,0
    3754 
    3755 > lighting soft intensity 0.4
    3756 
    3757 > lighting soft diection 1,0,0
    3758 
    3759 Expected a keyword 
    3760 
    3761 > lighting soft direction 1,0,0
    3762 
    3763 > lighting soft direction 0,1,0
    3764 
    3765 > lighting soft direction 0,1,1
    3766 
    3767 > lighting soft direction 0,1,1
    3768 
    3769 > lighting soft direction 0,1,1
    3770 
    3771 > lighting soft direction 0,1,1
    3772 
    3773 > view
    3774 
    3775 > view orient
    3776 
    3777 > view orient
    3778 
    3779 > lighting soft direction 0,1,0
    3780 
    3781 > lighting soft intensity 1
    3782 
    3783 > view
    3784 
    3785 > cofr frontCenter
    3786 
    3787 > ui tool show ViewDockX
    3788 
    3789 No suitable models found for ViewDockX 
    3790 
    3791 > Lighting soft direction 0,0,1
    3792 
    3793 Unknown command: Lighting soft direction 0,0,1 
    3794 
    3795 > Lighting soft direction 0，0,1
    3796 
    3797 Unknown command: Lighting soft direction 0，0,1 
    3798 
    3799 > Lighting soft direction 0，0,1
    3800 
    3801 Unknown command: Lighting soft direction 0，0,1 
    3802 
    3803 > Lighting soft direction 0,0,1
    3804 
    3805 Unknown command: Lighting soft direction 0,0,1 
    3806 
    3807 > Lighting soft direction 0,0,1
    3808 
    3809 Unknown command: Lighting soft direction 0,0,1 
    3810 
    3811 > Lighting soft direction 0,0,1
    3812 
    3813 Unknown command: Lighting soft direction 0,0,1 
    3814 
    3815 > Lighting soft direction 0,0,1
    3816 
    3817 Unknown command: Lighting soft direction 0,0,1 
    3818 
    3819 > Lighting soft direction 0,0,1
    3820 
    3821 Unknown command: Lighting soft direction 0,0,1 
    3822 
    3823 > Lighting soft direction 0,0,1
    3824 
    3825 Unknown command: Lighting soft direction 0,0,1 
    3826 
    3827 > Lighting soft direction 0,0,1
    3828 
    3829 Unknown command: Lighting soft direction 0,0,1 
    3830 
    3831 > Lighting soft direction 0,0,1
    3832 
    3833 Unknown command: Lighting soft direction 0,0,1 
    3834 
    3835 > Lighting soft direction 0,0,1
    3836 
    3837 Unknown command: Lighting soft direction 0,0,1 
    3838 
    3839 > Lighting soft direction 0,0,1
    3840 
    3841 Unknown command: Lighting soft direction 0,0,1 
    3842 
    3843 > Lighting soft direction 0,0,1
    3844 
    3845 Unknown command: Lighting soft direction 0,0,1 
    3846 
    3847 > Lighting soft direction 0,0,0
    3848 
    3849 Unknown command: Lighting soft direction 0,0,0 
    3850 
    3851 > Lighting soft direction 0,0,0
    3852 
    3853 Unknown command: Lighting soft direction 0,0,0 
    3854 
    3855 > Lighting soft direction 0,0,0
    3856 
    3857 Unknown command: Lighting soft direction 0,0,0 
    3858 
    3859 > Lighting soft direction 0,0,0
    3860 
    3861 Unknown command: Lighting soft direction 0,0,0 
    3862 
    3863 > Lighting soft direction 0,0,0
    3864 
    3865 Unknown command: Lighting soft direction 0,0,0 
    3866 
    3867 > Lighting soft direction 0,0,0
    3868 
    3869 Unknown command: Lighting soft direction 0,0,0 
    3870 
    3871 > Lighting soft direction 0,0,0
    3872 
    3873 Unknown command: Lighting soft direction 0,0,0 
    3874 
    3875 > view orient
    3876 
    3877 > lighting soft
    3878 
    3879 > help help:user
    3880 
    3881 > Lighting soft direction 0,0,0
    3882 
    3883 Unknown command: Lighting soft direction 0,0,0 
    3884 
    3885 > Lighting shadows ture
    3886 
    3887 Unknown command: Lighting shadows ture 
    3888 
    3889 > Lighting soft shadows ture
    3890 
    3891 Unknown command: Lighting soft shadows ture 
    3892 
    3893 > Lighting soft shadows true
    3894 
    3895 Unknown command: Lighting soft shadows true 
    3896 
    3897 > Lighting soft shadows true
    3898 
    3899 Unknown command: Lighting soft shadows true 
    3900 
    3901 > Lighting shadows true
    3902 
    3903 Unknown command: Lighting shadows true 
    3904 
    3905 > Lighting shadows true
    3906 
    3907 Unknown command: Lighting shadows true 
    3908 
    3909 > Lighting shadows true
    3910 
    3911 Unknown command: Lighting shadows true 
    3912 
    3913 > Lighting shadows true
    3914 
    3915 Unknown command: Lighting shadows true 
    3916 
    3917 > Lighting shadows true
    3918 
    3919 Unknown command: Lighting shadows true 
    3920 
    3921 > Lighting soft direction 0,-1,-1
    3922 
    3923 Unknown command: Lighting soft direction 0,-1,-1 
    3924 
    3925 > Lighting soft direction 0,-1,-1
    3926 
    3927 Unknown command: Lighting soft direction 0,-1,-1 
    3928 
    3929 > Lighting direction 0,-1,-1
    3930 
    3931 Unknown command: Lighting direction 0,-1,-1 
    3932 
    3933 > Lighting direction 0,-1,-1
    3934 
    3935 Unknown command: Lighting direction 0,-1,-1 
    3936 
    3937 > Lighting direction 0,-1,-1
    3938 
    3939 Unknown command: Lighting direction 0,-1,-1 
    3940 
    3941 > Lighting direction 0,-1,-1
    3942 
    3943 Unknown command: Lighting direction 0,-1,-1 
    3944 
    3945 > Lighting direction 0,-1,-1
    3946 
    3947 Unknown command: Lighting direction 0,-1,-1 
    3948 
    3949 > Lighting direction 0,-1,-1
    3950 
    3951 Unknown command: Lighting direction 0,-1,-1 
    3952 
    3953 > Lighting direction 0,-1,-1
    3954 
    3955 Unknown command: Lighting direction 0,-1,-1 
    3956 
    3957 > Lighting direction 0,-1,-1
    3958 
    3959 Unknown command: Lighting direction 0,-1,-1 
    3960 
    3961 > Lighting direction 0,-1,-1
    3962 
    3963 Unknown command: Lighting direction 0,-1,-1 
    3964 
    3965 > Lighting direction 0,-1,-1
    3966 
    3967 Unknown command: Lighting direction 0,-1,-1 
    3968 
    3969 > Lighting direction 0,-1,-1
    3970 
    3971 Unknown command: Lighting direction 0,-1,-1 
    3972 
    3973 > Lighting direction 0,-1,-1
    3974 
    3975 Unknown command: Lighting direction 0,-1,-1 
    3976 
    3977 > Lighting direction 0,-1,-1
    3978 
    3979 Unknown command: Lighting direction 0,-1,-1 
    3980 
    3981 > Lighting direction 0,-1,-1
    3982 
    3983 Unknown command: Lighting direction 0,-1,-1 
    3984 
    3985 > Lighting direction 0,-1,-1
    3986 
    3987 Unknown command: Lighting direction 0,-1,-1 
    3988 
    3989 > Lighting direction 0,-1,-1
    3990 
    3991 Unknown command: Lighting direction 0,-1,-1 
    3992 
    3993 > Lighting direction 0,-1,-1
    3994 
    3995 Unknown command: Lighting direction 0,-1,-1 
    3996 
    3997 > Lighting direction 0,-1,-1
    3998 
    3999 Unknown command: Lighting direction 0,-1,-1 
    4000 
    4001 > Lighting soft direction 0,-1,-1
    4002 
    4003 Unknown command: Lighting soft direction 0,-1,-1 
    4004 
    4005 > Lighting soft direction 0,-1,-1
    4006 
    4007 Unknown command: Lighting soft direction 0,-1,-1 
    4008 
    4009 > Lighting soft direction 0,-1,-1
    4010 
    4011 Unknown command: Lighting soft direction 0,-1,-1 
    4012 
    4013 > Lighting soft direction 0,-1,-1
    4014 
    4015 Unknown command: Lighting soft direction 0,-1,-1 
    4016 
    4017 > Lighting soft direction 0,-1,-1
    4018 
    4019 Unknown command: Lighting soft direction 0,-1,-1 
    4020 
    4021 > Lighting soft direction 0,-1,-1
    4022 
    4023 Unknown command: Lighting soft direction 0,-1,-1 
    4024 
    4025 > lighting soft intensity 0.4
    4026 
    4027 > lighting soft shadows ture
    4028 
    4029 Invalid "shadows" argument: Expected true or false (or 1 or 0) 
    4030 
    4031 > lighting soft shadows true
    4032 
    4033 > lighting soft shadows false
    4034 
    4035 > lighting soft shadows true
    4036 
    4037 > lighting soft shadows true
    4038 
    4039 > lighting soft shadows true
    4040 
    4041 > lighting soft intensity 0.5
    4042 
    4043 > lighting soft shadows true
    4044 
    4045 > lighting soft intensity 0.4
    4046 
    4047 > lighting soft shadows false
    4048 
    4049 > lighting soft shadows 5
    4050 
    4051 Invalid "shadows" argument: Expected true or false (or 1 or 0) 
    4052 
    4053 > lighting soft shadows true
    4054 
    4055 > lighting soft intensity 0.4
    4056 
    4057 > lighting soft shadows true
    4058 
    4059 > graphics silhouettes true width 1
    4060 
    4061 > Lighting soft direction 0,-1,-1
    4062 
    4063 Unknown command: Lighting soft direction 0,-1,-1 
    4064 
    4065 > Lighting soft direction 0,-1,-1
    4066 
    4067 Unknown command: Lighting soft direction 0,-1,-1 
    4068 
    4069 > Lighting soft direction 0,-1,-1
    4070 
    4071 Unknown command: Lighting soft direction 0,-1,-1 
    4072 
    4073 > Lighting soft direction 0,-1,-1
    4074 
    4075 Unknown command: Lighting soft direction 0,-1,-1 
    4076 
    4077 > Lighting soft direction 0,-1,-1
    4078 
    4079 Unknown command: Lighting soft direction 0,-1,-1 
    4080 
    4081 > Lighting soft direction 0,-1,-1
    4082 
    4083 Unknown command: Lighting soft direction 0,-1,-1 
    4084 
    4085 > Lighting soft direction 0,-1,-1
    4086 
    4087 Unknown command: Lighting soft direction 0,-1,-1 
    4088 
    4089 > lighting soft intensity 0.5
    4090 
    4091 > lighting soft intensity 0.6
    4092 
    4093 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    4094 > color/20211005-L168 R169-H2B H2A-2.tif" width 2924 height 2000 supersample 4
    4095 > transparentBackground true
    4096 
    4097 > graphics silhouettes true width 2
    4098 
    4099 > graphics silhouettes true width 1
    4100 
    4101 > view
    4102 
    4103 > lighting soft direction 1,1,1
    4104 
    4105 > lighting soft direction 1,1,-1
    4106 
    4107 > lighting soft direction 1,-1,-1
    4108 
    4109 > lighting soft direction 1,-1,-1
    4110 
    4111 > lighting soft direction 1,-1,-1
    4112 
    4113 > lighting soft direction 1,-1,-1
    4114 
    4115 > lighting soft direction 1,-1,-1
    4116 
    4117 > lighting soft direction 1,-1,-1
    4118 
    4119 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    4120 > color/20211005-L168 R169-H2B H2A-3.tif" width 2924 height 2000 supersample 4
    4121 > transparentBackground true
    4122 
    4123 > lighting soft intensity 0.5
    4124 
    4125 > lighting soft intensity 0.4
    4126 
    4127 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    4128 > color/20211005-L168 R169-H2B H2A-4.tif" width 2924 height 2000 supersample 4
    4129 > transparentBackground true
    4130 
    4131 > lighting soft direction 0,1,1
    4132 
    4133 > lighting soft direction 0,1,-1
    4134 
    4135 > lighting soft direction 0,1,-1
    4136 
    4137 > lighting soft intensity 0.4
    4138 
    4139 > lighting soft direction 0,-1,-1
    4140 
    4141 > lighting soft intensity 0.4
    4142 
    4143 > lighting soft ambientIntensity 1.8
    4144 
    4145 > lighting soft ambientIntensity 1.5
    4146 
    4147 > lighting soft intensity 0.4
    4148 
    4149 > lighting soft direction 1,-1,-1
    4150 
    4151 > lighting soft direction 1,-1,1
    4152 
    4153 > lighting soft intensity 0.4
    4154 
    4155 > lighting soft intensity 0.6
    4156 
    4157 > graphics silhouettes true width 1
    4158 
    4159 > graphics silhouettes true width 2
    4160 
    4161 > graphics silhouettes true width 1
    4162 
    4163 > graphics silhouettes true width 0.5
    4164 
    4165 > graphics silhouettes true width 0.8
    4166 
    4167 > graphics silhouettes true width 01
    4168 
    4169 > graphics silhouettes true width 1
    4170 
    4171 > graphics silhouettes true width 0.5
    4172 
    4173 > graphics silhouettes true width 1
    4174 
    4175 > graphics silhouettes true width 1.2
    4176 
    4177 > graphics silhouettes true width 1.5
    4178 
    4179 > graphics silhouettes true width 1
    4180 
    4181 > lighting soft ambientIntensity 1.8
    4182 
    4183 > lighting soft ambientIntensity 1
    4184 
    4185 > lighting soft ambientIntensity 1.5
    4186 
    4187 > lighting soft ambientIntensity 110
    4188 
    4189 > lighting soft ambientIntensity 10
    4190 
    4191 > lighting soft ambientIntensity 4
    4192 
    4193 > lighting soft ambientIntensity 2
    4194 
    4195 > lighting soft ambientIntensity 1
    4196 
    4197 > lighting soft ambientIntensity 2
    4198 
    4199 > lighting soft ambientIntensity 1.5
    4200 
    4201 > lighting soft
    4202 
    4203 > lighting flat
    4204 
    4205 > lighting soft
    4206 
    4207 > lighting soft intensity 0.4
    4208 
    4209 > lighting soft intensity 0.6
    4210 
    4211 > lighting soft intensity 0.8
    4212 
    4213 > lighting soft direction 1,0,0
    4214 
    4215 > lighting soft direction 1,0,-1
    4216 
    4217 > lighting soft direction -1,-1,-1
    4218 
    4219 > view
    4220 
    4221 > select clear
    4222 
    4223 > view orient
    4224 
    4225 > lighting soft intensity 0.4
    4226 
    4227 > lighting soft diection 0,-1,-1
    4228 
    4229 Expected a keyword 
    4230 
    4231 > lighting soft diection 0,-1,-1
    4232 
    4233 Expected a keyword 
    4234 
    4235 > lighting soft diection -1,-1,-1
    4236 
    4237 Expected a keyword 
    4238 
    4239 > lighting soft diection -1,-1,-1
    4240 
    4241 Expected a keyword 
    4242 
    4243 > lighting soft diection -1,-1,-1
    4244 
    4245 Expected a keyword 
    4246 
    4247 > lighting soft diection -1,-1,-1
    4248 
    4249 Expected a keyword 
    4250 
    4251 > lighting soft direction 0,-1,-1
    4252 
    4253 > lighting soft intensity 0.8
    4254 
    4255 > lighting soft intensity 02
    4256 
    4257 > lighting soft intensity 0.4
    4258 
    4259 > lighting soft intensity 0.6
    4260 
    4261 > view
    4262 
    4263 > lighting soft direction 0,1,1
    4264 
    4265 > lighting soft intensity 0.4
    4266 
    4267 > lighting soft direction 0,-1,-1
    4268 
    4269 > lighting soft intensity 0.4
    4270 
    4271 > lighting soft direction 1,0,0
    4272 
    4273 > lighting soft direction 1,1,1
    4274 
    4275 > lighting soft direction 1,1,1
    4276 
    4277 > lighting soft direction 1,1,1
    4278 
    4279 > lighting soft intensity 0.4
    4280 
    4281 > lighting soft direction 0,-1,1
    4282 
    4283 > lighting soft intensity 0.4
    4284 
    4285 > lighting soft direction 1,-1,-1
    4286 
    4287 > lighting soft direction 1,-1,-1
    4288 
    4289 > lighting soft direction 1,-1,-1
    4290 
    4291 > lighting soft direction 1,-1,-1
    4292 
    4293 > lighting soft intensity 0.5
    4294 
    4295 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    4296 > color/20211005-L168 R169-H2B H2A-5.tif" width 2924 height 2000 supersample 4
    4297 
    4298 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    4299 > color/20211005-L168R169-H2B H2A.cxs" includeMaps true
    4300 
    4301 > show #!1 models
    4302 
    4303 > hide #!1 models
    4304 
    4305 > select /S:169
    4306 
    4307 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4308 
    4309 > hide sel atoms
    4310 
    4311 > select /C:61
    4312 
    4313 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4314 
    4315 > hide sel atoms
    4316 
    4317 > select /C:64
    4318 
    4319 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4320 
    4321 > hide sel atoms
    4322 
    4323 > select /C:90
    4324 
    4325 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4326 
    4327 > hide sel atoms
    4328 
    4329 > select /C:92
    4330 
    4331 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4332 
    4333 > hide sel atoms
    4334 
    4335 > select /C:65
    4336 
    4337 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4338 
    4339 > hide sel atoms
    4340 
    4341 > select /S:168
    4342 
    4343 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4344 
    4345 > hide sel atoms
    4346 
    4347 > select clear
    4348 
    4349 > view
    4350 
    4351 > show #!1 models
    4352 
    4353 > lighting flat
    4354 
    4355 > graphics silhouettes false
    4356 
    4357 > graphics silhouettes true
    4358 
    4359 > graphics silhouettes true width 1
    4360 
    4361 > graphics silhouettes true width 0.5
    4362 
    4363 > graphics silhouettes true width 2
    4364 
    4365 > graphics silhouettes true width 1
    4366 
    4367 > lighting flat
    4368 
    4369 > lighting flat
    4370 
    4371 > lighting soft intensity 0.2
    4372 
    4373 > lighting flat intensity 0.2
    4374 
    4375 > lighting flat intensity 0.4
    4376 
    4377 > lighting flat intensity 0.1
    4378 
    4379 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    4380 > color/20211005-falt overall view.cxs" includeMaps true
    4381 
    4382 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer
    4383 > color/20211005-falt overall view.tif" width 2924 height 2000 supersample 4
    4384 > transparentBackground true
    4385 
    4386 > lighting soft
    4387 
    4388 > hide #!1 models
    4389 
    4390 > select /S:175
    4391 
    4392 7 atoms, 6 bonds, 1 residue, 1 model selected 
    4393 
    4394 > show sel atoms
    4395 
    4396 > color sel byhetero
    4397 
    4398 > select /S:177
    4399 
    4400 12 atoms, 12 bonds, 1 residue, 1 model selected 
    4401 
    4402 > show sel atoms
    4403 
    4404 > color sel byhetero
    4405 
    4406 > select /S:178
    4407 
    4408 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4409 
    4410 > color sel byhetero
    4411 
    4412 > show sel atoms
    4413 
    4414 > select /S:179
    4415 
    4416 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4417 
    4418 > show sel atoms
    4419 
    4420 > color sel byhetero
    4421 
    4422 > select /E:56
    4423 
    4424 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4425 
    4426 > show sel atoms
    4427 
    4428 > style sel stick
    4429 
    4430 Changed 9 atom styles 
    4431 
    4432 > color sel byhetero
    4433 
    4434 > select /C:81
    4435 
    4436 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4437 
    4438 > show sel atoms
    4439 
    4440 > style sel stick
    4441 
    4442 Changed 11 atom styles 
    4443 
    4444 > color sel byhetero
    4445 
    4446 > select /C:85
    4447 
    4448 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4449 
    4450 > show sel atoms
    4451 
    4452 > style sel stick
    4453 
    4454 Changed 8 atom styles 
    4455 
    4456 > color sel byhetero
    4457 
    4458 > select /C:89
    4459 
    4460 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4461 
    4462 > show sel atoms
    4463 
    4464 > color sel byhetero
    4465 
    4466 > select /C:72
    4467 
    4468 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4469 
    4470 > show sel atoms
    4471 
    4472 > style sel stick
    4473 
    4474 Changed 8 atom styles 
    4475 
    4476 > color sel byhetero
    4477 
    4478 > select /C:69
    4479 
    4480 5 atoms, 4 bonds, 1 residue, 1 model selected 
    4481 
    4482 > show sel atoms
    4483 
    4484 > style sel sphere
    4485 
    4486 Changed 5 atom styles 
    4487 
    4488 > style sel stick
    4489 
    4490 Changed 5 atom styles 
    4491 
    4492 > color sel byhetero
    4493 
    4494 > select /C:65
    4495 
    4496 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4497 
    4498 > style sel stick
    4499 
    4500 Changed 8 atom styles 
    4501 
    4502 > show sel atoms
    4503 
    4504 > color sel byhetero
    4505 
    4506 > select clear
    4507 
    4508 > lighting flat intensity 0.4
    4509 
    4510 > lighting flat intensity 0.2
    4511 
    4512 > lighting flat intensity 0.1
    4513 
    4514 > lighting soft intensity 0.1
    4515 
    4516 > lighting soft intensity 0.4
    4517 
    4518 > lighting soft intensity 0.5
    4519 
    4520 > lighting soft intensity 0.6
    4521 
    4522 > lighting soft intensity 0.4
    4523 
    4524 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/mid
    4525 > interact.tif" width 2924 height 2000 supersample 4
    4526 
    4527 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/mid
    4528 > interact-2.tif" width 2924 height 2000 supersample 4
    4529 
    4530 > graphics silhouettes true width 1.5
    4531 
    4532 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/mid
    4533 > interact-3.tif" width 2924 height 2000 supersample 4
    4534 
    4535 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/mid
    4536 > interact.cxs" includeMaps true
    4537 
    4538 > select /S:179
    4539 
    4540 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4541 
    4542 > hide sel atoms
    4543 
    4544 > select /S:178
    4545 
    4546 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4547 
    4548 > hide sel atoms
    4549 
    4550 > select /S:177
    4551 
    4552 12 atoms, 12 bonds, 1 residue, 1 model selected 
    4553 
    4554 > hide sel atoms
    4555 
    4556 > select /S:175
    4557 
    4558 7 atoms, 6 bonds, 1 residue, 1 model selected 
    4559 
    4560 > hide sel atoms
    4561 
    4562 > select /C:89
    4563 
    4564 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4565 
    4566 > hide sel atoms
    4567 
    4568 > select /C:72
    4569 
    4570 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4571 
    4572 > hide sel atoms
    4573 
    4574 > select /C:85
    4575 
    4576 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4577 
    4578 > hide sel atoms
    4579 
    4580 > select /C:65
    4581 
    4582 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4583 
    4584 > hide sel atoms
    4585 
    4586 > select /C:81
    4587 
    4588 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4589 
    4590 > hide sel atoms
    4591 
    4592 > view
    4593 
    4594 > graphics silhouettes true width 1
    4595 
    4596 > select /S:183
    4597 
    4598 7 atoms, 7 bonds, 1 residue, 1 model selected 
    4599 
    4600 > view sel
    4601 
    4602 > show sel atoms
    4603 
    4604 > undo
    4605 
    4606 > select /S:184
    4607 
    4608 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4609 
    4610 > show sel atoms
    4611 
    4612 > color sel byhetero
    4613 
    4614 > select /S:182
    4615 
    4616 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4617 
    4618 > show sel atoms
    4619 
    4620 > color sel byhetero
    4621 
    4622 > select clear
    4623 
    4624 > select /U:48
    4625 
    4626 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4627 
    4628 > show sel atoms
    4629 
    4630 > select /U:72
    4631 
    4632 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4633 
    4634 > show sel atoms
    4635 
    4636 > select /U:70
    4637 
    4638 7 atoms, 6 bonds, 1 residue, 1 model selected 
    4639 
    4640 > show sel atoms
    4641 
    4642 > select clear
    4643 
    4644 > select /U:44
    4645 
    4646 8 atoms, 7 bonds, 1 residue, 1 model selected 
    4647 
    4648 > show sel atoms
    4649 
    4650 > select clear
    4651 
    4652 > select /U:49
    4653 
    4654 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4655 
    4656 > show sel atoms
    4657 
    4658 > select clear
    4659 
    4660 > lighting soft intensity 0.4
    4661 
    4662 > lighting soft intensity 0.2
    4663 
    4664 > lighting soft direction 1,-1,-1
    4665 
    4666 > select /U:48
    4667 
    4668 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4669 
    4670 > hide sel atoms
    4671 
    4672 > select clear
    4673 
    4674 > lighting soft intensity 0.4
    4675 
    4676 > lighting soft direction 0,-1,-1
    4677 
    4678 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/last
    4679 > interact.cxs" includeMaps true
    4680 
    4681 ——— End of log from Thu Oct 7 21:55:38 2021 ———
    4682 
    4683 opened ChimeraX session 
    4684 
    4685 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/last
    4686 > interact-8.tif" width 2924 height 2000 supersample 4
    4687 
    4688 > select /E:56
    4689 
    4690 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4691 
    4692 > hide sel atoms
    4693 
    4694 > select clear
    4695 
    4696 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/last
    4697 > interact-9.tif" width 2924 height 2000 supersample 4
    4698 
    4699 > select /U:42
    4700 
    4701 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4702 
    4703 > show sel atoms
    4704 
    4705 > select clear
    4706 
    4707 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/last
    4708 > interact-10.tif" width 2924 height 2000 supersample 4
    4709 
    4710 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/last
    4711 > interact-2-CHANGED.cxs" includeMaps true
    4712 
    4713 ——— End of log from Thu Oct 7 22:28:25 2021 ———
    4714 
    4715 opened ChimeraX session 
    4716 
    4717 > select /E:53
    4718 
    4719 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4720 
    4721 > show sel atoms
    4722 
    4723 > hide sel atoms
    4724 
    4725 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/last
    4726 > interact-11.tif" width 2924 height 2000 supersample 4
    4727 
    4728 > save "D:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color/last
    4729 > interact-3.cxs" includeMaps true
    4730 
    4731 ——— End of log from Fri Oct 8 11:31:20 2021 ———
    4732 
    4733 opened ChimeraX session 
    4734 
    4735 > view
    4736 
    4737 > hide #!2 models
    4738 
    4739 > show #!1 models
    4740 
    4741 > hide #!1.1 models
    4742 
    4743 > hide #!1.2 models
    4744 
    4745 > show #!1.2 models
    4746 
    4747 > hide #!1.3 models
    4748 
    4749 > hide #!1.4 models
    4750 
    4751 > hide #!1.5 models
    4752 
    4753 > hide #!1.6 models
    4754 
    4755 > lighting soft ambientIntensity 1.3
    4756 
    4757 > lighting soft ambientIntensity 1.5
    4758 
    4759 No map chosen to save 
    4760 No map chosen to save 
    4761 
    4762 > ui tool show "Side View"
    4763 
    4764 > hide #!1.8 models
    4765 
    4766 > show #!1.8 models
    4767 
    4768 > select #2.8
    4769 
    4770 707 atoms, 91 residues, 1 model selected 
    4771 
    4772 > ~select #2.8
    4773 
    4774 1 model selected 
    4775 
    4776 > show #!2 models
    4777 
    4778 > hide #2.2 models
    4779 
    4780 > hide #2.1 models
    4781 
    4782 > hide #2.3 models
    4783 
    4784 > hide #2.4 models
    4785 
    4786 > hide #2.9 models
    4787 
    4788 > hide #2.10 models
    4789 
    4790 > hide #2.8 models
    4791 
    4792 > hide #2.11 models
    4793 
    4794 > hide #2.12 models
    4795 
    4796 > hide #2.7 models
    4797 
    4798 > hide #2.6 models
    4799 
    4800 > hide #2.5 models
    4801 
    4802 > hide #!2 models
    4803 
    4804 > show #!2 models
    4805 
    4806 > hide #!2 models
    4807 
    4808 > show #!2 models
    4809 
    4810 > hide #!2 models
    4811 
    4812 > show #!2 models
    4813 
    4814 > show #2.2 models
    4815 
    4816 > show #2.1 models
    4817 
    4818 > select #2.1
    4819 
    4820 801 atoms, 97 residues, 1 model selected 
    4821 
    4822 > select #2.3
    4823 
    4824 825 atoms, 107 residues, 1 model selected 
    4825 
    4826 > ~select #2.3
    4827 
    4828 1 model selected 
    4829 
    4830 > select #2.3
    4831 
    4832 825 atoms, 107 residues, 1 model selected 
    4833 
    4834 > show #2.3 models
    4835 
    4836 > show #2.4 models
    4837 
    4838 > show #2.5 models
    4839 
    4840 > show #2.9 models
    4841 
    4842 > show #2.8 models
    4843 
    4844 > show #2.7 models
    4845 
    4846 > show #2.6 models
    4847 
    4848 > show #2.10 models
    4849 
    4850 > show #2.11 models
    4851 
    4852 > show #2.12 models
    4853 
    4854 > select clear
    4855 
    4856 > hide #!2 models
    4857 
    4858 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    4859 > 结构作图/6-H3和Ub形成碱性沟槽/H3-UB-SSX1 map.tif" width 1343 height 874 supersample 4
    4860 > transparentBackground true
    4861 
    4862 > show #!2 models
    4863 
    4864 > lighting soft ambientIntensity 1.8
    4865 
    4866 > select #1.2
    4867 
    4868 4 models selected 
    4869 
    4870 > transparency #1.2.1 50
    4871 
    4872 > transparency #1.2.1 40
    4873 
    4874 > select #1.7
    4875 
    4876 3 models selected 
    4877 
    4878 > transparency #1.7.1 40
    4879 
    4880 > select #1.8
    4881 
    4882 3 models selected 
    4883 
    4884 > transparency #1.8.1 40
