Changes between Initial Version and Version 1 of Ticket #6495


Ignore:
Timestamp:
Mar 29, 2022, 10:21:40 AM (4 years ago)
Author:
Eric Pettersen
Comment:

Legend:

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Added
Removed
Modified

  • Ticket #6495

    • Property Component Unassigned → Third Party
    • Property Owner set to Eric Pettersen
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → accepted
    • Property Summary ChimeraX bug report submission → XMAS: 'tuple' object is not callable

  • Ticket #6495 – Description

    initial v1  
    11741174pandas.concat instead. 
    11751175self.df = self.df.append(df_add, ignore_index=True) 
    1176 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1177 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1178 is deprecated and will be removed from pandas in a future version. Use
    1179 pandas.concat instead. 
    1180 self.df = self.df.append(df_add, ignore_index=True) 
    1181 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1182 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1183 is deprecated and will be removed from pandas in a future version. Use
    1184 pandas.concat instead. 
    1185 self.df = self.df.append(df_add, ignore_index=True) 
    1186 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1187 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1188 is deprecated and will be removed from pandas in a future version. Use
    1189 pandas.concat instead. 
    1190 self.df = self.df.append(df_add, ignore_index=True) 
    1191 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1192 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1193 is deprecated and will be removed from pandas in a future version. Use
    1194 pandas.concat instead. 
    1195 self.df = self.df.append(df_add, ignore_index=True) 
    1196 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1197 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1198 is deprecated and will be removed from pandas in a future version. Use
    1199 pandas.concat instead. 
    1200 self.df = self.df.append(df_add, ignore_index=True) 
    1201 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1202 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1203 is deprecated and will be removed from pandas in a future version. Use
    1204 pandas.concat instead. 
    1205 self.df = self.df.append(df_add, ignore_index=True) 
    1206 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1207 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1208 is deprecated and will be removed from pandas in a future version. Use
    1209 pandas.concat instead. 
    1210 self.df = self.df.append(df_add, ignore_index=True) 
    1211 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1212 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1213 is deprecated and will be removed from pandas in a future version. Use
    1214 pandas.concat instead. 
    1215 self.df = self.df.append(df_add, ignore_index=True) 
    1216 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1217 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1218 is deprecated and will be removed from pandas in a future version. Use
    1219 pandas.concat instead. 
    1220 self.df = self.df.append(df_add, ignore_index=True) 
    1221 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1222 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1223 is deprecated and will be removed from pandas in a future version. Use
    1224 pandas.concat instead. 
    1225 self.df = self.df.append(df_add, ignore_index=True) 
    1226 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1227 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1228 is deprecated and will be removed from pandas in a future version. Use
    1229 pandas.concat instead. 
    1230 self.df = self.df.append(df_add, ignore_index=True) 
    1231 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1232 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1233 is deprecated and will be removed from pandas in a future version. Use
    1234 pandas.concat instead. 
    1235 self.df = self.df.append(df_add, ignore_index=True) 
    1236 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1237 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1238 is deprecated and will be removed from pandas in a future version. Use
    1239 pandas.concat instead. 
    1240 self.df = self.df.append(df_add, ignore_index=True) 
    1241 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1242 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1243 is deprecated and will be removed from pandas in a future version. Use
    1244 pandas.concat instead. 
    1245 self.df = self.df.append(df_add, ignore_index=True) 
    1246 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1247 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1248 is deprecated and will be removed from pandas in a future version. Use
    1249 pandas.concat instead. 
    1250 self.df = self.df.append(df_add, ignore_index=True) 
    1251 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1252 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1253 is deprecated and will be removed from pandas in a future version. Use
    1254 pandas.concat instead. 
    1255 self.df = self.df.append(df_add, ignore_index=True) 
    1256 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1257 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1258 is deprecated and will be removed from pandas in a future version. Use
    1259 pandas.concat instead. 
    1260 self.df = self.df.append(df_add, ignore_index=True) 
    1261 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1262 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1263 is deprecated and will be removed from pandas in a future version. Use
    1264 pandas.concat instead. 
    1265 self.df = self.df.append(df_add, ignore_index=True) 
    1266 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1267 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1268 is deprecated and will be removed from pandas in a future version. Use
    1269 pandas.concat instead. 
    1270 self.df = self.df.append(df_add, ignore_index=True) 
    1271 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1272 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1273 is deprecated and will be removed from pandas in a future version. Use
    1274 pandas.concat instead. 
    1275 self.df = self.df.append(df_add, ignore_index=True) 
    1276 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1277 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1278 is deprecated and will be removed from pandas in a future version. Use
    1279 pandas.concat instead. 
    1280 self.df = self.df.append(df_add, ignore_index=True) 
    1281 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1282 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1283 is deprecated and will be removed from pandas in a future version. Use
    1284 pandas.concat instead. 
    1285 self.df = self.df.append(df_add, ignore_index=True) 
    1286 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1287 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1288 is deprecated and will be removed from pandas in a future version. Use
    1289 pandas.concat instead. 
    1290 self.df = self.df.append(df_add, ignore_index=True) 
    1291 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1292 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1293 is deprecated and will be removed from pandas in a future version. Use
    1294 pandas.concat instead. 
    1295 self.df = self.df.append(df_add, ignore_index=True) 
    1296 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1297 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1298 is deprecated and will be removed from pandas in a future version. Use
    1299 pandas.concat instead. 
    1300 self.df = self.df.append(df_add, ignore_index=True) 
    1301 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1302 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1303 is deprecated and will be removed from pandas in a future version. Use
    1304 pandas.concat instead. 
    1305 self.df = self.df.append(df_add, ignore_index=True) 
    1306 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1307 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1308 is deprecated and will be removed from pandas in a future version. Use
    1309 pandas.concat instead. 
    1310 self.df = self.df.append(df_add, ignore_index=True) 
    1311 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1312 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1313 is deprecated and will be removed from pandas in a future version. Use
    1314 pandas.concat instead. 
    1315 self.df = self.df.append(df_add, ignore_index=True) 
    1316 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1317 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1318 is deprecated and will be removed from pandas in a future version. Use
    1319 pandas.concat instead. 
    1320 self.df = self.df.append(df_add, ignore_index=True) 
    1321 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1322 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1323 is deprecated and will be removed from pandas in a future version. Use
    1324 pandas.concat instead. 
    1325 self.df = self.df.append(df_add, ignore_index=True) 
    1326 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1327 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1328 is deprecated and will be removed from pandas in a future version. Use
    1329 pandas.concat instead. 
    1330 self.df = self.df.append(df_add, ignore_index=True) 
    1331 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1332 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1333 is deprecated and will be removed from pandas in a future version. Use
    1334 pandas.concat instead. 
    1335 self.df = self.df.append(df_add, ignore_index=True) 
    1336 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1337 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1338 is deprecated and will be removed from pandas in a future version. Use
    1339 pandas.concat instead. 
    1340 self.df = self.df.append(df_add, ignore_index=True) 
    1341 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1342 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1343 is deprecated and will be removed from pandas in a future version. Use
    1344 pandas.concat instead. 
    1345 self.df = self.df.append(df_add, ignore_index=True) 
    1346 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1347 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1348 is deprecated and will be removed from pandas in a future version. Use
    1349 pandas.concat instead. 
    1350 self.df = self.df.append(df_add, ignore_index=True) 
    1351 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1352 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1353 is deprecated and will be removed from pandas in a future version. Use
    1354 pandas.concat instead. 
    1355 self.df = self.df.append(df_add, ignore_index=True) 
    1356 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1357 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1358 is deprecated and will be removed from pandas in a future version. Use
    1359 pandas.concat instead. 
    1360 self.df = self.df.append(df_add, ignore_index=True) 
    1361 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1362 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1363 is deprecated and will be removed from pandas in a future version. Use
    1364 pandas.concat instead. 
    1365 self.df = self.df.append(df_add, ignore_index=True) 
    1366 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1367 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1368 is deprecated and will be removed from pandas in a future version. Use
    1369 pandas.concat instead. 
    1370 self.df = self.df.append(df_add, ignore_index=True) 
    1371 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1372 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1373 is deprecated and will be removed from pandas in a future version. Use
    1374 pandas.concat instead. 
    1375 self.df = self.df.append(df_add, ignore_index=True) 
    1376 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1377 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1378 is deprecated and will be removed from pandas in a future version. Use
    1379 pandas.concat instead. 
    1380 self.df = self.df.append(df_add, ignore_index=True) 
    1381 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1382 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1383 is deprecated and will be removed from pandas in a future version. Use
    1384 pandas.concat instead. 
    1385 self.df = self.df.append(df_add, ignore_index=True) 
    1386 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1387 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1388 is deprecated and will be removed from pandas in a future version. Use
    1389 pandas.concat instead. 
    1390 self.df = self.df.append(df_add, ignore_index=True) 
    1391 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1392 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1393 is deprecated and will be removed from pandas in a future version. Use
    1394 pandas.concat instead. 
    1395 self.df = self.df.append(df_add, ignore_index=True) 
    1396 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1397 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1398 is deprecated and will be removed from pandas in a future version. Use
    1399 pandas.concat instead. 
    1400 self.df = self.df.append(df_add, ignore_index=True) 
    1401 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1402 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1403 is deprecated and will be removed from pandas in a future version. Use
    1404 pandas.concat instead. 
    1405 self.df = self.df.append(df_add, ignore_index=True) 
    1406 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1407 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1408 is deprecated and will be removed from pandas in a future version. Use
    1409 pandas.concat instead. 
    1410 self.df = self.df.append(df_add, ignore_index=True) 
    1411 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1412 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1413 is deprecated and will be removed from pandas in a future version. Use
    1414 pandas.concat instead. 
    1415 self.df = self.df.append(df_add, ignore_index=True) 
    1416 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1417 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1418 is deprecated and will be removed from pandas in a future version. Use
    1419 pandas.concat instead. 
    1420 self.df = self.df.append(df_add, ignore_index=True) 
    1421 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1422 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1423 is deprecated and will be removed from pandas in a future version. Use
    1424 pandas.concat instead. 
    1425 self.df = self.df.append(df_add, ignore_index=True) 
    1426 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1427 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1428 is deprecated and will be removed from pandas in a future version. Use
    1429 pandas.concat instead. 
    1430 self.df = self.df.append(df_add, ignore_index=True) 
    1431 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1432 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1433 is deprecated and will be removed from pandas in a future version. Use
    1434 pandas.concat instead. 
    1435 self.df = self.df.append(df_add, ignore_index=True) 
    1436 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1437 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1438 is deprecated and will be removed from pandas in a future version. Use
    1439 pandas.concat instead. 
    1440 self.df = self.df.append(df_add, ignore_index=True) 
    1441 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1442 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1443 is deprecated and will be removed from pandas in a future version. Use
    1444 pandas.concat instead. 
    1445 self.df = self.df.append(df_add, ignore_index=True) 
    1446 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1447 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1448 is deprecated and will be removed from pandas in a future version. Use
    1449 pandas.concat instead. 
    1450 self.df = self.df.append(df_add, ignore_index=True) 
    1451 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1452 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1453 is deprecated and will be removed from pandas in a future version. Use
    1454 pandas.concat instead. 
    1455 self.df = self.df.append(df_add, ignore_index=True) 
    1456 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1457 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1458 is deprecated and will be removed from pandas in a future version. Use
    1459 pandas.concat instead. 
    1460 self.df = self.df.append(df_add, ignore_index=True) 
    1461 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1462 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1463 is deprecated and will be removed from pandas in a future version. Use
    1464 pandas.concat instead. 
    1465 self.df = self.df.append(df_add, ignore_index=True) 
    1466 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1467 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1468 is deprecated and will be removed from pandas in a future version. Use
    1469 pandas.concat instead. 
    1470 self.df = self.df.append(df_add, ignore_index=True) 
    1471 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1472 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1473 is deprecated and will be removed from pandas in a future version. Use
    1474 pandas.concat instead. 
    1475 self.df = self.df.append(df_add, ignore_index=True) 
    1476 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1477 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1478 is deprecated and will be removed from pandas in a future version. Use
    1479 pandas.concat instead. 
    1480 self.df = self.df.append(df_add, ignore_index=True) 
    1481 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1482 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1483 is deprecated and will be removed from pandas in a future version. Use
    1484 pandas.concat instead. 
    1485 self.df = self.df.append(df_add, ignore_index=True) 
    1486 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1487 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1488 is deprecated and will be removed from pandas in a future version. Use
    1489 pandas.concat instead. 
    1490 self.df = self.df.append(df_add, ignore_index=True) 
    1491 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1492 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1493 is deprecated and will be removed from pandas in a future version. Use
    1494 pandas.concat instead. 
    1495 self.df = self.df.append(df_add, ignore_index=True) 
    1496 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1497 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1498 is deprecated and will be removed from pandas in a future version. Use
    1499 pandas.concat instead. 
    1500 self.df = self.df.append(df_add, ignore_index=True) 
    1501 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1502 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1503 is deprecated and will be removed from pandas in a future version. Use
    1504 pandas.concat instead. 
    1505 self.df = self.df.append(df_add, ignore_index=True) 
    1506 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1507 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1508 is deprecated and will be removed from pandas in a future version. Use
    1509 pandas.concat instead. 
    1510 self.df = self.df.append(df_add, ignore_index=True) 
    1511 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1512 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1513 is deprecated and will be removed from pandas in a future version. Use
    1514 pandas.concat instead. 
    1515 self.df = self.df.append(df_add, ignore_index=True) 
    1516 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1517 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1518 is deprecated and will be removed from pandas in a future version. Use
    1519 pandas.concat instead. 
    1520 self.df = self.df.append(df_add, ignore_index=True) 
    1521 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1522 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1523 is deprecated and will be removed from pandas in a future version. Use
    1524 pandas.concat instead. 
    1525 self.df = self.df.append(df_add, ignore_index=True) 
    1526 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1527 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1528 is deprecated and will be removed from pandas in a future version. Use
    1529 pandas.concat instead. 
    1530 self.df = self.df.append(df_add, ignore_index=True) 
    1531 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1532 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1533 is deprecated and will be removed from pandas in a future version. Use
    1534 pandas.concat instead. 
    1535 self.df = self.df.append(df_add, ignore_index=True) 
    1536 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1537 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1538 is deprecated and will be removed from pandas in a future version. Use
    1539 pandas.concat instead. 
    1540 self.df = self.df.append(df_add, ignore_index=True) 
    1541 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1542 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1543 is deprecated and will be removed from pandas in a future version. Use
    1544 pandas.concat instead. 
    1545 self.df = self.df.append(df_add, ignore_index=True) 
    1546 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1547 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1548 is deprecated and will be removed from pandas in a future version. Use
    1549 pandas.concat instead. 
    1550 self.df = self.df.append(df_add, ignore_index=True) 
    1551 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1552 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1553 is deprecated and will be removed from pandas in a future version. Use
    1554 pandas.concat instead. 
    1555 self.df = self.df.append(df_add, ignore_index=True) 
    1556 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1557 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1558 is deprecated and will be removed from pandas in a future version. Use
    1559 pandas.concat instead. 
    1560 self.df = self.df.append(df_add, ignore_index=True) 
    1561 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1562 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1563 is deprecated and will be removed from pandas in a future version. Use
    1564 pandas.concat instead. 
    1565 self.df = self.df.append(df_add, ignore_index=True) 
    1566 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1567 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1568 is deprecated and will be removed from pandas in a future version. Use
    1569 pandas.concat instead. 
    1570 self.df = self.df.append(df_add, ignore_index=True) 
    1571 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1572 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1573 is deprecated and will be removed from pandas in a future version. Use
    1574 pandas.concat instead. 
    1575 self.df = self.df.append(df_add, ignore_index=True) 
    1576 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1577 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1578 is deprecated and will be removed from pandas in a future version. Use
    1579 pandas.concat instead. 
    1580 self.df = self.df.append(df_add, ignore_index=True) 
    1581 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1582 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1583 is deprecated and will be removed from pandas in a future version. Use
    1584 pandas.concat instead. 
    1585 self.df = self.df.append(df_add, ignore_index=True) 
    1586 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1587 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1588 is deprecated and will be removed from pandas in a future version. Use
    1589 pandas.concat instead. 
    1590 self.df = self.df.append(df_add, ignore_index=True) 
    1591 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1592 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1593 is deprecated and will be removed from pandas in a future version. Use
    1594 pandas.concat instead. 
    1595 self.df = self.df.append(df_add, ignore_index=True) 
    1596 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1597 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1598 is deprecated and will be removed from pandas in a future version. Use
    1599 pandas.concat instead. 
    1600 self.df = self.df.append(df_add, ignore_index=True) 
    1601 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1602 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1603 is deprecated and will be removed from pandas in a future version. Use
    1604 pandas.concat instead. 
    1605 self.df = self.df.append(df_add, ignore_index=True) 
    1606 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1607 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1608 is deprecated and will be removed from pandas in a future version. Use
    1609 pandas.concat instead. 
    1610 self.df = self.df.append(df_add, ignore_index=True) 
    1611 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1612 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1613 is deprecated and will be removed from pandas in a future version. Use
    1614 pandas.concat instead. 
    1615 self.df = self.df.append(df_add, ignore_index=True) 
    1616 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1617 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1618 is deprecated and will be removed from pandas in a future version. Use
    1619 pandas.concat instead. 
    1620 self.df = self.df.append(df_add, ignore_index=True) 
    1621 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1622 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1623 is deprecated and will be removed from pandas in a future version. Use
    1624 pandas.concat instead. 
    1625 self.df = self.df.append(df_add, ignore_index=True) 
    1626 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1627 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1628 is deprecated and will be removed from pandas in a future version. Use
    1629 pandas.concat instead. 
