Changes between Version 1 and Version 2 of Ticket #7970, comment 8


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Timestamp:
Nov 14, 2022, 12:24:33 PM (3 years ago)
Author:
Tom Goddard

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  • Ticket #7970, comment 8

    v1 v2  
    2525    https://ftp.ebi.ac.uk/pub/databases/metagenomics/peptide_database/2022_05/mgy_proteins_N.fa.gz
    2626
    27 I am downloading these files too plato
     27I am downloading these files to plato
    2828
    2929    /wynton/group/ferrin/databases/mol/ESMFold/
    3030
    31 It will take 2-3 days to get the 250 Gbytes of MGnify compressed sequence files.  I think that will be the 2.5 billion sequences.  I can then filter down to just the 200 million with ESMFold predictions better than 0.7 average plddt and better than 0.7 pTM.
     31It will take 10 days to get the 250 Gbytes of MGnify compressed sequence files, apparently bottlenecked by EBI providing only 1 Mbit/sec.  I think that will be the 2.5 billion sequences.  I can then filter down to just the 200 million with ESMFold predictions better than 0.7 average plddt and better than 0.7 pTM.