    4885 
    4886 > select clear
    4887 
    4888 > select /U:49
    4889 
    4890 9 atoms, 8 bonds, 1 residue, 1 model selected 
    4891 
    4892 > hide sel atoms
    4893 
    4894 > select /E:52
    4895 
    4896 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4897 
    4898 > show sel atoms
    4899 
    4900 > style sel stick
    4901 
    4902 Changed 11 atom styles 
    4903 
    4904 > style sel stick
    4905 
    4906 Changed 11 atom styles 
    4907 
    4908 > color sel byhetero
    4909 
    4910 > select /E:49
    4911 
    4912 11 atoms, 10 bonds, 1 residue, 1 model selected 
    4913 
    4914 > show sel atoms
    4915 
    4916 > style sel stick
    4917 
    4918 Changed 11 atom styles 
    4919 
    4920 > color sel byhetero
    4921 
    4922 > select clear
    4923 
    4924 > volume #1.2 level 0.01539
    4925 
    4926 > volume #1.7 level 0.01366
    4927 
    4928 > volume #1.7 level 0.01088
    4929 
    4930 > volume #1.8 level 0.01237
    4931 
    4932 > show #!1.6 models
    4933 
    4934 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    4935 > 结构作图/6-H3和Ub形成碱性沟槽/H3-Ub形成碱性沟槽.cxs" includeMaps true
    4936 
    4937 > hide #!1.6 models
    4938 
    4939 > lighting soft ambientIntensity 1.5
    4940 
    4941 > lighting soft ambientIntensity 1.6
    4942 
    4943 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    4944 > 结构作图/6-H3和Ub形成碱性沟槽/H3-UB-SSX1 完整map.tif" width 1343 height 874 supersample 4
    4945 > transparentBackground true
    4946 
    4947 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    4948 > 结构作图/6-H3和Ub形成碱性沟槽/H3-UB-SSX1 完整map.tif" width 2000 height 1302 supersample
    4949 > 3
    4950 
    4951 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    4952 > 结构作图/6-H3和Ub形成碱性沟槽/H3-UB-SSX1 完整map.tif" width 3000 height 1952 supersample
    4953 > 3
    4954 
    4955 > lighting flat
    4956 
    4957 > lighting full
    4958 
    4959 > lighting simple
    4960 
    4961 > lighting soft
    4962 
    4963 > graphics silhouettes false
    4964 
    4965 > lighting shadows true intensity 0.5
    4966 
    4967 > lighting flat
    4968 
    4969 > lighting full
    4970 
    4971 > lighting soft
    4972 
    4973 > lighting shadows true intensity 0.5
    4974 
    4975 > lighting shadows false
    4976 
    4977 > lighting shadows true
    4978 
    4979 > lighting shadows false
    4980 
    4981 > lighting shadows true
    4982 
    4983 > lighting shadows false
    4984 
    4985 > hide #!1.8 models
    4986 
    4987 > show #!1.8 models
    4988 
    4989 > hide #!1 models
    4990 
    4991 > hide #!2 models
    4992 
    4993 > show #!2 models
    4994 
    4995 > color byhetero
    4996 
    4997 > show surfaces
    4998 
    4999 > hide #2.4 models
    5000 
    5001 > show #2.4 models
    5002 
    5003 > hide #2.4 models
    5004 
    5005 > hide #2.3 models
    5006 
    5007 > hide #2.12 models
    5008 
    5009 > show #2.12 models
    5010 
    5011 > hide #2.11 models
    5012 
    5013 > show #2.11 models
    5014 
    5015 > hide #2.11 models
    5016 
    5017 > show #2.11 models
    5018 
    5019 > hide #!2.10 models
    5020 
    5021 > show #!2.10 models
    5022 
    5023 > hide #!2.10 models
    5024 
    5025 > hide #!2.9 models
    5026 
    5027 > hide #2.5 models
    5028 
    5029 > show #2.5 models
    5030 
    5031 > hide #2.2 models
    5032 
    5033 > show #2.2 models
    5034 
    5035 > hide #2.2 models
    5036 
    5037 > hide #2.1 models
    5038 
    5039 > show #2.1 models
    5040 
    5041 > hide #2.1 models
    5042 
    5043 > hide #2.11 models
    5044 
    5045 > show #2.11 models
    5046 
    5047 > hide #2.12 models
    5048 
    5049 > show #2.12 models
    5050 
    5051 > hide #2.8 models
    5052 
    5053 > show #2.8 models
    5054 
    5055 > hide #2.8 models
    5056 
    5057 > hide #2.7 models
    5058 
    5059 > hide #2.6 models
    5060 
    5061 > lighting soft
    5062 
    5063 > lighting flat
    5064 
    5065 > hide #2.5 models
    5066 
    5067 > show #2.5 models
    5068 
    5069 > hide #2.12 models
    5070 
    5071 > show #2.12 models
    5072 
    5073 > hide #2.11 models
    5074 
    5075 > show #2.11 models
    5076 
    5077 > hide #2.11 models
    5078 
    5079 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5080 > 结构作图/6-H3和Ub形成碱性沟槽/H3-Ub形成碱性沟槽-电性图.cxs" includeMaps true
    5081 
    5082 > graphics silhouettes false
    5083 
    5084 > lighting simple
    5085 
    5086 > lighting soft
    5087 
    5088 > lighting flat
    5089 
    5090 > hide #!1.8 models
    5091 
    5092 > show #!1.8 models
    5093 
    5094 > hide #!1.8 models
    5095 
    5096 > show #!1.8 models
    5097 
    5098 > hide #!1.7 models
    5099 
    5100 > hide #!1.2 models
    5101 
    5102 > volume #1.8 style mesh
    5103 
    5104 > graphics silhouettes false
    5105 
    5106 > lighting shadows true intensity 0.5
    5107 
    5108 > lighting shadows false
    5109 
    5110 > lighting flat
    5111 
    5112 > graphics silhouettes false
    5113 
    5114 > lighting full
    5115 
    5116 > lighting soft
    5117 
    5118 > hide #!1.8 models
    5119 
    5120 > lighting soft
    5121 
    5122 > graphics silhouettes true
    5123 
    5124 > lighting soft ambientIntensity 1.6
    5125 
    5126 > lighting soft ambientIntensity 2
    5127 
    5128 > graphics silhouettes false
    5129 
    5130 > lighting soft ambientIntensity 1
    5131 
    5132 > lighting soft ambientIntensity 1.5
    5133 
    5134 > lighting simple
    5135 
    5136 > lighting flat
    5137 
    5138 > lighting full
    5139 
    5140 > lighting soft
    5141 
    5142 > lighting full
    5143 
    5144 > lighting soft ambientIntensity 2
    5145 
    5146 > lighting soft intensity 0.4
    5147 
    5148 > lighting soft intensity 0.6
    5149 
    5150 > lighting soft intensity 0.8
    5151 
    5152 > lighting soft
    5153 
    5154 > lighting soft intensity 1
    5155 
    5156 > lighting soft intensity 0.6
    5157 
    5158 > hide #!2.12 models
    5159 
    5160 > show #!2.12 models
    5161 
    5162 > hide #!2.5 models
    5163 
    5164 > show #!2.5 models
    5165 
    5166 > hide #!2.12 models
    5167 
    5168 > show #!2.12 models
    5169 
    5170 > hide #!2.5 models
    5171 
    5172 > show #!2.5 models
    5173 
    5174 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5175 > 结构作图/6-H3和Ub形成碱性沟槽/H3-Ub形成碱性沟槽-电性图.cxs" includeMaps true
    5176 
    5177 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5178 > 结构作图/6-H3和Ub形成碱性沟槽/H3-UB碱性沟槽电性图.tif" width 3000 height 1952 supersample 4
    5179 > transparentBackground true
    5180 
    5181 > lighting flat
    5182 
    5183 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5184 > 结构作图/6-H3和Ub形成碱性沟槽/H3-UB碱性沟槽电性图-2-flat模式.tif" width 3000 height 1952
    5185 > supersample 4 transparentBackground true
    5186 
    5187 > lighting shadows true intensity 0.5
    5188 
    5189 > lighting shadows false
    5190 
    5191 > lighting shadows true
    5192 
    5193 > lighting shadows false
    5194 
    5195 > hide #!2 models
    5196 
    5197 > show #!2 models
    5198 
    5199 > hide #!2 models
    5200 
    5201 > show #!2 models
    5202 
    5203 > hide atoms
    5204 
    5205 > show cartoons
    5206 
    5207 > hide cartoons
    5208 
    5209 > hide surfaces
    5210 
    5211 > show cartoons
    5212 
    5213 > show #!1.8 models
    5214 
    5215 > hide #!1.8 models
    5216 
    5217 > select /E:49
    5218 
    5219 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5220 
    5221 > show sel atoms
    5222 
    5223 > select /E:53
    5224 
    5225 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5226 
    5227 > style sel stick
    5228 
    5229 Changed 11 atom styles 
    5230 
    5231 > show sel atoms
    5232 
    5233 > select /E:52
    5234 
    5235 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5236 
    5237 > show sel atoms
    5238 
    5239 > select /E:53
    5240 
    5241 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5242 
    5243 > hide sel cartoons
    5244 
    5245 > select /S:182
    5246 
    5247 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5248 
    5249 > show sel atoms
    5250 
    5251 > style sel stick
    5252 
    5253 Changed 8 atom styles 
    5254 
    5255 > select /S:184
    5256 
    5257 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5258 
    5259 > show sel atoms
    5260 
    5261 > style sel stick
    5262 
    5263 Changed 9 atom styles 
    5264 
    5265 > select /U:72
    5266 
    5267 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5268 
    5269 > show sel atoms
    5270 
    5271 > style sel stick
    5272 
    5273 Changed 11 atom styles 
    5274 
    5275 > select /U:42
    5276 
    5277 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5278 
    5279 > show sel atoms
    5280 
    5281 > select clear
    5282 
    5283 > select /E:51
    5284 
    5285 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5286 
    5287 > hide sel atoms
    5288 
    5289 > select /E:50
    5290 
    5291 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5292 
    5293 > hide sel cartoons
    5294 
    5295 > select /E:51
    5296 
    5297 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5298 
    5299 > hide sel cartoons
    5300 
    5301 > undo
    5302 
    5303 > undo
    5304 
    5305 > undo
    5306 
    5307 > select /E:49
    5308 
    5309 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5310 
    5311 > select clear
    5312 
    5313 > select clear
    5314 
    5315 Drag select of 10 atoms, 17 residues, 8 bonds 
    5316 
    5317 > show sel cartoons
    5318 
    5319 > select clear
    5320 
    5321 > select clear
    5322 
    5323 > select /E:49
    5324 
    5325 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5326 
    5327 > select clear
    5328 
    5329 > select /E:51
    5330 
    5331 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5332 Drag select of 19 atoms, 25 residues, 17 bonds 
    5333 
    5334 > show sel cartoons
    5335 
    5336 > show sel cartoons
    5337 
    5338 > select clear
    5339 
    5340 > select /E:53
    5341 
    5342 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5343 
    5344 > hide sel atoms
    5345 
    5346 > select clear
    5347 
    5348 > hide #!2.5 models
    5349 
    5350 > show #!2.5 models
    5351 
    5352 > hide #!2.5 models
    5353 
    5354 > show #!2.5 models
    5355 
    5356 > show #2.4 models
    5357 
    5358 > hide #2.4 models
    5359 
    5360 > hide #!2 models
    5361 
    5362 > show #!2 models
    5363 
    5364 > select /S:179
    5365 
    5366 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5367 
    5368 > show sel atoms
    5369 
    5370 > select /S:178
    5371 
    5372 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5373 
    5374 > show sel atoms
    5375 
    5376 > select /S:179
    5377 
    5378 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5379 
    5380 > hide sel atoms
    5381 
    5382 > select /S:178
    5383 
    5384 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5385 
    5386 > hide sel atoms
    5387 
    5388 > select clear
    5389 
    5390 > select /E:49
    5391 
    5392 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5393 
    5394 > select /E:51
    5395 
    5396 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5397 
    5398 > select /E
    5399 
    5400 783 atoms, 794 bonds, 95 residues, 1 model selected 
    5401 
    5402 > show sel cartoons
    5403 
    5404 > select clear
    5405 
    5406 > lighting soft
    5407 
    5408 > lighting soft intensity 1
    5409 
    5410 > lighting shadows true
    5411 
    5412 > lighting shadows false
    5413 
    5414 > select clear
    5415 
    5416 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5417 > 结构作图/6-H3和Ub形成碱性沟槽/原子模型.tif" width 3000 height 1952 supersample 4
    5418 
    5419 > show #!1.8 models
    5420 
    5421 > volume #1.8 level 0.009933
    5422 
    5423 > volume #1.8 level 0.01102
    5424 
    5425 > hide #!2.5 models
    5426 
    5427 > show #!2.5 models
    5428 
    5429 > hide #!1.8 models
    5430 
    5431 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5432 > 结构作图/6-H3和Ub形成碱性沟槽/原子模型-2.tif" width 3000 height 1952 supersample 4
    5433 > transparentBackground true
    5434 
    5435 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5436 > 结构作图/6-H3和Ub形成碱性沟槽/原子模型.cxs" includeMaps true
    5437 
    5438 > lighting soft intensity 0.8
    5439 
    5440 > lighting soft intensity 0.6
    5441 
    5442 > lighting soft intensity 0.5
    5443 
    5444 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5445 > 结构作图/6-H3和Ub形成碱性沟槽/原子模型-2.tif" width 3000 height 1952 supersample 4
    5446 > transparentBackground true
    5447 
    5448 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5449 > 结构作图/6-H3和Ub形成碱性沟槽/原子模型.tif" width 3000 height 1952 supersample 4
    5450 > transparentBackground true
    5451 
    5452 > show #!1.8 models
    5453 
    5454 > open E:/Documents/Map/SSX1/job054_run_ct17_class001.mrc
    5455 
    5456 Opened job054_run_ct17_class001.mrc as #3, grid size 256,256,256, pixel 1.07,
    5457 shown at level 0.003, step 1, values float32 
    5458 
    5459 > volume #3 level 0.007632
    5460 
    5461 > hide #!1.8 models
    5462 
    5463 > save "E:/Documents/Map/SSX1/SSX1 Model building/20211005-changer color-最终配色-
    5464 > 结构作图/6-H3和Ub形成碱性沟槽/post结构+refine结构.cxs" includeMaps true
    5465 
    5466 ——— End of log from Wed Feb 16 09:51:13 2022 ———
    5467 
    5468 opened ChimeraX session 
    5469 
    5470 > hide #!3 models
    5471 
    5472 > view
    5473 
    5474 > open "E:/Documents/Map/SSX1/SSX1 Model building/Wincoot PDB
    5475 > Save/20220216_TZB_reversed_D182P183E184.pdb"
    5476 
    5477 Summary of feedback from opening E:/Documents/Map/SSX1/SSX1 Model
    5478 building/Wincoot PDB Save/20220216_TZB_reversed_D182P183E184.pdb 
    5479 --- 
    5480 warnings | Ignored bad PDB record found on line 20 
    5481 DEVIATIONS FROM IDEAL VALUES. 
    5482  
    5483 Ignored bad PDB record found on line 21 
    5484 BOND : 0.009 0.093 13141 
    5485  
    5486 Ignored bad PDB record found on line 22 
    5487 ANGLE : 0.885 11.471 18915 
    5488  
    5489 Ignored bad PDB record found on line 23 
    5490 CHIRALITY : 0.050 0.241 2159 
    5491  
    5492 Ignored bad PDB record found on line 24 
    5493 PLANARITY : 0.006 0.054 1443 
    5494  
    5495 17 messages similar to the above omitted 
    5496 End residue of secondary structure not found: HELIX 32 32 THR H 90 LEU H 102
    5497 01 1 
    5498 Start residue of secondary structure not found: SHEET 9 9 9 GLY D 50 ILE D 51
    5499 0 
    5500 Start residue of secondary structure not found: SHEET 10 1010 THR D 85 ILE D
    5501 86 0 
    5502 Start residue of secondary structure not found: SHEET 19 1919 GLY H 50 ILE H
    5503 51 0 
    5504 Start residue of secondary structure not found: SHEET 20 2020 THR H 85 ILE H
    5505 86 0 
    5506  
    5507 Chain information for 20220216_TZB_reversed_D182P183E184.pdb #5 
    5508 --- 
    5509 Chain | Description 
    5510 A | No description available 
    5511 B | No description available 
    5512 C | No description available 
    5513 D H | No description available 
    5514 E | No description available 
    5515 F | No description available 
    5516 G | No description available 
    5517 I | No description available 
    5518 J | No description available 
    5519 S | No description available 
    5520 U | No description available 
    5521  
    5522 
    5523 > select #5
    5524 
    5525 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    5526 
    5527 > hide sel atoms
    5528 
    5529 > hide sel cartoons
    5530 
    5531 > hide sel surfaces
    5532 
    5533 > show sel cartoons
    5534 
    5535 > hide #!2 models
    5536 
    5537 > select clear
    5538 
    5539 > show #!2 models
    5540 
    5541 > hide #!2 models
    5542 
    5543 > show #!2 models
    5544 
    5545 > hide #5 models
    5546 
    5547 > show #5 models
    5548 
    5549 > show #2.1 models
    5550 
    5551 > hide #2.1 models
    5552 
    5553 > hide #2.5 models
    5554 
    5555 > hide #!2 models
    5556 
    5557 > show #2.1 models
    5558 
    5559 > hide #2.1 models
    5560 
    5561 > hide #!2 models
    5562 
    5563 > hide #5 models
    5564 
    5565 > show #2.1 models
    5566 
    5567 > show #2.2 models
    5568 
    5569 > show #2.3 models
    5570 
    5571 > show #2.4 models
    5572 
    5573 > show #2.5 models
    5574 
    5575 > show #2.6 models
    5576 
    5577 > show #2.7 models
    5578 
    5579 > show #2.8 models
    5580 
    5581 > show #!2.10 models
    5582 
    5583 > show #2.11 models
    5584 
    5585 > show #!2.9 models
    5586 
    5587 > hide #!2 models
    5588 
    5589 > hide #2.1 models
    5590 
    5591 > hide #2.2 models
    5592 
    5593 > hide #2.3 models
    5594 
    5595 > hide #2.4 models
    5596 
    5597 > hide #2.5 models
    5598 
    5599 > hide #2.6 models
    5600 
    5601 > hide #2.7 models
    5602 
    5603 > hide #2.8 models
    5604 
    5605 > hide #!2.9 models
    5606 
    5607 > hide #!2.10 models
    5608 
    5609 > hide #2.11 models
    5610 
    5611 > hide #2.12 models
    5612 
    5613 > show #5 models
    5614 
    5615 > show #!2 models
    5616 
    5617 > hide #!2 models
    5618 
    5619 > select #5/I
    5620 
    5621 2822 atoms, 3168 bonds, 137 residues, 1 model selected 
    5622 
    5623 > color sel dark gray
    5624 
    5625 > select #5/J
    5626 
    5627 2795 atoms, 3132 bonds, 137 residues, 1 model selected 
    5628 
    5629 > color sel dark gray
    5630 
    5631 > show #!2 models
    5632 
    5633 > hide #!2 models
    5634 
    5635 > select #5/U
    5636 
    5637 593 atoms, 599 bonds, 74 residues, 1 model selected 
    5638 
    5639 > ui tool show "Color Actions"
    5640 
    5641 > color sel yellow
    5642 
    5643 > select #5/S
    5644 
    5645 205 atoms, 210 bonds, 23 residues, 1 model selected 
    5646 
    5647 > color sel magenta
    5648 
    5649 > select #5/A
    5650 
    5651 801 atoms, 813 bonds, 97 residues, 1 model selected 
    5652 
    5653 > color sel dodger blue
    5654 
    5655 > select #5/E
    5656 
    5657 783 atoms, 794 bonds, 95 residues, 1 model selected 
    5658 
    5659 > color sel dodger blue
    5660 
    5661 > select #5/D
    5662 
    5663 707 atoms, 718 bonds, 91 residues, 1 model selected 
    5664 
    5665 > color sel light salmon
    5666 
    5667 > color sel salmon
    5668 
    5669 > lighting flat
    5670 
    5671 > show #!2 models
    5672 
    5673 > hide #!2 models
    5674 
    5675 > show #!2 models
    5676 
    5677 > hide #!2 models
    5678 
    5679 > show #!2 models
    5680 
    5681 > color sel wheat
    5682 
    5683 > hide #!2 models
    5684 
    5685 > color sel burly wood
    5686 
    5687 > show #!2 models
    5688 
    5689 > hide #!2 models
    5690 
    5691 > show #!2 models
    5692 
    5693 > hide #!2 models
    5694 
    5695 > select #5/B
    5696 
    5697 668 atoms, 675 bonds, 83 residues, 1 model selected 
    5698 
    5699 > show #!2 models
    5700 
    5701 > hide #!2 models
    5702 
    5703 > color sel light coral
    5704 
    5705 > select #5/C
    5706 
    5707 825 atoms, 835 bonds, 107 residues, 1 model selected 
    5708 
    5709 > color sel medium aquamarine
    5710 
    5711 > color sel medium sea green
    5712 
    5713 > show #!2 models
    5714 
    5715 > hide #!2 models
    5716 
    5717 > show #!2 models
    5718 
    5719 > hide #!2 models
    5720 
    5721 > select #5/D
    5722 
    5723 707 atoms, 718 bonds, 91 residues, 1 model selected 
    5724 
    5725 > select #5/F
    5726 
    5727 648 atoms, 655 bonds, 81 residues, 1 model selected 
    5728 
    5729 > show #!2 models
    5730 
    5731 > hide #!2 models
    5732 
    5733 > color sel salmon
    5734 
    5735 > select #5/G
    5736 
    5737 815 atoms, 825 bonds, 106 residues, 1 model selected 
    5738 
    5739 > show #!2 models
    5740 
    5741 > hide #!2 models
    5742 
    5743 > color sel medium sea green
    5744 
    5745 > color sel forest green
    5746 
    5747 > color sel lime green
    5748 
    5749 > color sel lime
    5750 
    5751 > color sel yellow green
    5752 
    5753 > color sel sea green
    5754 
    5755 > color sel medium aquamarine
    5756 
    5757 > color sel medium sea green
    5758 
    5759 > select #5/H
    5760 
    5761 707 atoms, 718 bonds, 91 residues, 1 model selected 
    5762 
    5763 > show #!2 models
    5764 
    5765 > hide #!2 models
    5766 
    5767 > color sel wheat
    5768 
    5769 > color sel burly wood
    5770 
    5771 > select clear
    5772 
    5773 > hide #5 models
    5774 
    5775 > show #5 models
    5776 
    5777 > show #!2 models
    5778 
    5779 > hide #!2 models
    5780 
    5781 > show #!2 models
    5782 
    5783 > hide #!2 models
    5784 
    5785 > show #!2 models
    5786 
    5787 > hide #!2 models
    5788 
    5789 > show #!2 models
    5790 
    5791 > hide #!2 models
    5792 
    5793 > show #!2 models
    5794 
    5795 > hide #!2 models
    5796 
    5797 > show #!2 models
    5798 
    5799 > hide #!2 models
    5800 
    5801 > show #!1.8 models
    5802 
    5803 > hide #!1.8 models
    5804 
    5805 > save "E:/Documents/Map/SSX1/SSX1 Model
    5806 > building/20220216-修改了D182-E184的密度/最终map+原子模型.cxs" includeMaps true
    5807 
    5808 > lighting soft
    5809 
    5810 > lighting shadows true intensity 0.5
    5811 
    5812 > lighting shadows false
    5813 
    5814 > lighting shadows true
    5815 
    5816 > lighting shadows false
    5817 
    5818 > view
    5819 
    5820 > view
    5821 
    5822 > show #!1.8 models
    5823 
    5824 > hide #!1.8 models
    5825 
    5826 > select #5/S:184
    5827 
    5828 9 atoms, 8 bonds, 1 residue, 1 model selected 
    5829 
    5830 > show sel atoms
    5831 
    5832 > style sel stick
    5833 
    5834 Changed 9 atom styles 
    5835 
    5836 > color sel byhetero
    5837 
    5838 > select #5/S:181
    5839 
    5840 6 atoms, 5 bonds, 1 residue, 1 model selected 
    5841 
    5842 > show sel cartoons
    5843 
    5844 > show sel atoms
    5845 
    5846 > style sel stick
    5847 
    5848 Changed 6 atom styles 
    5849 
    5850 > color sel byhetero
    5851 
    5852 > select #5/I:4
    5853 
    5854 22 atoms, 24 bonds, 1 residue, 1 model selected 
    5855 
    5856 > show sel atoms
    5857 
    5858 > style sel stick
    5859 
    5860 Changed 22 atom styles 
    5861 
    5862 > color sel byhetero
    5863 
    5864 > hide sel cartoons
    5865 
    5866 > show sel cartoons
    5867 
    5868 > hide sel atoms
    5869 
    5870 > select #5/S:181@CA
    5871 
    5872 1 atom, 1 residue, 1 model selected 
    5873 
    5874 > hide sel cartoons
    5875 
    5876 > show sel cartoons
    5877 
    5878 > hide sel atoms
    5879 
    5880 > hide sel atoms
    5881 
    5882 > hide sel atoms
    5883 
    5884 > show sel atoms
    5885 
    5886 > hide sel atoms
    5887 
    5888 > hide sel atoms
    5889 
    5890 > hide sel cartoons
    5891 
    5892 > hide sel cartoons
    5893 
    5894 > hide sel cartoons
    5895 
    5896 > hide sel cartoons
    5897 
    5898 > hide sel surfaces
    5899 
    5900 > hide sel cartoons
    5901 
    5902 > hide sel atoms
    5903 
    5904 > select clear
    5905 
    5906 > select #5/S:181
    5907 
    5908 6 atoms, 5 bonds, 1 residue, 1 model selected 
    5909 
    5910 > hide sel cartoons
    5911 
    5912 > hide sel atoms
    5913 
    5914 > hide sel cartoons
    5915 
    5916 > show sel cartoons
    5917 
    5918 > select clear
    5919 
    5920 > select #5/S:182
    5921 
    5922 8 atoms, 7 bonds, 1 residue, 1 model selected 
    5923 
    5924 > show sel atoms
    5925 
    5926 > style sel stick
    5927 
    5928 Changed 8 atom styles 
    5929 
    5930 > color sel byhetero
    5931 
    5932 > select #5/E:49
    5933 
    5934 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5935 
    5936 > show sel atoms
    5937 
    5938 > style sel stick
    5939 
    5940 Changed 11 atom styles 
    5941 
    5942 > color sel byhetero
    5943 
    5944 > select #5/E:52
    5945 
    5946 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5947 
    5948 > show sel atoms
    5949 
    5950 > style sel stick
    5951 
    5952 Changed 11 atom styles 
    5953 
    5954 > color sel byhetero
    5955 
    5956 > select clear
    5957 
    5958 > select #5/U:72
    5959 
    5960 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5961 
    5962 > show sel atoms
    5963 
    5964 > style sel stick
    5965 
    5966 Changed 11 atom styles 
    5967 
    5968 > color sel byhetero
    5969 
    5970 > select #5/U:42
    5971 
    5972 11 atoms, 10 bonds, 1 residue, 1 model selected 
    5973 
    5974 > show sel atoms
    5975 
    5976 > style sel stick
    5977 
    5978 Changed 11 atom styles 
    5979 
    5980 > color sel byhetero
    5981 
    5982 > select clear
    5983 
    5984 > show #!1.8 models
    5985 
    5986 > show #!1.7 models
    5987 
    5988 > show #!1.2 models
    5989 
    5990 > volume #1.7 style mesh
    5991 
    5992 > volume #1.2
    5993 
    5994 > volume #1.2 style mesh
    5995 
    5996 > volume #1.2 style surface
    5997 
    5998 > volume #1.7 style surface
    5999 
    6000 > select clear
    6001 
    6002 > hide #!1.2 models
    6003 
    6004 > hide #!1.7 models
    6005 
    6006 > show #!1.7 models
    6007 
    6008 > hide #!1.7 models
    6009 
    6010 > hide #!1.8 models
    6011 
    6012 > ui tool show "Side View"
    6013 
    6014 > save "E:/Documents/Map/SSX1/SSX1 Model
    6015 > building/20220216-修改了D182-E184的密度/原子模型.cxs" includeMaps true
    6016 
    6017 ——— End of log from Wed Feb 16 12:33:54 2022 ———
    6018 
    6019 opened ChimeraX session 
    6020 
    6021 > cartoon style protein thickness 0.6
    6022 
    6023 > select #5/U
    6024 
    6025 593 atoms, 599 bonds, 74 residues, 1 model selected 
    6026 
    6027 > ui tool show "Color Actions"
    6028 
    6029 > color sel gold
    6030 
    6031 > save "E:/Documents/Map/SSX1/SSX1 Model
    6032 > building/20220216-修改了D182-E184的密度/最终map+原子模型.cxs" includeMaps true
    6033 
    6034 > select clear
    6035 
    6036 > cartoon style protein thickness 0.5
    6037 
    6038 > select #5/U:72@NH1
    6039 
    6040 1 atom, 1 residue, 1 model selected 
    6041 
    6042 > style sel stick
    6043 
    6044 Changed 1 atom style 
    6045 
    6046 > color sel byhetero
    6047 
    6048 > select #5/U:42@CB
    6049 
    6050 1 atom, 1 residue, 1 model selected 
    6051 
    6052 > color sel byhetero
    6053 
    6054 > style sel stick
    6055 
    6056 Changed 1 atom style 
    6057 
    6058 > show sel atoms
    6059 
    6060 > select clear
    6061 
    6062 > select #5/U:42@CB
    6063 
    6064 1 atom, 1 residue, 1 model selected 
    6065 
    6066 > color sel byhetero
    6067 
    6068 > color sel byhetero
    6069 
    6070 > style sel stick
    6071 
    6072 Changed 1 atom style 
    6073 
    6074 > style sel stick
    6075 
    6076 Changed 1 atom style 
    6077 
    6078 > style sel stick
    6079 
    6080 Changed 1 atom style 
    6081 
    6082 > select #5/U:42
    6083 
    6084 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6085 
    6086 > color sel byhetero
    6087 
    6088 > select #5/U:72
    6089 
    6090 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6091 
    6092 > color sel byhetero
    6093 
    6094 > select clear
    6095 
    6096 > save "E:/Documents/Map/SSX1/SSX1 Model
    6097 > building/20220216-修改了D182-E184的密度/最终map+原子模型.cxs" includeMaps true
    6098 
    6099 ——— End of log from Wed Feb 16 19:42:15 2022 ———
    6100 
    6101 opened ChimeraX session 
    6102 
    6103 > view orient
    6104 
    6105 > select #5/U:44
    6106 
    6107 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6108 
    6109 > open 5KGF
    6110 
    6111 Summary of feedback from opening 5KGF fetched from pdb 
    6112 --- 
    6113 notes | Fetching compressed mmCIF 5kgf from
    6114 http://files.rcsb.org/download/5kgf.cif 
    6115 Fetching CCD M2L from http://ligand-expo.rcsb.org/reports/M/M2L/M2L.cif 
    6116  
    6117 5kgf title: 
    6118 Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome,
    6119 at 4.5 A resolution [more info...] 