    1630 self.df = self.df.append(df_add, ignore_index=True) 
    1631 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1632 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1633 is deprecated and will be removed from pandas in a future version. Use
    1634 pandas.concat instead. 
    1635 self.df = self.df.append(df_add, ignore_index=True) 
    1636 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1637 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1638 is deprecated and will be removed from pandas in a future version. Use
    1639 pandas.concat instead. 
    1640 self.df = self.df.append(df_add, ignore_index=True) 
    1641 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1642 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1643 is deprecated and will be removed from pandas in a future version. Use
    1644 pandas.concat instead. 
    1645 self.df = self.df.append(df_add, ignore_index=True) 
    1646 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1647 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1648 is deprecated and will be removed from pandas in a future version. Use
    1649 pandas.concat instead. 
    1650 self.df = self.df.append(df_add, ignore_index=True) 
    1651 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1652 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1653 is deprecated and will be removed from pandas in a future version. Use
    1654 pandas.concat instead. 
    1655 self.df = self.df.append(df_add, ignore_index=True) 
    1656 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1657 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1658 is deprecated and will be removed from pandas in a future version. Use
    1659 pandas.concat instead. 
    1660 self.df = self.df.append(df_add, ignore_index=True) 
    1661 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1662 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1663 is deprecated and will be removed from pandas in a future version. Use
    1664 pandas.concat instead. 
    1665 self.df = self.df.append(df_add, ignore_index=True) 
    1666 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1667 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1668 is deprecated and will be removed from pandas in a future version. Use
    1669 pandas.concat instead. 
    1670 self.df = self.df.append(df_add, ignore_index=True) 
    1671 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1672 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1673 is deprecated and will be removed from pandas in a future version. Use
    1674 pandas.concat instead. 
    1675 self.df = self.df.append(df_add, ignore_index=True) 
    1676 Unique peptide pairs with pseudobonds: 39 
    1677 Traceback (most recent call last): 
    1678 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1679 packages\chimerax\xmas\tool.py", line 142, in <lambda> 
    1680 function = lambda _, s=selector, t=key: self.map_button_clicked(s, 
    1681 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1682 packages\chimerax\xmas\tool.py", line 844, in map_button_clicked 
    1683 self.map_crosslinks(self.checked_models, checked_files) 
    1684 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1685 packages\chimerax\xmas\tool.py", line 1093, in map_crosslinks 
    1686 created_model = self.create_pseudobonds_model(pbonds, 
    1687 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1688 packages\chimerax\xmas\tool.py", line 1124, in create_pseudobonds_model 
    1689 group = self.get_pseudobonds_model(name) 
    1690 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1691 packages\chimerax\xmas\tool.py", line 1180, in get_pseudobonds_model 
    1692 n = re.search("(\d+)", extension) + 1 
    1693 TypeError: unsupported operand type(s) for +: 're.Match' and 'int' 
    1694  
    1695 TypeError: unsupported operand type(s) for +: 're.Match' and 'int' 
    1696  
    1697 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1698 packages\chimerax\xmas\tool.py", line 1180, in get_pseudobonds_model 
    1699 n = re.search("(\d+)", extension) + 1 
    1700  
    1701 See log for complete Python traceback. 
    1702  
    1703 
    1704 > ui mousemode right select
    1705 
    1706 > select clear
    1707 
    1708 > hide #4 models
    1709 
    1710 > show #4 models
    1711 
    1712 > hide #3 models
    1713 
    1714 > close #3
    1715 
    1716 > close #4
    1717 
    1718  
    1719 Peptide pair mapping of PD evidence file:
    1720 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx 
    1721 Unique peptide pairs: 155 out of 155 
    1722 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1723 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1724 is deprecated and will be removed from pandas in a future version. Use
    1725 pandas.concat instead. 
    1726 self.df = self.df.append(df_add, ignore_index=True) 
    1727 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1728 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1729 is deprecated and will be removed from pandas in a future version. Use
    1730 pandas.concat instead. 
    1731 self.df = self.df.append(df_add, ignore_index=True) 
    1732 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1733 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1734 is deprecated and will be removed from pandas in a future version. Use
    1735 pandas.concat instead. 
    1736 self.df = self.df.append(df_add, ignore_index=True) 
    1737 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1738 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1739 is deprecated and will be removed from pandas in a future version. Use
    1740 pandas.concat instead. 
    1741 self.df = self.df.append(df_add, ignore_index=True) 
    1742 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1743 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1744 is deprecated and will be removed from pandas in a future version. Use
    1745 pandas.concat instead. 
    1746 self.df = self.df.append(df_add, ignore_index=True) 
    1747 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1748 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1749 is deprecated and will be removed from pandas in a future version. Use
    1750 pandas.concat instead. 
    1751 self.df = self.df.append(df_add, ignore_index=True) 
    1752 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1753 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1754 is deprecated and will be removed from pandas in a future version. Use
    1755 pandas.concat instead. 
    1756 self.df = self.df.append(df_add, ignore_index=True) 
    1757 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1758 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1759 is deprecated and will be removed from pandas in a future version. Use
    1760 pandas.concat instead. 
    1761 self.df = self.df.append(df_add, ignore_index=True) 
    1762 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1763 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1764 is deprecated and will be removed from pandas in a future version. Use
    1765 pandas.concat instead. 
    1766 self.df = self.df.append(df_add, ignore_index=True) 
    1767 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1768 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1769 is deprecated and will be removed from pandas in a future version. Use
    1770 pandas.concat instead. 
    1771 self.df = self.df.append(df_add, ignore_index=True) 
    1772 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1773 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1774 is deprecated and will be removed from pandas in a future version. Use
    1775 pandas.concat instead. 
    1776 self.df = self.df.append(df_add, ignore_index=True) 
    1777 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1778 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1779 is deprecated and will be removed from pandas in a future version. Use
    1780 pandas.concat instead. 
    1781 self.df = self.df.append(df_add, ignore_index=True) 
    1782 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1783 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1784 is deprecated and will be removed from pandas in a future version. Use
    1785 pandas.concat instead. 
    1786 self.df = self.df.append(df_add, ignore_index=True) 
    1787 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1788 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1789 is deprecated and will be removed from pandas in a future version. Use
    1790 pandas.concat instead. 
    1791 self.df = self.df.append(df_add, ignore_index=True) 
    1792 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1793 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1794 is deprecated and will be removed from pandas in a future version. Use
    1795 pandas.concat instead. 
    1796 self.df = self.df.append(df_add, ignore_index=True) 
    1797 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1798 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1799 is deprecated and will be removed from pandas in a future version. Use
    1800 pandas.concat instead. 
    1801 self.df = self.df.append(df_add, ignore_index=True) 
    1802 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1803 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1804 is deprecated and will be removed from pandas in a future version. Use
    1805 pandas.concat instead. 
    1806 self.df = self.df.append(df_add, ignore_index=True) 
    1807 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1808 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1809 is deprecated and will be removed from pandas in a future version. Use
    1810 pandas.concat instead. 
    1811 self.df = self.df.append(df_add, ignore_index=True) 
    1812 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1813 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1814 is deprecated and will be removed from pandas in a future version. Use
    1815 pandas.concat instead. 
    1816 self.df = self.df.append(df_add, ignore_index=True) 
    1817 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1818 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1819 is deprecated and will be removed from pandas in a future version. Use
    1820 pandas.concat instead. 
    1821 self.df = self.df.append(df_add, ignore_index=True) 
    1822 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1823 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1824 is deprecated and will be removed from pandas in a future version. Use
    1825 pandas.concat instead. 
    1826 self.df = self.df.append(df_add, ignore_index=True) 
    1827 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1828 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1829 is deprecated and will be removed from pandas in a future version. Use
    1830 pandas.concat instead. 
    1831 self.df = self.df.append(df_add, ignore_index=True) 
    1832 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1833 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1834 is deprecated and will be removed from pandas in a future version. Use
    1835 pandas.concat instead. 
    1836 self.df = self.df.append(df_add, ignore_index=True) 
    1837 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1838 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1839 is deprecated and will be removed from pandas in a future version. Use
    1840 pandas.concat instead. 
    1841 self.df = self.df.append(df_add, ignore_index=True) 
    1842 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1843 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1844 is deprecated and will be removed from pandas in a future version. Use
    1845 pandas.concat instead. 
    1846 self.df = self.df.append(df_add, ignore_index=True) 
    1847 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1848 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1849 is deprecated and will be removed from pandas in a future version. Use
    1850 pandas.concat instead. 
    1851 self.df = self.df.append(df_add, ignore_index=True) 
    1852 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1853 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1854 is deprecated and will be removed from pandas in a future version. Use
    1855 pandas.concat instead. 
    1856 self.df = self.df.append(df_add, ignore_index=True) 
    1857 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1858 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1859 is deprecated and will be removed from pandas in a future version. Use
    1860 pandas.concat instead. 
    1861 self.df = self.df.append(df_add, ignore_index=True) 
    1862 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1863 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1864 is deprecated and will be removed from pandas in a future version. Use
    1865 pandas.concat instead. 
    1866 self.df = self.df.append(df_add, ignore_index=True) 
    1867 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1868 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1869 is deprecated and will be removed from pandas in a future version. Use
    1870 pandas.concat instead. 
    1871 self.df = self.df.append(df_add, ignore_index=True) 
    1872 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1873 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1874 is deprecated and will be removed from pandas in a future version. Use
    1875 pandas.concat instead. 
    1876 self.df = self.df.append(df_add, ignore_index=True) 
    1877 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1878 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1879 is deprecated and will be removed from pandas in a future version. Use
    1880 pandas.concat instead. 
    1881 self.df = self.df.append(df_add, ignore_index=True) 
    1882 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1883 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1884 is deprecated and will be removed from pandas in a future version. Use
    1885 pandas.concat instead. 
    1886 self.df = self.df.append(df_add, ignore_index=True) 
    1887 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1888 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1889 is deprecated and will be removed from pandas in a future version. Use
    1890 pandas.concat instead. 
    1891 self.df = self.df.append(df_add, ignore_index=True) 
    1892 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1893 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1894 is deprecated and will be removed from pandas in a future version. Use
    1895 pandas.concat instead. 
    1896 self.df = self.df.append(df_add, ignore_index=True) 
    1897 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1898 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1899 is deprecated and will be removed from pandas in a future version. Use
    1900 pandas.concat instead. 
    1901 self.df = self.df.append(df_add, ignore_index=True) 
    1902 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1903 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1904 is deprecated and will be removed from pandas in a future version. Use
    1905 pandas.concat instead. 
    1906 self.df = self.df.append(df_add, ignore_index=True) 
    1907 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1908 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1909 is deprecated and will be removed from pandas in a future version. Use
    1910 pandas.concat instead. 
    1911 self.df = self.df.append(df_add, ignore_index=True) 
    1912 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1913 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1914 is deprecated and will be removed from pandas in a future version. Use
    1915 pandas.concat instead. 
    1916 self.df = self.df.append(df_add, ignore_index=True) 
    1917 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1918 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1919 is deprecated and will be removed from pandas in a future version. Use
    1920 pandas.concat instead. 
    1921 self.df = self.df.append(df_add, ignore_index=True) 
    1922 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1923 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1924 is deprecated and will be removed from pandas in a future version. Use
    1925 pandas.concat instead. 
    1926 self.df = self.df.append(df_add, ignore_index=True) 
    1927 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1928 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1929 is deprecated and will be removed from pandas in a future version. Use
    1930 pandas.concat instead. 
    1931 self.df = self.df.append(df_add, ignore_index=True) 
    1932 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1933 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1934 is deprecated and will be removed from pandas in a future version. Use
    1935 pandas.concat instead. 
    1936 self.df = self.df.append(df_add, ignore_index=True) 
    1937 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1938 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1939 is deprecated and will be removed from pandas in a future version. Use
    1940 pandas.concat instead. 
    1941 self.df = self.df.append(df_add, ignore_index=True) 
    1942 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1943 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1944 is deprecated and will be removed from pandas in a future version. Use
    1945 pandas.concat instead. 
    1946 self.df = self.df.append(df_add, ignore_index=True) 
    1947 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1948 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1949 is deprecated and will be removed from pandas in a future version. Use
    1950 pandas.concat instead. 
    1951 self.df = self.df.append(df_add, ignore_index=True) 
    1952 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1953 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1954 is deprecated and will be removed from pandas in a future version. Use
    1955 pandas.concat instead. 
    1956 self.df = self.df.append(df_add, ignore_index=True) 
    1957 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1958 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1959 is deprecated and will be removed from pandas in a future version. Use
    1960 pandas.concat instead. 
    1961 self.df = self.df.append(df_add, ignore_index=True) 
    1962 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1963 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1964 is deprecated and will be removed from pandas in a future version. Use
    1965 pandas.concat instead. 
    1966 self.df = self.df.append(df_add, ignore_index=True) 
    1967 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1968 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1969 is deprecated and will be removed from pandas in a future version. Use
    1970 pandas.concat instead. 
    1971 self.df = self.df.append(df_add, ignore_index=True) 
    1972 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1973 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1974 is deprecated and will be removed from pandas in a future version. Use
    1975 pandas.concat instead. 
    1976 self.df = self.df.append(df_add, ignore_index=True) 
    1977 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1978 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1979 is deprecated and will be removed from pandas in a future version. Use
    1980 pandas.concat instead. 
    1981 self.df = self.df.append(df_add, ignore_index=True) 
    1982 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1983 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1984 is deprecated and will be removed from pandas in a future version. Use
    1985 pandas.concat instead. 
    1986 self.df = self.df.append(df_add, ignore_index=True) 
    1987 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1988 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1989 is deprecated and will be removed from pandas in a future version. Use
    1990 pandas.concat instead. 
    1991 self.df = self.df.append(df_add, ignore_index=True) 
    1992 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1993 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1994 is deprecated and will be removed from pandas in a future version. Use
    1995 pandas.concat instead. 
    1996 self.df = self.df.append(df_add, ignore_index=True) 
    1997 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    1998 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    1999 is deprecated and will be removed from pandas in a future version. Use
    2000 pandas.concat instead. 
    2001 self.df = self.df.append(df_add, ignore_index=True) 
    2002 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2003 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2004 is deprecated and will be removed from pandas in a future version. Use
    2005 pandas.concat instead. 
    2006 self.df = self.df.append(df_add, ignore_index=True) 
    2007 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2008 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2009 is deprecated and will be removed from pandas in a future version. Use
    2010 pandas.concat instead. 
    2011 self.df = self.df.append(df_add, ignore_index=True) 
    2012 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2013 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2014 is deprecated and will be removed from pandas in a future version. Use
    2015 pandas.concat instead. 
    2016 self.df = self.df.append(df_add, ignore_index=True) 
    2017 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2018 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2019 is deprecated and will be removed from pandas in a future version. Use
    2020 pandas.concat instead. 
    2021 self.df = self.df.append(df_add, ignore_index=True) 
    2022 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2023 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2024 is deprecated and will be removed from pandas in a future version. Use
    2025 pandas.concat instead. 
    2026 self.df = self.df.append(df_add, ignore_index=True) 
    2027 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2028 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2029 is deprecated and will be removed from pandas in a future version. Use
    2030 pandas.concat instead. 
    2031 self.df = self.df.append(df_add, ignore_index=True) 
    2032 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2033 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2034 is deprecated and will be removed from pandas in a future version. Use
    2035 pandas.concat instead. 
    2036 self.df = self.df.append(df_add, ignore_index=True) 
    2037 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2038 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2039 is deprecated and will be removed from pandas in a future version. Use
    2040 pandas.concat instead. 
    2041 self.df = self.df.append(df_add, ignore_index=True) 
    2042 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2043 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2044 is deprecated and will be removed from pandas in a future version. Use
    2045 pandas.concat instead. 
    2046 self.df = self.df.append(df_add, ignore_index=True) 
    2047 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2048 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2049 is deprecated and will be removed from pandas in a future version. Use
    2050 pandas.concat instead. 
    2051 self.df = self.df.append(df_add, ignore_index=True) 
    2052 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2053 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2054 is deprecated and will be removed from pandas in a future version. Use
    2055 pandas.concat instead. 
    2056 self.df = self.df.append(df_add, ignore_index=True) 
    2057 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2058 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2059 is deprecated and will be removed from pandas in a future version. Use
    2060 pandas.concat instead. 
    2061 self.df = self.df.append(df_add, ignore_index=True) 
    2062 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2063 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2064 is deprecated and will be removed from pandas in a future version. Use
    2065 pandas.concat instead. 
    2066 self.df = self.df.append(df_add, ignore_index=True) 
    2067 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2068 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2069 is deprecated and will be removed from pandas in a future version. Use
    2070 pandas.concat instead. 
    2071 self.df = self.df.append(df_add, ignore_index=True) 
    2072 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2073 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2074 is deprecated and will be removed from pandas in a future version. Use
    2075 pandas.concat instead. 
    2076 self.df = self.df.append(df_add, ignore_index=True) 
    2077 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2078 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2079 is deprecated and will be removed from pandas in a future version. Use
    2080 pandas.concat instead. 
    2081 self.df = self.df.append(df_add, ignore_index=True) 
    2082 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2083 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2084 is deprecated and will be removed from pandas in a future version. Use
    2085 pandas.concat instead. 
    2086 self.df = self.df.append(df_add, ignore_index=True) 
    2087 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2088 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2089 is deprecated and will be removed from pandas in a future version. Use
    2090 pandas.concat instead. 
    2091 self.df = self.df.append(df_add, ignore_index=True) 
    2092 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2093 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2094 is deprecated and will be removed from pandas in a future version. Use
    2095 pandas.concat instead. 
    2096 self.df = self.df.append(df_add, ignore_index=True) 
    2097 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2098 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2099 is deprecated and will be removed from pandas in a future version. Use
    2100 pandas.concat instead. 