    6120  
    6121 Chain information for 5kgf #6 
    6122 --- 
    6123 Chain | Description 
    6124 A E | Histone H3.2 
    6125 B F | Histone H4 
    6126 C G | Histone H2A type 1 
    6127 D H | Histone H2B type 1-C/E/F/G/I 
    6128 I | DNA (145-mer) 
    6129 J | DNA (145-mer) 
    6130 K L | Tumor suppressor p53-binding protein 1 
    6131 M O | Ubiquitin 
    6132  
    6133 
    6134 > select #6
    6135 
    6136 13782 atoms, 14595 bonds, 327 pseudobonds, 1276 residues, 2 models selected 
    6137 
    6138 > ~select #6
    6139 
    6140 Nothing selected 
    6141 
    6142 > select #6
    6143 
    6144 13782 atoms, 14595 bonds, 327 pseudobonds, 1276 residues, 2 models selected 
    6145 
    6146 > hide sel surfaces
    6147 
    6148 > hide sel cartoons
    6149 
    6150 > hide sel atoms
    6151 
    6152 > show sel cartoons
    6153 
    6154 > select clear
    6155 
    6156 > select #6
    6157 
    6158 13782 atoms, 14595 bonds, 327 pseudobonds, 1276 residues, 2 models selected 
    6159 
    6160 > select clear
    6161 
    6162 > ui tool show Matchmaker
    6163 
    6164 > matchmaker #6/O to #5/U pairing ss
    6165 
    6166 Parameters 
    6167 --- 
    6168 Chain pairing | ss 
    6169 Alignment algorithm | Needleman-Wunsch 
    6170 Similarity matrix | BLOSUM-62 
    6171 SS fraction | 0.3 
    6172 Gap open (HH/SS/other) | 18/18/6 
    6173 Gap extend | 1 
    6174 SS matrix |  |  | H | S | O 
    6175 ---|---|---|--- 
    6176 H | 6 | -9 | -6 
    6177 S |  | 6 | -6 
    6178 O |  |  | 4 
    6179 Iteration cutoff | 2 
    6180  
    6181 Matchmaker 20220216_TZB_reversed_D182P183E184.pdb, chain U (#5) with 5kgf,
    6182 chain O (#6), sequence alignment score = 312.3 
    6183 RMSD between 60 pruned atom pairs is 1.135 angstroms; (across all 74 pairs:
    6184 1.703) 
    6185  
    6186 
    6187 > hide #!1 models
    6188 
    6189 > hide #!6 models
    6190 
    6191 > show #!6 models
    6192 
    6193 > hide #5 models
    6194 
    6195 > select #6/O
    6196 
    6197 601 atoms, 607 bonds, 76 residues, 1 model selected 
    6198 
    6199 > color sel yellow
    6200 
    6201 > select clear
    6202 
    6203 > select #6/K
    6204 
    6205 166 atoms, 165 bonds, 21 residues, 1 model selected 
    6206 
    6207 > color sel red
    6208 
    6209 > select clear
    6210 
    6211 > show #!1.8 models
    6212 
    6213 > hide #!1.8 models
    6214 
    6215 > show #5 models
    6216 
    6217 > hide #!6 models
    6218 
    6219 > show #!6 models
    6220 
    6221 > hide #5 models
    6222 
    6223 > select #6/O:74
    6224 
    6225 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6226 
    6227 > show sel atoms
    6228 
    6229 > style sel stick
    6230 
    6231 Changed 11 atom styles 
    6232 
    6233 > color sel byhetero
    6234 
    6235 > select clear
    6236 
    6237 > select #6/O:72
    6238 
    6239 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6240 
    6241 > show sel atoms
    6242 
    6243 > style sel stick
    6244 
    6245 Changed 11 atom styles 
    6246 
    6247 > color sel byhetero
    6248 
    6249 > select clear
    6250 
    6251 > save "E:/Documents/Map/SSX1/SSX1 Model
    6252 > building/SSX1和其他reader结构比较/53BP1-SSX1.cxs" includeMaps true
    6253 
    6254 > hide #!6 models
    6255 
    6256 > show #5 models
    6257 
    6258 > select #5/U:69
    6259 
    6260 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6261 
    6262 > show sel atoms
    6263 
    6264 > style sel stick
    6265 
    6266 Changed 8 atom styles 
    6267 Drag select of 1 residues 
    6268 
    6269 > show sel atoms
    6270 
    6271 > style sel stick
    6272 
    6273 Changed 8 atom styles 
    6274 
    6275 > select clear
    6276 
    6277 > view orient
    6278 
    6279 > show #!6 models
    6280 
    6281 > hide #5 models
    6282 
    6283 > select #6/O:68
    6284 
    6285 10 atoms, 10 bonds, 1 residue, 1 model selected 
    6286 
    6287 > show sel atoms
    6288 
    6289 > style sel stick
    6290 
    6291 Changed 10 atom styles 
    6292 
    6293 > color sel byhetero
    6294 
    6295 > select #6/O:44
    6296 
    6297 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6298 
    6299 > show sel atoms
    6300 
    6301 > style sel stick
    6302 
    6303 Changed 8 atom styles 
    6304 
    6305 > color sel byhetero
    6306 
    6307 > select clear
    6308 
    6309 > select #6/O:8
    6310 
    6311 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6312 
    6313 > show sel atoms
    6314 
    6315 > style sel stick
    6316 
    6317 Changed 8 atom styles 
    6318 
    6319 > select clear
    6320 
    6321 > select #6/O:72
    6322 
    6323 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6324 
    6325 > hide sel atoms
    6326 
    6327 > select #6/O:74
    6328 
    6329 11 atoms, 10 bonds, 1 residue, 1 model selected 
    6330 
    6331 > hide sel atoms
    6332 
    6333 > select clear
    6334 
    6335 > select #6/H:105
    6336 
    6337 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6338 
    6339 > show sel atoms
    6340 
    6341 > style sel stick
    6342 
    6343 Changed 9 atom styles 
    6344 
    6345 > color sel byhetero
    6346 
    6347 > select #6/H:106
    6348 
    6349 10 atoms, 10 bonds, 1 residue, 1 model selected 
    6350 
    6351 > show sel atoms
    6352 
    6353 > style sel stick
    6354 
    6355 Changed 10 atom styles 
    6356 
    6357 > color sel byhetero
    6358 
    6359 > select clear
    6360 
    6361 > select #6/H:119
    6362 
    6363 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6364 
    6365 > show sel atoms
    6366 
    6367 > style sel stick
    6368 
    6369 Changed 7 atom styles 
    6370 
    6371 > color sel byhetero
    6372 
    6373 > select clear
    6374 
    6375 > open 7E8I
    6376 
    6377 Summary of feedback from opening 7E8I fetched from pdb 
    6378 --- 
    6379 note | Fetching compressed mmCIF 7e8i from
    6380 http://files.rcsb.org/download/7e8i.cif 
    6381  
    6382 7e8i title: 
    6383 Structural insight into BRCA1-BARD1 complex recruitment to damaged chromatin
    6384 [more info...] 
    6385  
    6386 Chain information for 7e8i #7 
    6387 --- 
    6388 Chain | Description 
    6389 A E | Histone H3 
    6390 B F | Histone H4 
    6391 C G | Histone H2A 
    6392 D H | Histone H2B 1.1 
    6393 I | DNA (145-mer) 
    6394 J | DNA (145-mer) 
    6395 K | BRCA1-associated RING domain protein 1 
    6396 L | Polyubiquitin-B 
    6397  
    6398 
    6399 > select #7
    6400 
    6401 15271 atoms, 16145 bonds, 354 pseudobonds, 1466 residues, 3 models selected 
    6402 
    6403 > hide sel surfaces
    6404 
    6405 > hide sel cartoons
    6406 
    6407 > hide sel atoms
    6408 
    6409 > show sel cartoons
    6410 
    6411 > select clear
    6412 
    6413 > ui tool show Matchmaker
    6414 
    6415 > matchmaker #7/L to #5/U pairing ss
    6416 
    6417 Parameters 
    6418 --- 
    6419 Chain pairing | ss 
    6420 Alignment algorithm | Needleman-Wunsch 
    6421 Similarity matrix | BLOSUM-62 
    6422 SS fraction | 0.3 
    6423 Gap open (HH/SS/other) | 18/18/6 
    6424 Gap extend | 1 
    6425 SS matrix |  |  | H | S | O 
    6426 ---|---|---|--- 
    6427 H | 6 | -9 | -6 
    6428 S |  | 6 | -6 
    6429 O |  |  | 4 
    6430 Iteration cutoff | 2 
    6431  
    6432 Matchmaker 20220216_TZB_reversed_D182P183E184.pdb, chain U (#5) with 7e8i,
    6433 chain L (#7), sequence alignment score = 333.3 
    6434 RMSD between 65 pruned atom pairs is 0.993 angstroms; (across all 74 pairs:
    6435 1.683) 
    6436  
    6437 
    6438 > hide #!6 models
    6439 
    6440 > show #!1.8 models
    6441 
    6442 > hide #!1.8 models
    6443 
    6444 > show #5 models
    6445 
    6446 > select #7/K
    6447 
    6448 2653 atoms, 2717 bonds, 1 pseudobond, 334 residues, 2 models selected 
    6449 
    6450 > select clear
    6451 
    6452 > select #7/L:63
    6453 
    6454 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6455 
    6456 > show sel atoms
    6457 
    6458 > style sel stick
    6459 
    6460 Changed 9 atom styles 
    6461 
    6462 > color sel byhetero
    6463 
    6464 > select clear
    6465 
    6466 > select clear
    6467 
    6468 > hide #!7 models
    6469 
    6470 > select #5/U:36
    6471 
    6472 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6473 
    6474 > show sel atoms
    6475 
    6476 > style sel stick
    6477 
    6478 Changed 8 atom styles 
    6479 
    6480 > select #5/J:-8
    6481 
    6482 19 atoms, 20 bonds, 1 residue, 1 model selected 
    6483 
    6484 > show #!7 models
    6485 
    6486 > select #7/L:64
    6487 
    6488 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6489 
    6490 > show sel atoms
    6491 
    6492 > style sel stick
    6493 
    6494 Changed 9 atom styles 
    6495 
    6496 > color sel byhetero
    6497 
    6498 > color sel red
    6499 
    6500 > select #7/L:63
    6501 
    6502 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6503 
    6504 > color sel red
    6505 
    6506 > select #7/L:62
    6507 
    6508 9 atoms, 8 bonds, 1 residue, 1 model selected 
    6509 
    6510 > show sel atoms
    6511 
    6512 > style sel stick
    6513 
    6514 Changed 9 atom styles 
    6515 
    6516 > color sel byhetero
    6517 
    6518 > color sel red
    6519 
    6520 > select clear
    6521 
    6522 > hide #!7 models
    6523 
    6524 > hide #5 models
    6525 
    6526 > show #5 models
    6527 
    6528 > select #5/U
    6529 
    6530 593 atoms, 599 bonds, 74 residues, 1 model selected 
    6531 
    6532 > show sel surfaces
    6533 
    6534 > color (#!5 & sel) yellow
    6535 
    6536 > select clear
    6537 
    6538 > select #5/U:44@CD1
    6539 
    6540 1 atom, 1 residue, 1 model selected 
    6541 
    6542 > color (#!5 & sel) blue
    6543 
    6544 > select clear
    6545 
    6546 > select #5/U:70@CG2
    6547 
    6548 1 atom, 1 residue, 1 model selected 
    6549 
    6550 > color (#!5 & sel) blue
    6551 
    6552 > select clear
    6553 
    6554 > select #5/U:70@CB
    6555 
    6556 1 atom, 1 residue, 1 model selected 
    6557 
    6558 > color (#!5 & sel) blue
    6559 
    6560 > select clear
    6561 
    6562 > show #!6 models
    6563 
    6564 > show #!7 models
    6565 
    6566 > hide #!6 models
    6567 
    6568 > hide #!7 models
    6569 
    6570 > open 6O96
    6571 
    6572 Summary of feedback from opening 6O96 fetched from pdb 
    6573 --- 
    6574 warnings | Unknown polymer entity '9' near line 17696 
    6575 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. 
    6576 notes | Fetching compressed mmCIF 6o96 from
    6577 http://files.rcsb.org/download/6o96.cif 
    6578 Fetching CCD SAH from http://ligand-expo.rcsb.org/reports/S/SAH/SAH.cif 
    6579  
    6580 6o96 title: 
    6581 Dot1L bound to the H2BK120 Ubiquitinated nucleosome [more info...] 
    6582  
    6583 Chain information for 6o96 #8 
    6584 --- 
    6585 Chain | Description 
    6586 A E | Histone H3.2 
    6587 B F | Histone H4 
    6588 C G | Histone H2A 
    6589 D H | Histone H2B 1.1 
    6590 I | DNA (146-mer) 
    6591 J | DNA (146-mer) 
    6592 K | Histone-lysine N-methyltransferase, H3 lysine-79 specific 
    6593 L | Polyubiquitin-B 
    6594  
    6595 
    6596 > select #8
    6597 
    6598 15194 atoms, 16075 bonds, 379 pseudobonds, 1454 residues, 3 models selected 
    6599 
    6600 > hide sel surfaces
    6601 
    6602 > hide sel cartoons
    6603 
    6604 > hide sel atoms
    6605 
    6606 > show sel atoms
    6607 
    6608 > hide sel atoms
    6609 
    6610 > show sel cartoons
    6611 
    6612 > ui tool show Matchmaker
    6613 
    6614 > ui mousemode right "translate selected models"
    6615 
    6616 > view matrix models #8,1,0,0,60.773,0,1,0,51.544,0,0,1,30.722
    6617 
    6618 > select clear
    6619 
    6620 > matchmaker #8/L to #5/U pairing ss
    6621 
    6622 Parameters 
    6623 --- 
    6624 Chain pairing | ss 
    6625 Alignment algorithm | Needleman-Wunsch 
    6626 Similarity matrix | BLOSUM-62 
    6627 SS fraction | 0.3 
    6628 Gap open (HH/SS/other) | 18/18/6 
    6629 Gap extend | 1 
    6630 SS matrix |  |  | H | S | O 
    6631 ---|---|---|--- 
    6632 H | 6 | -9 | -6 
    6633 S |  | 6 | -6 
    6634 O |  |  | 4 
    6635 Iteration cutoff | 2 
    6636  
    6637 Matchmaker 20220216_TZB_reversed_D182P183E184.pdb, chain U (#5) with 6o96,
    6638 chain L (#8), sequence alignment score = 318.3 
    6639 RMSD between 59 pruned atom pairs is 1.093 angstroms; (across all 74 pairs:
    6640 1.685) 
    6641  
    6642 
    6643 > hide #!5 models
    6644 
    6645 > show #!5 models
    6646 
    6647 > save "E:/Documents/Map/SSX1/SSX1 Model
    6648 > building/SSX1和其他reader结构比较/53BP1-Dot1-BARD1-SSX1.cxs" includeMaps true
    6649 
    6650 > hide #!8 models
    6651 
    6652 > open 6WKR
    6653 
    6654 Summary of feedback from opening 6WKR fetched from pdb 
    6655 --- 
    6656 warnings | Unknown polymer entity '14' near line 35601 
    6657 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. 
    6658 notes | Fetching compressed mmCIF 6wkr from
    6659 http://files.rcsb.org/download/6wkr.cif 
    6660 Fetching CCD MG from http://ligand-expo.rcsb.org/reports/M/MG/MG.cif 
    6661 Fetching CCD M3L from http://ligand-expo.rcsb.org/reports/M/M3L/M3L.cif 
    6662  
    6663 6wkr title: 
    6664 PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome [more info...] 
    6665  
    6666 Chain information for 6wkr #9 
    6667 --- 
    6668 Chain | Description 
    6669 A | Polycomb protein SUZ12 
    6670 B E | Protein Jumonji 
    6671 C | Histone-lysine N-methyltransferase EZH2 
    6672 F T | Ubiquitin 
    6673 H | DNA (314-mer) 
    6674 I O | Histone H3.2 
    6675 J Q | Histone H4 
    6676 K R | Histone H2A type 1 
    6677 L | Polycomb protein EED 
    6678 M S | Histone H2B 1.1 
    6679 N | Histone-binding protein RBBP4 
    6680 P | Zinc finger protein AEBP2 
    6681  
    6682 Non-standard residues in 6wkr #9 
    6683 --- 
    6684 MG — magnesium ion 
    6685 ZN — zinc ion 
    6686  
    6687 
    6688 > select #9
    6689 
    6690 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    6691 
    6692 > hide sel atoms
    6693 
    6694 > hide sel cartoons
    6695 
    6696 > hide sel surfaces
    6697 
    6698 > show sel cartoons
    6699 
    6700 > select clear
    6701 
    6702 > select clear
    6703 
    6704 > select #9/C
    6705 
    6706 4304 atoms, 4415 bonds, 2 pseudobonds, 607 residues, 2 models selected 
    6707 
    6708 > delete atoms (#!9 & sel)
    6709 
    6710 > delete bonds (#!9 & sel)
    6711 
    6712 > select #8/K
    6713 
    6714 2622 atoms, 2689 bonds, 1 pseudobond, 322 residues, 2 models selected 
    6715 
    6716 > select #9/L
    6717 
    6718 2874 atoms, 2949 bonds, 362 residues, 1 model selected 
    6719 
    6720 > delete atoms sel
    6721 
    6722 > delete bonds sel
    6723 
    6724 > select clear
    6725 
    6726 > select #9/A
    6727 
    6728 3341 atoms, 3419 bonds, 7 pseudobonds, 440 residues, 2 models selected 
    6729 
    6730 > delete atoms (#!9 & sel)
    6731 
    6732 > delete bonds (#!9 & sel)
    6733 
    6734 > select #9/N
    6735 
    6736 3080 atoms, 3165 bonds, 1 pseudobond, 395 residues, 2 models selected 
    6737 
    6738 > delete atoms (#!9 & sel)
    6739 
    6740 > delete bonds (#!9 & sel)
    6741 
    6742 > select #8/K
    6743 
    6744 2622 atoms, 2689 bonds, 1 pseudobond, 322 residues, 2 models selected 
    6745 
    6746 > select clear
    6747 
    6748 Drag select of 167 residues, 1 pseudobonds 
    6749 
    6750 > delete atoms (#!9 & sel)
    6751 
    6752 > delete bonds (#!9 & sel)
    6753 
    6754 > save "E:/Documents/Map/SSX1/SSX1 Model
    6755 > building/SSX1和其他reader结构比较/53BP1-Dot1-BARD1-SSX1-JARID2.cxs" includeMaps
    6756 > true
    6757 
    6758 > select #5/U
    6759 
    6760 593 atoms, 599 bonds, 74 residues, 1 model selected 
    6761 
    6762 > hide sel surfaces
    6763 
    6764 > select clear
    6765 
    6766 > select #5/U:44
    6767 
    6768 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6769 
    6770 > show sel atoms
    6771 
    6772 > style sel stick
    6773 
    6774 Changed 8 atom styles 
    6775 
    6776 > color sel byhetero
    6777 
    6778 > select clear
    6779 
    6780 > select #5/U:44@CG2
    6781 
    6782 1 atom, 1 residue, 1 model selected 
    6783 
    6784 > select add #5/S:180@CG2
    6785 
    6786 2 atoms, 2 residues, 2 models selected 
    6787 
    6788 > ui tool show Distances
    6789 
    6790 > distance #5/U:44@CG2 #5/S:180@CG2
    6791 
    6792 Distance between 20220216_TZB_reversed_D182P183E184.pdb #5/U ILE 44 CG2 and /S
    6793 ILE 180 CG2: 4.130Å 
    6794 
    6795 > select clear
    6796 
    6797 > select #5/S:180
    6798 
    6799 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6800 
    6801 > style sel stick
    6802 
    6803 Changed 8 atom styles 
    6804 
    6805 > select clear
    6806 
    6807 > select #5/U:68
    6808 
    6809 10 atoms, 10 bonds, 1 residue, 1 model selected 
    6810 
    6811 > show sel atoms
    6812 
    6813 > style sel stick
    6814 
    6815 Changed 10 atom styles 
    6816 
    6817 > color sel byhetero
    6818 
    6819 > select clear
    6820 
    6821 > select #5/U:68@CE1
    6822 
    6823 1 atom, 1 residue, 1 model selected 
    6824 
    6825 > select add #5/S:180@CD1
    6826 
    6827 2 atoms, 2 residues, 2 models selected 
    6828 
    6829 > distance #5/U:68@CE1 #5/S:180@CD1
    6830 
    6831 Distance between 20220216_TZB_reversed_D182P183E184.pdb #5/U HIS 68 CE1 and /S
    6832 ILE 180 CD1: 4.196Å 
    6833 
    6834 > select clear
    6835 
    6836 > select clear
    6837 
    6838 > select #5/U
    6839 
    6840 593 atoms, 599 bonds, 74 residues, 1 model selected 
    6841 
    6842 > show sel surfaces
    6843 
    6844 > select #5/U
    6845 
    6846 593 atoms, 599 bonds, 74 residues, 1 model selected 
    6847 
    6848 > hide sel surfaces
    6849 
    6850 > select clear
    6851 
    6852 > select #5/U:8
    6853 
    6854 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6855 
    6856 > show sel atoms
    6857 
    6858 > color sel byhetero
    6859 
    6860 > select clear
    6861 
    6862 > select #5/U:8@CD1
    6863 
    6864 1 atom, 1 residue, 1 model selected 
    6865 
    6866 > select #5/U:8@CD2
    6867 
    6868 1 atom, 1 residue, 1 model selected 
    6869 
    6870 > view matrix models #5,1,0,0,13.989,0,1,0,2.1868,0,0,1,-0.37494
    6871 
    6872 > select #5/U:8@CA
    6873 
    6874 1 atom, 1 residue, 1 model selected 
    6875 
    6876 > select #5/U:8@CB
    6877 
    6878 1 atom, 1 residue, 1 model selected 
    6879 
    6880 > select #5/U:9
    6881 
    6882 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6883 
    6884 > select #5/U:8@CB
    6885 
    6886 1 atom, 1 residue, 1 model selected 
    6887 
    6888 > hide sel surfaces
    6889 
    6890 > select #5/U:8@CD1
    6891 
    6892 1 atom, 1 residue, 1 model selected 
    6893 
    6894 > select #5/U:8@CG
    6895 
    6896 1 atom, 1 residue, 1 model selected 
    6897 
    6898 > view matrix models #5,1,0,0,23.487,0,1,0,-5.434,0,0,1,-2.5084
    6899 
    6900 > select #5/U:8
    6901 
    6902 8 atoms, 7 bonds, 1 residue, 1 model selected 
    6903 
    6904 > select #5/U:8@CA
    6905 
    6906 1 atom, 1 residue, 1 model selected 
    6907 
    6908 > select #5/U:8@CB
    6909 
    6910 1 atom, 1 residue, 1 model selected 
    6911 
    6912 > select #5/I:-54
    6913 
    6914 19 atoms, 20 bonds, 1 residue, 1 model selected 
    6915 
    6916 > select #5/U:9
    6917 
    6918 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6919 
    6920 > select #5/U:9
    6921 
    6922 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6923 
    6924 > select #5/U:8@CB
    6925 
    6926 1 atom, 1 residue, 1 model selected 
    6927 
    6928 > select #5/U:8@CG
    6929 
    6930 1 atom, 1 residue, 1 model selected 
    6931 
    6932 > hide sel surfaces
    6933 
    6934 > select #5/U:8@CB
    6935 
    6936 1 atom, 1 residue, 1 model selected 
    6937 
    6938 > select #5/U:8@CB
    6939 
    6940 1 atom, 1 residue, 1 model selected 
    6941 
    6942 > select #5/U:7
    6943 
    6944 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6945 
    6946 > select #5/U:8@CB
    6947 
    6948 1 atom, 1 residue, 1 model selected 
    6949 
    6950 > view matrix models #5,1,0,0,19.724,0,1,0,-29.177,0,0,1,6.0333
    6951 
    6952 > select #5/U:8@CA
    6953 
    6954 1 atom, 1 residue, 1 model selected 
    6955 
    6956 > select #5/U:9
    6957 
    6958 7 atoms, 6 bonds, 1 residue, 1 model selected 
    6959 
    6960 > select #5/U:8@CA
    6961 
    6962 1 atom, 1 residue, 1 model selected 
    6963 
    6964 > select add #5/U:8@CB
    6965 
    6966 2 atoms, 1 residue, 2 models selected 
    6967 
    6968 > select add #5/U:8@CG
    6969 
    6970 3 atoms, 1 residue, 2 models selected 
    6971 
    6972 > select add #5/U:8@CD2
    6973 
    6974 4 atoms, 1 residue, 2 models selected 
    6975 
    6976 > select add #5/U:8@CD1
    6977 
    6978 5 atoms, 1 residue, 2 models selected 
    6979 
    6980 > hide sel surfaces
    6981 
    6982 > hide sel surfaces
    6983 
    6984 > hide sel surfaces
    6985 
    6986 > hide sel surfaces
    6987 
    6988 > style sel stick
    6989 
    6990 Changed 5 atom styles 
    6991 
    6992 > style sel stick
    6993 
    6994 Changed 5 atom styles 
    6995 
    6996 > style sel stick
    6997 
    6998 Changed 5 atom styles 
    6999 
    7000 > select clear
    7001 
    7002 > matchmaker #9/I to #5/A pairing ss
    7003 
    7004 Parameters 
    7005 --- 
    7006 Chain pairing | ss 
    7007 Alignment algorithm | Needleman-Wunsch 
    7008 Similarity matrix | BLOSUM-62 
    7009 SS fraction | 0.3 
    7010 Gap open (HH/SS/other) | 18/18/6 
    7011 Gap extend | 1 
    7012 SS matrix |  |  | H | S | O 
    7013 ---|---|---|--- 
    7014 H | 6 | -9 | -6 
    7015 S |  | 6 | -6 
    7016 O |  |  | 4 
    7017 Iteration cutoff | 2 
    7018  
    7019 Matchmaker 20220216_TZB_reversed_D182P183E184.pdb, chain A (#5) with 6wkr,
    7020 chain I (#9), sequence alignment score = 458.5 
    7021 RMSD between 97 pruned atom pairs is 0.677 angstroms; (across all 97 pairs:
    7022 0.677) 
    7023  
    7024 
    7025 > save "E:/Documents/Map/SSX1/SSX1 Model
    7026 > building/SSX1和其他reader结构比较/53BP1-Dot1-BARD1-SSX1-JARID2.cxs" includeMaps
    7027 > true
    7028 
    7029 ——— End of log from Mon Mar 7 21:25:31 2022 ———
    7030 
    7031 opened ChimeraX session 
    7032 
    7033 > select #9/F
    7034 
    7035 603 atoms, 609 bonds, 76 residues, 1 model selected 
    7036 
    7037 > select #1
    7038 
    7039 23 models selected 
    7040 
    7041 > ~select #1
    7042 
    7043 Nothing selected 
    7044 
    7045 > select #1
    7046 
    7047 23 models selected 
    7048 
    7049 > ~select #1
    7050 
    7051 Nothing selected 
    7052 
    7053 > select #2
    7054 
    7055 12363 atoms, 13136 bonds, 1122 residues, 3 models selected 
    7056 
    7057 > ~select #2
    7058 
    7059 12 models selected 
    7060 
    7061 > select #3
    7062 
    7063 2 models selected 
    7064 
    7065 > ~select #3
    7066 
    7067 Nothing selected 
    7068 
    7069 > select #4
    7070 
    7071 2 models selected 
    7072 
    7073 > ~select #4
    7074 
    7075 Nothing selected 
    7076 
    7077 > select #5
    7078 
    7079 12369 atoms, 13142 bonds, 2 pseudobonds, 1122 residues, 2 models selected 
    7080 
    7081 > ~select #5
    7082 
    7083 1 model selected 
    7084 
    7085 > hide #!5 models
    7086 
    7087 > show #!5 models
    7088 
    7089 > show #!4 models
    7090 
    7091 > show #!3 models
    7092 
    7093 > hide #!3 models
    7094 
    7095 > show #!3 models
    7096 
    7097 > show #!2 models
    7098 
    7099 > hide #!2 models
    7100 
    7101 > show #!2 models
    7102 
    7103 > hide #!2 models
    7104 
    7105 > hide #!3 models
    7106 
    7107 > hide #!4 models
    7108 
    7109 > hide #!5 models
    7110 
    7111 > hide #!1 models
    7112 
    7113 > show #!1 models
    7114 
    7115 > hide #!9 models
    7116 
    7117 > show #!9 models
    7118 
    7119 > hide #!10 models
    7120 
    7121 > hide #10.1 models
    7122 
    7123 No visible atoms or bonds selected 
    7124 
    7125 > select clear
    7126 
    7127 > select clear
    7128 
    7129 > ui tool show Matchmaker
    7130 
    7131 > ui tool show Distances
    7132 
    7133 > select clear
    7134 
    7135 > hide #!9 models
    7136 
    7137 > show #!9 models
    7138 
    7139 > show #!5 models
    7140 
    7141 > hide #!5 models
    7142 
    7143 > show #!5 models
    7144 
    7145 > select #9/F
    7146 
    7147 603 atoms, 609 bonds, 76 residues, 1 model selected 
    7148 
    7149 > delete atoms sel
    7150 
    7151 > delete bonds sel
    7152 
    7153 > select #9/P
    7154 
    7155 427 atoms, 433 bonds, 1 pseudobond, 69 residues, 2 models selected 
    7156 
    7157 > delete atoms (#!9 & sel)
    7158 
    7159 > delete bonds (#!9 & sel)
    7160 
    7161 > select clear
    7162 
    7163 > show #!2 models
    7164 
    7165 > hide #!2 models
    7166 
    7167 > show #!3 models
    7168 
    7169 > ui tool show Matchmaker
    7170 
    7171 > hide #!3 models
    7172 
    7173 > show #!3 models
    7174 
    7175 > hide #!5 models
    7176 
    7177 > hide #!3 models
    7178 
    7179 > show #!5 models
    7180 
    7181 Drag select of 75 atoms, 2340 residues, 64 bonds, 1 pseudobonds 
    7182 
    7183 > color (#!5,9 & sel) light gray
    7184 
    7185 > select clear
    7186 
    7187 > select #5/U
    7188 
    7189 593 atoms, 599 bonds, 74 residues, 1 model selected 
    7190 
    7191 > color (#!5 & sel) yellow
    7192 
    7193 > select clear
    7194 
    7195 > select #5/S
    7196 
    7197 205 atoms, 210 bonds, 23 residues, 1 model selected 
    7198 
    7199 > color sel magenta
    7200 
    7201 > select clear
    7202 
    7203 > select #9/T
    7204 
    7205 604 atoms, 610 bonds, 76 residues, 1 model selected 
    7206 
    7207 > color sel orange
    7208 
    7209 > select clear
    7210 
    7211 > select #9/E
    7212 
    7213 203 atoms, 203 bonds, 35 residues, 1 model selected 
    7214 
    7215 > color sel cyan
    7216 
    7217 > select clear
    7218 
    7219 > select #5/S
    7220 
    7221 205 atoms, 210 bonds, 23 residues, 1 model selected 
    7222 
    7223 > hide sel atoms
    7224 
    7225 > select #5/U
    7226 
    7227 593 atoms, 599 bonds, 74 residues, 1 model selected 
    7228 
    7229 > hide sel atoms
    7230 
    7231 > select clear
    7232 
    7233 > lighting soft
    7234 
    7235 > lighting soft intensity 0.4
    7236 
    7237 > cartoon style protein width 0.5 thickness 0.5
    7238 
    7239 > cartoon style protein width 0.5 thickness 1
    7240 
    7241 > cartoon style protein width 1 thickness 0.5
    7242 
    7243 > cartoon style protein width 1.5 thickness 0.5
    7244 
    7245 > undo
    7246 
    7247 > undo
    7248 
    7249 > undo
    7250 
    7251 > undo
    7252 
    7253 > lighting shadows true
    7254 
    7255 > lighting shadows false
    7256 
    7257 > graphics silhouettes false
    7258 
    7259 > lighting soft
    7260 
    7261 > lighting flat
    7262 
    7263 > lighting soft
    7264 
    7265 > lighting shadows true intensity 0.5
    7266 
    7267 > lighting shadows false
    7268 
    7269 > graphics silhouettes false
    7270 
    7271 > graphics silhouettes true
    7272 
    7273 > lighting soft
    7274 
    7275 > lighting simple
    7276 
    7277 > lighting soft
    7278 
    7279 > lighting soft intensity 0.4
    7280 
    7281 > save "E:/Documents/Map/SSX1/SSX1 Model
    7282 > building/SSX1和其他reader结构比较/SSX1-JARID2.cxs" includeMaps true
    7283 
    7284 ——— End of log from Sat Apr 2 14:08:23 2022 ———
    7285 
    7286 opened ChimeraX session 
    7287 
    7288 > hide #!1 models
    7289 
    7290 > hide #!5 models
    7291 
    7292 > select #9/T
    7293 
    7294 604 atoms, 610 bonds, 76 residues, 1 model selected 
    7295 
    7296 > show sel surfaces
    7297 
    7298 > undo
    7299 
    7300 > undo
    7301 
    7302 > hide #!9 surfaces
    7303 
    7304 > select #9/T
    7305 
    7306 604 atoms, 610 bonds, 76 residues, 1 model selected 
    7307 
    7308 > show sel surfaces
    7309 
    7310 > hide #9.1 models
    7311 
    7312 > show #9.1 models
    7313 
    7314 > hide #!9 models
    7315 
    7316 > show #!9 models
    7317 
    7318 > select clear
    7319 
    7320 > select #9/T
    7321 
    7322 604 atoms, 610 bonds, 76 residues, 1 model selected 
    7323 
    7324 > hide sel surfaces
    7325 
    7326 > select clear
    7327 
    7328 > select #9/T:44
    7329 
    7330 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7331 
    7332 > color (#!9 & sel) medium blue
    7333 
    7334 > select #9/T:68
    7335 
    7336 10 atoms, 10 bonds, 1 residue, 1 model selected 
    7337 
    7338 > color (#!9 & sel) medium blue
    7339 
    7340 > select clear
    7341 
    7342 > select #9/T:70
    7343 
    7344 7 atoms, 6 bonds, 1 residue, 1 model selected 
    7345 
    7346 > color (#!9 & sel) medium blue
    7347 
    7348 > select #9/T:8
    7349 
    7350 8 atoms, 7 bonds, 1 residue, 1 model selected 
    7351 
    7352 > color (#!9 & sel) medium blue
    7353 
    7354 > select clear
    7355 
    7356 > select #9/T
    7357 
    7358 604 atoms, 610 bonds, 76 residues, 1 model selected 
    7359 
    7360 > show sel surfaces
    7361 
    7362 > select clear
    7363 
    7364 > ui tool show "Side View"
    7365 
    7366 > save "E:/Documents/Map/SSX1/SSX1 Model
    7367 > building/SSX1和其他reader结构比较/SSX1-JARID2/JARID2-Ub surface.cxs" includeMaps
    7368 > true
    7369 
    7370 ——— End of log from Mon Apr 11 16:01:38 2022 ———
    7371 
    7372 opened ChimeraX session 
    7373 
    7374 > show #!6 models
    7375 
    7376 > hide #!6 models
    7377 
    7378 > show #!6 models
    7379 
    7380 > hide #!6 models
    7381 
    7382 > show #!7 models
    7383 
    7384 > hide #!7 models
    7385 
    7386 > show #!7 models
    7387 
    7388 > hide #!7 models
    7389 
    7390 > show #!1 models
    7391 
    7392 > hide #!1 models
    7393 
    7394 > show #!2 models
    7395 
    7396 > hide #!2 models
    7397 
    7398 > show #!2 models
    7399 
    7400 > hide #!2 models
    7401 
    7402 > show #!2 models
    7403 
    7404 > hide #!2 models
    7405 
    7406 > show #!5 models
    7407 
    7408 > hide #!5 models
    7409 
    7410 > show #!5 models
    7411 
    7412 > hide #!5 models
    7413 
    7414 > show #!10 models
    7415 
    7416 > hide #!9 models
    7417 
    7418 > hide #!10 models
    7419 
    7420 > show #!9 models
    7421 
    7422 > show #!8 models
    7423 
    7424 > hide #!9 models
    7425 
    7426 > show #!9 models
    7427 
    7428 > hide #!8 models
    7429 
    7430 > select #9
    7431 
    7432 13457 atoms, 14327 bonds, 459 pseudobonds, 1218 residues, 3 models selected 
    7433 
    7434 > show sel cartoons
    7435 
    7436 > show sel cartoons
    7437 
    7438 > show sel cartoons
    7439 
    7440 > show sel cartoons
    7441 
    7442 > open 6wkr
    7443 
    7444 Summary of feedback from opening 6wkr fetched from pdb 
    7445 --- 
    7446 warnings | Unknown polymer entity '14' near line 35601 
    7447 Missing or incomplete entity_poly_seq table. Inferred polymer connectivity. 
    7448  
    7449 6wkr title: 
    7450 PRC2-AEBP2-JARID2 bound to H2AK119ub1 nucleosome [more info...] 
    7451  
    7452 Chain information for 6wkr #11 
    7453 --- 
    7454 Chain | Description 
    7455 A | Polycomb protein SUZ12 
    7456 B E | Protein Jumonji 
    7457 C | Histone-lysine N-methyltransferase EZH2 
    7458 F T | Ubiquitin 
    7459 H | DNA (314-mer) 
    7460 I O | Histone H3.2 
    7461 J Q | Histone H4 
    7462 K R | Histone H2A type 1 
    7463 L | Polycomb protein EED 
    7464 M S | Histone H2B 1.1 
    7465 N | Histone-binding protein RBBP4 
    7466 P | Zinc finger protein AEBP2 
    7467  
    7468 Non-standard residues in 6wkr #11 
    7469 --- 
    7470 MG — magnesium ion 
    7471 ZN — zinc ion 
    7472  
    7473 
    7474 > hide atoms
    7475 
    7476 > select #11
    7477 
    7478 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    7479 
    7480 > ~select #11
    7481 
    7482 Nothing selected 
    7483 
    7484 > select #11
    7485 
    7486 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    7487 
    7488 > show sel cartoons
    7489 
    7490 > select clear
    7491 
    7492 > select #11 /c,n,l
    7493 
    7494 10258 atoms, 10529 bonds, 3 pseudobonds, 1364 residues, 2 models selected 
    7495 
    7496 > hide sel cartoons
    7497 
    7498 > select #11 /c,n,l,a
    7499 
    7500 13599 atoms, 13948 bonds, 10 pseudobonds, 1804 residues, 2 models selected 
    7501 
    7502 > hide sel cartoons
    7503 
    7504 > select #11 /c,n,l,a,p,b
    7505 
    7506 15236 atoms, 15618 bonds, 12 pseudobonds, 2040 residues, 2 models selected 
    7507 
    7508 > select #11 /c,n,l,a,b
    7509 
    7510 13889 atoms, 14242 bonds, 11 pseudobonds, 1846 residues, 2 models selected 
    7511 
    7512 > hide sel cartoons
    7513 
    7514 > select up
    7515 
    7516 29296 atoms, 30554 bonds, 13 pseudobonds, 3334 residues, 2 models selected 
    7517 
    7518 > select #11 /p:170-295
    7519 
    7520 929 atoms, 951 bonds, 126 residues, 1 model selected 
    7521 
    7522 > hide sel cartoons
    7523 
    7524 > select clear
    7525 
    7526 > hide #!11 models
    7527 
    7528 > show #!11 models
    7529 
    7530 > hide #!11 models
    7531 
    7532 > show #!11 models
    7533 
    7534 > hide #!9 models
    7535 
    7536 > select #11 /t,e
    7537 
    7538 807 atoms, 813 bonds, 111 residues, 1 model selected 
    7539 
    7540 > hide sel cartoons
    7541 
    7542 > select clear
    7543 
    7544 > show #!9 models
    7545 
    7546 > hide #!9 models
    7547 
    7548 > show #!9 models
    7549 
    7550 > select clear
    7551 
    7552 > select #11
    7553 
    7554 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    7555 
    7556 > ui mousemode right "translate selected models"
    7557 
    7558 Traceback (most recent call last): 
    7559 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7560 line 130, in invoke 
    7561 return self._func(self._name, data) 
    7562 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7563 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7564 self._update_distances() 
    7565 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7566 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7567 label_settings['text'] = fmt % pb.length 
    7568 ValueError: unsupported format character '-' (0x2d) at index 2 
    7569  
    7570 Error processing trigger "changes": 
    7571 ValueError: unsupported format character '-' (0x2d) at index 2 
    7572  
    7573 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7574 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7575 label_settings['text'] = fmt % pb.length 
    7576  
    7577 See log for complete Python traceback. 
    7578  
    7579 Traceback (most recent call last): 
    7580 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7581 line 130, in invoke 
    7582 return self._func(self._name, data) 
    7583 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7584 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7585 self._update_distances() 
    7586 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7587 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7588 label_settings['text'] = fmt % pb.length 
    7589 ValueError: unsupported format character '-' (0x2d) at index 2 
    7590  
    7591 Error processing trigger "changes": 
    7592 ValueError: unsupported format character '-' (0x2d) at index 2 
    7593  
    7594 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7595 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7596 label_settings['text'] = fmt % pb.length 
    7597  
    7598 See log for complete Python traceback. 
    7599  
    7600 Traceback (most recent call last): 
    7601 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7602 line 130, in invoke 
    7603 return self._func(self._name, data) 
    7604 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7605 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7606 self._update_distances() 
    7607 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7608 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7609 label_settings['text'] = fmt % pb.length 
    7610 ValueError: unsupported format character '-' (0x2d) at index 2 
    7611  
    7612 Error processing trigger "changes": 
    7613 ValueError: unsupported format character '-' (0x2d) at index 2 
    7614  
    7615 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7616 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7617 label_settings['text'] = fmt % pb.length 
    7618  
    7619 See log for complete Python traceback. 
    7620  
    7621 Traceback (most recent call last): 
    7622 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7623 line 130, in invoke 
    7624 return self._func(self._name, data) 
    7625 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7626 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7627 self._update_distances() 
    7628 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7629 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7630 label_settings['text'] = fmt % pb.length 
    7631 ValueError: unsupported format character '-' (0x2d) at index 2 
    7632  
    7633 Error processing trigger "changes": 
    7634 ValueError: unsupported format character '-' (0x2d) at index 2 
    7635  
    7636 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7637 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7638 label_settings['text'] = fmt % pb.length 
    7639  
    7640 See log for complete Python traceback. 
    7641  
    7642 Traceback (most recent call last): 
    7643 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7644 line 130, in invoke 
    7645 return self._func(self._name, data) 
    7646 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7647 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7648 self._update_distances() 
    7649 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7650 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7651 label_settings['text'] = fmt % pb.length 
    7652 ValueError: unsupported format character '-' (0x2d) at index 2 
    7653  
    7654 Error processing trigger "changes": 
    7655 ValueError: unsupported format character '-' (0x2d) at index 2 
    7656  
    7657 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7658 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7659 label_settings['text'] = fmt % pb.length 
    7660  
    7661 See log for complete Python traceback. 
    7662  
    7663 Traceback (most recent call last): 
    7664 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7665 line 130, in invoke 
    7666 return self._func(self._name, data) 
    7667 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7668 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7669 self._update_distances() 
    7670 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7671 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7672 label_settings['text'] = fmt % pb.length 
    7673 ValueError: unsupported format character '-' (0x2d) at index 2 
    7674  
    7675 Error processing trigger "changes": 
    7676 ValueError: unsupported format character '-' (0x2d) at index 2 
    7677  
    7678 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7679 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7680 label_settings['text'] = fmt % pb.length 
    7681  
    7682 See log for complete Python traceback. 
    7683  
    7684 
    7685 > view matrix models #11,1,0,0,-66.485,0,1,0,-108.97,0,0,1,-42.153
    7686 
    7687 Traceback (most recent call last): 
    7688 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7689 line 130, in invoke 
    7690 return self._func(self._name, data) 
    7691 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7692 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7693 self._update_distances() 
    7694 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7695 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7696 label_settings['text'] = fmt % pb.length 
    7697 ValueError: unsupported format character '-' (0x2d) at index 2 
    7698  
    7699 Error processing trigger "changes": 
    7700 ValueError: unsupported format character '-' (0x2d) at index 2 
    7701  
    7702 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7703 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7704 label_settings['text'] = fmt % pb.length 
    7705  
    7706 See log for complete Python traceback. 
    7707  
    7708 
    7709 > ~select #11
    7710 
    7711 Nothing selected 
    7712 
    7713 > select #11
    7714 
    7715 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    7716 Traceback (most recent call last): 
    7717 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7718 line 130, in invoke 
    7719 return self._func(self._name, data) 
    7720 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7721 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7722 self._update_distances() 
    7723 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7724 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7725 label_settings['text'] = fmt % pb.length 
    7726 ValueError: unsupported format character '-' (0x2d) at index 2 
    7727  
    7728 Error processing trigger "changes": 
    7729 ValueError: unsupported format character '-' (0x2d) at index 2 
    7730  
    7731 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7732 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7733 label_settings['text'] = fmt % pb.length 
    7734  
    7735 See log for complete Python traceback. 
    7736  
    7737 Traceback (most recent call last): 
    7738 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7739 line 130, in invoke 
    7740 return self._func(self._name, data) 
    7741 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7742 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7743 self._update_distances() 
    7744 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7745 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7746 label_settings['text'] = fmt % pb.length 
    7747 ValueError: unsupported format character '-' (0x2d) at index 2 
    7748  
    7749 Error processing trigger "changes": 
    7750 ValueError: unsupported format character '-' (0x2d) at index 2 
    7751  
    7752 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7753 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7754 label_settings['text'] = fmt % pb.length 
    7755  
    7756 See log for complete Python traceback. 
    7757  
    7758 
    7759 > view matrix models #11,1,0,0,-61.828,0,1,0,-110.2,0,0,1,-28.54
    7760 
    7761 Traceback (most recent call last): 
    7762 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7763 line 130, in invoke 
    7764 return self._func(self._name, data) 
    7765 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7766 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7767 self._update_distances() 
    7768 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7769 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7770 label_settings['text'] = fmt % pb.length 
    7771 ValueError: unsupported format character '-' (0x2d) at index 2 
    7772  
    7773 Error processing trigger "changes": 
    7774 ValueError: unsupported format character '-' (0x2d) at index 2 
    7775  
    7776 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7777 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7778 label_settings['text'] = fmt % pb.length 
    7779  
    7780 See log for complete Python traceback. 
    7781  
    7782 Traceback (most recent call last): 
    7783 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7784 line 130, in invoke 
    7785 return self._func(self._name, data) 
    7786 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7787 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7788 self._update_distances() 
    7789 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7790 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7791 label_settings['text'] = fmt % pb.length 
    7792 ValueError: unsupported format character '-' (0x2d) at index 2 
    7793  
    7794 Error processing trigger "changes": 
    7795 ValueError: unsupported format character '-' (0x2d) at index 2 
    7796  
    7797 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7798 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7799 label_settings['text'] = fmt % pb.length 
    7800  
    7801 See log for complete Python traceback. 
    7802  
    7803 Traceback (most recent call last): 
    7804 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7805 line 130, in invoke 
    7806 return self._func(self._name, data) 
    7807 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7808 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7809 self._update_distances() 
    7810 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7811 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7812 label_settings['text'] = fmt % pb.length 
    7813 ValueError: unsupported format character '-' (0x2d) at index 2 
    7814  
    7815 Error processing trigger "changes": 
    7816 ValueError: unsupported format character '-' (0x2d) at index 2 
    7817  
    7818 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7819 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7820 label_settings['text'] = fmt % pb.length 
    7821  
    7822 See log for complete Python traceback. 
    7823  
    7824 Traceback (most recent call last): 
    7825 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7826 line 130, in invoke 
    7827 return self._func(self._name, data) 
    7828 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7829 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7830 self._update_distances() 
    7831 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7832 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7833 label_settings['text'] = fmt % pb.length 
    7834 ValueError: unsupported format character '-' (0x2d) at index 2 
    7835  
    7836 Error processing trigger "changes": 
    7837 ValueError: unsupported format character '-' (0x2d) at index 2 
    7838  
    7839 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7840 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7841 label_settings['text'] = fmt % pb.length 
    7842  
    7843 See log for complete Python traceback. 
    7844  
    7845 Traceback (most recent call last): 
    7846 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7847 line 130, in invoke 
    7848 return self._func(self._name, data) 
    7849 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7850 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7851 self._update_distances() 
    7852 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7853 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7854 label_settings['text'] = fmt % pb.length 
    7855 ValueError: unsupported format character '-' (0x2d) at index 2 
    7856  
    7857 Error processing trigger "changes": 
    7858 ValueError: unsupported format character '-' (0x2d) at index 2 
    7859  
    7860 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7861 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7862 label_settings['text'] = fmt % pb.length 
    7863  
    7864 See log for complete Python traceback. 
    7865  
    7866 Traceback (most recent call last): 
    7867 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7868 line 130, in invoke 
    7869 return self._func(self._name, data) 
    7870 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7871 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7872 self._update_distances() 
    7873 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7874 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7875 label_settings['text'] = fmt % pb.length 
    7876 ValueError: unsupported format character '-' (0x2d) at index 2 
    7877  
    7878 Error processing trigger "changes": 
    7879 ValueError: unsupported format character '-' (0x2d) at index 2 
    7880  
    7881 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7882 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7883 label_settings['text'] = fmt % pb.length 
    7884  
    7885 See log for complete Python traceback. 
    7886  
    7887 Traceback (most recent call last): 
    7888 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7889 line 130, in invoke 
    7890 return self._func(self._name, data) 
    7891 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7892 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7893 self._update_distances() 
    7894 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7895 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7896 label_settings['text'] = fmt % pb.length 
    7897 ValueError: unsupported format character '-' (0x2d) at index 2 
    7898  
    7899 Error processing trigger "changes": 
    7900 ValueError: unsupported format character '-' (0x2d) at index 2 
    7901  
    7902 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7903 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7904 label_settings['text'] = fmt % pb.length 
    7905  
    7906 See log for complete Python traceback. 
    7907  
    7908 Traceback (most recent call last): 
    7909 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7910 line 130, in invoke 
    7911 return self._func(self._name, data) 
    7912 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7913 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7914 self._update_distances() 
    7915 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7916 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7917 label_settings['text'] = fmt % pb.length 
    7918 ValueError: unsupported format character '-' (0x2d) at index 2 
    7919  
    7920 Error processing trigger "changes": 
    7921 ValueError: unsupported format character '-' (0x2d) at index 2 
    7922  
    7923 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7924 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7925 label_settings['text'] = fmt % pb.length 
    7926  
    7927 See log for complete Python traceback. 
    7928  
    7929 Traceback (most recent call last): 
    7930 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7931 line 130, in invoke 
    7932 return self._func(self._name, data) 
    7933 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7934 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7935 self._update_distances() 
    7936 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7937 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7938 label_settings['text'] = fmt % pb.length 
    7939 ValueError: unsupported format character '-' (0x2d) at index 2 
    7940  
    7941 Error processing trigger "changes": 
    7942 ValueError: unsupported format character '-' (0x2d) at index 2 
    7943  
    7944 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7945 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7946 label_settings['text'] = fmt % pb.length 
    7947  
    7948 See log for complete Python traceback. 
    7949  
    7950 Traceback (most recent call last): 
    7951 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7952 line 130, in invoke 
    7953 return self._func(self._name, data) 
    7954 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7955 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7956 self._update_distances() 
    7957 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7958 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7959 label_settings['text'] = fmt % pb.length 
    7960 ValueError: unsupported format character '-' (0x2d) at index 2 
    7961  
    7962 Error processing trigger "changes": 
    7963 ValueError: unsupported format character '-' (0x2d) at index 2 
    7964  
    7965 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7966 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7967 label_settings['text'] = fmt % pb.length 
    7968  
    7969 See log for complete Python traceback. 
    7970  
    7971 Traceback (most recent call last): 
    7972 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    7973 line 130, in invoke 
    7974 return self._func(self._name, data) 
    7975 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7976 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    7977 self._update_distances() 
    7978 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7979 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7980 label_settings['text'] = fmt % pb.length 
    7981 ValueError: unsupported format character '-' (0x2d) at index 2 
    7982  
    7983 Error processing trigger "changes": 
    7984 ValueError: unsupported format character '-' (0x2d) at index 2 
    7985  
    7986 File "D:\ChimeraX 1.2.5\bin\lib\site-
    7987 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    7988 label_settings['text'] = fmt % pb.length 
    7989  
    7990 See log for complete Python traceback. 
    7991  
    7992 
    7993 > view matrix models #11,1,0,0,-124.14,0,1,0,-124.46,0,0,1,-173.17
    7994 
    7995 > hide #!9 models
    7996 
    7997 > ~select #11
    7998 
    7999 Nothing selected 
    8000 
    8001 > select #11
    8002 
    8003 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8004 
    8005 > ~select #11
    8006 
    8007 Nothing selected 
    8008 
    8009 > select clear
    8010 
    8011 > select #11
    8012 
    8013 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8014 
    8015 > show sel surfaces
    8016 
    8017 > hide sel surfaces
    8018 
    8019 > select clear
    8020 
    8021 > view
    8022 
    8023 Drag select of 1250 residues, 1 pseudobonds 
    8024 
    8025 > show sel surfaces
    8026 
    8027 > select clear
    8028 
    8029 > select #11
    8030 
    8031 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8032 
    8033 > ui tool show "Color Actions"
    8034 
    8035 > color sel light gray
    8036 
    8037 > color (#!11 & sel) #d3d3d3ff
    8038 
    8039 > select clear
    8040 
    8041 > select #11
    8042 
    8043 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8044 
    8045 > transparency (#!11 & sel) 50
    8046 
    8047 > select clear
    8048 
    8049 > hide #!11 models
    8050 
    8051 > show #!11 models
    8052 
    8053 > select #11
    8054 
    8055 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8056 
    8057 > transparency (#!11 & sel) 30
    8058 
    8059 > select clear
    8060 
    8061 > select #11
    8062 
    8063 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8064 
    8065 > select clear
    8066 
    8067 > select #11 /f
    8068 
    8069 603 atoms, 609 bonds, 76 residues, 1 model selected 
    8070 
    8071 > color (#!11 & sel) #ffceb9ff
    8072 
    8073 > select clear
    8074 
    8075 > select #11 /p
    8076 
    8077 1347 atoms, 1376 bonds, 1 pseudobond, 194 residues, 2 models selected 
    8078 
    8079 > color (#!11 & sel) #ead2e6ff
    8080 
    8081 > hide sel surfaces
    8082 
    8083 > select clear
    8084 
    8085 > hide #!11 models
    8086 
    8087 > show #!11 models
    8088 
    8089 > hide #!11 models
    8090 
    8091 > show #!7 models
    8092 
    8093 > hide #!7 models
    8094 
    8095 > show #!9 models
    8096 
    8097 > show #!11 models
    8098 
    8099 > hide #!9 models
    8100 
    8101 > select #11 /f:8,70,68,44
    8102 
    8103 33 atoms, 30 bonds, 4 residues, 1 model selected 
    8104 
    8105 > select #11 /f:71,73,36
    8106 
    8107 24 atoms, 21 bonds, 3 residues, 1 model selected 
    8108 
    8109 > select #11
    8110 
    8111 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8112 
    8113 > ~select #11
    8114 
    8115 18 models selected 
    8116 
    8117 > select #11
    8118 
    8119 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8120 
    8121 > preset "overall look" publication
    8122 
    8123 Preset expands to these ChimeraX commands:
    8124 
    8125    
    8126    
    8127     set bg white
    8128     graphics silhouettes t
    8129 
    8130  
    8131 
    8132 > lighting soft
    8133 
    8134 Traceback (most recent call last): 
    8135 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8136 line 130, in invoke 
    8137 return self._func(self._name, data) 
    8138 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8139 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8140 self._update_distances() 
    8141 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8142 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8143 label_settings['text'] = fmt % pb.length 
    8144 ValueError: unsupported format character '-' (0x2d) at index 2 
    8145  
    8146 Error processing trigger "changes": 
    8147 ValueError: unsupported format character '-' (0x2d) at index 2 
    8148  
    8149 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8150 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8151 label_settings['text'] = fmt % pb.length 