    2101 self.df = self.df.append(df_add, ignore_index=True) 
    2102 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2103 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2104 is deprecated and will be removed from pandas in a future version. Use
    2105 pandas.concat instead. 
    2106 self.df = self.df.append(df_add, ignore_index=True) 
    2107 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2108 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2109 is deprecated and will be removed from pandas in a future version. Use
    2110 pandas.concat instead. 
    2111 self.df = self.df.append(df_add, ignore_index=True) 
    2112 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2113 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2114 is deprecated and will be removed from pandas in a future version. Use
    2115 pandas.concat instead. 
    2116 self.df = self.df.append(df_add, ignore_index=True) 
    2117 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2118 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2119 is deprecated and will be removed from pandas in a future version. Use
    2120 pandas.concat instead. 
    2121 self.df = self.df.append(df_add, ignore_index=True) 
    2122 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2123 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2124 is deprecated and will be removed from pandas in a future version. Use
    2125 pandas.concat instead. 
    2126 self.df = self.df.append(df_add, ignore_index=True) 
    2127 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2128 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2129 is deprecated and will be removed from pandas in a future version. Use
    2130 pandas.concat instead. 
    2131 self.df = self.df.append(df_add, ignore_index=True) 
    2132 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2133 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2134 is deprecated and will be removed from pandas in a future version. Use
    2135 pandas.concat instead. 
    2136 self.df = self.df.append(df_add, ignore_index=True) 
    2137 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2138 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2139 is deprecated and will be removed from pandas in a future version. Use
    2140 pandas.concat instead. 
    2141 self.df = self.df.append(df_add, ignore_index=True) 
    2142 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2143 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2144 is deprecated and will be removed from pandas in a future version. Use
    2145 pandas.concat instead. 
    2146 self.df = self.df.append(df_add, ignore_index=True) 
    2147 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2148 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2149 is deprecated and will be removed from pandas in a future version. Use
    2150 pandas.concat instead. 
    2151 self.df = self.df.append(df_add, ignore_index=True) 
    2152 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2153 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2154 is deprecated and will be removed from pandas in a future version. Use
    2155 pandas.concat instead. 
    2156 self.df = self.df.append(df_add, ignore_index=True) 
    2157 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2158 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2159 is deprecated and will be removed from pandas in a future version. Use
    2160 pandas.concat instead. 
    2161 self.df = self.df.append(df_add, ignore_index=True) 
    2162 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2163 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2164 is deprecated and will be removed from pandas in a future version. Use
    2165 pandas.concat instead. 
    2166 self.df = self.df.append(df_add, ignore_index=True) 
    2167 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2168 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2169 is deprecated and will be removed from pandas in a future version. Use
    2170 pandas.concat instead. 
    2171 self.df = self.df.append(df_add, ignore_index=True) 
    2172 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2173 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2174 is deprecated and will be removed from pandas in a future version. Use
    2175 pandas.concat instead. 
    2176 self.df = self.df.append(df_add, ignore_index=True) 
    2177 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2178 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2179 is deprecated and will be removed from pandas in a future version. Use
    2180 pandas.concat instead. 
    2181 self.df = self.df.append(df_add, ignore_index=True) 
    2182 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2183 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2184 is deprecated and will be removed from pandas in a future version. Use
    2185 pandas.concat instead. 
    2186 self.df = self.df.append(df_add, ignore_index=True) 
    2187 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2188 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2189 is deprecated and will be removed from pandas in a future version. Use
    2190 pandas.concat instead. 
    2191 self.df = self.df.append(df_add, ignore_index=True) 
    2192 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2193 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2194 is deprecated and will be removed from pandas in a future version. Use
    2195 pandas.concat instead. 
    2196 self.df = self.df.append(df_add, ignore_index=True) 
    2197 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2198 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2199 is deprecated and will be removed from pandas in a future version. Use
    2200 pandas.concat instead. 
    2201 self.df = self.df.append(df_add, ignore_index=True) 
    2202 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2203 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2204 is deprecated and will be removed from pandas in a future version. Use
    2205 pandas.concat instead. 
    2206 self.df = self.df.append(df_add, ignore_index=True) 
    2207 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2208 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2209 is deprecated and will be removed from pandas in a future version. Use
    2210 pandas.concat instead. 
    2211 self.df = self.df.append(df_add, ignore_index=True) 
    2212 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2213 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2214 is deprecated and will be removed from pandas in a future version. Use
    2215 pandas.concat instead. 
    2216 self.df = self.df.append(df_add, ignore_index=True) 
    2217 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2218 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2219 is deprecated and will be removed from pandas in a future version. Use
    2220 pandas.concat instead. 
    2221 self.df = self.df.append(df_add, ignore_index=True) 
    2222 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2223 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2224 is deprecated and will be removed from pandas in a future version. Use
    2225 pandas.concat instead. 
    2226 self.df = self.df.append(df_add, ignore_index=True) 
    2227 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2228 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2229 is deprecated and will be removed from pandas in a future version. Use
    2230 pandas.concat instead. 
    2231 self.df = self.df.append(df_add, ignore_index=True) 
    2232 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2233 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2234 is deprecated and will be removed from pandas in a future version. Use
    2235 pandas.concat instead. 
    2236 self.df = self.df.append(df_add, ignore_index=True) 
    2237 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2238 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2239 is deprecated and will be removed from pandas in a future version. Use
    2240 pandas.concat instead. 
    2241 self.df = self.df.append(df_add, ignore_index=True) 
    2242 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2243 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2244 is deprecated and will be removed from pandas in a future version. Use
    2245 pandas.concat instead. 
    2246 self.df = self.df.append(df_add, ignore_index=True) 
    2247 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2248 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2249 is deprecated and will be removed from pandas in a future version. Use
    2250 pandas.concat instead. 
    2251 self.df = self.df.append(df_add, ignore_index=True) 
    2252 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2253 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2254 is deprecated and will be removed from pandas in a future version. Use
    2255 pandas.concat instead. 
    2256 self.df = self.df.append(df_add, ignore_index=True) 
    2257 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2258 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2259 is deprecated and will be removed from pandas in a future version. Use
    2260 pandas.concat instead. 
    2261 self.df = self.df.append(df_add, ignore_index=True) 
    2262 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2263 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2264 is deprecated and will be removed from pandas in a future version. Use
    2265 pandas.concat instead. 
    2266 self.df = self.df.append(df_add, ignore_index=True) 
    2267 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2268 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2269 is deprecated and will be removed from pandas in a future version. Use
    2270 pandas.concat instead. 
    2271 self.df = self.df.append(df_add, ignore_index=True) 
    2272 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2273 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2274 is deprecated and will be removed from pandas in a future version. Use
    2275 pandas.concat instead. 
    2276 self.df = self.df.append(df_add, ignore_index=True) 
    2277 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2278 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2279 is deprecated and will be removed from pandas in a future version. Use
    2280 pandas.concat instead. 
    2281 self.df = self.df.append(df_add, ignore_index=True) 
    2282 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2283 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2284 is deprecated and will be removed from pandas in a future version. Use
    2285 pandas.concat instead. 
    2286 self.df = self.df.append(df_add, ignore_index=True) 
    2287 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2288 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2289 is deprecated and will be removed from pandas in a future version. Use
    2290 pandas.concat instead. 
    2291 self.df = self.df.append(df_add, ignore_index=True) 
    2292 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2293 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2294 is deprecated and will be removed from pandas in a future version. Use
    2295 pandas.concat instead. 
    2296 self.df = self.df.append(df_add, ignore_index=True) 
    2297 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2298 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2299 is deprecated and will be removed from pandas in a future version. Use
    2300 pandas.concat instead. 
    2301 self.df = self.df.append(df_add, ignore_index=True) 
    2302 Unique peptide pairs with pseudobonds: 39 
    2303 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2304 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2305 is deprecated and will be removed from pandas in a future version. Use
    2306 pandas.concat instead. 
    2307 self.df = self.df.append(df_add, ignore_index=True) 
    2308 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2309 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2310 is deprecated and will be removed from pandas in a future version. Use
    2311 pandas.concat instead. 
    2312 self.df = self.df.append(df_add, ignore_index=True) 
    2313 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2314 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2315 is deprecated and will be removed from pandas in a future version. Use
    2316 pandas.concat instead. 
    2317 self.df = self.df.append(df_add, ignore_index=True) 
    2318 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2319 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2320 is deprecated and will be removed from pandas in a future version. Use
    2321 pandas.concat instead. 
    2322 self.df = self.df.append(df_add, ignore_index=True) 
    2323 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2324 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2325 is deprecated and will be removed from pandas in a future version. Use
    2326 pandas.concat instead. 
    2327 self.df = self.df.append(df_add, ignore_index=True) 
    2328 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2329 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2330 is deprecated and will be removed from pandas in a future version. Use
    2331 pandas.concat instead. 
    2332 self.df = self.df.append(df_add, ignore_index=True) 
    2333 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2334 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2335 is deprecated and will be removed from pandas in a future version. Use
    2336 pandas.concat instead. 
    2337 self.df = self.df.append(df_add, ignore_index=True) 
    2338 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2339 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2340 is deprecated and will be removed from pandas in a future version. Use
    2341 pandas.concat instead. 
    2342 self.df = self.df.append(df_add, ignore_index=True) 
    2343 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2344 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2345 is deprecated and will be removed from pandas in a future version. Use
    2346 pandas.concat instead. 
    2347 self.df = self.df.append(df_add, ignore_index=True) 
    2348 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2349 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2350 is deprecated and will be removed from pandas in a future version. Use
    2351 pandas.concat instead. 
    2352 self.df = self.df.append(df_add, ignore_index=True) 
    2353 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2354 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2355 is deprecated and will be removed from pandas in a future version. Use
    2356 pandas.concat instead. 
    2357 self.df = self.df.append(df_add, ignore_index=True) 
    2358 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2359 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2360 is deprecated and will be removed from pandas in a future version. Use
    2361 pandas.concat instead. 
    2362 self.df = self.df.append(df_add, ignore_index=True) 
    2363 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2364 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2365 is deprecated and will be removed from pandas in a future version. Use
    2366 pandas.concat instead. 
    2367 self.df = self.df.append(df_add, ignore_index=True) 
    2368 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2369 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2370 is deprecated and will be removed from pandas in a future version. Use
    2371 pandas.concat instead. 
    2372 self.df = self.df.append(df_add, ignore_index=True) 
    2373 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2374 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2375 is deprecated and will be removed from pandas in a future version. Use
    2376 pandas.concat instead. 
    2377 self.df = self.df.append(df_add, ignore_index=True) 
    2378 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2379 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2380 is deprecated and will be removed from pandas in a future version. Use
    2381 pandas.concat instead. 
    2382 self.df = self.df.append(df_add, ignore_index=True) 
    2383 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2384 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2385 is deprecated and will be removed from pandas in a future version. Use
    2386 pandas.concat instead. 
    2387 self.df = self.df.append(df_add, ignore_index=True) 
    2388 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2389 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2390 is deprecated and will be removed from pandas in a future version. Use
    2391 pandas.concat instead. 
    2392 self.df = self.df.append(df_add, ignore_index=True) 
    2393 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2394 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2395 is deprecated and will be removed from pandas in a future version. Use
    2396 pandas.concat instead. 
    2397 self.df = self.df.append(df_add, ignore_index=True) 
    2398 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2399 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2400 is deprecated and will be removed from pandas in a future version. Use
    2401 pandas.concat instead. 
    2402 self.df = self.df.append(df_add, ignore_index=True) 
    2403 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2404 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2405 is deprecated and will be removed from pandas in a future version. Use
    2406 pandas.concat instead. 
    2407 self.df = self.df.append(df_add, ignore_index=True) 
    2408 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2409 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2410 is deprecated and will be removed from pandas in a future version. Use
    2411 pandas.concat instead. 
    2412 self.df = self.df.append(df_add, ignore_index=True) 
    2413 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2414 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2415 is deprecated and will be removed from pandas in a future version. Use
    2416 pandas.concat instead. 
    2417 self.df = self.df.append(df_add, ignore_index=True) 
    2418 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2419 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2420 is deprecated and will be removed from pandas in a future version. Use
    2421 pandas.concat instead. 
    2422 self.df = self.df.append(df_add, ignore_index=True) 
    2423 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2424 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2425 is deprecated and will be removed from pandas in a future version. Use
    2426 pandas.concat instead. 
    2427 self.df = self.df.append(df_add, ignore_index=True) 
    2428 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2429 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2430 is deprecated and will be removed from pandas in a future version. Use
    2431 pandas.concat instead. 
    2432 self.df = self.df.append(df_add, ignore_index=True) 
    2433 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2434 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2435 is deprecated and will be removed from pandas in a future version. Use
    2436 pandas.concat instead. 
    2437 self.df = self.df.append(df_add, ignore_index=True) 
    2438 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2439 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2440 is deprecated and will be removed from pandas in a future version. Use
    2441 pandas.concat instead. 
    2442 self.df = self.df.append(df_add, ignore_index=True) 
    2443 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2444 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2445 is deprecated and will be removed from pandas in a future version. Use
    2446 pandas.concat instead. 
    2447 self.df = self.df.append(df_add, ignore_index=True) 
    2448 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2449 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2450 is deprecated and will be removed from pandas in a future version. Use
    2451 pandas.concat instead. 
    2452 self.df = self.df.append(df_add, ignore_index=True) 
    2453 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2454 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2455 is deprecated and will be removed from pandas in a future version. Use
    2456 pandas.concat instead. 
    2457 self.df = self.df.append(df_add, ignore_index=True) 
    2458 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2459 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2460 is deprecated and will be removed from pandas in a future version. Use
    2461 pandas.concat instead. 
    2462 self.df = self.df.append(df_add, ignore_index=True) 
    2463 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2464 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2465 is deprecated and will be removed from pandas in a future version. Use
    2466 pandas.concat instead. 
    2467 self.df = self.df.append(df_add, ignore_index=True) 
    2468 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2469 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2470 is deprecated and will be removed from pandas in a future version. Use
    2471 pandas.concat instead. 
    2472 self.df = self.df.append(df_add, ignore_index=True) 
    2473 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2474 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2475 is deprecated and will be removed from pandas in a future version. Use
    2476 pandas.concat instead. 
    2477 self.df = self.df.append(df_add, ignore_index=True) 
    2478 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2479 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2480 is deprecated and will be removed from pandas in a future version. Use
    2481 pandas.concat instead. 
    2482 self.df = self.df.append(df_add, ignore_index=True) 
    2483 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2484 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2485 is deprecated and will be removed from pandas in a future version. Use
    2486 pandas.concat instead. 
    2487 self.df = self.df.append(df_add, ignore_index=True) 
    2488 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2489 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2490 is deprecated and will be removed from pandas in a future version. Use
    2491 pandas.concat instead. 
    2492 self.df = self.df.append(df_add, ignore_index=True) 
    2493 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2494 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2495 is deprecated and will be removed from pandas in a future version. Use
    2496 pandas.concat instead. 
    2497 self.df = self.df.append(df_add, ignore_index=True) 
    2498 Pseudobonds are stored in
    2499 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.pb 
    2500 Mapping information is stored in
    2501 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.tsv 
    2502 Please select pseudobonds 
    2503 Traceback (most recent call last): 
    2504 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2505 packages\chimerax\xmas\tool.py", line 252, in <lambda> 
    2506 self.uncheck(button, checked, 
    2507 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2508 packages\chimerax\xmas\tool.py", line 308, in uncheck 
    2509 self.color_gradient(checked, pbs, button.policy, reset_values) 
    2510 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2511 packages\chimerax\xmas\tool.py", line 453, in color_gradient 
    2512 color_key.delete() 
    2513 File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
    2514 packages\chimerax\color_key\model.py", line 91, in delete 
    2515 self.session.main_view.remove_overlays([self], delete = False) 
    2516 AttributeError: 'NoneType' object has no attribute 'main_view' 
    2517  
    2518 AttributeError: 'NoneType' object has no attribute 'main_view' 
    2519  
    2520 File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
    2521 packages\chimerax\color_key\model.py", line 91, in delete 
    2522 self.session.main_view.remove_overlays([self], delete = False) 
    2523  
    2524 See log for complete Python traceback. 
    2525  
    2526 
    2527 > close #3
    2528 
    2529 > ui tool show XMAS
    2530 
    2531  
    2532 Peptide pair mapping of PD evidence file:
    2533 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx 
    2534 Unique peptide pairs: 155 out of 155 
    2535 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2536 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2537 is deprecated and will be removed from pandas in a future version. Use
    2538 pandas.concat instead. 
    2539 self.df = self.df.append(df_add, ignore_index=True) 
    2540 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2541 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2542 is deprecated and will be removed from pandas in a future version. Use
    2543 pandas.concat instead. 
    2544 self.df = self.df.append(df_add, ignore_index=True) 
    2545 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2546 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2547 is deprecated and will be removed from pandas in a future version. Use
    2548 pandas.concat instead. 
    2549 self.df = self.df.append(df_add, ignore_index=True) 
    2550 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2551 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2552 is deprecated and will be removed from pandas in a future version. Use
    2553 pandas.concat instead. 
    2554 self.df = self.df.append(df_add, ignore_index=True) 
    2555 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2556 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2557 is deprecated and will be removed from pandas in a future version. Use
    2558 pandas.concat instead. 
    2559 self.df = self.df.append(df_add, ignore_index=True) 
    2560 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2561 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2562 is deprecated and will be removed from pandas in a future version. Use
    2563 pandas.concat instead. 
    2564 self.df = self.df.append(df_add, ignore_index=True) 
    2565 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2566 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2567 is deprecated and will be removed from pandas in a future version. Use
    2568 pandas.concat instead. 