    8152  
    8153 See log for complete Python traceback. 
    8154  
    8155 Traceback (most recent call last): 
    8156 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8157 line 130, in invoke 
    8158 return self._func(self._name, data) 
    8159 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8160 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8161 self._update_distances() 
    8162 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8163 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8164 label_settings['text'] = fmt % pb.length 
    8165 ValueError: unsupported format character '-' (0x2d) at index 2 
    8166  
    8167 Error processing trigger "changes": 
    8168 ValueError: unsupported format character '-' (0x2d) at index 2 
    8169  
    8170 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8171 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8172 label_settings['text'] = fmt % pb.length 
    8173  
    8174 See log for complete Python traceback. 
    8175  
    8176 Traceback (most recent call last): 
    8177 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8178 line 130, in invoke 
    8179 return self._func(self._name, data) 
    8180 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8181 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8182 self._update_distances() 
    8183 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8184 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8185 label_settings['text'] = fmt % pb.length 
    8186 ValueError: unsupported format character '-' (0x2d) at index 2 
    8187  
    8188 Error processing trigger "changes": 
    8189 ValueError: unsupported format character '-' (0x2d) at index 2 
    8190  
    8191 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8192 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8193 label_settings['text'] = fmt % pb.length 
    8194  
    8195 See log for complete Python traceback. 
    8196  
    8197 Traceback (most recent call last): 
    8198 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8199 line 130, in invoke 
    8200 return self._func(self._name, data) 
    8201 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8202 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8203 self._update_distances() 
    8204 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8205 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8206 label_settings['text'] = fmt % pb.length 
    8207 ValueError: unsupported format character '-' (0x2d) at index 2 
    8208  
    8209 Error processing trigger "changes": 
    8210 ValueError: unsupported format character '-' (0x2d) at index 2 
    8211  
    8212 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8213 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8214 label_settings['text'] = fmt % pb.length 
    8215  
    8216 See log for complete Python traceback. 
    8217  
    8218 Traceback (most recent call last): 
    8219 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8220 line 130, in invoke 
    8221 return self._func(self._name, data) 
    8222 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8223 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8224 self._update_distances() 
    8225 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8226 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8227 label_settings['text'] = fmt % pb.length 
    8228 ValueError: unsupported format character '-' (0x2d) at index 2 
    8229  
    8230 Error processing trigger "changes": 
    8231 ValueError: unsupported format character '-' (0x2d) at index 2 
    8232  
    8233 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8234 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8235 label_settings['text'] = fmt % pb.length 
    8236  
    8237 See log for complete Python traceback. 
    8238  
    8239 Traceback (most recent call last): 
    8240 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8241 line 130, in invoke 
    8242 return self._func(self._name, data) 
    8243 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8244 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8245 self._update_distances() 
    8246 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8247 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8248 label_settings['text'] = fmt % pb.length 
    8249 ValueError: unsupported format character '-' (0x2d) at index 2 
    8250  
    8251 Error processing trigger "changes": 
    8252 ValueError: unsupported format character '-' (0x2d) at index 2 
    8253  
    8254 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8255 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8256 label_settings['text'] = fmt % pb.length 
    8257  
    8258 See log for complete Python traceback. 
    8259  
    8260 Traceback (most recent call last): 
    8261 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8262 line 130, in invoke 
    8263 return self._func(self._name, data) 
    8264 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8265 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8266 self._update_distances() 
    8267 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8268 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8269 label_settings['text'] = fmt % pb.length 
    8270 ValueError: unsupported format character '-' (0x2d) at index 2 
    8271  
    8272 Error processing trigger "changes": 
    8273 ValueError: unsupported format character '-' (0x2d) at index 2 
    8274  
    8275 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8276 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8277 label_settings['text'] = fmt % pb.length 
    8278  
    8279 See log for complete Python traceback. 
    8280  
    8281 Traceback (most recent call last): 
    8282 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8283 line 130, in invoke 
    8284 return self._func(self._name, data) 
    8285 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8286 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8287 self._update_distances() 
    8288 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8289 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8290 label_settings['text'] = fmt % pb.length 
    8291 ValueError: unsupported format character '-' (0x2d) at index 2 
    8292  
    8293 Error processing trigger "changes": 
    8294 ValueError: unsupported format character '-' (0x2d) at index 2 
    8295  
    8296 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8297 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8298 label_settings['text'] = fmt % pb.length 
    8299  
    8300 See log for complete Python traceback. 
    8301  
    8302 Traceback (most recent call last): 
    8303 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8304 line 130, in invoke 
    8305 return self._func(self._name, data) 
    8306 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8307 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8308 self._update_distances() 
    8309 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8310 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8311 label_settings['text'] = fmt % pb.length 
    8312 ValueError: unsupported format character '-' (0x2d) at index 2 
    8313  
    8314 Error processing trigger "changes": 
    8315 ValueError: unsupported format character '-' (0x2d) at index 2 
    8316  
    8317 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8318 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8319 label_settings['text'] = fmt % pb.length 
    8320  
    8321 See log for complete Python traceback. 
    8322  
    8323 Traceback (most recent call last): 
    8324 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8325 line 130, in invoke 
    8326 return self._func(self._name, data) 
    8327 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8328 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8329 self._update_distances() 
    8330 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8331 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8332 label_settings['text'] = fmt % pb.length 
    8333 ValueError: unsupported format character '-' (0x2d) at index 2 
    8334  
    8335 Error processing trigger "changes": 
    8336 ValueError: unsupported format character '-' (0x2d) at index 2 
    8337  
    8338 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8339 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8340 label_settings['text'] = fmt % pb.length 
    8341  
    8342 See log for complete Python traceback. 
    8343  
    8344 Traceback (most recent call last): 
    8345 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8346 line 130, in invoke 
    8347 return self._func(self._name, data) 
    8348 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8349 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8350 self._update_distances() 
    8351 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8352 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8353 label_settings['text'] = fmt % pb.length 
    8354 ValueError: unsupported format character '-' (0x2d) at index 2 
    8355  
    8356 Error processing trigger "changes": 
    8357 ValueError: unsupported format character '-' (0x2d) at index 2 
    8358  
    8359 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8360 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8361 label_settings['text'] = fmt % pb.length 
    8362  
    8363 See log for complete Python traceback. 
    8364  
    8365 Traceback (most recent call last): 
    8366 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8367 line 130, in invoke 
    8368 return self._func(self._name, data) 
    8369 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8370 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8371 self._update_distances() 
    8372 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8373 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8374 label_settings['text'] = fmt % pb.length 
    8375 ValueError: unsupported format character '-' (0x2d) at index 2 
    8376  
    8377 Error processing trigger "changes": 
    8378 ValueError: unsupported format character '-' (0x2d) at index 2 
    8379  
    8380 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8381 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8382 label_settings['text'] = fmt % pb.length 
    8383  
    8384 See log for complete Python traceback. 
    8385  
    8386 Traceback (most recent call last): 
    8387 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8388 line 130, in invoke 
    8389 return self._func(self._name, data) 
    8390 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8391 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8392 self._update_distances() 
    8393 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8394 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8395 label_settings['text'] = fmt % pb.length 
    8396 ValueError: unsupported format character '-' (0x2d) at index 2 
    8397  
    8398 Error processing trigger "changes": 
    8399 ValueError: unsupported format character '-' (0x2d) at index 2 
    8400  
    8401 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8402 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8403 label_settings['text'] = fmt % pb.length 
    8404  
    8405 See log for complete Python traceback. 
    8406  
    8407 Traceback (most recent call last): 
    8408 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8409 line 130, in invoke 
    8410 return self._func(self._name, data) 
    8411 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8412 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8413 self._update_distances() 
    8414 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8415 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8416 label_settings['text'] = fmt % pb.length 
    8417 ValueError: unsupported format character '-' (0x2d) at index 2 
    8418  
    8419 Error processing trigger "changes": 
    8420 ValueError: unsupported format character '-' (0x2d) at index 2 
    8421  
    8422 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8423 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8424 label_settings['text'] = fmt % pb.length 
    8425  
    8426 See log for complete Python traceback. 
    8427  
    8428 
    8429 > view matrix models #11,1,0,0,-127.77,0,1,0,-116.02,0,0,1,-185.3
    8430 
    8431 Traceback (most recent call last): 
    8432 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8433 line 130, in invoke 
    8434 return self._func(self._name, data) 
    8435 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8436 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8437 self._update_distances() 
    8438 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8439 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8440 label_settings['text'] = fmt % pb.length 
    8441 ValueError: unsupported format character '-' (0x2d) at index 2 
    8442  
    8443 Error processing trigger "changes": 
    8444 ValueError: unsupported format character '-' (0x2d) at index 2 
    8445  
    8446 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8447 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8448 label_settings['text'] = fmt % pb.length 
    8449  
    8450 See log for complete Python traceback. 
    8451  
    8452 
    8453 > select #11 /f:61
    8454 
    8455 8 atoms, 7 bonds, 1 residue, 1 model selected 
    8456 
    8457 > select #11 /f:61,60,62
    8458 
    8459 25 atoms, 24 bonds, 3 residues, 1 model selected 
    8460 
    8461 > color (#!11 & sel) medium blue
    8462 
    8463 > select clear
    8464 
    8465 > lighting soft intensity 0.4
    8466 
    8467 > select clear
    8468 
    8469 > select #11
    8470 
    8471 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 3 models selected 
    8472 
    8473 > hide sel surfaces
    8474 
    8475 > select up
    8476 
    8477 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 21 models selected 
    8478 
    8479 > select up
    8480 
    8481 29296 atoms, 30554 bonds, 471 pseudobonds, 3334 residues, 21 models selected 
    8482 
    8483 > select #11 /f
    8484 
    8485 603 atoms, 609 bonds, 76 residues, 1 model selected 
    8486 
    8487 > show sel surfaces
    8488 
    8489 > select clear
    8490 
    8491 > select #11 /f
    8492 
    8493 603 atoms, 609 bonds, 76 residues, 1 model selected 
    8494 
    8495 > color (#!11 & sel) byelement
    8496 
    8497 > color (#!11 & sel) #00c6cfff
    8498 
    8499 > color (#!11 & sel) byelement
    8500 
    8501 > color (#!11 & sel) #7fd1aeff
    8502 
    8503 > select #11 /p
    8504 
    8505 1347 atoms, 1376 bonds, 1 pseudobond, 194 residues, 2 models selected 
    8506 
    8507 > color (#!11 & sel) #00c6cfff
    8508 
    8509 > select #11 /f:62,60
    8510 
    8511 17 atoms, 15 bonds, 2 residues, 1 model selected 
    8512 
    8513 > select #11 /f:62,60,61
    8514 
    8515 25 atoms, 24 bonds, 3 residues, 1 model selected 
    8516 
    8517 > color (#!11 & sel) medium blue
    8518 
    8519 > select clear
    8520 
    8521 > save "F:/Documents/Map/SSX1/SSX1 Model
    8522 > building/SSX1和其他reader结构比较/SSX1-AEBP2/AEBP2.cxs" includeMaps true
    8523 
    8524 > save "F:/Documents/Map/SSX1/SSX1 Model
    8525 > building/SSX1和其他reader结构比较/SSX1-AEBP2/AEBP2.png" width 4640 height 3000
    8526 > supersample 4
    8527 
    8528 > select #11 /p
    8529 
    8530 1347 atoms, 1376 bonds, 1 pseudobond, 194 residues, 2 models selected 
    8531 
    8532 > color (#!11 & sel) #8685efff
    8533 
    8534 > select clear
    8535 
    8536 > save "F:/Documents/Map/SSX1/SSX1 Model
    8537 > building/SSX1和其他reader结构比较/SSX1-AEBP2/AEBP2.png" width 4640 height 3000
    8538 > supersample 4
    8539 
    8540 > save "F:/Documents/Map/SSX1/SSX1 Model
    8541 > building/SSX1和其他reader结构比较/SSX1-AEBP2/AEBP2.cxs" includeMaps true
    8542 
    8543 ——— End of log from Wed Nov 9 14:32:51 2022 ———
    8544 
    8545 opened ChimeraX session 
    8546 
    8547 > hide #!11 models
    8548 
    8549 > show #!11 models
    8550 
    8551 > open "F:/Documents/Map/SSX1/SSX1 Model building/Wincoot PDB
    8552 > Save/202206/202200807_SSX1_119Ub_Second_phenix_real_space_refined-
    8553 > coot-0.pdb"
    8554 
    8555 Summary of feedback from opening F:/Documents/Map/SSX1/SSX1 Model
    8556 building/Wincoot PDB
    8557 Save/202206/202200807_SSX1_119Ub_Second_phenix_real_space_refined-coot-0.pdb 
    8558 --- 
    8559 warnings | Ignored bad PDB record found on line 20 
    8560 DEVIATIONS FROM IDEAL VALUES. 
    8561  
    8562 Ignored bad PDB record found on line 21 
    8563 BOND : 0.010 0.091 13142 
    8564  
    8565 Ignored bad PDB record found on line 22 
    8566 ANGLE : 0.877 18.214 18918 
    8567  
    8568 Ignored bad PDB record found on line 23 
    8569 CHIRALITY : 0.051 0.207 2159 
    8570  
    8571 Ignored bad PDB record found on line 24 
    8572 PLANARITY : 0.005 0.046 1444 
    8573  
    8574 16 messages similar to the above omitted 
    8575  
    8576 Chain information for 202200807_SSX1_119Ub_Second_phenix_real_space_refined-
    8577 coot-0.pdb #12 
    8578 --- 
    8579 Chain | Description 
    8580 A | No description available 
    8581 B | No description available 
    8582 C | No description available 
    8583 D H | No description available 
    8584 E | No description available 
    8585 F | No description available 
    8586 G | No description available 
    8587 I | No description available 
    8588 J | No description available 
    8589 S | No description available 
    8590 U | No description available 
    8591  
    8592 
    8593 > select #12
    8594 
    8595 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    8596 
    8597 > hide sel atoms
    8598 
    8599 > show sel cartoons
    8600 
    8601 > select clear
    8602 
    8603 > select #12
    8604 
    8605 12369 atoms, 13142 bonds, 1122 residues, 1 model selected 
    8606 
    8607 > select clear
    8608 
    8609 > ui tool show Matchmaker
    8610 
    8611 > hide #!11 models
    8612 
    8613 > show #!11 models
    8614 
    8615 > matchmaker #9/S to #12/D pairing ss
    8616 
    8617 Parameters 
    8618 --- 
    8619 Chain pairing | ss 
    8620 Alignment algorithm | Needleman-Wunsch 
    8621 Similarity matrix | BLOSUM-62 
    8622 SS fraction | 0.3 
    8623 Gap open (HH/SS/other) | 18/18/6 
    8624 Gap extend | 1 
    8625 SS matrix |  |  | H | S | O 
    8626 ---|---|---|--- 
    8627 H | 6 | -9 | -6 
    8628 S |  | 6 | -6 
    8629 O |  |  | 4 
    8630 Iteration cutoff | 2 
    8631  
    8632 Matchmaker 202200807_SSX1_119Ub_Second_phenix_real_space_refined-coot-0.pdb,
    8633 chain D (#12) with 6wkr, chain S (#9), sequence alignment score = 444.8 
    8634 RMSD between 90 pruned atom pairs is 0.548 angstroms; (across all 91 pairs:
    8635 0.593) 
    8636  
    8637 Traceback (most recent call last): 
    8638 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8639 line 130, in invoke 
    8640 return self._func(self._name, data) 
    8641 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8642 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8643 self._update_distances() 
    8644 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8645 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8646 label_settings['text'] = fmt % pb.length 
    8647 ValueError: unsupported format character '-' (0x2d) at index 2 
    8648  
    8649 Error processing trigger "changes": 
    8650 ValueError: unsupported format character '-' (0x2d) at index 2 
    8651  
    8652 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8653 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8654 label_settings['text'] = fmt % pb.length 
    8655  
    8656 See log for complete Python traceback. 
    8657  
    8658 
    8659 > matchmaker #9/S to #12/D pairing ss
    8660 
    8661 Parameters 
    8662 --- 
    8663 Chain pairing | ss 
    8664 Alignment algorithm | Needleman-Wunsch 
    8665 Similarity matrix | BLOSUM-62 
    8666 SS fraction | 0.3 
    8667 Gap open (HH/SS/other) | 18/18/6 
    8668 Gap extend | 1 
    8669 SS matrix |  |  | H | S | O 
    8670 ---|---|---|--- 
    8671 H | 6 | -9 | -6 
    8672 S |  | 6 | -6 
    8673 O |  |  | 4 
    8674 Iteration cutoff | 2 
    8675  
    8676 Matchmaker 202200807_SSX1_119Ub_Second_phenix_real_space_refined-coot-0.pdb,
    8677 chain D (#12) with 6wkr, chain S (#9), sequence alignment score = 444.8 
    8678 RMSD between 90 pruned atom pairs is 0.548 angstroms; (across all 91 pairs:
    8679 0.593) 
    8680  
    8681 Traceback (most recent call last): 
    8682 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8683 line 130, in invoke 
    8684 return self._func(self._name, data) 
    8685 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8686 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8687 self._update_distances() 
    8688 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8689 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8690 label_settings['text'] = fmt % pb.length 
    8691 ValueError: unsupported format character '-' (0x2d) at index 2 
    8692  
    8693 Error processing trigger "changes": 
    8694 ValueError: unsupported format character '-' (0x2d) at index 2 
    8695  
    8696 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8697 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8698 label_settings['text'] = fmt % pb.length 
    8699  
    8700 See log for complete Python traceback. 
    8701  
    8702 
    8703 > matchmaker #9/S to #12/D pairing ss
    8704 
    8705 Parameters 
    8706 --- 
    8707 Chain pairing | ss 
    8708 Alignment algorithm | Needleman-Wunsch 
    8709 Similarity matrix | BLOSUM-62 
    8710 SS fraction | 0.3 
    8711 Gap open (HH/SS/other) | 18/18/6 
    8712 Gap extend | 1 
    8713 SS matrix |  |  | H | S | O 
    8714 ---|---|---|--- 
    8715 H | 6 | -9 | -6 
    8716 S |  | 6 | -6 
    8717 O |  |  | 4 
    8718 Iteration cutoff | 2 
    8719  
    8720 Matchmaker 202200807_SSX1_119Ub_Second_phenix_real_space_refined-coot-0.pdb,
    8721 chain D (#12) with 6wkr, chain S (#9), sequence alignment score = 444.8 
    8722 RMSD between 90 pruned atom pairs is 0.548 angstroms; (across all 91 pairs:
    8723 0.593) 
    8724  
    8725 Traceback (most recent call last): 
    8726 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8727 line 130, in invoke 
    8728 return self._func(self._name, data) 
    8729 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8730 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8731 self._update_distances() 
    8732 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8733 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8734 label_settings['text'] = fmt % pb.length 
    8735 ValueError: unsupported format character '-' (0x2d) at index 2 
    8736  
    8737 Error processing trigger "changes": 
    8738 ValueError: unsupported format character '-' (0x2d) at index 2 
    8739  
    8740 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8741 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8742 label_settings['text'] = fmt % pb.length 
    8743  
    8744 See log for complete Python traceback. 
    8745  
    8746 
    8747 > matchmaker #9/S to #12/D pairing ss
    8748 
    8749 Parameters 
    8750 --- 
    8751 Chain pairing | ss 
    8752 Alignment algorithm | Needleman-Wunsch 
    8753 Similarity matrix | BLOSUM-62 
    8754 SS fraction | 0.3 
    8755 Gap open (HH/SS/other) | 18/18/6 
    8756 Gap extend | 1 
    8757 SS matrix |  |  | H | S | O 
    8758 ---|---|---|--- 
    8759 H | 6 | -9 | -6 
    8760 S |  | 6 | -6 
    8761 O |  |  | 4 
    8762 Iteration cutoff | 2 
    8763  
    8764 Matchmaker 202200807_SSX1_119Ub_Second_phenix_real_space_refined-coot-0.pdb,
    8765 chain D (#12) with 6wkr, chain S (#9), sequence alignment score = 444.8 
    8766 RMSD between 90 pruned atom pairs is 0.548 angstroms; (across all 91 pairs:
    8767 0.593) 
    8768  
    8769 Traceback (most recent call last): 
    8770 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8771 line 130, in invoke 
    8772 return self._func(self._name, data) 
    8773 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8774 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8775 self._update_distances() 
    8776 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8777 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8778 label_settings['text'] = fmt % pb.length 
    8779 ValueError: unsupported format character '-' (0x2d) at index 2 
    8780  
    8781 Error processing trigger "changes": 
    8782 ValueError: unsupported format character '-' (0x2d) at index 2 
    8783  
    8784 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8785 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8786 label_settings['text'] = fmt % pb.length 
    8787  
    8788 See log for complete Python traceback. 
    8789  
    8790 
    8791 > hide #12 models
    8792 
    8793 > show #12 models
    8794 
    8795 > show #!9 models
    8796 
    8797 > hide #!11 models
    8798 
    8799 > ui mousemode right "translate selected models"
    8800 
    8801 > show #!11 models
    8802 
    8803 > hide #!11 models
    8804 
    8805 > show #!11 models
    8806 
    8807 > hide #!9 models
    8808 
    8809 > matchmaker #11/S to #12/D pairing ss
    8810 
    8811 Parameters 
    8812 --- 
    8813 Chain pairing | ss 
    8814 Alignment algorithm | Needleman-Wunsch 
    8815 Similarity matrix | BLOSUM-62 
    8816 SS fraction | 0.3 
    8817 Gap open (HH/SS/other) | 18/18/6 
    8818 Gap extend | 1 
    8819 SS matrix |  |  | H | S | O 
    8820 ---|---|---|--- 
    8821 H | 6 | -9 | -6 
    8822 S |  | 6 | -6 
    8823 O |  |  | 4 
    8824 Iteration cutoff | 2 
    8825  
    8826 Matchmaker 202200807_SSX1_119Ub_Second_phenix_real_space_refined-coot-0.pdb,
    8827 chain D (#12) with 6wkr, chain S (#11), sequence alignment score = 444.8 
    8828 RMSD between 90 pruned atom pairs is 0.548 angstroms; (across all 91 pairs:
    8829 0.593) 
    8830  
    8831 Traceback (most recent call last): 
    8832 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8833 line 130, in invoke 
    8834 return self._func(self._name, data) 
    8835 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8836 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8837 self._update_distances() 
    8838 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8839 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8840 label_settings['text'] = fmt % pb.length 
    8841 ValueError: unsupported format character '-' (0x2d) at index 2 
    8842  
    8843 Error processing trigger "changes": 
    8844 ValueError: unsupported format character '-' (0x2d) at index 2 
    8845  
    8846 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8847 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8848 label_settings['text'] = fmt % pb.length 
    8849  
    8850 See log for complete Python traceback. 
    8851  
    8852 Drag select of 133 residues 
    8853 
    8854 > select clear
    8855 
    8856 > hide #!11 models
    8857 
    8858 > show #!11 models
    8859 
    8860 > select #11 /f
    8861 
    8862 603 atoms, 609 bonds, 76 residues, 1 model selected 
    8863 
    8864 > hide sel surfaces
    8865 
    8866 > select clear
    8867 
    8868 > select #11/F:27
    8869 
    8870 9 atoms, 8 bonds, 1 residue, 1 model selected 
    8871 
    8872 > select #11/F:28
    8873 
    8874 5 atoms, 4 bonds, 1 residue, 1 model selected 
    8875 
    8876 > show sel atoms
    8877 
    8878 > style sel stick
    8879 
    8880 Changed 5 atom styles 
    8881 
    8882 > select clear
    8883 
    8884 > select #12/U:28
    8885 
    8886 5 atoms, 4 bonds, 1 residue, 1 model selected 
    8887 
    8888 > show sel atoms
    8889 
    8890 > style sel stick
    8891 
    8892 Changed 5 atom styles 
    8893 
    8894 > select clear
    8895 
    8896 > select #12/U:28
    8897 
    8898 5 atoms, 4 bonds, 1 residue, 1 model selected 
    8899 
    8900 > select #12/U:28@CB
    8901 
    8902 1 atom, 1 residue, 1 model selected 
    8903 
    8904 > select clear
    8905 
    8906 > select add #12/U:28@CB
    8907 
    8908 1 atom, 1 residue, 1 model selected 
    8909 
    8910 > select add #11/F:2
    8911 
    8912 10 atoms, 8 bonds, 2 residues, 2 models selected 
    8913 Traceback (most recent call last): 
    8914 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8915 line 130, in invoke 
    8916 return self._func(self._name, data) 
    8917 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8918 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8919 self._update_distances() 
    8920 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8921 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8922 label_settings['text'] = fmt % pb.length 
    8923 ValueError: unsupported format character '-' (0x2d) at index 2 
    8924  
    8925 Error processing trigger "changes": 
    8926 ValueError: unsupported format character '-' (0x2d) at index 2 
    8927  
    8928 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8929 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8930 label_settings['text'] = fmt % pb.length 
    8931  
    8932 See log for complete Python traceback. 
    8933  
    8934 Traceback (most recent call last): 
    8935 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8936 line 130, in invoke 
    8937 return self._func(self._name, data) 
    8938 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8939 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8940 self._update_distances() 
    8941 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8942 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8943 label_settings['text'] = fmt % pb.length 
    8944 ValueError: unsupported format character '-' (0x2d) at index 2 
    8945  
    8946 Error processing trigger "changes": 
    8947 ValueError: unsupported format character '-' (0x2d) at index 2 
    8948  
    8949 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8950 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8951 label_settings['text'] = fmt % pb.length 
    8952  
    8953 See log for complete Python traceback. 
    8954  
    8955 Traceback (most recent call last): 
    8956 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8957 line 130, in invoke 
    8958 return self._func(self._name, data) 
    8959 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8960 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8961 self._update_distances() 
    8962 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8963 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8964 label_settings['text'] = fmt % pb.length 
    8965 ValueError: unsupported format character '-' (0x2d) at index 2 
    8966  
    8967 Error processing trigger "changes": 
    8968 ValueError: unsupported format character '-' (0x2d) at index 2 
    8969  
    8970 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8971 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8972 label_settings['text'] = fmt % pb.length 
    8973  
    8974 See log for complete Python traceback. 
    8975  
    8976 Traceback (most recent call last): 
    8977 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8978 line 130, in invoke 
    8979 return self._func(self._name, data) 
    8980 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8981 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    8982 self._update_distances() 
    8983 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8984 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8985 label_settings['text'] = fmt % pb.length 
    8986 ValueError: unsupported format character '-' (0x2d) at index 2 
    8987  
    8988 Error processing trigger "changes": 
    8989 ValueError: unsupported format character '-' (0x2d) at index 2 
    8990  
    8991 File "D:\ChimeraX 1.2.5\bin\lib\site-
    8992 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    8993 label_settings['text'] = fmt % pb.length 
    8994  
    8995 See log for complete Python traceback. 
    8996  
    8997 Traceback (most recent call last): 
    8998 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    8999 line 130, in invoke 
    9000 return self._func(self._name, data) 
    9001 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9002 packages\chimerax\dist_monitor\monitor.py", line 114, in _changes_handler 
    9003 self._update_distances() 
    9004 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9005 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9006 label_settings['text'] = fmt % pb.length 
    9007 ValueError: unsupported format character '-' (0x2d) at index 2 
    9008  
    9009 Error processing trigger "changes": 
    9010 ValueError: unsupported format character '-' (0x2d) at index 2 
    9011  
    9012 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9013 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9014 label_settings['text'] = fmt % pb.length 
    9015  
    9016 See log for complete Python traceback. 
    9017  
    9018 
    9019 > view matrix models
    9020 > #11,0.64832,-0.383,0.65802,-42.611,-0.53375,0.3877,0.75154,2.2962,-0.54295,-0.83845,0.046929,495.23,#12,1,0,0,1.1574,0,1,0,-2.9623,0,0,1,0.50472
    9021 
    9022 > select clear
    9023 
    9024 > select add #11/F:28@CB
    9025 
    9026 1 atom, 1 residue, 1 model selected 
    9027 
    9028 > select add #12/U:28@CB
    9029 
    9030 2 atoms, 2 residues, 3 models selected 
    9031 
    9032 > select clear
    9033 
    9034 > select add #12/U:28@CB
    9035 
    9036 1 atom, 1 residue, 1 model selected 
    9037 
    9038 > select add #11/F:28@CB
    9039 
    9040 2 atoms, 2 residues, 2 models selected 
    9041 
    9042 > ui tool show Distances
    9043 
    9044 Traceback (most recent call last): 
    9045 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
    9046 line 540, in start_tool 
    9047 ti = api._api_caller.start_tool(api, session, self, tool_info) 
    9048 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9049 packages\chimerax\core\toolshed\\__init__.py", line 1265, in start_tool 
    9050 return cls._get_func(api, "start_tool")(session, ti.name) 
    9051 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\\__init__.py",
    9052 line 45, in start_tool 
    9053 return DistanceTool(session, tool_name) 
    9054 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    9055 88, in __init__ 
    9056 self._fill_table() 
    9057 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    9058 150, in _fill_table 
    9059 strings = a1.string(), a2.string(relative_to=a1), fmt % pb.length 
    9060 ValueError: unsupported format character '-' (0x2d) at index 2 
    9061  
    9062 During handling of the above exception, another exception occurred: 
    9063  
    9064 Traceback (most recent call last): 
    9065 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\gui.py", line 1552,
    9066 in <lambda> 
    9067 run(ses, "ui tool show %s" % StringArg.unparse(tool_name))) 
    9068 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    9069 line 36, in run 
    9070 results = command.run(text, log=log, return_json=return_json) 
    9071 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    9072 line 2852, in run 
    9073 result = ci.function(session, **kw_args) 
    9074 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\cmd.py", line 203,
    9075 in ui_tool_show 
    9076 bi.start_tool(session, name) 
    9077 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
    9078 line 545, in start_tool 
    9079 raise ToolshedError( 
    9080 chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Distances
    9081 in bundle ChimeraX-DistUI: 
    9082 unsupported format character '-' (0x2d) at index 2 
    9083  
    9084 chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Distances
    9085 in bundle ChimeraX-DistUI: 
    9086 unsupported format character '-' (0x2d) at index 2 
    9087  
    9088 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\toolshed\info.py",
    9089 line 545, in start_tool 
    9090 raise ToolshedError( 
    9091  
    9092 See log for complete Python traceback. 
    9093  
    9094 
    9095 > ui tool show Distances
    9096 
    9097 > distance #12/U:28@CB #11/F:28@CB
    9098 
    9099 Traceback (most recent call last): 
    9100 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    9101 103, in _create_distance 
    9102 run(self.session, "distance %s %s" % tuple(a.string(style="command") for a in
    9103 sel_atoms)) 
    9104 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    9105 line 36, in run 
    9106 results = command.run(text, log=log, return_json=return_json) 
    9107 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    9108 line 2852, in run 
    9109 result = ci.function(session, **kw_args) 
    9110 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    9111 line 118, in distance 
    9112 session.logger.info(("Distance between %s and %s: " +
    9113 session.pb_dist_monitor.distance_format) 
    9114 ValueError: unsupported format character '-' (0x2d) at index 30 
    9115  
    9116 ValueError: unsupported format character '-' (0x2d) at index 30 
    9117  
    9118 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    9119 line 118, in distance 
    9120 session.logger.info(("Distance between %s and %s: " +
    9121 session.pb_dist_monitor.distance_format) 
    9122  
    9123 See log for complete Python traceback. 
    9124  
    9125 Traceback (most recent call last): 
    9126 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    9127 line 130, in invoke 
    9128 return self._func(self._name, data) 
    9129 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9130 packages\chimerax\dist_monitor\monitor.py", line 110, in _changes_handler 
    9131 self._update_distances(pseudobonds=[pb]) 
    9132 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9133 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9134 label_settings['text'] = fmt % pb.length 
    9135 ValueError: unsupported format character '-' (0x2d) at index 2 
    9136  
    9137 Error processing trigger "changes": 
    9138 ValueError: unsupported format character '-' (0x2d) at index 2 
    9139  
    9140 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9141 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9142 label_settings['text'] = fmt % pb.length 
    9143  
    9144 See log for complete Python traceback. 
    9145  
    9146 
    9147 > distance #12/U:28@CB #11/F:28@CB
    9148 
    9149 Distance already exists; modify distance properties with 'distance style' 
    9150 
    9151 > distance #12/U:28@CB #11/F:28@CB
    9152 
    9153 Distance already exists; modify distance properties with 'distance style' 
    9154 
    9155 > distance #12/U:28@CB #11/F:28@CB
    9156 
    9157 Distance already exists; modify distance properties with 'distance style' 
    9158 
    9159 > distance #12/U:28@CB #11/F:28@CB
    9160 
    9161 Distance already exists; modify distance properties with 'distance style' 
    9162 
    9163 > distance #12/U:28@CB #11/F:28@CB
    9164 
    9165 Distance already exists; modify distance properties with 'distance style' 
    9166 
    9167 > select clear
    9168 
    9169 > select add #12/U:28@CB
    9170 
    9171 1 atom, 1 residue, 1 model selected 
    9172 
    9173 > select clear
    9174 
    9175 > select #12/U:27
    9176 
    9177 9 atoms, 8 bonds, 1 residue, 1 model selected 
    9178 
    9179 > show sel atoms
    9180 
    9181 > style sel sphere
    9182 
    9183 Changed 9 atom styles 
    9184 
    9185 > color sel byhetero
    9186 
    9187 > style sel stick
    9188 
    9189 Changed 9 atom styles 
    9190 
    9191 > style sel stick
    9192 
    9193 Changed 9 atom styles 
    9194 
    9195 > style sel stick
    9196 
    9197 Changed 9 atom styles 
    9198 
    9199 > style sel stick
    9200 
    9201 Changed 9 atom styles 
    9202 
    9203 > select #11/F:27
    9204 
    9205 9 atoms, 8 bonds, 1 residue, 1 model selected 
    9206 
    9207 > show sel atoms
    9208 
    9209 > style sel stick
    9210 
    9211 Changed 9 atom styles 
    9212 
    9213 > color sel byhetero
    9214 
    9215 > color sel byhetero
    9216 
    9217 > select clear
    9218 
    9219 > select add #11/F:27@NZ
    9220 
    9221 1 atom, 1 residue, 1 model selected 
    9222 
    9223 > select add #12/U:27@NZ
    9224 
    9225 2 atoms, 2 residues, 3 models selected 
    9226 
    9227 > distance #11/F:27@NZ #12/U:27@NZ
    9228 
    9229 Traceback (most recent call last): 
    9230 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    9231 103, in _create_distance 
    9232 run(self.session, "distance %s %s" % tuple(a.string(style="command") for a in
    9233 sel_atoms)) 
    9234 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    9235 line 36, in run 
    9236 results = command.run(text, log=log, return_json=return_json) 
    9237 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    9238 line 2852, in run 
    9239 result = ci.function(session, **kw_args) 
    9240 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    9241 line 118, in distance 
    9242 session.logger.info(("Distance between %s and %s: " +
    9243 session.pb_dist_monitor.distance_format) 
    9244 ValueError: unsupported format character '-' (0x2d) at index 30 
    9245  
    9246 ValueError: unsupported format character '-' (0x2d) at index 30 
    9247  
    9248 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    9249 line 118, in distance 
    9250 session.logger.info(("Distance between %s and %s: " +
    9251 session.pb_dist_monitor.distance_format) 
    9252  
    9253 See log for complete Python traceback. 
    9254  
    9255 Traceback (most recent call last): 
    9256 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    9257 line 130, in invoke 
    9258 return self._func(self._name, data) 
    9259 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9260 packages\chimerax\dist_monitor\monitor.py", line 110, in _changes_handler 
    9261 self._update_distances(pseudobonds=[pb]) 
    9262 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9263 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9264 label_settings['text'] = fmt % pb.length 
    9265 ValueError: unsupported format character '-' (0x2d) at index 2 
    9266  
    9267 Error processing trigger "changes": 
    9268 ValueError: unsupported format character '-' (0x2d) at index 2 
    9269  
    9270 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9271 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9272 label_settings['text'] = fmt % pb.length 
    9273  
    9274 See log for complete Python traceback. 
    9275  
    9276 
    9277 > distance #11/F:27@NZ #12/U:27@NZ
    9278 
    9279 Distance already exists; modify distance properties with 'distance style' 
    9280 
    9281 > distance #11/F:27@NZ #12/U:27@NZ
    9282 
    9283 Distance already exists; modify distance properties with 'distance style' 
    9284 
    9285 > distance #11/F:27@NZ #12/U:27@NZ
    9286 
    9287 Distance already exists; modify distance properties with 'distance style' 
    9288 
    9289 > distance #11/F:27@NZ #12/U:27@NZ
    9290 
    9291 Distance already exists; modify distance properties with 'distance style' 
    9292 
    9293 > distance #11/F:27@NZ #12/U:27@NZ
    9294 
    9295 Distance already exists; modify distance properties with 'distance style' 
    9296 
    9297 > distance #11/F:27@NZ #12/U:27@NZ
    9298 
    9299 Distance already exists; modify distance properties with 'distance style' 
    9300 
    9301 > distance #11/F:27@NZ #12/U:27@NZ
    9302 
    9303 Distance already exists; modify distance properties with 'distance style' 
    9304 
    9305 > distance #11/F:27@NZ #12/U:27@NZ
    9306 
    9307 Distance already exists; modify distance properties with 'distance style' 
    9308 
    9309 > distance #11/F:27@NZ #12/U:27@NZ
    9310 
    9311 Distance already exists; modify distance properties with 'distance style' 
    9312 
    9313 > select clear
    9314 
    9315 > select #11/F:28
    9316 
    9317 5 atoms, 4 bonds, 1 residue, 1 model selected 
    9318 
    9319 > select #11/F:27
    9320 
    9321 9 atoms, 8 bonds, 1 residue, 1 model selected 
    9322 
    9323 > select subtract #11/F:27@CB
    9324 
    9325 8 atoms, 8 bonds, 1 residue, 2 models selected 
    9326 
    9327 > select clear
    9328 
    9329 > select add #11/F:27@CB
    9330 
    9331 1 atom, 1 residue, 1 model selected 
    9332 
    9333 > select add #12/U:27@CB
    9334 
    9335 2 atoms, 2 residues, 2 models selected 
    9336 
    9337 > distance #11/F:27@CB #12/U:27@CB
    9338 
    9339 Traceback (most recent call last): 
    9340 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    9341 103, in _create_distance 
    9342 run(self.session, "distance %s %s" % tuple(a.string(style="command") for a in
    9343 sel_atoms)) 
    9344 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    9345 line 36, in run 
    9346 results = command.run(text, log=log, return_json=return_json) 
    9347 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    9348 line 2852, in run 
    9349 result = ci.function(session, **kw_args) 
    9350 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    9351 line 118, in distance 
    9352 session.logger.info(("Distance between %s and %s: " +
    9353 session.pb_dist_monitor.distance_format) 
    9354 ValueError: unsupported format character '-' (0x2d) at index 30 
    9355  
    9356 ValueError: unsupported format character '-' (0x2d) at index 30 
    9357  
    9358 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    9359 line 118, in distance 
    9360 session.logger.info(("Distance between %s and %s: " +
    9361 session.pb_dist_monitor.distance_format) 
    9362  
    9363 See log for complete Python traceback. 
    9364  
    9365 Traceback (most recent call last): 
    9366 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    9367 line 130, in invoke 
    9368 return self._func(self._name, data) 
    9369 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9370 packages\chimerax\dist_monitor\monitor.py", line 110, in _changes_handler 
    9371 self._update_distances(pseudobonds=[pb]) 
    9372 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9373 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9374 label_settings['text'] = fmt % pb.length 
    9375 ValueError: unsupported format character '-' (0x2d) at index 2 
    9376  
    9377 Error processing trigger "changes": 
    9378 ValueError: unsupported format character '-' (0x2d) at index 2 
    9379  
    9380 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9381 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    9382 label_settings['text'] = fmt % pb.length 
    9383  
    9384 See log for complete Python traceback. 
    9385  
    9386 
    9387 > distance #11/F:27@CB #12/U:27@CB
    9388 
    9389 Distance already exists; modify distance properties with 'distance style' 
    9390 
    9391 > distance #11/F:27@CB #12/U:27@CB
    9392 
    9393 Distance already exists; modify distance properties with 'distance style' 
    9394 
    9395 > distance #11/F:27@CB #12/U:27@CB
    9396 
    9397 Distance already exists; modify distance properties with 'distance style' 
    9398 
    9399 > distance #11/F:27@CB #12/U:27@CB
    9400 
    9401 Distance already exists; modify distance properties with 'distance style' 
    9402 
    9403 > distance #11/F:27@CB #12/U:27@CB
    9404 
    9405 Distance already exists; modify distance properties with 'distance style' 
    9406 
    9407 > select clear
    9408 
    9409 > show #!10 models
    9410 
    9411 Traceback (most recent call last): 
    9412 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9413 line 139, in _redraw_timer_callback 
    9414 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9415 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9416 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9417 mouse_pause_tracking 
    9418 self._mouse_pause() 
    9419 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9420 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9421 m.pause(self._mouse_pause_position) 
    9422 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9423 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9424 pu.show_text(p.description(), (x+10,y)) 
    9425 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9426 line 1980, in description 
    9427 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9428 ValueError: unsupported format character '-' (0x2d) at index 2 
    9429  
    9430 ValueError: unsupported format character '-' (0x2d) at index 2 
    9431  
    9432 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9433 line 1980, in description 
    9434 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9435  
    9436 See log for complete Python traceback. 
    9437  
    9438 Traceback (most recent call last): 
    9439 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9440 line 139, in _redraw_timer_callback 
    9441 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9442 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9443 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9444 mouse_pause_tracking 
    9445 self._mouse_pause() 
    9446 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9447 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9448 m.pause(self._mouse_pause_position) 
    9449 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9450 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9451 pu.show_text(p.description(), (x+10,y)) 
    9452 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9453 line 1980, in description 
    9454 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9455 ValueError: unsupported format character '-' (0x2d) at index 2 
    9456  
    9457 ValueError: unsupported format character '-' (0x2d) at index 2 
    9458  
    9459 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9460 line 1980, in description 
    9461 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9462  
    9463 See log for complete Python traceback. 
    9464  
    9465 Traceback (most recent call last): 
    9466 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9467 line 139, in _redraw_timer_callback 
    9468 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9469 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9470 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9471 mouse_pause_tracking 
    9472 self._mouse_pause() 
    9473 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9474 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9475 m.pause(self._mouse_pause_position) 
    9476 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9477 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9478 pu.show_text(p.description(), (x+10,y)) 
    9479 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9480 line 1980, in description 
    9481 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9482 ValueError: unsupported format character '-' (0x2d) at index 2 
    9483  
    9484 ValueError: unsupported format character '-' (0x2d) at index 2 
    9485  
    9486 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9487 line 1980, in description 
    9488 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9489  
    9490 See log for complete Python traceback. 
    9491  
    9492 Traceback (most recent call last): 
    9493 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9494 line 139, in _redraw_timer_callback 
    9495 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9496 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9497 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9498 mouse_pause_tracking 
    9499 self._mouse_pause() 
    9500 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9501 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9502 m.pause(self._mouse_pause_position) 
    9503 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9504 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9505 pu.show_text(p.description(), (x+10,y)) 
    9506 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9507 line 1980, in description 
    9508 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9509 ValueError: unsupported format character '-' (0x2d) at index 2 
    9510  
    9511 ValueError: unsupported format character '-' (0x2d) at index 2 
    9512  
    9513 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9514 line 1980, in description 
    9515 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9516  
    9517 See log for complete Python traceback. 
    9518  
    9519 Traceback (most recent call last): 
    9520 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9521 line 139, in _redraw_timer_callback 
    9522 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9523 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9524 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9525 mouse_pause_tracking 
    9526 self._mouse_pause() 
    9527 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9528 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9529 m.pause(self._mouse_pause_position) 
    9530 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9531 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9532 pu.show_text(p.description(), (x+10,y)) 
    9533 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9534 line 1980, in description 
    9535 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9536 ValueError: unsupported format character '-' (0x2d) at index 2 
    9537  
    9538 ValueError: unsupported format character '-' (0x2d) at index 2 
    9539  
    9540 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9541 line 1980, in description 
    9542 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9543  
    9544 See log for complete Python traceback. 
    9545  
    9546 Traceback (most recent call last): 
    9547 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9548 line 139, in _redraw_timer_callback 
    9549 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9550 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9551 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9552 mouse_pause_tracking 
    9553 self._mouse_pause() 
    9554 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9555 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9556 m.pause(self._mouse_pause_position) 
    9557 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9558 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9559 pu.show_text(p.description(), (x+10,y)) 
    9560 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9561 line 1980, in description 
    9562 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9563 ValueError: unsupported format character '-' (0x2d) at index 2 
    9564  
    9565 ValueError: unsupported format character '-' (0x2d) at index 2 
    9566  
    9567 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9568 line 1980, in description 
    9569 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9570  
    9571 See log for complete Python traceback. 
    9572  
    9573 Traceback (most recent call last): 
    9574 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9575 line 139, in _redraw_timer_callback 
    9576 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9577 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9578 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9579 mouse_pause_tracking 
    9580 self._mouse_pause() 
    9581 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9582 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9583 m.pause(self._mouse_pause_position) 
    9584 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9585 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9586 pu.show_text(p.description(), (x+10,y)) 
    9587 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9588 line 1980, in description 
    9589 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9590 ValueError: unsupported format character '-' (0x2d) at index 2 
    9591  
    9592 ValueError: unsupported format character '-' (0x2d) at index 2 
    9593  
    9594 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9595 line 1980, in description 
    9596 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9597  
    9598 See log for complete Python traceback. 
    9599  
    9600 Traceback (most recent call last): 
    9601 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9602 line 139, in _redraw_timer_callback 
    9603 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9604 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9605 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9606 mouse_pause_tracking 
    9607 self._mouse_pause() 
    9608 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9609 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9610 m.pause(self._mouse_pause_position) 
    9611 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9612 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9613 pu.show_text(p.description(), (x+10,y)) 
    9614 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9615 line 1980, in description 
    9616 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9617 ValueError: unsupported format character '-' (0x2d) at index 2 
    9618  
    9619 ValueError: unsupported format character '-' (0x2d) at index 2 
    9620  
    9621 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9622 line 1980, in description 
    9623 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9624  
    9625 See log for complete Python traceback. 
    9626  
    9627 Traceback (most recent call last): 
    9628 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9629 line 139, in _redraw_timer_callback 
    9630 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9631 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9632 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9633 mouse_pause_tracking 
    9634 self._mouse_pause() 
    9635 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9636 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9637 m.pause(self._mouse_pause_position) 
    9638 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9639 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9640 pu.show_text(p.description(), (x+10,y)) 
    9641 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9642 line 1980, in description 
    9643 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9644 ValueError: unsupported format character '-' (0x2d) at index 2 
    9645  
    9646 ValueError: unsupported format character '-' (0x2d) at index 2 
    9647  
    9648 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9649 line 1980, in description 
    9650 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9651  
    9652 See log for complete Python traceback. 
    9653  
    9654 Traceback (most recent call last): 
    9655 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9656 line 139, in _redraw_timer_callback 
    9657 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9658 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9659 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9660 mouse_pause_tracking 
    9661 self._mouse_pause() 
    9662 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9663 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9664 m.pause(self._mouse_pause_position) 
    9665 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9666 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9667 pu.show_text(p.description(), (x+10,y)) 
    9668 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9669 line 1980, in description 
    9670 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9671 ValueError: unsupported format character '-' (0x2d) at index 2 
    9672  
    9673 ValueError: unsupported format character '-' (0x2d) at index 2 
    9674  
    9675 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9676 line 1980, in description 
    9677 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9678  
    9679 See log for complete Python traceback. 
    9680  
    9681 Traceback (most recent call last): 
    9682 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9683 line 139, in _redraw_timer_callback 
    9684 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9685 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9686 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9687 mouse_pause_tracking 
    9688 self._mouse_pause() 
    9689 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9690 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9691 m.pause(self._mouse_pause_position) 
    9692 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9693 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9694 pu.show_text(p.description(), (x+10,y)) 
    9695 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9696 line 1980, in description 
    9697 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9698 ValueError: unsupported format character '-' (0x2d) at index 2 
    9699  
    9700 ValueError: unsupported format character '-' (0x2d) at index 2 
    9701  
    9702 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9703 line 1980, in description 
    9704 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9705  
    9706 See log for complete Python traceback. 
    9707  
    9708 Traceback (most recent call last): 
    9709 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9710 line 139, in _redraw_timer_callback 
    9711 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9712 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9713 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9714 mouse_pause_tracking 
    9715 self._mouse_pause() 
    9716 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9717 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9718 m.pause(self._mouse_pause_position) 
    9719 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9720 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9721 pu.show_text(p.description(), (x+10,y)) 
    9722 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9723 line 1980, in description 
    9724 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9725 ValueError: unsupported format character '-' (0x2d) at index 2 
    9726  
    9727 ValueError: unsupported format character '-' (0x2d) at index 2 
    9728  
    9729 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9730 line 1980, in description 
    9731 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9732  
    9733 See log for complete Python traceback. 
    9734  
    9735 Traceback (most recent call last): 
    9736 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9737 line 139, in _redraw_timer_callback 
    9738 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9739 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9740 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9741 mouse_pause_tracking 
    9742 self._mouse_pause() 
    9743 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9744 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9745 m.pause(self._mouse_pause_position) 
    9746 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9747 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9748 pu.show_text(p.description(), (x+10,y)) 
    9749 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9750 line 1980, in description 
    9751 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9752 ValueError: unsupported format character '-' (0x2d) at index 2 
    9753  
    9754 ValueError: unsupported format character '-' (0x2d) at index 2 
    9755  
    9756 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9757 line 1980, in description 
    9758 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9759  
    9760 See log for complete Python traceback. 
    9761  
    9762 Traceback (most recent call last): 
    9763 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9764 line 139, in _redraw_timer_callback 
    9765 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9766 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9767 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9768 mouse_pause_tracking 
    9769 self._mouse_pause() 
    9770 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9771 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9772 m.pause(self._mouse_pause_position) 
    9773 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9774 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9775 pu.show_text(p.description(), (x+10,y)) 
    9776 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9777 line 1980, in description 
    9778 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9779 ValueError: unsupported format character '-' (0x2d) at index 2 
    9780  
    9781 ValueError: unsupported format character '-' (0x2d) at index 2 
    9782  
    9783 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9784 line 1980, in description 
    9785 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9786  
    9787 See log for complete Python traceback. 
    9788  
    9789 Traceback (most recent call last): 
    9790 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9791 line 139, in _redraw_timer_callback 
    9792 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9793 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9794 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9795 mouse_pause_tracking 
    9796 self._mouse_pause() 
    9797 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9798 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9799 m.pause(self._mouse_pause_position) 
    9800 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9801 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9802 pu.show_text(p.description(), (x+10,y)) 
    9803 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9804 line 1980, in description 
    9805 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9806 ValueError: unsupported format character '-' (0x2d) at index 2 
    9807  
    9808 ValueError: unsupported format character '-' (0x2d) at index 2 
    9809  
    9810 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9811 line 1980, in description 
    9812 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9813  
    9814 See log for complete Python traceback. 
    9815  
    9816 Traceback (most recent call last): 
    9817 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9818 line 139, in _redraw_timer_callback 
    9819 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9820 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9821 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9822 mouse_pause_tracking 
    9823 self._mouse_pause() 
    9824 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9825 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9826 m.pause(self._mouse_pause_position) 
    9827 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9828 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9829 pu.show_text(p.description(), (x+10,y)) 
    9830 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9831 line 1980, in description 
    9832 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9833 ValueError: unsupported format character '-' (0x2d) at index 2 
    9834  
    9835 ValueError: unsupported format character '-' (0x2d) at index 2 
    9836  
    9837 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9838 line 1980, in description 
    9839 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9840  
    9841 See log for complete Python traceback. 
    9842  
    9843 Traceback (most recent call last): 
    9844 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9845 line 139, in _redraw_timer_callback 
    9846 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9847 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9848 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9849 mouse_pause_tracking 
    9850 self._mouse_pause() 
    9851 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9852 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9853 m.pause(self._mouse_pause_position) 
    9854 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9855 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9856 pu.show_text(p.description(), (x+10,y)) 
    9857 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9858 line 1980, in description 
    9859 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9860 ValueError: unsupported format character '-' (0x2d) at index 2 
    9861  
    9862 ValueError: unsupported format character '-' (0x2d) at index 2 
    9863  
    9864 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9865 line 1980, in description 
    9866 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9867  
    9868 See log for complete Python traceback. 
    9869  
    9870 Traceback (most recent call last): 
    9871 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9872 line 139, in _redraw_timer_callback 
    9873 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9874 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9875 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9876 mouse_pause_tracking 
    9877 self._mouse_pause() 
    9878 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9879 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9880 m.pause(self._mouse_pause_position) 
    9881 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9882 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9883 pu.show_text(p.description(), (x+10,y)) 
    9884 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9885 line 1980, in description 
    9886 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9887 ValueError: unsupported format character '-' (0x2d) at index 2 
    9888  
    9889 ValueError: unsupported format character '-' (0x2d) at index 2 
    9890  
    9891 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9892 line 1980, in description 
    9893 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9894  
    9895 See log for complete Python traceback. 
    9896  
    9897 Traceback (most recent call last): 
    9898 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9899 line 139, in _redraw_timer_callback 
    9900 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9901 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9902 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9903 mouse_pause_tracking 
    9904 self._mouse_pause() 
    9905 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9906 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9907 m.pause(self._mouse_pause_position) 
    9908 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9909 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9910 pu.show_text(p.description(), (x+10,y)) 
    9911 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9912 line 1980, in description 
    9913 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9914 ValueError: unsupported format character '-' (0x2d) at index 2 
    9915  
    9916 ValueError: unsupported format character '-' (0x2d) at index 2 
    9917  
    9918 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9919 line 1980, in description 
    9920 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9921  
    9922 See log for complete Python traceback. 
    9923  
    9924 Traceback (most recent call last): 
    9925 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9926 line 139, in _redraw_timer_callback 
    9927 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9928 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9929 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9930 mouse_pause_tracking 
    9931 self._mouse_pause() 
    9932 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9933 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9934 m.pause(self._mouse_pause_position) 
    9935 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9936 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9937 pu.show_text(p.description(), (x+10,y)) 
    9938 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9939 line 1980, in description 
    9940 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9941 ValueError: unsupported format character '-' (0x2d) at index 2 
    9942  
    9943 ValueError: unsupported format character '-' (0x2d) at index 2 
    9944  
    9945 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9946 line 1980, in description 
    9947 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9948  
    9949 See log for complete Python traceback. 
    9950  
    9951 Traceback (most recent call last): 
    9952 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9953 line 139, in _redraw_timer_callback 
    9954 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9955 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9956 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9957 mouse_pause_tracking 
    9958 self._mouse_pause() 
    9959 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9960 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9961 m.pause(self._mouse_pause_position) 
    9962 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9963 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9964 pu.show_text(p.description(), (x+10,y)) 
    9965 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9966 line 1980, in description 
    9967 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9968 ValueError: unsupported format character '-' (0x2d) at index 2 
    9969  
    9970 ValueError: unsupported format character '-' (0x2d) at index 2 
    9971  
    9972 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9973 line 1980, in description 
    9974 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9975  
    9976 See log for complete Python traceback. 
    9977  
    9978 Traceback (most recent call last): 
    9979 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    9980 line 139, in _redraw_timer_callback 
    9981 self.session.ui.mouse_modes.mouse_pause_tracking() 
    9982 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9983 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    9984 mouse_pause_tracking 
    9985 self._mouse_pause() 
    9986 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9987 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    9988 m.pause(self._mouse_pause_position) 
    9989 File "D:\ChimeraX 1.2.5\bin\lib\site-
    9990 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    9991 pu.show_text(p.description(), (x+10,y)) 
    9992 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    9993 line 1980, in description 
    9994 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    9995 ValueError: unsupported format character '-' (0x2d) at index 2 
    9996  
    9997 ValueError: unsupported format character '-' (0x2d) at index 2 
    9998  
    9999 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10000 line 1980, in description 
    10001 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10002  
    10003 See log for complete Python traceback. 
    10004  
    10005 Traceback (most recent call last): 
    10006 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10007 line 139, in _redraw_timer_callback 
    10008 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10009 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10010 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10011 mouse_pause_tracking 
    10012 self._mouse_pause() 
    10013 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10014 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10015 m.pause(self._mouse_pause_position) 
    10016 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10017 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10018 pu.show_text(p.description(), (x+10,y)) 
    10019 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10020 line 1980, in description 
    10021 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10022 ValueError: unsupported format character '-' (0x2d) at index 2 
    10023  
    10024 ValueError: unsupported format character '-' (0x2d) at index 2 
    10025  
    10026 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10027 line 1980, in description 
    10028 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10029  
    10030 See log for complete Python traceback. 
    10031  
    10032 Traceback (most recent call last): 
    10033 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10034 line 139, in _redraw_timer_callback 
    10035 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10036 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10037 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10038 mouse_pause_tracking 
    10039 self._mouse_pause() 
    10040 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10041 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10042 m.pause(self._mouse_pause_position) 
    10043 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10044 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10045 pu.show_text(p.description(), (x+10,y)) 
    10046 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10047 line 1980, in description 
    10048 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10049 ValueError: unsupported format character '-' (0x2d) at index 2 
    10050  
    10051 ValueError: unsupported format character '-' (0x2d) at index 2 
    10052  
    10053 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10054 line 1980, in description 
    10055 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10056  
    10057 See log for complete Python traceback. 
    10058  
    10059 Traceback (most recent call last): 
    10060 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10061 line 139, in _redraw_timer_callback 
    10062 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10063 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10064 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10065 mouse_pause_tracking 
    10066 self._mouse_pause() 
    10067 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10068 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10069 m.pause(self._mouse_pause_position) 
    10070 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10071 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10072 pu.show_text(p.description(), (x+10,y)) 
    10073 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10074 line 1980, in description 
    10075 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10076 ValueError: unsupported format character '-' (0x2d) at index 2 
    10077  
    10078 ValueError: unsupported format character '-' (0x2d) at index 2 
    10079  
    10080 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10081 line 1980, in description 