    2569 self.df = self.df.append(df_add, ignore_index=True) 
    2570 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2571 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2572 is deprecated and will be removed from pandas in a future version. Use
    2573 pandas.concat instead. 
    2574 self.df = self.df.append(df_add, ignore_index=True) 
    2575 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2576 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2577 is deprecated and will be removed from pandas in a future version. Use
    2578 pandas.concat instead. 
    2579 self.df = self.df.append(df_add, ignore_index=True) 
    2580 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2581 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2582 is deprecated and will be removed from pandas in a future version. Use
    2583 pandas.concat instead. 
    2584 self.df = self.df.append(df_add, ignore_index=True) 
    2585 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2586 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2587 is deprecated and will be removed from pandas in a future version. Use
    2588 pandas.concat instead. 
    2589 self.df = self.df.append(df_add, ignore_index=True) 
    2590 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2591 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2592 is deprecated and will be removed from pandas in a future version. Use
    2593 pandas.concat instead. 
    2594 self.df = self.df.append(df_add, ignore_index=True) 
    2595 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2596 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2597 is deprecated and will be removed from pandas in a future version. Use
    2598 pandas.concat instead. 
    2599 self.df = self.df.append(df_add, ignore_index=True) 
    2600 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2601 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2602 is deprecated and will be removed from pandas in a future version. Use
    2603 pandas.concat instead. 
    2604 self.df = self.df.append(df_add, ignore_index=True) 
    2605 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2606 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2607 is deprecated and will be removed from pandas in a future version. Use
    2608 pandas.concat instead. 
    2609 self.df = self.df.append(df_add, ignore_index=True) 
    2610 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2611 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2612 is deprecated and will be removed from pandas in a future version. Use
    2613 pandas.concat instead. 
    2614 self.df = self.df.append(df_add, ignore_index=True) 
    2615 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2616 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2617 is deprecated and will be removed from pandas in a future version. Use
    2618 pandas.concat instead. 
    2619 self.df = self.df.append(df_add, ignore_index=True) 
    2620 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2621 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2622 is deprecated and will be removed from pandas in a future version. Use
    2623 pandas.concat instead. 
    2624 self.df = self.df.append(df_add, ignore_index=True) 
    2625 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2626 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2627 is deprecated and will be removed from pandas in a future version. Use
    2628 pandas.concat instead. 
    2629 self.df = self.df.append(df_add, ignore_index=True) 
    2630 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2631 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2632 is deprecated and will be removed from pandas in a future version. Use
    2633 pandas.concat instead. 
    2634 self.df = self.df.append(df_add, ignore_index=True) 
    2635 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2636 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2637 is deprecated and will be removed from pandas in a future version. Use
    2638 pandas.concat instead. 
    2639 self.df = self.df.append(df_add, ignore_index=True) 
    2640 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2641 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2642 is deprecated and will be removed from pandas in a future version. Use
    2643 pandas.concat instead. 
    2644 self.df = self.df.append(df_add, ignore_index=True) 
    2645 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2646 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2647 is deprecated and will be removed from pandas in a future version. Use
    2648 pandas.concat instead. 
    2649 self.df = self.df.append(df_add, ignore_index=True) 
    2650 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2651 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2652 is deprecated and will be removed from pandas in a future version. Use
    2653 pandas.concat instead. 
    2654 self.df = self.df.append(df_add, ignore_index=True) 
    2655 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2656 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2657 is deprecated and will be removed from pandas in a future version. Use
    2658 pandas.concat instead. 
    2659 self.df = self.df.append(df_add, ignore_index=True) 
    2660 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2661 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2662 is deprecated and will be removed from pandas in a future version. Use
    2663 pandas.concat instead. 
    2664 self.df = self.df.append(df_add, ignore_index=True) 
    2665 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2666 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2667 is deprecated and will be removed from pandas in a future version. Use
    2668 pandas.concat instead. 
    2669 self.df = self.df.append(df_add, ignore_index=True) 
    2670 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2671 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2672 is deprecated and will be removed from pandas in a future version. Use
    2673 pandas.concat instead. 
    2674 self.df = self.df.append(df_add, ignore_index=True) 
    2675 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2676 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2677 is deprecated and will be removed from pandas in a future version. Use
    2678 pandas.concat instead. 
    2679 self.df = self.df.append(df_add, ignore_index=True) 
    2680 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2681 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2682 is deprecated and will be removed from pandas in a future version. Use
    2683 pandas.concat instead. 
    2684 self.df = self.df.append(df_add, ignore_index=True) 
    2685 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2686 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2687 is deprecated and will be removed from pandas in a future version. Use
    2688 pandas.concat instead. 
    2689 self.df = self.df.append(df_add, ignore_index=True) 
    2690 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2691 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2692 is deprecated and will be removed from pandas in a future version. Use
    2693 pandas.concat instead. 
    2694 self.df = self.df.append(df_add, ignore_index=True) 
    2695 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2696 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2697 is deprecated and will be removed from pandas in a future version. Use
    2698 pandas.concat instead. 
    2699 self.df = self.df.append(df_add, ignore_index=True) 
    2700 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2701 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2702 is deprecated and will be removed from pandas in a future version. Use
    2703 pandas.concat instead. 
    2704 self.df = self.df.append(df_add, ignore_index=True) 
    2705 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2706 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2707 is deprecated and will be removed from pandas in a future version. Use
    2708 pandas.concat instead. 
    2709 self.df = self.df.append(df_add, ignore_index=True) 
    2710 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2711 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2712 is deprecated and will be removed from pandas in a future version. Use
    2713 pandas.concat instead. 
    2714 self.df = self.df.append(df_add, ignore_index=True) 
    2715 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2716 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2717 is deprecated and will be removed from pandas in a future version. Use
    2718 pandas.concat instead. 
    2719 self.df = self.df.append(df_add, ignore_index=True) 
    2720 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2721 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2722 is deprecated and will be removed from pandas in a future version. Use
    2723 pandas.concat instead. 
    2724 self.df = self.df.append(df_add, ignore_index=True) 
    2725 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2726 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2727 is deprecated and will be removed from pandas in a future version. Use
    2728 pandas.concat instead. 
    2729 self.df = self.df.append(df_add, ignore_index=True) 
    2730 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2731 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2732 is deprecated and will be removed from pandas in a future version. Use
    2733 pandas.concat instead. 
    2734 self.df = self.df.append(df_add, ignore_index=True) 
    2735 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2736 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2737 is deprecated and will be removed from pandas in a future version. Use
    2738 pandas.concat instead. 
    2739 self.df = self.df.append(df_add, ignore_index=True) 
    2740 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2741 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2742 is deprecated and will be removed from pandas in a future version. Use
    2743 pandas.concat instead. 
    2744 self.df = self.df.append(df_add, ignore_index=True) 
    2745 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2746 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2747 is deprecated and will be removed from pandas in a future version. Use
    2748 pandas.concat instead. 
    2749 self.df = self.df.append(df_add, ignore_index=True) 
    2750 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2751 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2752 is deprecated and will be removed from pandas in a future version. Use
    2753 pandas.concat instead. 
    2754 self.df = self.df.append(df_add, ignore_index=True) 
    2755 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2756 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2757 is deprecated and will be removed from pandas in a future version. Use
    2758 pandas.concat instead. 
    2759 self.df = self.df.append(df_add, ignore_index=True) 
    2760 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2761 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2762 is deprecated and will be removed from pandas in a future version. Use
    2763 pandas.concat instead. 
    2764 self.df = self.df.append(df_add, ignore_index=True) 
    2765 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2766 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2767 is deprecated and will be removed from pandas in a future version. Use
    2768 pandas.concat instead. 
    2769 self.df = self.df.append(df_add, ignore_index=True) 
    2770 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2771 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2772 is deprecated and will be removed from pandas in a future version. Use
    2773 pandas.concat instead. 
    2774 self.df = self.df.append(df_add, ignore_index=True) 
    2775 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2776 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2777 is deprecated and will be removed from pandas in a future version. Use
    2778 pandas.concat instead. 
    2779 self.df = self.df.append(df_add, ignore_index=True) 
    2780 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2781 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2782 is deprecated and will be removed from pandas in a future version. Use
    2783 pandas.concat instead. 
    2784 self.df = self.df.append(df_add, ignore_index=True) 
    2785 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2786 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2787 is deprecated and will be removed from pandas in a future version. Use
    2788 pandas.concat instead. 
    2789 self.df = self.df.append(df_add, ignore_index=True) 
    2790 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2791 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2792 is deprecated and will be removed from pandas in a future version. Use
    2793 pandas.concat instead. 
    2794 self.df = self.df.append(df_add, ignore_index=True) 
    2795 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2796 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2797 is deprecated and will be removed from pandas in a future version. Use
    2798 pandas.concat instead. 
    2799 self.df = self.df.append(df_add, ignore_index=True) 
    2800 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2801 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2802 is deprecated and will be removed from pandas in a future version. Use
    2803 pandas.concat instead. 
    2804 self.df = self.df.append(df_add, ignore_index=True) 
    2805 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2806 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2807 is deprecated and will be removed from pandas in a future version. Use
    2808 pandas.concat instead. 
    2809 self.df = self.df.append(df_add, ignore_index=True) 
    2810 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2811 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2812 is deprecated and will be removed from pandas in a future version. Use
    2813 pandas.concat instead. 
    2814 self.df = self.df.append(df_add, ignore_index=True) 
    2815 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2816 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2817 is deprecated and will be removed from pandas in a future version. Use
    2818 pandas.concat instead. 
    2819 self.df = self.df.append(df_add, ignore_index=True) 
    2820 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2821 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2822 is deprecated and will be removed from pandas in a future version. Use
    2823 pandas.concat instead. 
    2824 self.df = self.df.append(df_add, ignore_index=True) 
    2825 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2826 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2827 is deprecated and will be removed from pandas in a future version. Use
    2828 pandas.concat instead. 
    2829 self.df = self.df.append(df_add, ignore_index=True) 
    2830 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2831 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2832 is deprecated and will be removed from pandas in a future version. Use
    2833 pandas.concat instead. 
    2834 self.df = self.df.append(df_add, ignore_index=True) 
    2835 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2836 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2837 is deprecated and will be removed from pandas in a future version. Use
    2838 pandas.concat instead. 
    2839 self.df = self.df.append(df_add, ignore_index=True) 
    2840 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2841 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2842 is deprecated and will be removed from pandas in a future version. Use
    2843 pandas.concat instead. 
    2844 self.df = self.df.append(df_add, ignore_index=True) 
    2845 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2846 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2847 is deprecated and will be removed from pandas in a future version. Use
    2848 pandas.concat instead. 
    2849 self.df = self.df.append(df_add, ignore_index=True) 
    2850 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2851 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2852 is deprecated and will be removed from pandas in a future version. Use
    2853 pandas.concat instead. 
    2854 self.df = self.df.append(df_add, ignore_index=True) 
    2855 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2856 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2857 is deprecated and will be removed from pandas in a future version. Use
    2858 pandas.concat instead. 
    2859 self.df = self.df.append(df_add, ignore_index=True) 
    2860 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2861 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2862 is deprecated and will be removed from pandas in a future version. Use
    2863 pandas.concat instead. 
    2864 self.df = self.df.append(df_add, ignore_index=True) 
    2865 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2866 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2867 is deprecated and will be removed from pandas in a future version. Use
    2868 pandas.concat instead. 
    2869 self.df = self.df.append(df_add, ignore_index=True) 
    2870 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2871 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2872 is deprecated and will be removed from pandas in a future version. Use
    2873 pandas.concat instead. 
    2874 self.df = self.df.append(df_add, ignore_index=True) 
    2875 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2876 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2877 is deprecated and will be removed from pandas in a future version. Use
    2878 pandas.concat instead. 
    2879 self.df = self.df.append(df_add, ignore_index=True) 
    2880 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2881 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2882 is deprecated and will be removed from pandas in a future version. Use
    2883 pandas.concat instead. 
    2884 self.df = self.df.append(df_add, ignore_index=True) 
    2885 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2886 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2887 is deprecated and will be removed from pandas in a future version. Use
    2888 pandas.concat instead. 
    2889 self.df = self.df.append(df_add, ignore_index=True) 
    2890 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2891 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2892 is deprecated and will be removed from pandas in a future version. Use
    2893 pandas.concat instead. 
    2894 self.df = self.df.append(df_add, ignore_index=True) 
    2895 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2896 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2897 is deprecated and will be removed from pandas in a future version. Use
    2898 pandas.concat instead. 
    2899 self.df = self.df.append(df_add, ignore_index=True) 
    2900 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2901 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2902 is deprecated and will be removed from pandas in a future version. Use
    2903 pandas.concat instead. 
    2904 self.df = self.df.append(df_add, ignore_index=True) 
    2905 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2906 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2907 is deprecated and will be removed from pandas in a future version. Use
    2908 pandas.concat instead. 
    2909 self.df = self.df.append(df_add, ignore_index=True) 
    2910 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2911 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2912 is deprecated and will be removed from pandas in a future version. Use
    2913 pandas.concat instead. 
    2914 self.df = self.df.append(df_add, ignore_index=True) 
    2915 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2916 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2917 is deprecated and will be removed from pandas in a future version. Use
    2918 pandas.concat instead. 
    2919 self.df = self.df.append(df_add, ignore_index=True) 
    2920 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2921 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2922 is deprecated and will be removed from pandas in a future version. Use
    2923 pandas.concat instead. 
    2924 self.df = self.df.append(df_add, ignore_index=True) 
    2925 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2926 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2927 is deprecated and will be removed from pandas in a future version. Use
    2928 pandas.concat instead. 
    2929 self.df = self.df.append(df_add, ignore_index=True) 
    2930 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2931 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2932 is deprecated and will be removed from pandas in a future version. Use
    2933 pandas.concat instead. 
    2934 self.df = self.df.append(df_add, ignore_index=True) 
    2935 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2936 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2937 is deprecated and will be removed from pandas in a future version. Use
    2938 pandas.concat instead. 
    2939 self.df = self.df.append(df_add, ignore_index=True) 
    2940 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2941 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2942 is deprecated and will be removed from pandas in a future version. Use
    2943 pandas.concat instead. 
    2944 self.df = self.df.append(df_add, ignore_index=True) 
    2945 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2946 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2947 is deprecated and will be removed from pandas in a future version. Use
    2948 pandas.concat instead. 
    2949 self.df = self.df.append(df_add, ignore_index=True) 
    2950 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2951 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2952 is deprecated and will be removed from pandas in a future version. Use
    2953 pandas.concat instead. 
    2954 self.df = self.df.append(df_add, ignore_index=True) 
    2955 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2956 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2957 is deprecated and will be removed from pandas in a future version. Use
    2958 pandas.concat instead. 
    2959 self.df = self.df.append(df_add, ignore_index=True) 
    2960 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2961 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2962 is deprecated and will be removed from pandas in a future version. Use
    2963 pandas.concat instead. 
    2964 self.df = self.df.append(df_add, ignore_index=True) 
    2965 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2966 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2967 is deprecated and will be removed from pandas in a future version. Use
    2968 pandas.concat instead. 
    2969 self.df = self.df.append(df_add, ignore_index=True) 
    2970 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2971 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2972 is deprecated and will be removed from pandas in a future version. Use
    2973 pandas.concat instead. 
    2974 self.df = self.df.append(df_add, ignore_index=True) 
    2975 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2976 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2977 is deprecated and will be removed from pandas in a future version. Use
    2978 pandas.concat instead. 
    2979 self.df = self.df.append(df_add, ignore_index=True) 
    2980 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2981 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2982 is deprecated and will be removed from pandas in a future version. Use
    2983 pandas.concat instead. 
    2984 self.df = self.df.append(df_add, ignore_index=True) 
    2985 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2986 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2987 is deprecated and will be removed from pandas in a future version. Use
    2988 pandas.concat instead. 
    2989 self.df = self.df.append(df_add, ignore_index=True) 
    2990 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2991 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2992 is deprecated and will be removed from pandas in a future version. Use
    2993 pandas.concat instead. 
    2994 self.df = self.df.append(df_add, ignore_index=True) 
    2995 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    2996 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    2997 is deprecated and will be removed from pandas in a future version. Use
    2998 pandas.concat instead. 
    2999 self.df = self.df.append(df_add, ignore_index=True) 
    3000 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3001 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3002 is deprecated and will be removed from pandas in a future version. Use
    3003 pandas.concat instead. 
    3004 self.df = self.df.append(df_add, ignore_index=True) 
    3005 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3006 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3007 is deprecated and will be removed from pandas in a future version. Use
    3008 pandas.concat instead. 
    3009 self.df = self.df.append(df_add, ignore_index=True) 
    3010 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3011 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3012 is deprecated and will be removed from pandas in a future version. Use
    3013 pandas.concat instead. 
    3014 self.df = self.df.append(df_add, ignore_index=True) 
    3015 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3016 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3017 is deprecated and will be removed from pandas in a future version. Use
    3018 pandas.concat instead. 
    3019 self.df = self.df.append(df_add, ignore_index=True) 
    3020 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3021 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3022 is deprecated and will be removed from pandas in a future version. Use
    3023 pandas.concat instead. 
    3024 self.df = self.df.append(df_add, ignore_index=True) 
    3025 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3026 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3027 is deprecated and will be removed from pandas in a future version. Use
    3028 pandas.concat instead. 
    3029 self.df = self.df.append(df_add, ignore_index=True) 
    3030 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3031 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3032 is deprecated and will be removed from pandas in a future version. Use
    3033 pandas.concat instead. 
    3034 self.df = self.df.append(df_add, ignore_index=True) 
    3035 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3036 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3037 is deprecated and will be removed from pandas in a future version. Use
    3038 pandas.concat instead. 