    10082 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10083  
    10084 See log for complete Python traceback. 
    10085  
    10086 Traceback (most recent call last): 
    10087 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10088 line 139, in _redraw_timer_callback 
    10089 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10090 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10091 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10092 mouse_pause_tracking 
    10093 self._mouse_pause() 
    10094 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10095 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10096 m.pause(self._mouse_pause_position) 
    10097 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10098 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10099 pu.show_text(p.description(), (x+10,y)) 
    10100 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10101 line 1980, in description 
    10102 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10103 ValueError: unsupported format character '-' (0x2d) at index 2 
    10104  
    10105 ValueError: unsupported format character '-' (0x2d) at index 2 
    10106  
    10107 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10108 line 1980, in description 
    10109 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10110  
    10111 See log for complete Python traceback. 
    10112  
    10113 Traceback (most recent call last): 
    10114 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10115 line 139, in _redraw_timer_callback 
    10116 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10117 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10118 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10119 mouse_pause_tracking 
    10120 self._mouse_pause() 
    10121 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10122 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10123 m.pause(self._mouse_pause_position) 
    10124 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10125 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10126 pu.show_text(p.description(), (x+10,y)) 
    10127 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10128 line 1980, in description 
    10129 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10130 ValueError: unsupported format character '-' (0x2d) at index 2 
    10131  
    10132 ValueError: unsupported format character '-' (0x2d) at index 2 
    10133  
    10134 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10135 line 1980, in description 
    10136 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10137  
    10138 See log for complete Python traceback. 
    10139  
    10140 Traceback (most recent call last): 
    10141 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10142 line 139, in _redraw_timer_callback 
    10143 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10144 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10145 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10146 mouse_pause_tracking 
    10147 self._mouse_pause() 
    10148 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10149 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10150 m.pause(self._mouse_pause_position) 
    10151 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10152 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10153 pu.show_text(p.description(), (x+10,y)) 
    10154 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10155 line 1980, in description 
    10156 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10157 ValueError: unsupported format character '-' (0x2d) at index 2 
    10158  
    10159 ValueError: unsupported format character '-' (0x2d) at index 2 
    10160  
    10161 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10162 line 1980, in description 
    10163 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10164  
    10165 See log for complete Python traceback. 
    10166  
    10167 Traceback (most recent call last): 
    10168 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10169 line 139, in _redraw_timer_callback 
    10170 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10171 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10172 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10173 mouse_pause_tracking 
    10174 self._mouse_pause() 
    10175 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10176 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10177 m.pause(self._mouse_pause_position) 
    10178 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10179 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10180 pu.show_text(p.description(), (x+10,y)) 
    10181 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10182 line 1980, in description 
    10183 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10184 ValueError: unsupported format character '-' (0x2d) at index 2 
    10185  
    10186 ValueError: unsupported format character '-' (0x2d) at index 2 
    10187  
    10188 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10189 line 1980, in description 
    10190 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10191  
    10192 See log for complete Python traceback. 
    10193  
    10194 Traceback (most recent call last): 
    10195 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10196 line 139, in _redraw_timer_callback 
    10197 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10198 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10199 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10200 mouse_pause_tracking 
    10201 self._mouse_pause() 
    10202 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10203 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10204 m.pause(self._mouse_pause_position) 
    10205 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10206 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10207 pu.show_text(p.description(), (x+10,y)) 
    10208 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10209 line 1980, in description 
    10210 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10211 ValueError: unsupported format character '-' (0x2d) at index 2 
    10212  
    10213 ValueError: unsupported format character '-' (0x2d) at index 2 
    10214  
    10215 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10216 line 1980, in description 
    10217 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10218  
    10219 See log for complete Python traceback. 
    10220  
    10221 Traceback (most recent call last): 
    10222 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10223 line 139, in _redraw_timer_callback 
    10224 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10225 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10226 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10227 mouse_pause_tracking 
    10228 self._mouse_pause() 
    10229 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10230 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10231 m.pause(self._mouse_pause_position) 
    10232 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10233 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10234 pu.show_text(p.description(), (x+10,y)) 
    10235 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10236 line 1980, in description 
    10237 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10238 ValueError: unsupported format character '-' (0x2d) at index 2 
    10239  
    10240 ValueError: unsupported format character '-' (0x2d) at index 2 
    10241  
    10242 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10243 line 1980, in description 
    10244 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10245  
    10246 See log for complete Python traceback. 
    10247  
    10248 Traceback (most recent call last): 
    10249 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10250 line 139, in _redraw_timer_callback 
    10251 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10252 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10253 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10254 mouse_pause_tracking 
    10255 self._mouse_pause() 
    10256 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10257 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10258 m.pause(self._mouse_pause_position) 
    10259 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10260 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10261 pu.show_text(p.description(), (x+10,y)) 
    10262 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10263 line 1980, in description 
    10264 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10265 ValueError: unsupported format character '-' (0x2d) at index 2 
    10266  
    10267 ValueError: unsupported format character '-' (0x2d) at index 2 
    10268  
    10269 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10270 line 1980, in description 
    10271 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10272  
    10273 See log for complete Python traceback. 
    10274  
    10275 Traceback (most recent call last): 
    10276 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10277 line 139, in _redraw_timer_callback 
    10278 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10279 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10280 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10281 mouse_pause_tracking 
    10282 self._mouse_pause() 
    10283 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10284 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10285 m.pause(self._mouse_pause_position) 
    10286 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10287 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10288 pu.show_text(p.description(), (x+10,y)) 
    10289 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10290 line 1980, in description 
    10291 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10292 ValueError: unsupported format character '-' (0x2d) at index 2 
    10293  
    10294 ValueError: unsupported format character '-' (0x2d) at index 2 
    10295  
    10296 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10297 line 1980, in description 
    10298 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10299  
    10300 See log for complete Python traceback. 
    10301  
    10302 Traceback (most recent call last): 
    10303 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10304 line 139, in _redraw_timer_callback 
    10305 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10306 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10307 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10308 mouse_pause_tracking 
    10309 self._mouse_pause() 
    10310 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10311 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10312 m.pause(self._mouse_pause_position) 
    10313 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10314 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10315 pu.show_text(p.description(), (x+10,y)) 
    10316 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10317 line 1980, in description 
    10318 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10319 ValueError: unsupported format character '-' (0x2d) at index 2 
    10320  
    10321 ValueError: unsupported format character '-' (0x2d) at index 2 
    10322  
    10323 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10324 line 1980, in description 
    10325 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10326  
    10327 See log for complete Python traceback. 
    10328  
    10329 Traceback (most recent call last): 
    10330 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10331 line 139, in _redraw_timer_callback 
    10332 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10333 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10334 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10335 mouse_pause_tracking 
    10336 self._mouse_pause() 
    10337 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10338 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10339 m.pause(self._mouse_pause_position) 
    10340 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10341 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10342 pu.show_text(p.description(), (x+10,y)) 
    10343 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10344 line 1980, in description 
    10345 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10346 ValueError: unsupported format character '-' (0x2d) at index 2 
    10347  
    10348 ValueError: unsupported format character '-' (0x2d) at index 2 
    10349  
    10350 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10351 line 1980, in description 
    10352 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10353  
    10354 See log for complete Python traceback. 
    10355  
    10356 Traceback (most recent call last): 
    10357 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10358 line 139, in _redraw_timer_callback 
    10359 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10360 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10361 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10362 mouse_pause_tracking 
    10363 self._mouse_pause() 
    10364 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10365 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10366 m.pause(self._mouse_pause_position) 
    10367 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10368 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10369 pu.show_text(p.description(), (x+10,y)) 
    10370 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10371 line 1980, in description 
    10372 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10373 ValueError: unsupported format character '-' (0x2d) at index 2 
    10374  
    10375 ValueError: unsupported format character '-' (0x2d) at index 2 
    10376  
    10377 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10378 line 1980, in description 
    10379 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10380  
    10381 See log for complete Python traceback. 
    10382  
    10383 Traceback (most recent call last): 
    10384 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10385 line 139, in _redraw_timer_callback 
    10386 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10387 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10388 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10389 mouse_pause_tracking 
    10390 self._mouse_pause() 
    10391 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10392 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10393 m.pause(self._mouse_pause_position) 
    10394 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10395 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10396 pu.show_text(p.description(), (x+10,y)) 
    10397 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10398 line 1980, in description 
    10399 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10400 ValueError: unsupported format character '-' (0x2d) at index 2 
    10401  
    10402 ValueError: unsupported format character '-' (0x2d) at index 2 
    10403  
    10404 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10405 line 1980, in description 
    10406 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10407  
    10408 See log for complete Python traceback. 
    10409  
    10410 Traceback (most recent call last): 
    10411 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10412 line 139, in _redraw_timer_callback 
    10413 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10414 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10415 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10416 mouse_pause_tracking 
    10417 self._mouse_pause() 
    10418 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10419 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10420 m.pause(self._mouse_pause_position) 
    10421 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10422 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10423 pu.show_text(p.description(), (x+10,y)) 
    10424 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10425 line 1980, in description 
    10426 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10427 ValueError: unsupported format character '-' (0x2d) at index 2 
    10428  
    10429 ValueError: unsupported format character '-' (0x2d) at index 2 
    10430  
    10431 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10432 line 1980, in description 
    10433 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10434  
    10435 See log for complete Python traceback. 
    10436  
    10437 Traceback (most recent call last): 
    10438 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10439 line 139, in _redraw_timer_callback 
    10440 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10441 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10442 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10443 mouse_pause_tracking 
    10444 self._mouse_pause() 
    10445 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10446 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10447 m.pause(self._mouse_pause_position) 
    10448 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10449 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10450 pu.show_text(p.description(), (x+10,y)) 
    10451 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10452 line 1980, in description 
    10453 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10454 ValueError: unsupported format character '-' (0x2d) at index 2 
    10455  
    10456 ValueError: unsupported format character '-' (0x2d) at index 2 
    10457  
    10458 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10459 line 1980, in description 
    10460 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10461  
    10462 See log for complete Python traceback. 
    10463  
    10464 Traceback (most recent call last): 
    10465 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10466 line 139, in _redraw_timer_callback 
    10467 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10468 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10469 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10470 mouse_pause_tracking 
    10471 self._mouse_pause() 
    10472 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10473 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10474 m.pause(self._mouse_pause_position) 
    10475 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10476 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10477 pu.show_text(p.description(), (x+10,y)) 
    10478 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10479 line 1980, in description 
    10480 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10481 ValueError: unsupported format character '-' (0x2d) at index 2 
    10482  
    10483 ValueError: unsupported format character '-' (0x2d) at index 2 
    10484  
    10485 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10486 line 1980, in description 
    10487 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10488  
    10489 See log for complete Python traceback. 
    10490  
    10491 Traceback (most recent call last): 
    10492 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10493 line 139, in _redraw_timer_callback 
    10494 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10495 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10496 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10497 mouse_pause_tracking 
    10498 self._mouse_pause() 
    10499 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10500 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10501 m.pause(self._mouse_pause_position) 
    10502 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10503 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10504 pu.show_text(p.description(), (x+10,y)) 
    10505 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10506 line 1980, in description 
    10507 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10508 ValueError: unsupported format character '-' (0x2d) at index 2 
    10509  
    10510 ValueError: unsupported format character '-' (0x2d) at index 2 
    10511  
    10512 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10513 line 1980, in description 
    10514 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10515  
    10516 See log for complete Python traceback. 
    10517  
    10518 Traceback (most recent call last): 
    10519 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10520 line 139, in _redraw_timer_callback 
    10521 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10522 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10523 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10524 mouse_pause_tracking 
    10525 self._mouse_pause() 
    10526 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10527 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10528 m.pause(self._mouse_pause_position) 
    10529 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10530 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10531 pu.show_text(p.description(), (x+10,y)) 
    10532 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10533 line 1980, in description 
    10534 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10535 ValueError: unsupported format character '-' (0x2d) at index 2 
    10536  
    10537 ValueError: unsupported format character '-' (0x2d) at index 2 
    10538  
    10539 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10540 line 1980, in description 
    10541 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10542  
    10543 See log for complete Python traceback. 
    10544  
    10545 Traceback (most recent call last): 
    10546 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10547 line 139, in _redraw_timer_callback 
    10548 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10549 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10550 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10551 mouse_pause_tracking 
    10552 self._mouse_pause() 
    10553 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10554 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10555 m.pause(self._mouse_pause_position) 
    10556 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10557 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10558 pu.show_text(p.description(), (x+10,y)) 
    10559 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10560 line 1980, in description 
    10561 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10562 ValueError: unsupported format character '-' (0x2d) at index 2 
    10563  
    10564 ValueError: unsupported format character '-' (0x2d) at index 2 
    10565  
    10566 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10567 line 1980, in description 
    10568 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10569  
    10570 See log for complete Python traceback. 
    10571  
    10572 Traceback (most recent call last): 
    10573 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10574 line 139, in _redraw_timer_callback 
    10575 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10576 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10577 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10578 mouse_pause_tracking 
    10579 self._mouse_pause() 
    10580 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10581 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10582 m.pause(self._mouse_pause_position) 
    10583 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10584 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10585 pu.show_text(p.description(), (x+10,y)) 
    10586 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10587 line 1980, in description 
    10588 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10589 ValueError: unsupported format character '-' (0x2d) at index 2 
    10590  
    10591 ValueError: unsupported format character '-' (0x2d) at index 2 
    10592  
    10593 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10594 line 1980, in description 
    10595 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10596  
    10597 See log for complete Python traceback. 
    10598  
    10599 Traceback (most recent call last): 
    10600 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10601 line 139, in _redraw_timer_callback 
    10602 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10603 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10604 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10605 mouse_pause_tracking 
    10606 self._mouse_pause() 
    10607 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10608 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10609 m.pause(self._mouse_pause_position) 
    10610 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10611 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10612 pu.show_text(p.description(), (x+10,y)) 
    10613 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10614 line 1980, in description 
    10615 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10616 ValueError: unsupported format character '-' (0x2d) at index 2 
    10617  
    10618 ValueError: unsupported format character '-' (0x2d) at index 2 
    10619  
    10620 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10621 line 1980, in description 
    10622 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10623  
    10624 See log for complete Python traceback. 
    10625  
    10626 Traceback (most recent call last): 
    10627 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10628 line 139, in _redraw_timer_callback 
    10629 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10630 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10631 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10632 mouse_pause_tracking 
    10633 self._mouse_pause() 
    10634 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10635 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10636 m.pause(self._mouse_pause_position) 
    10637 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10638 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10639 pu.show_text(p.description(), (x+10,y)) 
    10640 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10641 line 1980, in description 
    10642 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10643 ValueError: unsupported format character '-' (0x2d) at index 2 
    10644  
    10645 ValueError: unsupported format character '-' (0x2d) at index 2 
    10646  
    10647 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10648 line 1980, in description 
    10649 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10650  
    10651 See log for complete Python traceback. 
    10652  
    10653 Traceback (most recent call last): 
    10654 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10655 line 139, in _redraw_timer_callback 
    10656 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10657 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10658 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10659 mouse_pause_tracking 
    10660 self._mouse_pause() 
    10661 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10662 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10663 m.pause(self._mouse_pause_position) 
    10664 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10665 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10666 pu.show_text(p.description(), (x+10,y)) 
    10667 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10668 line 1980, in description 
    10669 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10670 ValueError: unsupported format character '-' (0x2d) at index 2 
    10671  
    10672 ValueError: unsupported format character '-' (0x2d) at index 2 
    10673  
    10674 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10675 line 1980, in description 
    10676 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10677  
    10678 See log for complete Python traceback. 
    10679  
    10680 Traceback (most recent call last): 
    10681 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10682 line 139, in _redraw_timer_callback 
    10683 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10684 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10685 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10686 mouse_pause_tracking 
    10687 self._mouse_pause() 
    10688 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10689 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10690 m.pause(self._mouse_pause_position) 
    10691 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10692 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10693 pu.show_text(p.description(), (x+10,y)) 
    10694 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10695 line 1980, in description 
    10696 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10697 ValueError: unsupported format character '-' (0x2d) at index 2 
    10698  
    10699 ValueError: unsupported format character '-' (0x2d) at index 2 
    10700  
    10701 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10702 line 1980, in description 
    10703 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10704  
    10705 See log for complete Python traceback. 
    10706  
    10707 Traceback (most recent call last): 
    10708 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10709 line 139, in _redraw_timer_callback 
    10710 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10711 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10712 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10713 mouse_pause_tracking 
    10714 self._mouse_pause() 
    10715 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10716 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10717 m.pause(self._mouse_pause_position) 
    10718 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10719 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10720 pu.show_text(p.description(), (x+10,y)) 
    10721 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10722 line 1980, in description 
    10723 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10724 ValueError: unsupported format character '-' (0x2d) at index 2 
    10725  
    10726 ValueError: unsupported format character '-' (0x2d) at index 2 
    10727  
    10728 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10729 line 1980, in description 
    10730 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10731  
    10732 See log for complete Python traceback. 
    10733  
    10734 Traceback (most recent call last): 
    10735 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10736 line 139, in _redraw_timer_callback 
    10737 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10738 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10739 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10740 mouse_pause_tracking 
    10741 self._mouse_pause() 
    10742 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10743 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10744 m.pause(self._mouse_pause_position) 
    10745 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10746 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10747 pu.show_text(p.description(), (x+10,y)) 
    10748 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10749 line 1980, in description 
    10750 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10751 ValueError: unsupported format character '-' (0x2d) at index 2 
    10752  
    10753 ValueError: unsupported format character '-' (0x2d) at index 2 
    10754  
    10755 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10756 line 1980, in description 
    10757 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10758  
    10759 See log for complete Python traceback. 
    10760  
    10761 Traceback (most recent call last): 
    10762 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10763 line 139, in _redraw_timer_callback 
    10764 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10765 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10766 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10767 mouse_pause_tracking 
    10768 self._mouse_pause() 
    10769 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10770 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10771 m.pause(self._mouse_pause_position) 
    10772 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10773 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10774 pu.show_text(p.description(), (x+10,y)) 
    10775 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10776 line 1980, in description 
    10777 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10778 ValueError: unsupported format character '-' (0x2d) at index 2 
    10779  
    10780 ValueError: unsupported format character '-' (0x2d) at index 2 
    10781  
    10782 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10783 line 1980, in description 
    10784 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10785  
    10786 See log for complete Python traceback. 
    10787  
    10788 Traceback (most recent call last): 
    10789 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10790 line 139, in _redraw_timer_callback 
    10791 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10792 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10793 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10794 mouse_pause_tracking 
    10795 self._mouse_pause() 
    10796 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10797 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10798 m.pause(self._mouse_pause_position) 
    10799 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10800 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10801 pu.show_text(p.description(), (x+10,y)) 
    10802 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10803 line 1980, in description 
    10804 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10805 ValueError: unsupported format character '-' (0x2d) at index 2 
    10806  
    10807 ValueError: unsupported format character '-' (0x2d) at index 2 
    10808  
    10809 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10810 line 1980, in description 
    10811 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10812  
    10813 See log for complete Python traceback. 
    10814  
    10815 Traceback (most recent call last): 
    10816 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10817 line 139, in _redraw_timer_callback 
    10818 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10819 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10820 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10821 mouse_pause_tracking 
    10822 self._mouse_pause() 
    10823 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10824 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10825 m.pause(self._mouse_pause_position) 
    10826 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10827 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10828 pu.show_text(p.description(), (x+10,y)) 
    10829 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10830 line 1980, in description 
    10831 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10832 ValueError: unsupported format character '-' (0x2d) at index 2 
    10833  
    10834 ValueError: unsupported format character '-' (0x2d) at index 2 
    10835  
    10836 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10837 line 1980, in description 
    10838 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10839  
    10840 See log for complete Python traceback. 
    10841  
    10842 Traceback (most recent call last): 
    10843 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10844 line 139, in _redraw_timer_callback 
    10845 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10846 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10847 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10848 mouse_pause_tracking 
    10849 self._mouse_pause() 
    10850 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10851 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10852 m.pause(self._mouse_pause_position) 
    10853 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10854 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10855 pu.show_text(p.description(), (x+10,y)) 
    10856 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10857 line 1980, in description 
    10858 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10859 ValueError: unsupported format character '-' (0x2d) at index 2 
    10860  
    10861 ValueError: unsupported format character '-' (0x2d) at index 2 
    10862  
    10863 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10864 line 1980, in description 
    10865 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10866  
    10867 See log for complete Python traceback. 
    10868  
    10869 Traceback (most recent call last): 
    10870 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10871 line 139, in _redraw_timer_callback 
    10872 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10873 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10874 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10875 mouse_pause_tracking 
    10876 self._mouse_pause() 
    10877 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10878 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10879 m.pause(self._mouse_pause_position) 
    10880 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10881 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10882 pu.show_text(p.description(), (x+10,y)) 
    10883 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10884 line 1980, in description 
    10885 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10886 ValueError: unsupported format character '-' (0x2d) at index 2 
    10887  
    10888 ValueError: unsupported format character '-' (0x2d) at index 2 
    10889  
    10890 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10891 line 1980, in description 
    10892 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10893  
    10894 See log for complete Python traceback. 
    10895  
    10896 Traceback (most recent call last): 
    10897 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10898 line 139, in _redraw_timer_callback 
    10899 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10900 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10901 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10902 mouse_pause_tracking 
    10903 self._mouse_pause() 
    10904 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10905 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10906 m.pause(self._mouse_pause_position) 
    10907 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10908 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10909 pu.show_text(p.description(), (x+10,y)) 
    10910 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10911 line 1980, in description 
    10912 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10913 ValueError: unsupported format character '-' (0x2d) at index 2 
    10914  
    10915 ValueError: unsupported format character '-' (0x2d) at index 2 
    10916  
    10917 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10918 line 1980, in description 
    10919 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10920  
    10921 See log for complete Python traceback. 
    10922  
    10923 Traceback (most recent call last): 
    10924 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10925 line 139, in _redraw_timer_callback 
    10926 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10927 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10928 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10929 mouse_pause_tracking 
    10930 self._mouse_pause() 
    10931 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10932 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10933 m.pause(self._mouse_pause_position) 
    10934 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10935 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10936 pu.show_text(p.description(), (x+10,y)) 
    10937 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10938 line 1980, in description 
    10939 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10940 ValueError: unsupported format character '-' (0x2d) at index 2 
    10941  
    10942 ValueError: unsupported format character '-' (0x2d) at index 2 
    10943  
    10944 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10945 line 1980, in description 
    10946 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10947  
    10948 See log for complete Python traceback. 
    10949  
    10950 Traceback (most recent call last): 
    10951 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10952 line 139, in _redraw_timer_callback 
    10953 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10954 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10955 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10956 mouse_pause_tracking 
    10957 self._mouse_pause() 
    10958 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10959 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10960 m.pause(self._mouse_pause_position) 
    10961 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10962 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10963 pu.show_text(p.description(), (x+10,y)) 
    10964 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10965 line 1980, in description 
    10966 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10967 ValueError: unsupported format character '-' (0x2d) at index 2 
    10968  
    10969 ValueError: unsupported format character '-' (0x2d) at index 2 
    10970  
    10971 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10972 line 1980, in description 
    10973 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10974  
    10975 See log for complete Python traceback. 
    10976  
    10977 Traceback (most recent call last): 
    10978 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    10979 line 139, in _redraw_timer_callback 
    10980 self.session.ui.mouse_modes.mouse_pause_tracking() 
    10981 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10982 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    10983 mouse_pause_tracking 
    10984 self._mouse_pause() 
    10985 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10986 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    10987 m.pause(self._mouse_pause_position) 
    10988 File "D:\ChimeraX 1.2.5\bin\lib\site-
    10989 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    10990 pu.show_text(p.description(), (x+10,y)) 
    10991 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10992 line 1980, in description 
    10993 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    10994 ValueError: unsupported format character '-' (0x2d) at index 2 
    10995  
    10996 ValueError: unsupported format character '-' (0x2d) at index 2 
    10997  
    10998 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    10999 line 1980, in description 
    11000 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11001  
    11002 See log for complete Python traceback. 
    11003  
    11004 Traceback (most recent call last): 
    11005 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11006 line 139, in _redraw_timer_callback 
    11007 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11008 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11009 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11010 mouse_pause_tracking 
    11011 self._mouse_pause() 
    11012 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11013 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11014 m.pause(self._mouse_pause_position) 
    11015 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11016 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11017 pu.show_text(p.description(), (x+10,y)) 
    11018 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11019 line 1980, in description 
    11020 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11021 ValueError: unsupported format character '-' (0x2d) at index 2 
    11022  
    11023 ValueError: unsupported format character '-' (0x2d) at index 2 
    11024  
    11025 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11026 line 1980, in description 
    11027 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11028  
    11029 See log for complete Python traceback. 
    11030  
    11031 Traceback (most recent call last): 
    11032 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11033 line 139, in _redraw_timer_callback 
    11034 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11035 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11036 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11037 mouse_pause_tracking 
    11038 self._mouse_pause() 
    11039 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11040 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11041 m.pause(self._mouse_pause_position) 
    11042 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11043 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11044 pu.show_text(p.description(), (x+10,y)) 
    11045 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11046 line 1980, in description 
    11047 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11048 ValueError: unsupported format character '-' (0x2d) at index 2 
    11049  
    11050 ValueError: unsupported format character '-' (0x2d) at index 2 
    11051  
    11052 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11053 line 1980, in description 
    11054 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11055  
    11056 See log for complete Python traceback. 
    11057  
    11058 Traceback (most recent call last): 
    11059 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11060 line 139, in _redraw_timer_callback 
    11061 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11062 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11063 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11064 mouse_pause_tracking 
    11065 self._mouse_pause() 
    11066 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11067 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11068 m.pause(self._mouse_pause_position) 
    11069 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11070 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11071 pu.show_text(p.description(), (x+10,y)) 
    11072 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11073 line 1980, in description 
    11074 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11075 ValueError: unsupported format character '-' (0x2d) at index 2 
    11076  
    11077 ValueError: unsupported format character '-' (0x2d) at index 2 
    11078  
    11079 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11080 line 1980, in description 
    11081 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11082  
    11083 See log for complete Python traceback. 
    11084  
    11085 Traceback (most recent call last): 
    11086 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11087 line 139, in _redraw_timer_callback 
    11088 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11089 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11090 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11091 mouse_pause_tracking 
    11092 self._mouse_pause() 
    11093 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11094 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11095 m.pause(self._mouse_pause_position) 
    11096 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11097 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11098 pu.show_text(p.description(), (x+10,y)) 
    11099 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11100 line 1980, in description 
    11101 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11102 ValueError: unsupported format character '-' (0x2d) at index 2 
    11103  
    11104 ValueError: unsupported format character '-' (0x2d) at index 2 
    11105  
    11106 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11107 line 1980, in description 
    11108 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11109  
    11110 See log for complete Python traceback. 
    11111  
    11112 Traceback (most recent call last): 
    11113 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11114 line 139, in _redraw_timer_callback 
    11115 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11116 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11117 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11118 mouse_pause_tracking 
    11119 self._mouse_pause() 
    11120 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11121 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11122 m.pause(self._mouse_pause_position) 
    11123 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11124 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11125 pu.show_text(p.description(), (x+10,y)) 
    11126 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11127 line 1980, in description 
    11128 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11129 ValueError: unsupported format character '-' (0x2d) at index 2 
    11130  
    11131 ValueError: unsupported format character '-' (0x2d) at index 2 
    11132  
    11133 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11134 line 1980, in description 
    11135 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11136  
    11137 See log for complete Python traceback. 
    11138  
    11139 Traceback (most recent call last): 
    11140 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11141 line 139, in _redraw_timer_callback 
    11142 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11143 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11144 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11145 mouse_pause_tracking 
    11146 self._mouse_pause() 
    11147 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11148 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11149 m.pause(self._mouse_pause_position) 
    11150 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11151 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11152 pu.show_text(p.description(), (x+10,y)) 
    11153 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11154 line 1980, in description 
    11155 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11156 ValueError: unsupported format character '-' (0x2d) at index 2 
    11157  
    11158 ValueError: unsupported format character '-' (0x2d) at index 2 
    11159  
    11160 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11161 line 1980, in description 
    11162 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11163  
    11164 See log for complete Python traceback. 
    11165  
    11166 Traceback (most recent call last): 
    11167 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11168 line 139, in _redraw_timer_callback 
    11169 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11170 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11171 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11172 mouse_pause_tracking 
    11173 self._mouse_pause() 
    11174 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11175 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11176 m.pause(self._mouse_pause_position) 
    11177 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11178 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11179 pu.show_text(p.description(), (x+10,y)) 
    11180 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11181 line 1980, in description 
    11182 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11183 ValueError: unsupported format character '-' (0x2d) at index 2 
    11184  
    11185 ValueError: unsupported format character '-' (0x2d) at index 2 
    11186  
    11187 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11188 line 1980, in description 
    11189 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11190  
    11191 See log for complete Python traceback. 
    11192  
    11193 Traceback (most recent call last): 
    11194 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11195 line 139, in _redraw_timer_callback 
    11196 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11197 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11198 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11199 mouse_pause_tracking 
    11200 self._mouse_pause() 
    11201 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11202 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11203 m.pause(self._mouse_pause_position) 
    11204 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11205 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11206 pu.show_text(p.description(), (x+10,y)) 
    11207 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11208 line 1980, in description 
    11209 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11210 ValueError: unsupported format character '-' (0x2d) at index 2 
    11211  
    11212 ValueError: unsupported format character '-' (0x2d) at index 2 
    11213  
    11214 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11215 line 1980, in description 
    11216 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11217  
    11218 See log for complete Python traceback. 
    11219  
    11220 Traceback (most recent call last): 
    11221 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11222 line 139, in _redraw_timer_callback 
    11223 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11224 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11225 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11226 mouse_pause_tracking 
    11227 self._mouse_pause() 
    11228 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11229 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11230 m.pause(self._mouse_pause_position) 
    11231 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11232 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11233 pu.show_text(p.description(), (x+10,y)) 
    11234 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11235 line 1980, in description 
    11236 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11237 ValueError: unsupported format character '-' (0x2d) at index 2 
    11238  
    11239 ValueError: unsupported format character '-' (0x2d) at index 2 
    11240  
    11241 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11242 line 1980, in description 
    11243 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11244  
    11245 See log for complete Python traceback. 
    11246  
    11247 Traceback (most recent call last): 
    11248 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11249 line 139, in _redraw_timer_callback 
    11250 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11251 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11252 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11253 mouse_pause_tracking 
    11254 self._mouse_pause() 
    11255 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11256 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11257 m.pause(self._mouse_pause_position) 
    11258 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11259 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11260 pu.show_text(p.description(), (x+10,y)) 
    11261 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11262 line 1980, in description 
    11263 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11264 ValueError: unsupported format character '-' (0x2d) at index 2 
    11265  
    11266 ValueError: unsupported format character '-' (0x2d) at index 2 
    11267  
    11268 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11269 line 1980, in description 
    11270 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11271  
    11272 See log for complete Python traceback. 
    11273  
    11274 Traceback (most recent call last): 
    11275 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11276 line 139, in _redraw_timer_callback 
    11277 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11278 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11279 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11280 mouse_pause_tracking 
    11281 self._mouse_pause() 
    11282 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11283 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11284 m.pause(self._mouse_pause_position) 
    11285 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11286 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11287 pu.show_text(p.description(), (x+10,y)) 
    11288 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11289 line 1980, in description 
    11290 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11291 ValueError: unsupported format character '-' (0x2d) at index 2 
    11292  
    11293 ValueError: unsupported format character '-' (0x2d) at index 2 
    11294  
    11295 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11296 line 1980, in description 
    11297 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11298  
    11299 See log for complete Python traceback. 
    11300  
    11301 Traceback (most recent call last): 
    11302 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11303 line 139, in _redraw_timer_callback 
    11304 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11305 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11306 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11307 mouse_pause_tracking 
    11308 self._mouse_pause() 
    11309 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11310 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11311 m.pause(self._mouse_pause_position) 
    11312 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11313 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11314 pu.show_text(p.description(), (x+10,y)) 
    11315 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11316 line 1980, in description 
    11317 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11318 ValueError: unsupported format character '-' (0x2d) at index 2 
    11319  
    11320 ValueError: unsupported format character '-' (0x2d) at index 2 
    11321  
    11322 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11323 line 1980, in description 
    11324 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11325  
    11326 See log for complete Python traceback. 
    11327  
    11328 Traceback (most recent call last): 
    11329 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11330 line 139, in _redraw_timer_callback 
    11331 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11332 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11333 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11334 mouse_pause_tracking 
    11335 self._mouse_pause() 
    11336 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11337 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11338 m.pause(self._mouse_pause_position) 
    11339 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11340 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11341 pu.show_text(p.description(), (x+10,y)) 
    11342 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11343 line 1980, in description 
    11344 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11345 ValueError: unsupported format character '-' (0x2d) at index 2 
    11346  
    11347 ValueError: unsupported format character '-' (0x2d) at index 2 
    11348  
    11349 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11350 line 1980, in description 
    11351 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11352  
    11353 See log for complete Python traceback. 
    11354  
    11355 Traceback (most recent call last): 
    11356 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11357 line 139, in _redraw_timer_callback 
    11358 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11359 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11360 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11361 mouse_pause_tracking 
    11362 self._mouse_pause() 
    11363 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11364 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11365 m.pause(self._mouse_pause_position) 
    11366 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11367 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11368 pu.show_text(p.description(), (x+10,y)) 
    11369 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11370 line 1980, in description 
    11371 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11372 ValueError: unsupported format character '-' (0x2d) at index 2 
    11373  
    11374 ValueError: unsupported format character '-' (0x2d) at index 2 
    11375  
    11376 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11377 line 1980, in description 
    11378 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11379  
    11380 See log for complete Python traceback. 
    11381  
    11382 Traceback (most recent call last): 
    11383 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11384 line 139, in _redraw_timer_callback 
    11385 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11386 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11387 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11388 mouse_pause_tracking 
    11389 self._mouse_pause() 
    11390 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11391 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11392 m.pause(self._mouse_pause_position) 
    11393 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11394 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11395 pu.show_text(p.description(), (x+10,y)) 
    11396 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11397 line 1980, in description 
    11398 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11399 ValueError: unsupported format character '-' (0x2d) at index 2 
    11400  
    11401 ValueError: unsupported format character '-' (0x2d) at index 2 
    11402  
    11403 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11404 line 1980, in description 
    11405 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11406  
    11407 See log for complete Python traceback. 
    11408  
    11409 Traceback (most recent call last): 
    11410 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11411 line 139, in _redraw_timer_callback 
    11412 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11413 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11414 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11415 mouse_pause_tracking 
    11416 self._mouse_pause() 
    11417 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11418 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11419 m.pause(self._mouse_pause_position) 
    11420 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11421 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11422 pu.show_text(p.description(), (x+10,y)) 
    11423 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11424 line 1980, in description 
    11425 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11426 ValueError: unsupported format character '-' (0x2d) at index 2 
    11427  
    11428 ValueError: unsupported format character '-' (0x2d) at index 2 
    11429  
    11430 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11431 line 1980, in description 
    11432 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11433  
    11434 See log for complete Python traceback. 
    11435  
    11436 Traceback (most recent call last): 
    11437 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11438 line 139, in _redraw_timer_callback 
    11439 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11440 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11441 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11442 mouse_pause_tracking 
    11443 self._mouse_pause() 
    11444 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11445 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11446 m.pause(self._mouse_pause_position) 
    11447 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11448 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11449 pu.show_text(p.description(), (x+10,y)) 
    11450 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11451 line 1980, in description 
    11452 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11453 ValueError: unsupported format character '-' (0x2d) at index 2 
    11454  
    11455 ValueError: unsupported format character '-' (0x2d) at index 2 
    11456  
    11457 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11458 line 1980, in description 
    11459 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11460  
    11461 See log for complete Python traceback. 
    11462  
    11463 Traceback (most recent call last): 
    11464 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11465 line 139, in _redraw_timer_callback 
    11466 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11467 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11468 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11469 mouse_pause_tracking 
    11470 self._mouse_pause() 
    11471 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11472 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11473 m.pause(self._mouse_pause_position) 
    11474 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11475 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11476 pu.show_text(p.description(), (x+10,y)) 
    11477 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11478 line 1980, in description 
    11479 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11480 ValueError: unsupported format character '-' (0x2d) at index 2 
    11481  
    11482 ValueError: unsupported format character '-' (0x2d) at index 2 
    11483  
    11484 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11485 line 1980, in description 
    11486 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11487  
    11488 See log for complete Python traceback. 
    11489  
    11490 Traceback (most recent call last): 
    11491 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11492 line 139, in _redraw_timer_callback 
    11493 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11494 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11495 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11496 mouse_pause_tracking 
    11497 self._mouse_pause() 
    11498 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11499 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11500 m.pause(self._mouse_pause_position) 
    11501 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11502 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11503 pu.show_text(p.description(), (x+10,y)) 
    11504 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11505 line 1980, in description 
    11506 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11507 ValueError: unsupported format character '-' (0x2d) at index 2 
    11508  
    11509 ValueError: unsupported format character '-' (0x2d) at index 2 
    11510  
    11511 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11512 line 1980, in description 
    11513 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11514  
    11515 See log for complete Python traceback. 
    11516  
    11517 Traceback (most recent call last): 
    11518 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11519 line 139, in _redraw_timer_callback 
    11520 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11521 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11522 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11523 mouse_pause_tracking 
    11524 self._mouse_pause() 
    11525 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11526 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11527 m.pause(self._mouse_pause_position) 
    11528 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11529 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11530 pu.show_text(p.description(), (x+10,y)) 
    11531 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11532 line 1980, in description 
    11533 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11534 ValueError: unsupported format character '-' (0x2d) at index 2 
    11535  
    11536 ValueError: unsupported format character '-' (0x2d) at index 2 
    11537  
    11538 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11539 line 1980, in description 
    11540 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11541  
    11542 See log for complete Python traceback. 
    11543  
    11544 Traceback (most recent call last): 
    11545 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11546 line 139, in _redraw_timer_callback 
    11547 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11548 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11549 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11550 mouse_pause_tracking 
    11551 self._mouse_pause() 
    11552 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11553 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11554 m.pause(self._mouse_pause_position) 
    11555 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11556 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11557 pu.show_text(p.description(), (x+10,y)) 
    11558 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11559 line 1980, in description 
    11560 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11561 ValueError: unsupported format character '-' (0x2d) at index 2 
    11562  
    11563 ValueError: unsupported format character '-' (0x2d) at index 2 
    11564  
    11565 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11566 line 1980, in description 
    11567 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11568  
    11569 See log for complete Python traceback. 
    11570  
    11571 Traceback (most recent call last): 
    11572 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11573 line 139, in _redraw_timer_callback 
    11574 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11575 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11576 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11577 mouse_pause_tracking 
    11578 self._mouse_pause() 
    11579 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11580 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11581 m.pause(self._mouse_pause_position) 
    11582 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11583 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11584 pu.show_text(p.description(), (x+10,y)) 
    11585 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11586 line 1980, in description 
    11587 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11588 ValueError: unsupported format character '-' (0x2d) at index 2 
    11589  
    11590 ValueError: unsupported format character '-' (0x2d) at index 2 
    11591  
    11592 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11593 line 1980, in description 
    11594 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11595  
    11596 See log for complete Python traceback. 
    11597  
    11598 Traceback (most recent call last): 
    11599 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11600 line 139, in _redraw_timer_callback 
    11601 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11602 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11603 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11604 mouse_pause_tracking 
    11605 self._mouse_pause() 
    11606 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11607 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11608 m.pause(self._mouse_pause_position) 
    11609 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11610 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11611 pu.show_text(p.description(), (x+10,y)) 
    11612 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11613 line 1980, in description 
    11614 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11615 ValueError: unsupported format character '-' (0x2d) at index 2 
    11616  
    11617 ValueError: unsupported format character '-' (0x2d) at index 2 
    11618  
    11619 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11620 line 1980, in description 
    11621 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11622  
    11623 See log for complete Python traceback. 
    11624  
    11625 Traceback (most recent call last): 
    11626 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11627 line 139, in _redraw_timer_callback 
    11628 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11629 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11630 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11631 mouse_pause_tracking 
    11632 self._mouse_pause() 
    11633 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11634 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11635 m.pause(self._mouse_pause_position) 
    11636 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11637 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11638 pu.show_text(p.description(), (x+10,y)) 
    11639 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11640 line 1980, in description 
    11641 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11642 ValueError: unsupported format character '-' (0x2d) at index 2 
    11643  
    11644 ValueError: unsupported format character '-' (0x2d) at index 2 
    11645  
    11646 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11647 line 1980, in description 
    11648 return str(self.pbond) + " " + dist_fmt % self.pbond.length 
    11649  
    11650 See log for complete Python traceback. 
    11651  
    11652 
    11653 > close #10
    11654 
    11655 Traceback (most recent call last): 
    11656 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11657 line 139, in _redraw_timer_callback 
    11658 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11659 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11660 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11661 mouse_pause_tracking 
    11662 self._mouse_pause() 
    11663 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11664 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11665 m.pause(self._mouse_pause_position) 
    11666 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11667 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11668 pu.show_text(p.description(), (x+10,y)) 
    11669 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11670 line 1926, in description 
    11671 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11672 ValueError: unsupported format character '-' (0x2d) at index 2 
    11673  
    11674 ValueError: unsupported format character '-' (0x2d) at index 2 
    11675  
    11676 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11677 line 1926, in description 
    11678 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11679  
    11680 See log for complete Python traceback. 
    11681  
    11682 Traceback (most recent call last): 
    11683 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11684 line 139, in _redraw_timer_callback 
    11685 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11686 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11687 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11688 mouse_pause_tracking 
    11689 self._mouse_pause() 
    11690 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11691 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11692 m.pause(self._mouse_pause_position) 
    11693 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11694 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11695 pu.show_text(p.description(), (x+10,y)) 
    11696 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11697 line 1926, in description 
    11698 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11699 ValueError: unsupported format character '-' (0x2d) at index 2 
    11700  
    11701 ValueError: unsupported format character '-' (0x2d) at index 2 
    11702  
    11703 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11704 line 1926, in description 
    11705 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11706  
    11707 See log for complete Python traceback. 
    11708  
    11709 Traceback (most recent call last): 
    11710 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11711 line 139, in _redraw_timer_callback 
    11712 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11713 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11714 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11715 mouse_pause_tracking 
    11716 self._mouse_pause() 
    11717 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11718 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11719 m.pause(self._mouse_pause_position) 
    11720 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11721 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11722 pu.show_text(p.description(), (x+10,y)) 
    11723 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11724 line 1926, in description 
    11725 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11726 ValueError: unsupported format character '-' (0x2d) at index 2 
    11727  
    11728 ValueError: unsupported format character '-' (0x2d) at index 2 
    11729  
    11730 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11731 line 1926, in description 
    11732 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11733  
    11734 See log for complete Python traceback. 
    11735  
    11736 Traceback (most recent call last): 
    11737 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11738 line 139, in _redraw_timer_callback 
    11739 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11740 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11741 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11742 mouse_pause_tracking 
    11743 self._mouse_pause() 
    11744 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11745 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11746 m.pause(self._mouse_pause_position) 
    11747 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11748 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11749 pu.show_text(p.description(), (x+10,y)) 
    11750 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11751 line 1926, in description 
    11752 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11753 ValueError: unsupported format character '-' (0x2d) at index 2 
    11754  
    11755 ValueError: unsupported format character '-' (0x2d) at index 2 
    11756  
    11757 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11758 line 1926, in description 
    11759 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11760  
    11761 See log for complete Python traceback. 
    11762  
    11763 Traceback (most recent call last): 
    11764 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11765 line 139, in _redraw_timer_callback 
    11766 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11767 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11768 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11769 mouse_pause_tracking 
    11770 self._mouse_pause() 
    11771 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11772 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11773 m.pause(self._mouse_pause_position) 
    11774 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11775 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11776 pu.show_text(p.description(), (x+10,y)) 
    11777 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11778 line 1926, in description 
    11779 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11780 ValueError: unsupported format character '-' (0x2d) at index 2 
    11781  
    11782 ValueError: unsupported format character '-' (0x2d) at index 2 
    11783  
    11784 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11785 line 1926, in description 
    11786 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11787  
    11788 See log for complete Python traceback. 
    11789  
    11790 Traceback (most recent call last): 
    11791 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11792 line 139, in _redraw_timer_callback 
    11793 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11794 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11795 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11796 mouse_pause_tracking 
    11797 self._mouse_pause() 
    11798 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11799 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11800 m.pause(self._mouse_pause_position) 
    11801 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11802 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11803 pu.show_text(p.description(), (x+10,y)) 
    11804 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11805 line 1926, in description 
    11806 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11807 ValueError: unsupported format character '-' (0x2d) at index 2 
    11808  
    11809 ValueError: unsupported format character '-' (0x2d) at index 2 
    11810  
    11811 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11812 line 1926, in description 
    11813 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11814  
    11815 See log for complete Python traceback. 
    11816  
    11817 Traceback (most recent call last): 
    11818 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11819 line 139, in _redraw_timer_callback 
    11820 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11821 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11822 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11823 mouse_pause_tracking 
    11824 self._mouse_pause() 
    11825 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11826 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11827 m.pause(self._mouse_pause_position) 
    11828 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11829 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11830 pu.show_text(p.description(), (x+10,y)) 
    11831 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11832 line 1926, in description 
    11833 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11834 ValueError: unsupported format character '-' (0x2d) at index 2 
    11835  
    11836 ValueError: unsupported format character '-' (0x2d) at index 2 
    11837  
    11838 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11839 line 1926, in description 
    11840 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11841  
    11842 See log for complete Python traceback. 
    11843  
    11844 Traceback (most recent call last): 
    11845 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11846 line 139, in _redraw_timer_callback 
    11847 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11848 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11849 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11850 mouse_pause_tracking 
    11851 self._mouse_pause() 
    11852 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11853 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11854 m.pause(self._mouse_pause_position) 
    11855 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11856 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11857 pu.show_text(p.description(), (x+10,y)) 
    11858 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11859 line 1926, in description 
    11860 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11861 ValueError: unsupported format character '-' (0x2d) at index 2 
    11862  
    11863 ValueError: unsupported format character '-' (0x2d) at index 2 
    11864  
    11865 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11866 line 1926, in description 
    11867 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11868  
    11869 See log for complete Python traceback. 
    11870  
    11871 Traceback (most recent call last): 
    11872 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11873 line 139, in _redraw_timer_callback 
    11874 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11875 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11876 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11877 mouse_pause_tracking 
    11878 self._mouse_pause() 
    11879 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11880 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11881 m.pause(self._mouse_pause_position) 
    11882 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11883 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11884 pu.show_text(p.description(), (x+10,y)) 
    11885 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11886 line 1926, in description 
    11887 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11888 ValueError: unsupported format character '-' (0x2d) at index 2 
    11889  
    11890 ValueError: unsupported format character '-' (0x2d) at index 2 
    11891  
    11892 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11893 line 1926, in description 
    11894 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11895  
    11896 See log for complete Python traceback. 
    11897  
    11898 Traceback (most recent call last): 
    11899 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11900 line 139, in _redraw_timer_callback 
    11901 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11902 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11903 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11904 mouse_pause_tracking 
    11905 self._mouse_pause() 
    11906 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11907 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11908 m.pause(self._mouse_pause_position) 
    11909 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11910 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11911 pu.show_text(p.description(), (x+10,y)) 
    11912 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11913 line 1926, in description 
    11914 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11915 ValueError: unsupported format character '-' (0x2d) at index 2 
    11916  
    11917 ValueError: unsupported format character '-' (0x2d) at index 2 
    11918  
    11919 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11920 line 1926, in description 
    11921 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11922  
    11923 See log for complete Python traceback. 
    11924  
    11925 Traceback (most recent call last): 
    11926 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11927 line 139, in _redraw_timer_callback 
    11928 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11929 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11930 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11931 mouse_pause_tracking 
    11932 self._mouse_pause() 
    11933 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11934 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11935 m.pause(self._mouse_pause_position) 
    11936 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11937 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11938 pu.show_text(p.description(), (x+10,y)) 
    11939 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11940 line 1926, in description 
    11941 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11942 ValueError: unsupported format character '-' (0x2d) at index 2 
    11943  
    11944 ValueError: unsupported format character '-' (0x2d) at index 2 
    11945  
    11946 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11947 line 1926, in description 
    11948 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11949  
    11950 See log for complete Python traceback. 
    11951  
    11952 Traceback (most recent call last): 
    11953 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\updateloop.py",
    11954 line 139, in _redraw_timer_callback 
    11955 self.session.ui.mouse_modes.mouse_pause_tracking() 
    11956 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11957 packages\chimerax\mouse_modes\mousemodes.py", line 493, in
    11958 mouse_pause_tracking 
    11959 self._mouse_pause() 
    11960 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11961 packages\chimerax\mouse_modes\mousemodes.py", line 628, in _mouse_pause 
    11962 m.pause(self._mouse_pause_position) 
    11963 File "D:\ChimeraX 1.2.5\bin\lib\site-
    11964 packages\chimerax\mouse_modes\std_modes.py", line 743, in pause 
    11965 pu.show_text(p.description(), (x+10,y)) 
    11966 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11967 line 1926, in description 
    11968 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11969 ValueError: unsupported format character '-' (0x2d) at index 2 
    11970  
    11971 ValueError: unsupported format character '-' (0x2d) at index 2 
    11972  
    11973 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\atomic\structure.py",
    11974 line 1926, in description 
    11975 return str(self.bond) + " " + dist_fmt % self.bond.length 
    11976  
    11977 See log for complete Python traceback. 
    11978  
    11979 Exactly two atoms must be selected! 
    11980 
    11981 > select clear
    11982 
    11983 > select add #12/U:27@NZ
    11984 
    11985 1 atom, 1 residue, 1 model selected 
    11986 
    11987 > select add #11/F:27@NZ
    11988 
    11989 2 atoms, 2 residues, 2 models selected 
    11990 
    11991 > distance #12/U:27@NZ #11/F:27@NZ
    11992 
    11993 Traceback (most recent call last): 
    11994 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    11995 103, in _create_distance 
    11996 run(self.session, "distance %s %s" % tuple(a.string(style="command") for a in
    11997 sel_atoms)) 
    11998 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    11999 line 36, in run 
    12000 results = command.run(text, log=log, return_json=return_json) 
    12001 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    12002 line 2852, in run 
    12003 result = ci.function(session, **kw_args) 
    12004 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    12005 line 118, in distance 
    12006 session.logger.info(("Distance between %s and %s: " +
    12007 session.pb_dist_monitor.distance_format) 
    12008 ValueError: unsupported format character '-' (0x2d) at index 30 
    12009  
    12010 ValueError: unsupported format character '-' (0x2d) at index 30 
    12011  
    12012 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    12013 line 118, in distance 
    12014 session.logger.info(("Distance between %s and %s: " +
    12015 session.pb_dist_monitor.distance_format) 
    12016  
    12017 See log for complete Python traceback. 
    12018  
    12019 Traceback (most recent call last): 
    12020 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\triggerset.py",
    12021 line 130, in invoke 
    12022 return self._func(self._name, data) 
    12023 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12024 packages\chimerax\dist_monitor\monitor.py", line 110, in _changes_handler 
    12025 self._update_distances(pseudobonds=[pb]) 
    12026 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12027 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12028 label_settings['text'] = fmt % pb.length 
    12029 ValueError: unsupported format character '-' (0x2d) at index 2 
    12030  
    12031 Error processing trigger "changes": 
    12032 ValueError: unsupported format character '-' (0x2d) at index 2 
    12033  
    12034 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12035 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12036 label_settings['text'] = fmt % pb.length 
    12037  
    12038 See log for complete Python traceback. 
    12039  
    12040 
    12041 > select clear
    12042 
    12043 > distance style symbol false
    12044 
    12045 Traceback (most recent call last): 
    12046 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\options\options.py",
    12047 line 170, in make_callback 
    12048 self._callback(self) 
    12049 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    12050 78, in <lambda> 
    12051 run(ses, "distance style " + cmd_suffix 
    12052 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    12053 line 36, in run 
    12054 results = command.run(text, log=log, return_json=return_json) 
    12055 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    12056 line 2852, in run 
    12057 result = ci.function(session, **kw_args) 
    12058 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    12059 line 195, in distance_style 
    12060 session.pb_dist_monitor.show_units = symbol 
    12061 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12062 packages\chimerax\dist_monitor\monitor.py", line 91, in _set_show_units 
    12063 self._update_distances() 
    12064 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12065 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12066 label_settings['text'] = fmt % pb.length 
    12067 ValueError: unsupported format character '-' (0x2d) at index 2 
    12068  
    12069 ValueError: unsupported format character '-' (0x2d) at index 2 
    12070  
    12071 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12072 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12073 label_settings['text'] = fmt % pb.length 
    12074  
    12075 See log for complete Python traceback. 
    12076  
    12077 
    12078 > distance style symbol true
    12079 
    12080 Traceback (most recent call last): 
    12081 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\options\options.py",
    12082 line 170, in make_callback 
    12083 self._callback(self) 
    12084 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    12085 78, in <lambda> 
    12086 run(ses, "distance style " + cmd_suffix 
    12087 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    12088 line 36, in run 
    12089 results = command.run(text, log=log, return_json=return_json) 
    12090 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    12091 line 2852, in run 
    12092 result = ci.function(session, **kw_args) 
    12093 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    12094 line 195, in distance_style 
    12095 session.pb_dist_monitor.show_units = symbol 
    12096 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12097 packages\chimerax\dist_monitor\monitor.py", line 91, in _set_show_units 
    12098 self._update_distances() 
    12099 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12100 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12101 label_settings['text'] = fmt % pb.length 
    12102 ValueError: unsupported format character '-' (0x2d) at index 2 
    12103  
    12104 ValueError: unsupported format character '-' (0x2d) at index 2 
    12105  
    12106 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12107 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12108 label_settings['text'] = fmt % pb.length 
    12109  
    12110 See log for complete Python traceback. 
    12111  
    12112 
    12113 > distance style symbol false
    12114 
    12115 Traceback (most recent call last): 
    12116 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\options\options.py",
    12117 line 170, in make_callback 
    12118 self._callback(self) 
    12119 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    12120 78, in <lambda> 
    12121 run(ses, "distance style " + cmd_suffix 
    12122 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    12123 line 36, in run 
    12124 results = command.run(text, log=log, return_json=return_json) 
    12125 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    12126 line 2852, in run 
    12127 result = ci.function(session, **kw_args) 
    12128 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    12129 line 195, in distance_style 
    12130 session.pb_dist_monitor.show_units = symbol 
    12131 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12132 packages\chimerax\dist_monitor\monitor.py", line 91, in _set_show_units 
    12133 self._update_distances() 
    12134 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12135 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12136 label_settings['text'] = fmt % pb.length 
    12137 ValueError: unsupported format character '-' (0x2d) at index 2 
    12138  
    12139 ValueError: unsupported format character '-' (0x2d) at index 2 
    12140  
    12141 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12142 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12143 label_settings['text'] = fmt % pb.length 
    12144  
    12145 See log for complete Python traceback. 
    12146  
    12147 
    12148 > distance style symbol true
    12149 
    12150 Traceback (most recent call last): 
    12151 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\ui\options\options.py",
    12152 line 170, in make_callback 
    12153 self._callback(self) 
    12154 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_ui\tool.py", line
    12155 78, in <lambda> 
    12156 run(ses, "distance style " + cmd_suffix 
    12157 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\run.py",
    12158 line 36, in run 
    12159 results = command.run(text, log=log, return_json=return_json) 
    12160 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\core\commands\cli.py",
    12161 line 2852, in run 
    12162 result = ci.function(session, **kw_args) 
    12163 File "D:\ChimeraX 1.2.5\bin\lib\site-packages\chimerax\dist_monitor\cmd.py",
    12164 line 195, in distance_style 
    12165 session.pb_dist_monitor.show_units = symbol 
    12166 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12167 packages\chimerax\dist_monitor\monitor.py", line 91, in _set_show_units 
    12168 self._update_distances() 
    12169 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12170 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12171 label_settings['text'] = fmt % pb.length 
    12172 ValueError: unsupported format character '-' (0x2d) at index 2 
    12173  
    12174 ValueError: unsupported format character '-' (0x2d) at index 2 
    12175  
    12176 File "D:\ChimeraX 1.2.5\bin\lib\site-
    12177 packages\chimerax\dist_monitor\monitor.py", line 139, in _update_distances 
    12178 label_settings['text'] = fmt % pb.length 
    12179  
    12180 See log for complete Python traceback. 
    12181  
    12182 
    12183 > distance style dashes 10
    12184 
    12185 > distance style dashes 10
    12186 
    12187 > distance style dashes 9
    12188 
    12189 > distance style dashes 9
    12190 
    12191 > distance style dashes 8
    12192 
    12193 > distance style dashes 8
    12194 
    12195 > distance style dashes 7
    12196 
    12197 > distance style dashes 7
    12198 
    12199 > distance style dashes 6
    12200 
    12201 > distance style dashes 6
    12202 
    12203 > distance style dashes 5
    12204 
    12205 > distance style dashes 5
    12206 
    12207 > distance style dashes 6
    12208 
    12209 > distance style dashes 6
    12210 
    12211 > distance style dashes 7
    12212 
    12213 > distance style dashes 7
    12214 
    12215 > distance style dashes 8
    12216 
    12217 > distance style dashes 8
    12218 
    12219 > distance style dashes 9
    12220 
    12221 > distance style dashes 9
    12222 
    12223 > distance style radius 0.491
    12224 
    12225 > distance style radius 0.491
    12226 
    12227 > distance style radius 0.481
    12228 
    12229 > distance style radius 0.481
    12230 
    12231 > distance style radius 0.471
    12232 
    12233 > distance style radius 0.471
    12234 
    12235 > distance style radius 0.461
    12236 
    12237 > distance style radius 0.461
    12238 
    12239 > distance style radius 0.451
    12240 
    12241 > distance style radius 0.451
    12242 
    12243 > distance style radius 0.441
    12244 
    12245 > distance style radius 0.441
    12246 
    12247 > distance style radius 0.431
    12248 
    12249 > distance style radius 0.431
    12250 
    12251 > distance style radius 0.421
    12252 
    12253 > distance style radius 0.421
    12254 
    12255 > distance style radius 0.411
    12256 
    12257 > distance style radius 0.411
    12258 
    12259 > distance style radius 0.401
    12260 
    12261 > distance style radius 0.401
    12262 
    12263 > distance style radius 0.391
    12264 
    12265 > distance style radius 0.391
    12266 
    12267 > distance style radius 0.381
     636[deleted a lot of the log to fit within ticket size limits]
    12268637
    12269638> distance style radius 0.381