    3039 self.df = self.df.append(df_add, ignore_index=True) 
    3040 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3041 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3042 is deprecated and will be removed from pandas in a future version. Use
    3043 pandas.concat instead. 
    3044 self.df = self.df.append(df_add, ignore_index=True) 
    3045 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3046 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3047 is deprecated and will be removed from pandas in a future version. Use
    3048 pandas.concat instead. 
    3049 self.df = self.df.append(df_add, ignore_index=True) 
    3050 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3051 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3052 is deprecated and will be removed from pandas in a future version. Use
    3053 pandas.concat instead. 
    3054 self.df = self.df.append(df_add, ignore_index=True) 
    3055 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3056 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3057 is deprecated and will be removed from pandas in a future version. Use
    3058 pandas.concat instead. 
    3059 self.df = self.df.append(df_add, ignore_index=True) 
    3060 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3061 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3062 is deprecated and will be removed from pandas in a future version. Use
    3063 pandas.concat instead. 
    3064 self.df = self.df.append(df_add, ignore_index=True) 
    3065 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3066 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3067 is deprecated and will be removed from pandas in a future version. Use
    3068 pandas.concat instead. 
    3069 self.df = self.df.append(df_add, ignore_index=True) 
    3070 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3071 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3072 is deprecated and will be removed from pandas in a future version. Use
    3073 pandas.concat instead. 
    3074 self.df = self.df.append(df_add, ignore_index=True) 
    3075 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3076 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3077 is deprecated and will be removed from pandas in a future version. Use
    3078 pandas.concat instead. 
    3079 self.df = self.df.append(df_add, ignore_index=True) 
    3080 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3081 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3082 is deprecated and will be removed from pandas in a future version. Use
    3083 pandas.concat instead. 
    3084 self.df = self.df.append(df_add, ignore_index=True) 
    3085 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3086 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3087 is deprecated and will be removed from pandas in a future version. Use
    3088 pandas.concat instead. 
    3089 self.df = self.df.append(df_add, ignore_index=True) 
    3090 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3091 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3092 is deprecated and will be removed from pandas in a future version. Use
    3093 pandas.concat instead. 
    3094 self.df = self.df.append(df_add, ignore_index=True) 
    3095 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3096 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3097 is deprecated and will be removed from pandas in a future version. Use
    3098 pandas.concat instead. 
    3099 self.df = self.df.append(df_add, ignore_index=True) 
    3100 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3101 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3102 is deprecated and will be removed from pandas in a future version. Use
    3103 pandas.concat instead. 
    3104 self.df = self.df.append(df_add, ignore_index=True) 
    3105 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3106 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3107 is deprecated and will be removed from pandas in a future version. Use
    3108 pandas.concat instead. 
    3109 self.df = self.df.append(df_add, ignore_index=True) 
    3110 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3111 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3112 is deprecated and will be removed from pandas in a future version. Use
    3113 pandas.concat instead. 
    3114 self.df = self.df.append(df_add, ignore_index=True) 
    3115 Unique peptide pairs with pseudobonds: 39 
    3116 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3117 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3118 is deprecated and will be removed from pandas in a future version. Use
    3119 pandas.concat instead. 
    3120 self.df = self.df.append(df_add, ignore_index=True) 
    3121 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3122 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3123 is deprecated and will be removed from pandas in a future version. Use
    3124 pandas.concat instead. 
    3125 self.df = self.df.append(df_add, ignore_index=True) 
    3126 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3127 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3128 is deprecated and will be removed from pandas in a future version. Use
    3129 pandas.concat instead. 
    3130 self.df = self.df.append(df_add, ignore_index=True) 
    3131 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3132 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3133 is deprecated and will be removed from pandas in a future version. Use
    3134 pandas.concat instead. 
    3135 self.df = self.df.append(df_add, ignore_index=True) 
    3136 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3137 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3138 is deprecated and will be removed from pandas in a future version. Use
    3139 pandas.concat instead. 
    3140 self.df = self.df.append(df_add, ignore_index=True) 
    3141 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3142 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3143 is deprecated and will be removed from pandas in a future version. Use
    3144 pandas.concat instead. 
    3145 self.df = self.df.append(df_add, ignore_index=True) 
    3146 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3147 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3148 is deprecated and will be removed from pandas in a future version. Use
    3149 pandas.concat instead. 
    3150 self.df = self.df.append(df_add, ignore_index=True) 
    3151 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3152 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3153 is deprecated and will be removed from pandas in a future version. Use
    3154 pandas.concat instead. 
    3155 self.df = self.df.append(df_add, ignore_index=True) 
    3156 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3157 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3158 is deprecated and will be removed from pandas in a future version. Use
    3159 pandas.concat instead. 
    3160 self.df = self.df.append(df_add, ignore_index=True) 
    3161 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3162 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3163 is deprecated and will be removed from pandas in a future version. Use
    3164 pandas.concat instead. 
    3165 self.df = self.df.append(df_add, ignore_index=True) 
    3166 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3167 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3168 is deprecated and will be removed from pandas in a future version. Use
    3169 pandas.concat instead. 
    3170 self.df = self.df.append(df_add, ignore_index=True) 
    3171 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3172 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3173 is deprecated and will be removed from pandas in a future version. Use
    3174 pandas.concat instead. 
    3175 self.df = self.df.append(df_add, ignore_index=True) 
    3176 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3177 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3178 is deprecated and will be removed from pandas in a future version. Use
    3179 pandas.concat instead. 
    3180 self.df = self.df.append(df_add, ignore_index=True) 
    3181 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3182 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3183 is deprecated and will be removed from pandas in a future version. Use
    3184 pandas.concat instead. 
    3185 self.df = self.df.append(df_add, ignore_index=True) 
    3186 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3187 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3188 is deprecated and will be removed from pandas in a future version. Use
    3189 pandas.concat instead. 
    3190 self.df = self.df.append(df_add, ignore_index=True) 
    3191 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3192 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3193 is deprecated and will be removed from pandas in a future version. Use
    3194 pandas.concat instead. 
    3195 self.df = self.df.append(df_add, ignore_index=True) 
    3196 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3197 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3198 is deprecated and will be removed from pandas in a future version. Use
    3199 pandas.concat instead. 
    3200 self.df = self.df.append(df_add, ignore_index=True) 
    3201 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3202 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3203 is deprecated and will be removed from pandas in a future version. Use
    3204 pandas.concat instead. 
    3205 self.df = self.df.append(df_add, ignore_index=True) 
    3206 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3207 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3208 is deprecated and will be removed from pandas in a future version. Use
    3209 pandas.concat instead. 
    3210 self.df = self.df.append(df_add, ignore_index=True) 
    3211 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3212 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3213 is deprecated and will be removed from pandas in a future version. Use
    3214 pandas.concat instead. 
    3215 self.df = self.df.append(df_add, ignore_index=True) 
    3216 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3217 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3218 is deprecated and will be removed from pandas in a future version. Use
    3219 pandas.concat instead. 
    3220 self.df = self.df.append(df_add, ignore_index=True) 
    3221 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3222 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3223 is deprecated and will be removed from pandas in a future version. Use
    3224 pandas.concat instead. 
    3225 self.df = self.df.append(df_add, ignore_index=True) 
    3226 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3227 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3228 is deprecated and will be removed from pandas in a future version. Use
    3229 pandas.concat instead. 
    3230 self.df = self.df.append(df_add, ignore_index=True) 
    3231 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3232 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3233 is deprecated and will be removed from pandas in a future version. Use
    3234 pandas.concat instead. 
    3235 self.df = self.df.append(df_add, ignore_index=True) 
    3236 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3237 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3238 is deprecated and will be removed from pandas in a future version. Use
    3239 pandas.concat instead. 
    3240 self.df = self.df.append(df_add, ignore_index=True) 
    3241 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3242 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3243 is deprecated and will be removed from pandas in a future version. Use
    3244 pandas.concat instead. 
    3245 self.df = self.df.append(df_add, ignore_index=True) 
    3246 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3247 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3248 is deprecated and will be removed from pandas in a future version. Use
    3249 pandas.concat instead. 
    3250 self.df = self.df.append(df_add, ignore_index=True) 
    3251 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3252 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3253 is deprecated and will be removed from pandas in a future version. Use
    3254 pandas.concat instead. 
    3255 self.df = self.df.append(df_add, ignore_index=True) 
    3256 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3257 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3258 is deprecated and will be removed from pandas in a future version. Use
    3259 pandas.concat instead. 
    3260 self.df = self.df.append(df_add, ignore_index=True) 
    3261 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3262 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3263 is deprecated and will be removed from pandas in a future version. Use
    3264 pandas.concat instead. 
    3265 self.df = self.df.append(df_add, ignore_index=True) 
    3266 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3267 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3268 is deprecated and will be removed from pandas in a future version. Use
    3269 pandas.concat instead. 
    3270 self.df = self.df.append(df_add, ignore_index=True) 
    3271 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3272 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3273 is deprecated and will be removed from pandas in a future version. Use
    3274 pandas.concat instead. 
    3275 self.df = self.df.append(df_add, ignore_index=True) 
    3276 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3277 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3278 is deprecated and will be removed from pandas in a future version. Use
    3279 pandas.concat instead. 
    3280 self.df = self.df.append(df_add, ignore_index=True) 
    3281 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3282 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3283 is deprecated and will be removed from pandas in a future version. Use
    3284 pandas.concat instead. 
    3285 self.df = self.df.append(df_add, ignore_index=True) 
    3286 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3287 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3288 is deprecated and will be removed from pandas in a future version. Use
    3289 pandas.concat instead. 
    3290 self.df = self.df.append(df_add, ignore_index=True) 
    3291 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3292 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3293 is deprecated and will be removed from pandas in a future version. Use
    3294 pandas.concat instead. 
    3295 self.df = self.df.append(df_add, ignore_index=True) 
    3296 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3297 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3298 is deprecated and will be removed from pandas in a future version. Use
    3299 pandas.concat instead. 
    3300 self.df = self.df.append(df_add, ignore_index=True) 
    3301 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3302 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3303 is deprecated and will be removed from pandas in a future version. Use
    3304 pandas.concat instead. 
    3305 self.df = self.df.append(df_add, ignore_index=True) 
    3306 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3307 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3308 is deprecated and will be removed from pandas in a future version. Use
    3309 pandas.concat instead. 
    3310 self.df = self.df.append(df_add, ignore_index=True) 
    3311 Pseudobonds are stored in
    3312 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.pb 
    3313 Mapping information is stored in
    3314 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.tsv 
    3315 Please select pseudobonds 
    3316 
    3317 > ui tool show XMAS
    3318 
    3319 > ui mousemode right "rotate selected models"
    3320 
    3321 > view matrix models #3,1,0,0,0,0,1,0,0,0,0,1,0
    3322 
    3323 > select #2
    3324 
    3325 3241 atoms, 2969 bonds, 16 pseudobonds, 708 residues, 3 models selected 
    3326 
    3327 > view matrix models
    3328 > #2,-0.22616,-0.9229,-0.31163,67.531,0.84622,-0.027692,-0.53212,-31.419,0.48246,-0.38405,0.78723,-23.227
    3329 
    3330 > ui mousemode right "translate selected models"
    3331 
    3332 > view matrix models
    3333 > #2,-0.22616,-0.9229,-0.31163,78.509,0.84622,-0.027692,-0.53212,-37.447,0.48246,-0.38405,0.78723,-26.903
    3334 
    3335 > ui mousemode right "rotate selected models"
    3336 
    3337 > view matrix models
    3338 > #2,-0.014795,-0.99593,-0.088926,77.211,0.28716,0.080957,-0.95446,-31.363,0.95777,-0.039657,0.28479,-45.776
    3339 
    3340 > view matrix models
    3341 > #2,-0.81938,-0.30667,-0.48433,69.88,0.57306,-0.46051,-0.67789,-19.679,-0.015156,-0.833,0.55307,-4.8349
    3342 
    3343 > view matrix models
    3344 > #2,0.50182,-0.30548,-0.80923,47.004,0.82109,0.46244,0.3346,-51.479,0.27201,-0.83236,0.48289,-9.8183
    3345 
    3346 > view matrix models
    3347 > #2,0.58532,-0.52718,-0.61602,52.404,0.80693,0.45293,0.3791,-50.924,0.079156,-0.71898,0.69051,-9.8501
    3348 
    3349 > view matrix models
    3350 > #2,0.53264,0.065373,-0.84381,35.188,-0.22497,-0.95021,-0.21562,9.1303,-0.81589,0.30468,-0.49142,-26.181
    3351 
    3352 > view matrix models
    3353 > #2,0.41022,-0.2681,-0.87169,47.409,-0.90862,-0.2022,-0.36541,-1.9397,-0.078286,0.94193,-0.32655,-58.125
    3354 
    3355 > view matrix models
    3356 > #2,0.34364,-0.20464,-0.91653,46.602,-0.92054,-0.26647,-0.28565,0.25769,-0.18577,0.94187,-0.27995,-56.255
    3357 
    3358 > ui mousemode right "translate selected models"
    3359 
    3360 > view matrix models
    3361 > #2,0.34364,-0.20464,-0.91653,51.924,-0.92054,-0.26647,-0.28565,6.0555,-0.18577,0.94187,-0.27995,-38.395
    3362 
    3363 > view matrix models
    3364 > #2,0.34364,-0.20464,-0.91653,33.33,-0.92054,-0.26647,-0.28565,-15.226,-0.18577,0.94187,-0.27995,-46.759
    3365 
    3366 > view matrix models
    3367 > #2,0.34364,-0.20464,-0.91653,42.292,-0.92054,-0.26647,-0.28565,-7.5313,-0.18577,0.94187,-0.27995,-47.934
    3368 
    3369 > ui mousemode right "translate selected atoms"
    3370 
    3371 > ui mousemode right select
    3372 
    3373 Drag select of 6 residues, 1 pseudobonds 
    3374 
    3375 > ui mousemode right "translate selected atoms"
    3376 
    3377 > select #2
    3378 
    3379 3241 atoms, 2969 bonds, 16 pseudobonds, 708 residues, 3 models selected 
    3380 
    3381 > ui mousemode right "translate selected models"
    3382 
    3383 > ui mousemode right "rotate selected models"
    3384 
    3385 > view matrix models
    3386 > #2,-0.92901,0.2952,-0.22317,49.293,-0.046498,0.50517,0.86177,-45.412,0.36713,0.81096,-0.45558,-53.534
    3387 
    3388 > view matrix models
    3389 > #2,0.29859,0.56261,0.77092,20.589,0.94639,-0.070261,-0.31528,-45.554,-0.12322,0.82373,-0.55343,-45.554
    3390 
    3391 > view matrix models
    3392 > #2,0.52067,0.72127,0.45681,11.8,0.85177,-0.40239,-0.3355,-33.848,-0.058173,0.56379,-0.82387,-38.906
    3393 
    3394 > ui mousemode right "translate selected models"
    3395 
    3396 > view matrix models
    3397 > #2,0.52067,0.72127,0.45681,22.275,0.85177,-0.40239,-0.3355,-23.851,-0.058173,0.56379,-0.82387,-31.106
    3398 
    3399 > show sel surfaces
    3400 
    3401 > select #1
    3402 
    3403 10948 atoms, 10741 bonds, 29 pseudobonds, 997 residues, 4 models selected 
    3404 
    3405 > show sel surfaces
    3406 
    3407 > color sel bychain
    3408 
    3409 > coulombic sel
    3410 
    3411 The following residues are missing heavy (non-hydrogen) atoms, which may
    3412 result in inaccurate electrostatics: 
    3413 5mc9 #1/A GLU 2083 
    3414 5mc9 #1/A MET 2084 
    3415 5mc9 #1/A GLN 2085 
    3416 5mc9 #1/A ASN 2087 
    3417 5mc9 #1/A LEU 2088 
    3418 5mc9 #1/A LEU 2089 
    3419 5mc9 #1/A LEU 2090 
    3420 5mc9 #1/A ASP 2091 
    3421 5mc9 #1/A GLU 2101 
    3422 5mc9 #1/A GLU 2232 
    3423 5mc9 #1/A LYS 2267 
    3424 5mc9 #1/A LYS 2288 
    3425 5mc9 #1/A ARG 2368 
    3426 5mc9 #1/A GLU 2438 
    3427 5mc9 #1/A LYS 2439 
    3428 5mc9 #1/A ASP 2538 
    3429 5mc9 #1/A HIS 2548 
    3430 5mc9 #1/A LYS 2623 
    3431 5mc9 #1/A GLU 2637 
    3432 5mc9 #1/A MET 2643 
    3433 5mc9 #1/B LYS 1736 
    3434 5mc9 #1/B LEU 1737 
    3435 5mc9 #1/B GLN 1738 
    3436 5mc9 #1/B LEU 1739 
    3437 5mc9 #1/B LEU 1740 
    3438 5mc9 #1/B GLU 1741 
    3439 5mc9 #1/B ASP 1742 
    3440 5mc9 #1/B LEU 1786 
    3441 5mc9 #1/C ASP 1553 
    3442 5mc9 #1/C ARG 1554 
    3443 5mc9 #1/C LYS 1555 
    3444 5mc9 #1/C VAL 1556 
    3445 5mc9 #1/C SER 1557 
    3446 5mc9 #1/C ASP 1558 
    3447 5mc9 #1/C LEU 1559 
    3448 5mc9 #1/C GLU 1560 
    3449 5mc9 #1/C SER 1561 
    3450 5mc9 #1/C GLU 1605 
    3451 
    3452 Using Amber 20 recommended default charges and atom types for standard
    3453 residues 
    3454 Assigning partial charges to residue HIS (net charge -1) with am1-bcc method 
    3455 Running ANTECHAMBER command: C:/Program Files/ChimeraX
    3456 1.2.5/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i
    3457 C:\Users\Steve021\AppData\Local\Temp\tmpaavfex_5\ante.in.mol2 -fi mol2 -o
    3458 C:\Users\Steve021\AppData\Local\Temp\tmpaavfex_5\ante.out.mol2 -fo mol2 -c bcc
    3459 -nc -1 -j 5 -s 2 -dr n 
    3460 (HIS) `` 
    3461 (HIS) `Welcome to antechamber 20.0: molecular input file processor.` 
    3462 (HIS) `` 
    3463 (HIS) `Info: Finished reading file
    3464 (C:\Users\Steve021\AppData\Local\Temp\tmpaavfex_5\ante.in.mol2); atoms read
    3465 (21), bonds read (20).` 
    3466 (HIS) `Info: Determining atomic numbers from atomic symbols which are case
    3467 sensitive.` 
    3468 (HIS) `Running: C:/Program Files/ChimeraX 1.2.5/bin/amber20/bin/bondtype -j
    3469 part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac` 
    3470 (HIS) `/usr/bin/antechamber: Fatal Error!` 
    3471 (HIS) `Cannot properly run "C:/Program Files/ChimeraX
    3472 1.2.5/bin/amber20/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o
    3473 ANTECHAMBER_BOND_TYPE.AC -f ac".` 
    3474 (HIS) `No such file or directory` 
    3475 Failure running ANTECHAMBER for residue HIS Check reply log for details 
    3476 
    3477 > rainbow sel
    3478 
    3479 > rainbow sel
    3480 
    3481 > select #2
    3482 
    3483 3241 atoms, 2969 bonds, 16 pseudobonds, 708 residues, 3 models selected 
    3484 
    3485 > mlp sel
    3486 
    3487 Map values for surface "2jd4_A SES surface": minimum -29.75, mean -5.73,
    3488 maximum 22.11 
    3489 Map values for surface "2jd4_B SES surface": minimum -14.18, mean -1.848,
    3490 maximum 14.84 
    3491 To also show corresponding color key, enter the above mlp command and add key
    3492 true 
    3493 
    3494 > color sel bychain
    3495 
    3496 > select #1
    3497 
    3498 10948 atoms, 10741 bonds, 29 pseudobonds, 997 residues, 4 models selected 
    3499 
    3500 > color sel bychain
    3501 
    3502 > preset "molecular surfaces" "ghostly white"
    3503 
    3504 Changed 0 atom styles 
    3505 Preset expands to these ChimeraX commands:
    3506 
    3507    
    3508    
    3509     style (protein|nucleic|solvent) & @@draw_mode=0 stick
    3510     surface
    3511     color white targ s trans 80
    3512 
    3513  
    3514 
    3515 > ~select #1
    3516 
    3517 3 models selected 
    3518 
    3519 QWindowsWindow::setGeometry: Unable to set geometry 269x173+1067+705 (frame:
    3520 285x212+1059+674) on QWidgetWindow/"QDockWidgetClassWindow" on
    3521 "\\\\.\DISPLAY193". Resulting geometry: 672x520+1067+705 (frame:
    3522 688x559+1059+674) margins: 8, 31, 8, 8 minimum size: 336x260 maximum size:
    3523 524287x524287 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=688,559
    3524 maxtrack=1048590,1048613) 
    3525 
    3526 > ui mousemode right select
    3527 
    3528 Drag select of 2jd4_B SES surface, 392 of 6316 triangles 
    3529 Drag select of 2jd4_B SES surface, 412 of 6316 triangles 
    3530 Drag select of 2jd4_B SES surface, 412 of 6316 triangles 
    3531 Drag select of 2jd4_B SES surface, 412 of 6316 triangles 
    3532 
    3533 > close #2.4
    3534 
    3535 > select #2
    3536 
    3537 3241 atoms, 2969 bonds, 16 pseudobonds, 708 residues, 3 models selected 
    3538 
    3539 > ui mousemode right "translate selected models"
    3540 
    3541 > view matrix models
    3542 > #2,0.52067,0.72127,0.45681,-12.828,0.85177,-0.40239,-0.3355,-38.038,-0.058173,0.56379,-0.82387,-8.8984
    3543 
    3544 > ui mousemode right "rotate selected models"
    3545 
    3546 > view matrix models
    3547 > #2,0.98192,-0.18842,-0.018256,8.0508,0.18815,0.98202,-0.015269,-70.245,0.020805,0.011558,0.99972,6.0456
    3548 
    3549 > view matrix models
    3550 > #2,0.54776,0.72729,-0.41354,-12.961,0.63935,-0.68269,-0.35378,-25.37,-0.53962,-0.070605,-0.83894,19.767
    3551 
    3552 > view matrix models
    3553 > #2,0.81194,0.55326,0.18615,-12.528,0.54767,-0.61165,-0.57091,-25.852,-0.20201,0.5655,-0.79963,-6.4063
    3554 
    3555 > view matrix models
    3556 > #2,0.27749,0.84092,-0.4646,-11.713,0.94394,-0.14864,0.29475,-48.103,0.1788,-0.52035,-0.83503,21.208
    3557 
    3558 > view matrix models
    3559 > #2,-0.1109,0.90323,-0.41458,-6.801,0.7023,0.36638,0.61036,-60.299,0.70319,-0.22347,-0.67497,2.3733
    3560 
    3561 > view matrix models
    3562 > #2,-0.11265,0.89797,-0.42539,-6.5965,0.70272,0.37468,0.60482,-60.566,0.7025,-0.2308,-0.67323,2.6164
    3563 
    3564 > view matrix models
    3565 > #2,-0.73323,0.59869,-0.32242,13.864,0.61013,0.78857,0.076753,-71.692,0.3002,-0.14044,-0.94348,7.0873
    3566 
    3567 > view matrix models
    3568 > #2,0.31095,0.84993,-0.42536,-12.619,-0.34181,0.51761,0.78438,-46.602,0.88684,-0.098508,0.45146,-5.5516
    3569 
    3570 > view matrix models
    3571 > #2,-0.54263,-0.080439,-0.83611,32.288,-0.61909,-0.63444,0.46283,-4.9953,-0.56769,0.76878,0.29447,-7.0083
    3572 
    3573 > ui mousemode right "translate selected models"
    3574 
    3575 > view matrix models
    3576 > #2,-0.54263,-0.080439,-0.83611,41.919,-0.61909,-0.63444,0.46283,-7.9255,-0.56769,0.76878,0.29447,-27.15
    3577 
    3578 > view matrix models
    3579 > #2,-0.54263,-0.080439,-0.83611,57.128,-0.61909,-0.63444,0.46283,-10.521,-0.56769,0.76878,0.29447,-16.819
    3580 
    3581 > view matrix models
    3582 > #2,-0.54263,-0.080439,-0.83611,70.987,-0.61909,-0.63444,0.46283,-4.0923,-0.56769,0.76878,0.29447,-22.344
    3583 
    3584 > view matrix models
    3585 > #2,-0.54263,-0.080439,-0.83611,73.261,-0.61909,-0.63444,0.46283,-6.4655,-0.56769,0.76878,0.29447,-30.935
    3586 
    3587 > view matrix models
    3588 > #2,-0.54263,-0.080439,-0.83611,74.727,-0.61909,-0.63444,0.46283,-4.6084,-0.56769,0.76878,0.29447,-31.095
    3589 
    3590 > view matrix models
    3591 > #2,-0.54263,-0.080439,-0.83611,80.461,-0.61909,-0.63444,0.46283,-5.8742,-0.56769,0.76878,0.29447,-24.997
    3592 
    3593 > view matrix models
    3594 > #2,-0.54263,-0.080439,-0.83611,25.068,-0.61909,-0.63444,0.46283,-17.278,-0.56769,0.76878,0.29447,-49.626
    3595 
    3596 > view matrix models
    3597 > #2,-0.54263,-0.080439,-0.83611,29.61,-0.61909,-0.63444,0.46283,1.2084,-0.56769,0.76878,0.29447,-45.14
    3598 
    3599 > ui mousemode right "rotate selected models"
    3600 
    3601 > view matrix models
    3602 > #2,-0.61143,0.72966,0.30619,4.4817,0.39518,-0.053673,0.91704,-35.519,0.68556,0.6817,-0.25553,-64.359
    3603 
    3604 > view matrix models
    3605 > #2,-0.85532,-0.28299,-0.43399,41.34,-0.29802,-0.41647,0.85892,-11.655,-0.42381,0.86398,0.27187,-50.702
    3606 
    3607 > view matrix models
    3608 > #2,-0.94868,-0.21251,-0.23418,40.648,-0.22074,-0.085257,0.9716,-23.586,-0.22644,0.97343,0.033973,-57.533
    3609 
    3610 > ui mousemode right "translate selected models"
    3611 
    3612 > view matrix models
    3613 > #2,-0.94868,-0.21251,-0.23418,53.219,-0.22074,-0.085257,0.9716,-15.624,-0.22644,0.97343,0.033973,-56.733
    3614 
    3615 > view matrix models
    3616 > #2,-0.94868,-0.21251,-0.23418,58.564,-0.22074,-0.085257,0.9716,-18.749,-0.22644,0.97343,0.033973,-56.591
    3617 
    3618 > ui mousemode right "rotate selected models"
    3619 
    3620 > view matrix models
    3621 > #2,-0.90434,0.39255,-0.16754,38.579,0.0083293,0.4087,0.91263,-38.428,0.42673,0.82393,-0.37287,-63.237
    3622 
    3623 > ui mousemode right "translate selected models"
    3624 
    3625 > view matrix models
    3626 > #2,-0.90434,0.39255,-0.16754,50.956,0.0083293,0.4087,0.91263,-37.136,0.42673,0.82393,-0.37287,-48.837
    3627 
    3628 > ~select #2
    3629 
    3630 1 model selected 
    3631 Please select pseudobonds 
    3632  
    3633 Peptide pair mapping of PD evidence file:
    3634 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx 
    3635 Unique peptide pairs: 155 out of 155 
    3636 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3637 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3638 is deprecated and will be removed from pandas in a future version. Use
    3639 pandas.concat instead. 
    3640 self.df = self.df.append(df_add, ignore_index=True) 
    3641 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3642 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3643 is deprecated and will be removed from pandas in a future version. Use
    3644 pandas.concat instead. 
    3645 self.df = self.df.append(df_add, ignore_index=True) 
    3646 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3647 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3648 is deprecated and will be removed from pandas in a future version. Use
    3649 pandas.concat instead. 
    3650 self.df = self.df.append(df_add, ignore_index=True) 
    3651 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3652 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3653 is deprecated and will be removed from pandas in a future version. Use
    3654 pandas.concat instead. 
    3655 self.df = self.df.append(df_add, ignore_index=True) 
    3656 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3657 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3658 is deprecated and will be removed from pandas in a future version. Use
    3659 pandas.concat instead. 
    3660 self.df = self.df.append(df_add, ignore_index=True) 
    3661 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3662 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3663 is deprecated and will be removed from pandas in a future version. Use
    3664 pandas.concat instead. 
    3665 self.df = self.df.append(df_add, ignore_index=True) 
    3666 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3667 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3668 is deprecated and will be removed from pandas in a future version. Use
    3669 pandas.concat instead. 
    3670 self.df = self.df.append(df_add, ignore_index=True) 
    3671 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3672 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3673 is deprecated and will be removed from pandas in a future version. Use
    3674 pandas.concat instead. 
    3675 self.df = self.df.append(df_add, ignore_index=True) 
    3676 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3677 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3678 is deprecated and will be removed from pandas in a future version. Use
    3679 pandas.concat instead. 
    3680 self.df = self.df.append(df_add, ignore_index=True) 
    3681 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3682 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3683 is deprecated and will be removed from pandas in a future version. Use
    3684 pandas.concat instead. 
    3685 self.df = self.df.append(df_add, ignore_index=True) 
    3686 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3687 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3688 is deprecated and will be removed from pandas in a future version. Use
    3689 pandas.concat instead. 
    3690 self.df = self.df.append(df_add, ignore_index=True) 
    3691 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3692 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3693 is deprecated and will be removed from pandas in a future version. Use
    3694 pandas.concat instead. 
    3695 self.df = self.df.append(df_add, ignore_index=True) 
    3696 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3697 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3698 is deprecated and will be removed from pandas in a future version. Use
    3699 pandas.concat instead. 
    3700 self.df = self.df.append(df_add, ignore_index=True) 
    3701 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3702 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3703 is deprecated and will be removed from pandas in a future version. Use
    3704 pandas.concat instead. 
    3705 self.df = self.df.append(df_add, ignore_index=True) 
    3706 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3707 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3708 is deprecated and will be removed from pandas in a future version. Use
    3709 pandas.concat instead. 
    3710 self.df = self.df.append(df_add, ignore_index=True) 
    3711 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3712 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3713 is deprecated and will be removed from pandas in a future version. Use
    3714 pandas.concat instead. 
    3715 self.df = self.df.append(df_add, ignore_index=True) 
    3716 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3717 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3718 is deprecated and will be removed from pandas in a future version. Use
    3719 pandas.concat instead. 
    3720 self.df = self.df.append(df_add, ignore_index=True) 
    3721 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3722 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3723 is deprecated and will be removed from pandas in a future version. Use
    3724 pandas.concat instead. 
    3725 self.df = self.df.append(df_add, ignore_index=True) 
    3726 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3727 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3728 is deprecated and will be removed from pandas in a future version. Use
    3729 pandas.concat instead. 
    3730 self.df = self.df.append(df_add, ignore_index=True) 
    3731 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3732 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3733 is deprecated and will be removed from pandas in a future version. Use
    3734 pandas.concat instead. 
    3735 self.df = self.df.append(df_add, ignore_index=True) 
    3736 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3737 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3738 is deprecated and will be removed from pandas in a future version. Use
    3739 pandas.concat instead. 
    3740 self.df = self.df.append(df_add, ignore_index=True) 
    3741 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3742 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3743 is deprecated and will be removed from pandas in a future version. Use
    3744 pandas.concat instead. 
    3745 self.df = self.df.append(df_add, ignore_index=True) 
    3746 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3747 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3748 is deprecated and will be removed from pandas in a future version. Use
    3749 pandas.concat instead. 
    3750 self.df = self.df.append(df_add, ignore_index=True) 
    3751 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3752 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3753 is deprecated and will be removed from pandas in a future version. Use
    3754 pandas.concat instead. 
    3755 self.df = self.df.append(df_add, ignore_index=True) 
    3756 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3757 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3758 is deprecated and will be removed from pandas in a future version. Use
    3759 pandas.concat instead. 
    3760 self.df = self.df.append(df_add, ignore_index=True) 
    3761 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3762 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3763 is deprecated and will be removed from pandas in a future version. Use
    3764 pandas.concat instead. 
    3765 self.df = self.df.append(df_add, ignore_index=True) 
    3766 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3767 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3768 is deprecated and will be removed from pandas in a future version. Use
    3769 pandas.concat instead. 
    3770 self.df = self.df.append(df_add, ignore_index=True) 
    3771 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3772 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3773 is deprecated and will be removed from pandas in a future version. Use
    3774 pandas.concat instead. 
    3775 self.df = self.df.append(df_add, ignore_index=True) 
    3776 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3777 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3778 is deprecated and will be removed from pandas in a future version. Use
    3779 pandas.concat instead. 
    3780 self.df = self.df.append(df_add, ignore_index=True) 
    3781 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3782 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3783 is deprecated and will be removed from pandas in a future version. Use
    3784 pandas.concat instead. 
    3785 self.df = self.df.append(df_add, ignore_index=True) 
    3786 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3787 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3788 is deprecated and will be removed from pandas in a future version. Use
    3789 pandas.concat instead. 
    3790 self.df = self.df.append(df_add, ignore_index=True) 
    3791 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3792 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3793 is deprecated and will be removed from pandas in a future version. Use
    3794 pandas.concat instead. 
    3795 self.df = self.df.append(df_add, ignore_index=True) 
    3796 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3797 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3798 is deprecated and will be removed from pandas in a future version. Use
    3799 pandas.concat instead. 
    3800 self.df = self.df.append(df_add, ignore_index=True) 
    3801 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3802 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3803 is deprecated and will be removed from pandas in a future version. Use
    3804 pandas.concat instead. 
    3805 self.df = self.df.append(df_add, ignore_index=True) 
    3806 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3807 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3808 is deprecated and will be removed from pandas in a future version. Use
    3809 pandas.concat instead. 
    3810 self.df = self.df.append(df_add, ignore_index=True) 
    3811 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3812 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3813 is deprecated and will be removed from pandas in a future version. Use
    3814 pandas.concat instead. 
    3815 self.df = self.df.append(df_add, ignore_index=True) 
    3816 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3817 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3818 is deprecated and will be removed from pandas in a future version. Use
    3819 pandas.concat instead. 
    3820 self.df = self.df.append(df_add, ignore_index=True) 
    3821 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3822 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3823 is deprecated and will be removed from pandas in a future version. Use
    3824 pandas.concat instead. 
    3825 self.df = self.df.append(df_add, ignore_index=True) 
    3826 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3827 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3828 is deprecated and will be removed from pandas in a future version. Use
    3829 pandas.concat instead. 
    3830 self.df = self.df.append(df_add, ignore_index=True) 
    3831 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3832 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3833 is deprecated and will be removed from pandas in a future version. Use
    3834 pandas.concat instead. 
    3835 self.df = self.df.append(df_add, ignore_index=True) 
    3836 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3837 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3838 is deprecated and will be removed from pandas in a future version. Use
    3839 pandas.concat instead. 
    3840 self.df = self.df.append(df_add, ignore_index=True) 
    3841 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3842 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3843 is deprecated and will be removed from pandas in a future version. Use
    3844 pandas.concat instead. 
    3845 self.df = self.df.append(df_add, ignore_index=True) 
    3846 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3847 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3848 is deprecated and will be removed from pandas in a future version. Use
    3849 pandas.concat instead. 
    3850 self.df = self.df.append(df_add, ignore_index=True) 
    3851 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3852 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3853 is deprecated and will be removed from pandas in a future version. Use
    3854 pandas.concat instead. 
    3855 self.df = self.df.append(df_add, ignore_index=True) 
    3856 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3857 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3858 is deprecated and will be removed from pandas in a future version. Use
    3859 pandas.concat instead. 
    3860 self.df = self.df.append(df_add, ignore_index=True) 
    3861 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3862 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3863 is deprecated and will be removed from pandas in a future version. Use
    3864 pandas.concat instead. 
    3865 self.df = self.df.append(df_add, ignore_index=True) 
    3866 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3867 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3868 is deprecated and will be removed from pandas in a future version. Use
    3869 pandas.concat instead. 
    3870 self.df = self.df.append(df_add, ignore_index=True) 
    3871 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3872 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3873 is deprecated and will be removed from pandas in a future version. Use
    3874 pandas.concat instead. 
    3875 self.df = self.df.append(df_add, ignore_index=True) 
    3876 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3877 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3878 is deprecated and will be removed from pandas in a future version. Use
    3879 pandas.concat instead. 
    3880 self.df = self.df.append(df_add, ignore_index=True) 
    3881 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3882 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3883 is deprecated and will be removed from pandas in a future version. Use
    3884 pandas.concat instead. 
    3885 self.df = self.df.append(df_add, ignore_index=True) 
    3886 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3887 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3888 is deprecated and will be removed from pandas in a future version. Use
    3889 pandas.concat instead. 
    3890 self.df = self.df.append(df_add, ignore_index=True) 
    3891 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3892 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3893 is deprecated and will be removed from pandas in a future version. Use
    3894 pandas.concat instead. 
    3895 self.df = self.df.append(df_add, ignore_index=True) 
    3896 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3897 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3898 is deprecated and will be removed from pandas in a future version. Use
    3899 pandas.concat instead. 
    3900 self.df = self.df.append(df_add, ignore_index=True) 
    3901 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3902 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3903 is deprecated and will be removed from pandas in a future version. Use
    3904 pandas.concat instead. 
    3905 self.df = self.df.append(df_add, ignore_index=True) 
    3906 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3907 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3908 is deprecated and will be removed from pandas in a future version. Use
    3909 pandas.concat instead. 
    3910 self.df = self.df.append(df_add, ignore_index=True) 
    3911 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3912 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3913 is deprecated and will be removed from pandas in a future version. Use
    3914 pandas.concat instead. 
    3915 self.df = self.df.append(df_add, ignore_index=True) 
    3916 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3917 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3918 is deprecated and will be removed from pandas in a future version. Use
    3919 pandas.concat instead. 
    3920 self.df = self.df.append(df_add, ignore_index=True) 
    3921 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3922 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3923 is deprecated and will be removed from pandas in a future version. Use
    3924 pandas.concat instead. 
    3925 self.df = self.df.append(df_add, ignore_index=True) 
    3926 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3927 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3928 is deprecated and will be removed from pandas in a future version. Use
    3929 pandas.concat instead. 
    3930 self.df = self.df.append(df_add, ignore_index=True) 
    3931 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3932 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3933 is deprecated and will be removed from pandas in a future version. Use
    3934 pandas.concat instead. 
    3935 self.df = self.df.append(df_add, ignore_index=True) 
    3936 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3937 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3938 is deprecated and will be removed from pandas in a future version. Use
    3939 pandas.concat instead. 
    3940 self.df = self.df.append(df_add, ignore_index=True) 
    3941 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3942 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3943 is deprecated and will be removed from pandas in a future version. Use
    3944 pandas.concat instead. 
    3945 self.df = self.df.append(df_add, ignore_index=True) 
    3946 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3947 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3948 is deprecated and will be removed from pandas in a future version. Use
    3949 pandas.concat instead. 
    3950 self.df = self.df.append(df_add, ignore_index=True) 
    3951 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3952 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3953 is deprecated and will be removed from pandas in a future version. Use
    3954 pandas.concat instead. 
    3955 self.df = self.df.append(df_add, ignore_index=True) 
    3956 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3957 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3958 is deprecated and will be removed from pandas in a future version. Use
    3959 pandas.concat instead. 
    3960 self.df = self.df.append(df_add, ignore_index=True) 
    3961 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3962 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3963 is deprecated and will be removed from pandas in a future version. Use
    3964 pandas.concat instead. 
    3965 self.df = self.df.append(df_add, ignore_index=True) 
    3966 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3967 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3968 is deprecated and will be removed from pandas in a future version. Use
    3969 pandas.concat instead. 
    3970 self.df = self.df.append(df_add, ignore_index=True) 
    3971 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3972 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3973 is deprecated and will be removed from pandas in a future version. Use
    3974 pandas.concat instead. 
    3975 self.df = self.df.append(df_add, ignore_index=True) 
    3976 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3977 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3978 is deprecated and will be removed from pandas in a future version. Use
    3979 pandas.concat instead. 
    3980 self.df = self.df.append(df_add, ignore_index=True) 
    3981 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3982 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3983 is deprecated and will be removed from pandas in a future version. Use
    3984 pandas.concat instead. 
    3985 self.df = self.df.append(df_add, ignore_index=True) 
    3986 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3987 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3988 is deprecated and will be removed from pandas in a future version. Use
    3989 pandas.concat instead. 
    3990 self.df = self.df.append(df_add, ignore_index=True) 
    3991 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3992 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3993 is deprecated and will be removed from pandas in a future version. Use
    3994 pandas.concat instead. 
    3995 self.df = self.df.append(df_add, ignore_index=True) 
    3996 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    3997 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    3998 is deprecated and will be removed from pandas in a future version. Use
    3999 pandas.concat instead. 
    4000 self.df = self.df.append(df_add, ignore_index=True) 
    4001 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4002 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4003 is deprecated and will be removed from pandas in a future version. Use
    4004 pandas.concat instead. 
    4005 self.df = self.df.append(df_add, ignore_index=True) 
    4006 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4007 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4008 is deprecated and will be removed from pandas in a future version. Use
    4009 pandas.concat instead. 
    4010 self.df = self.df.append(df_add, ignore_index=True) 
    4011 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4012 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4013 is deprecated and will be removed from pandas in a future version. Use
    4014 pandas.concat instead. 
    4015 self.df = self.df.append(df_add, ignore_index=True) 
    4016 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4017 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4018 is deprecated and will be removed from pandas in a future version. Use
    4019 pandas.concat instead. 
    4020 self.df = self.df.append(df_add, ignore_index=True) 
    4021 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4022 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4023 is deprecated and will be removed from pandas in a future version. Use
    4024 pandas.concat instead. 
    4025 self.df = self.df.append(df_add, ignore_index=True) 
    4026 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4027 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4028 is deprecated and will be removed from pandas in a future version. Use
    4029 pandas.concat instead. 
    4030 self.df = self.df.append(df_add, ignore_index=True) 
    4031 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4032 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4033 is deprecated and will be removed from pandas in a future version. Use
    4034 pandas.concat instead. 
    4035 self.df = self.df.append(df_add, ignore_index=True) 
    4036 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4037 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4038 is deprecated and will be removed from pandas in a future version. Use
    4039 pandas.concat instead. 
    4040 self.df = self.df.append(df_add, ignore_index=True) 
    4041 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4042 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4043 is deprecated and will be removed from pandas in a future version. Use
    4044 pandas.concat instead. 
    4045 self.df = self.df.append(df_add, ignore_index=True) 
    4046 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4047 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4048 is deprecated and will be removed from pandas in a future version. Use
    4049 pandas.concat instead. 
    4050 self.df = self.df.append(df_add, ignore_index=True) 
    4051 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4052 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4053 is deprecated and will be removed from pandas in a future version. Use
    4054 pandas.concat instead. 
    4055 self.df = self.df.append(df_add, ignore_index=True) 
    4056 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4057 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4058 is deprecated and will be removed from pandas in a future version. Use
    4059 pandas.concat instead. 
    4060 self.df = self.df.append(df_add, ignore_index=True) 
    4061 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4062 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4063 is deprecated and will be removed from pandas in a future version. Use
    4064 pandas.concat instead. 
    4065 self.df = self.df.append(df_add, ignore_index=True) 
    4066 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4067 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4068 is deprecated and will be removed from pandas in a future version. Use
    4069 pandas.concat instead. 
    4070 self.df = self.df.append(df_add, ignore_index=True) 
    4071 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4072 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4073 is deprecated and will be removed from pandas in a future version. Use
    4074 pandas.concat instead. 
    4075 self.df = self.df.append(df_add, ignore_index=True) 
    4076 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4077 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4078 is deprecated and will be removed from pandas in a future version. Use
    4079 pandas.concat instead. 
    4080 self.df = self.df.append(df_add, ignore_index=True) 
    4081 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4082 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4083 is deprecated and will be removed from pandas in a future version. Use
    4084 pandas.concat instead. 
    4085 self.df = self.df.append(df_add, ignore_index=True) 
    4086 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4087 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4088 is deprecated and will be removed from pandas in a future version. Use
    4089 pandas.concat instead. 
    4090 self.df = self.df.append(df_add, ignore_index=True) 
    4091 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4092 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4093 is deprecated and will be removed from pandas in a future version. Use
    4094 pandas.concat instead. 
    4095 self.df = self.df.append(df_add, ignore_index=True) 
    4096 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4097 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4098 is deprecated and will be removed from pandas in a future version. Use
    4099 pandas.concat instead. 
    4100 self.df = self.df.append(df_add, ignore_index=True) 
    4101 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4102 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4103 is deprecated and will be removed from pandas in a future version. Use
    4104 pandas.concat instead. 
    4105 self.df = self.df.append(df_add, ignore_index=True) 
    4106 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4107 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4108 is deprecated and will be removed from pandas in a future version. Use
    4109 pandas.concat instead. 
    4110 self.df = self.df.append(df_add, ignore_index=True) 
    4111 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4112 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4113 is deprecated and will be removed from pandas in a future version. Use
    4114 pandas.concat instead. 
    4115 self.df = self.df.append(df_add, ignore_index=True) 
    4116 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4117 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4118 is deprecated and will be removed from pandas in a future version. Use
    4119 pandas.concat instead. 
    4120 self.df = self.df.append(df_add, ignore_index=True) 
    4121 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4122 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4123 is deprecated and will be removed from pandas in a future version. Use
    4124 pandas.concat instead. 
    4125 self.df = self.df.append(df_add, ignore_index=True) 
    4126 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4127 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4128 is deprecated and will be removed from pandas in a future version. Use
    4129 pandas.concat instead. 
    4130 self.df = self.df.append(df_add, ignore_index=True) 
    4131 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4132 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4133 is deprecated and will be removed from pandas in a future version. Use
    4134 pandas.concat instead. 
    4135 self.df = self.df.append(df_add, ignore_index=True) 
    4136 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4137 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4138 is deprecated and will be removed from pandas in a future version. Use
    4139 pandas.concat instead. 
    4140 self.df = self.df.append(df_add, ignore_index=True) 
    4141 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4142 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4143 is deprecated and will be removed from pandas in a future version. Use
    4144 pandas.concat instead. 
    4145 self.df = self.df.append(df_add, ignore_index=True) 
    4146 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4147 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4148 is deprecated and will be removed from pandas in a future version. Use
    4149 pandas.concat instead. 
    4150 self.df = self.df.append(df_add, ignore_index=True) 
    4151 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4152 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4153 is deprecated and will be removed from pandas in a future version. Use
    4154 pandas.concat instead. 
    4155 self.df = self.df.append(df_add, ignore_index=True) 
    4156 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4157 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4158 is deprecated and will be removed from pandas in a future version. Use
    4159 pandas.concat instead. 
    4160 self.df = self.df.append(df_add, ignore_index=True) 
    4161 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4162 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4163 is deprecated and will be removed from pandas in a future version. Use
    4164 pandas.concat instead. 
    4165 self.df = self.df.append(df_add, ignore_index=True) 
    4166 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4167 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4168 is deprecated and will be removed from pandas in a future version. Use
    4169 pandas.concat instead. 
    4170 self.df = self.df.append(df_add, ignore_index=True) 
    4171 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4172 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4173 is deprecated and will be removed from pandas in a future version. Use
    4174 pandas.concat instead. 
    4175 self.df = self.df.append(df_add, ignore_index=True) 
    4176 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4177 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4178 is deprecated and will be removed from pandas in a future version. Use
    4179 pandas.concat instead. 
    4180 self.df = self.df.append(df_add, ignore_index=True) 
    4181 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4182 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4183 is deprecated and will be removed from pandas in a future version. Use
    4184 pandas.concat instead. 
    4185 self.df = self.df.append(df_add, ignore_index=True) 
    4186 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4187 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4188 is deprecated and will be removed from pandas in a future version. Use
    4189 pandas.concat instead. 
    4190 self.df = self.df.append(df_add, ignore_index=True) 
    4191 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4192 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4193 is deprecated and will be removed from pandas in a future version. Use
    4194 pandas.concat instead. 
    4195 self.df = self.df.append(df_add, ignore_index=True) 
    4196 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4197 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4198 is deprecated and will be removed from pandas in a future version. Use
    4199 pandas.concat instead. 
    4200 self.df = self.df.append(df_add, ignore_index=True) 
    4201 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4202 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4203 is deprecated and will be removed from pandas in a future version. Use
    4204 pandas.concat instead. 
    4205 self.df = self.df.append(df_add, ignore_index=True) 
    4206 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4207 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4208 is deprecated and will be removed from pandas in a future version. Use
    4209 pandas.concat instead. 
    4210 self.df = self.df.append(df_add, ignore_index=True) 
    4211 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4212 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4213 is deprecated and will be removed from pandas in a future version. Use
    4214 pandas.concat instead. 
    4215 self.df = self.df.append(df_add, ignore_index=True) 
    4216 Unique peptide pairs with pseudobonds: 39 
    4217 Traceback (most recent call last): 
    4218 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4219 packages\chimerax\xmas\tool.py", line 142, in <lambda> 
    4220 function = lambda _, s=selector, t=key: self.map_button_clicked(s, 
    4221 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4222 packages\chimerax\xmas\tool.py", line 844, in map_button_clicked 
    4223 self.map_crosslinks(self.checked_models, checked_files) 
    4224 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4225 packages\chimerax\xmas\tool.py", line 1093, in map_crosslinks 
    4226 created_model = self.create_pseudobonds_model(pbonds, 
    4227 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4228 packages\chimerax\xmas\tool.py", line 1124, in create_pseudobonds_model 
    4229 group = self.get_pseudobonds_model(name) 
    4230 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4231 packages\chimerax\xmas\tool.py", line 1180, in get_pseudobonds_model 
    4232 n = re.search("(\d+)", extension) + 1 
    4233 TypeError: unsupported operand type(s) for +: 're.Match' and 'int' 
    4234  
    4235 TypeError: unsupported operand type(s) for +: 're.Match' and 'int' 
    4236  
    4237 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4238 packages\chimerax\xmas\tool.py", line 1180, in get_pseudobonds_model 
    4239 n = re.search("(\d+)", extension) + 1 
    4240  
    4241 See log for complete Python traceback. 
    4242  
    4243 
    4244 > close #4
    4245 
    4246 > close #3
    4247 
    4248  
    4249 Peptide pair mapping of PD evidence file:
    4250 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx 
    4251 Unique peptide pairs: 155 out of 155 
    4252 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4253 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4254 is deprecated and will be removed from pandas in a future version. Use
    4255 pandas.concat instead. 
    4256 self.df = self.df.append(df_add, ignore_index=True) 
    4257 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4258 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4259 is deprecated and will be removed from pandas in a future version. Use
    4260 pandas.concat instead. 
    4261 self.df = self.df.append(df_add, ignore_index=True) 
    4262 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4263 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4264 is deprecated and will be removed from pandas in a future version. Use
    4265 pandas.concat instead. 
    4266 self.df = self.df.append(df_add, ignore_index=True) 
    4267 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4268 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4269 is deprecated and will be removed from pandas in a future version. Use
    4270 pandas.concat instead. 
    4271 self.df = self.df.append(df_add, ignore_index=True) 
    4272 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4273 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4274 is deprecated and will be removed from pandas in a future version. Use
    4275 pandas.concat instead. 
    4276 self.df = self.df.append(df_add, ignore_index=True) 
    4277 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4278 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4279 is deprecated and will be removed from pandas in a future version. Use
    4280 pandas.concat instead. 
    4281 self.df = self.df.append(df_add, ignore_index=True) 
    4282 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4283 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4284 is deprecated and will be removed from pandas in a future version. Use
    4285 pandas.concat instead. 
    4286 self.df = self.df.append(df_add, ignore_index=True) 
    4287 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4288 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4289 is deprecated and will be removed from pandas in a future version. Use
    4290 pandas.concat instead. 
    4291 self.df = self.df.append(df_add, ignore_index=True) 
    4292 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4293 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4294 is deprecated and will be removed from pandas in a future version. Use
    4295 pandas.concat instead. 
    4296 self.df = self.df.append(df_add, ignore_index=True) 
    4297 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4298 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4299 is deprecated and will be removed from pandas in a future version. Use
    4300 pandas.concat instead. 
    4301 self.df = self.df.append(df_add, ignore_index=True) 
    4302 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4303 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4304 is deprecated and will be removed from pandas in a future version. Use
    4305 pandas.concat instead. 
    4306 self.df = self.df.append(df_add, ignore_index=True) 
    4307 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4308 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4309 is deprecated and will be removed from pandas in a future version. Use
    4310 pandas.concat instead. 
    4311 self.df = self.df.append(df_add, ignore_index=True) 
    4312 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4313 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4314 is deprecated and will be removed from pandas in a future version. Use
    4315 pandas.concat instead. 
    4316 self.df = self.df.append(df_add, ignore_index=True) 
    4317 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4318 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4319 is deprecated and will be removed from pandas in a future version. Use
    4320 pandas.concat instead. 
    4321 self.df = self.df.append(df_add, ignore_index=True) 
    4322 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4323 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4324 is deprecated and will be removed from pandas in a future version. Use
    4325 pandas.concat instead. 
    4326 self.df = self.df.append(df_add, ignore_index=True) 
    4327 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4328 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4329 is deprecated and will be removed from pandas in a future version. Use
    4330 pandas.concat instead. 
    4331 self.df = self.df.append(df_add, ignore_index=True) 
    4332 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4333 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4334 is deprecated and will be removed from pandas in a future version. Use
    4335 pandas.concat instead. 
    4336 self.df = self.df.append(df_add, ignore_index=True) 
    4337 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4338 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4339 is deprecated and will be removed from pandas in a future version. Use
    4340 pandas.concat instead. 
    4341 self.df = self.df.append(df_add, ignore_index=True) 
    4342 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4343 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4344 is deprecated and will be removed from pandas in a future version. Use
    4345 pandas.concat instead. 
    4346 self.df = self.df.append(df_add, ignore_index=True) 
    4347 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4348 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4349 is deprecated and will be removed from pandas in a future version. Use
    4350 pandas.concat instead. 
    4351 self.df = self.df.append(df_add, ignore_index=True) 
    4352 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4353 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4354 is deprecated and will be removed from pandas in a future version. Use
    4355 pandas.concat instead. 
    4356 self.df = self.df.append(df_add, ignore_index=True) 
    4357 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4358 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4359 is deprecated and will be removed from pandas in a future version. Use
    4360 pandas.concat instead. 
    4361 self.df = self.df.append(df_add, ignore_index=True) 
    4362 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4363 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4364 is deprecated and will be removed from pandas in a future version. Use
    4365 pandas.concat instead. 
    4366 self.df = self.df.append(df_add, ignore_index=True) 
    4367 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4368 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4369 is deprecated and will be removed from pandas in a future version. Use
    4370 pandas.concat instead. 
    4371 self.df = self.df.append(df_add, ignore_index=True) 
    4372 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4373 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4374 is deprecated and will be removed from pandas in a future version. Use
    4375 pandas.concat instead. 
    4376 self.df = self.df.append(df_add, ignore_index=True) 
    4377 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4378 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4379 is deprecated and will be removed from pandas in a future version. Use
    4380 pandas.concat instead. 
    4381 self.df = self.df.append(df_add, ignore_index=True) 
    4382 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4383 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4384 is deprecated and will be removed from pandas in a future version. Use
    4385 pandas.concat instead. 
    4386 self.df = self.df.append(df_add, ignore_index=True) 
    4387 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4388 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4389 is deprecated and will be removed from pandas in a future version. Use
    4390 pandas.concat instead. 
    4391 self.df = self.df.append(df_add, ignore_index=True) 
    4392 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4393 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4394 is deprecated and will be removed from pandas in a future version. Use
    4395 pandas.concat instead. 
    4396 self.df = self.df.append(df_add, ignore_index=True) 
    4397 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4398 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4399 is deprecated and will be removed from pandas in a future version. Use
    4400 pandas.concat instead. 
    4401 self.df = self.df.append(df_add, ignore_index=True) 
    4402 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4403 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4404 is deprecated and will be removed from pandas in a future version. Use
    4405 pandas.concat instead. 
    4406 self.df = self.df.append(df_add, ignore_index=True) 
    4407 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4408 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4409 is deprecated and will be removed from pandas in a future version. Use
    4410 pandas.concat instead. 
    4411 self.df = self.df.append(df_add, ignore_index=True) 
    4412 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4413 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4414 is deprecated and will be removed from pandas in a future version. Use
    4415 pandas.concat instead. 
    4416 self.df = self.df.append(df_add, ignore_index=True) 
    4417 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4418 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4419 is deprecated and will be removed from pandas in a future version. Use
    4420 pandas.concat instead. 
    4421 self.df = self.df.append(df_add, ignore_index=True) 
    4422 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4423 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4424 is deprecated and will be removed from pandas in a future version. Use
    4425 pandas.concat instead. 
    4426 self.df = self.df.append(df_add, ignore_index=True) 
    4427 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4428 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4429 is deprecated and will be removed from pandas in a future version. Use
    4430 pandas.concat instead. 
    4431 self.df = self.df.append(df_add, ignore_index=True) 
    4432 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4433 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4434 is deprecated and will be removed from pandas in a future version. Use
    4435 pandas.concat instead. 
    4436 self.df = self.df.append(df_add, ignore_index=True) 
    4437 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4438 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4439 is deprecated and will be removed from pandas in a future version. Use
    4440 pandas.concat instead. 
    4441 self.df = self.df.append(df_add, ignore_index=True) 
    4442 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4443 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4444 is deprecated and will be removed from pandas in a future version. Use
    4445 pandas.concat instead. 
    4446 self.df = self.df.append(df_add, ignore_index=True) 
    4447 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4448 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4449 is deprecated and will be removed from pandas in a future version. Use
    4450 pandas.concat instead. 
    4451 self.df = self.df.append(df_add, ignore_index=True) 
    4452 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4453 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4454 is deprecated and will be removed from pandas in a future version. Use
    4455 pandas.concat instead. 
    4456 self.df = self.df.append(df_add, ignore_index=True) 
    4457 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4458 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4459 is deprecated and will be removed from pandas in a future version. Use
    4460 pandas.concat instead. 
    4461 self.df = self.df.append(df_add, ignore_index=True) 
    4462 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4463 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4464 is deprecated and will be removed from pandas in a future version. Use
    4465 pandas.concat instead. 
    4466 self.df = self.df.append(df_add, ignore_index=True) 
    4467 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4468 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4469 is deprecated and will be removed from pandas in a future version. Use
    4470 pandas.concat instead. 
    4471 self.df = self.df.append(df_add, ignore_index=True) 
    4472 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4473 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4474 is deprecated and will be removed from pandas in a future version. Use
    4475 pandas.concat instead. 
    4476 self.df = self.df.append(df_add, ignore_index=True) 
    4477 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4478 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4479 is deprecated and will be removed from pandas in a future version. Use
    4480 pandas.concat instead. 
    4481 self.df = self.df.append(df_add, ignore_index=True) 
    4482 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4483 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4484 is deprecated and will be removed from pandas in a future version. Use
    4485 pandas.concat instead. 
    4486 self.df = self.df.append(df_add, ignore_index=True) 
    4487 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4488 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4489 is deprecated and will be removed from pandas in a future version. Use
    4490 pandas.concat instead. 
    4491 self.df = self.df.append(df_add, ignore_index=True) 
    4492 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4493 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4494 is deprecated and will be removed from pandas in a future version. Use
    4495 pandas.concat instead. 
    4496 self.df = self.df.append(df_add, ignore_index=True) 
    4497 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4498 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4499 is deprecated and will be removed from pandas in a future version. Use
    4500 pandas.concat instead. 
    4501 self.df = self.df.append(df_add, ignore_index=True) 
    4502 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4503 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4504 is deprecated and will be removed from pandas in a future version. Use
    4505 pandas.concat instead. 
    4506 self.df = self.df.append(df_add, ignore_index=True) 
    4507 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4508 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4509 is deprecated and will be removed from pandas in a future version. Use
    4510 pandas.concat instead. 
    4511 self.df = self.df.append(df_add, ignore_index=True) 
    4512 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4513 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4514 is deprecated and will be removed from pandas in a future version. Use
    4515 pandas.concat instead. 
    4516 self.df = self.df.append(df_add, ignore_index=True) 
    4517 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4518 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4519 is deprecated and will be removed from pandas in a future version. Use
    4520 pandas.concat instead. 
    4521 self.df = self.df.append(df_add, ignore_index=True) 
    4522 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4523 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4524 is deprecated and will be removed from pandas in a future version. Use
    4525 pandas.concat instead. 
    4526 self.df = self.df.append(df_add, ignore_index=True) 
    4527 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4528 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4529 is deprecated and will be removed from pandas in a future version. Use
    4530 pandas.concat instead. 
    4531 self.df = self.df.append(df_add, ignore_index=True) 
    4532 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4533 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4534 is deprecated and will be removed from pandas in a future version. Use
    4535 pandas.concat instead. 
    4536 self.df = self.df.append(df_add, ignore_index=True) 
    4537 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4538 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4539 is deprecated and will be removed from pandas in a future version. Use
    4540 pandas.concat instead. 
    4541 self.df = self.df.append(df_add, ignore_index=True) 
    4542 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4543 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4544 is deprecated and will be removed from pandas in a future version. Use
    4545 pandas.concat instead. 
    4546 self.df = self.df.append(df_add, ignore_index=True) 
    4547 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4548 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4549 is deprecated and will be removed from pandas in a future version. Use
    4550 pandas.concat instead. 
    4551 self.df = self.df.append(df_add, ignore_index=True) 
    4552 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4553 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4554 is deprecated and will be removed from pandas in a future version. Use
    4555 pandas.concat instead. 
    4556 self.df = self.df.append(df_add, ignore_index=True) 
    4557 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4558 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4559 is deprecated and will be removed from pandas in a future version. Use
    4560 pandas.concat instead. 
    4561 self.df = self.df.append(df_add, ignore_index=True) 
    4562 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4563 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4564 is deprecated and will be removed from pandas in a future version. Use
    4565 pandas.concat instead. 
    4566 self.df = self.df.append(df_add, ignore_index=True) 
    4567 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4568 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4569 is deprecated and will be removed from pandas in a future version. Use
    4570 pandas.concat instead. 
    4571 self.df = self.df.append(df_add, ignore_index=True) 
    4572 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4573 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4574 is deprecated and will be removed from pandas in a future version. Use
    4575 pandas.concat instead. 
    4576 self.df = self.df.append(df_add, ignore_index=True) 
    4577 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4578 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4579 is deprecated and will be removed from pandas in a future version. Use
    4580 pandas.concat instead. 
    4581 self.df = self.df.append(df_add, ignore_index=True) 
    4582 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4583 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4584 is deprecated and will be removed from pandas in a future version. Use
    4585 pandas.concat instead. 
    4586 self.df = self.df.append(df_add, ignore_index=True) 
    4587 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4588 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4589 is deprecated and will be removed from pandas in a future version. Use
    4590 pandas.concat instead. 
    4591 self.df = self.df.append(df_add, ignore_index=True) 
    4592 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4593 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4594 is deprecated and will be removed from pandas in a future version. Use
    4595 pandas.concat instead. 
    4596 self.df = self.df.append(df_add, ignore_index=True) 
    4597 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4598 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4599 is deprecated and will be removed from pandas in a future version. Use
    4600 pandas.concat instead. 
    4601 self.df = self.df.append(df_add, ignore_index=True) 
    4602 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4603 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4604 is deprecated and will be removed from pandas in a future version. Use
    4605 pandas.concat instead. 
    4606 self.df = self.df.append(df_add, ignore_index=True) 
    4607 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4608 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4609 is deprecated and will be removed from pandas in a future version. Use
    4610 pandas.concat instead. 
    4611 self.df = self.df.append(df_add, ignore_index=True) 
    4612 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4613 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4614 is deprecated and will be removed from pandas in a future version. Use
    4615 pandas.concat instead. 
    4616 self.df = self.df.append(df_add, ignore_index=True) 
    4617 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4618 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4619 is deprecated and will be removed from pandas in a future version. Use
    4620 pandas.concat instead. 
    4621 self.df = self.df.append(df_add, ignore_index=True) 
    4622 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4623 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4624 is deprecated and will be removed from pandas in a future version. Use
    4625 pandas.concat instead. 
    4626 self.df = self.df.append(df_add, ignore_index=True) 
    4627 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4628 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4629 is deprecated and will be removed from pandas in a future version. Use
    4630 pandas.concat instead. 
    4631 self.df = self.df.append(df_add, ignore_index=True) 
    4632 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4633 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4634 is deprecated and will be removed from pandas in a future version. Use
    4635 pandas.concat instead. 
    4636 self.df = self.df.append(df_add, ignore_index=True) 
    4637 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4638 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4639 is deprecated and will be removed from pandas in a future version. Use
    4640 pandas.concat instead. 
    4641 self.df = self.df.append(df_add, ignore_index=True) 
    4642 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4643 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4644 is deprecated and will be removed from pandas in a future version. Use
    4645 pandas.concat instead. 
    4646 self.df = self.df.append(df_add, ignore_index=True) 
    4647 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4648 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4649 is deprecated and will be removed from pandas in a future version. Use
    4650 pandas.concat instead. 
    4651 self.df = self.df.append(df_add, ignore_index=True) 
    4652 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4653 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4654 is deprecated and will be removed from pandas in a future version. Use
    4655 pandas.concat instead. 
    4656 self.df = self.df.append(df_add, ignore_index=True) 
    4657 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4658 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4659 is deprecated and will be removed from pandas in a future version. Use
    4660 pandas.concat instead. 
    4661 self.df = self.df.append(df_add, ignore_index=True) 
    4662 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4663 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4664 is deprecated and will be removed from pandas in a future version. Use
    4665 pandas.concat instead. 
    4666 self.df = self.df.append(df_add, ignore_index=True) 
    4667 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4668 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4669 is deprecated and will be removed from pandas in a future version. Use
    4670 pandas.concat instead. 
    4671 self.df = self.df.append(df_add, ignore_index=True) 
    4672 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4673 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4674 is deprecated and will be removed from pandas in a future version. Use
    4675 pandas.concat instead. 
    4676 self.df = self.df.append(df_add, ignore_index=True) 
    4677 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4678 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4679 is deprecated and will be removed from pandas in a future version. Use
    4680 pandas.concat instead. 
    4681 self.df = self.df.append(df_add, ignore_index=True) 
    4682 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4683 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4684 is deprecated and will be removed from pandas in a future version. Use
    4685 pandas.concat instead. 
    4686 self.df = self.df.append(df_add, ignore_index=True) 
    4687 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4688 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4689 is deprecated and will be removed from pandas in a future version. Use
    4690 pandas.concat instead. 
    4691 self.df = self.df.append(df_add, ignore_index=True) 
    4692 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4693 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4694 is deprecated and will be removed from pandas in a future version. Use
    4695 pandas.concat instead. 
    4696 self.df = self.df.append(df_add, ignore_index=True) 
    4697 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4698 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4699 is deprecated and will be removed from pandas in a future version. Use
    4700 pandas.concat instead. 
    4701 self.df = self.df.append(df_add, ignore_index=True) 
    4702 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4703 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4704 is deprecated and will be removed from pandas in a future version. Use
    4705 pandas.concat instead. 
    4706 self.df = self.df.append(df_add, ignore_index=True) 
    4707 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4708 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4709 is deprecated and will be removed from pandas in a future version. Use
    4710 pandas.concat instead. 
    4711 self.df = self.df.append(df_add, ignore_index=True) 
    4712 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4713 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4714 is deprecated and will be removed from pandas in a future version. Use
    4715 pandas.concat instead. 
    4716 self.df = self.df.append(df_add, ignore_index=True) 
    4717 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4718 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4719 is deprecated and will be removed from pandas in a future version. Use
    4720 pandas.concat instead. 
    4721 self.df = self.df.append(df_add, ignore_index=True) 
    4722 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4723 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4724 is deprecated and will be removed from pandas in a future version. Use
    4725 pandas.concat instead. 
    4726 self.df = self.df.append(df_add, ignore_index=True) 
    4727 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4728 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4729 is deprecated and will be removed from pandas in a future version. Use
    4730 pandas.concat instead. 
    4731 self.df = self.df.append(df_add, ignore_index=True) 
    4732 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4733 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4734 is deprecated and will be removed from pandas in a future version. Use
    4735 pandas.concat instead. 
    4736 self.df = self.df.append(df_add, ignore_index=True) 
    4737 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4738 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4739 is deprecated and will be removed from pandas in a future version. Use
    4740 pandas.concat instead. 
    4741 self.df = self.df.append(df_add, ignore_index=True) 
    4742 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4743 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4744 is deprecated and will be removed from pandas in a future version. Use
    4745 pandas.concat instead. 
    4746 self.df = self.df.append(df_add, ignore_index=True) 
    4747 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4748 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4749 is deprecated and will be removed from pandas in a future version. Use
    4750 pandas.concat instead. 
    4751 self.df = self.df.append(df_add, ignore_index=True) 
    4752 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4753 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4754 is deprecated and will be removed from pandas in a future version. Use
    4755 pandas.concat instead. 
    4756 self.df = self.df.append(df_add, ignore_index=True) 
    4757 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4758 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4759 is deprecated and will be removed from pandas in a future version. Use
    4760 pandas.concat instead. 
    4761 self.df = self.df.append(df_add, ignore_index=True) 
    4762 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4763 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4764 is deprecated and will be removed from pandas in a future version. Use
    4765 pandas.concat instead. 
    4766 self.df = self.df.append(df_add, ignore_index=True) 
    4767 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4768 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4769 is deprecated and will be removed from pandas in a future version. Use
    4770 pandas.concat instead. 
    4771 self.df = self.df.append(df_add, ignore_index=True) 
    4772 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4773 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4774 is deprecated and will be removed from pandas in a future version. Use
    4775 pandas.concat instead. 
    4776 self.df = self.df.append(df_add, ignore_index=True) 
    4777 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4778 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4779 is deprecated and will be removed from pandas in a future version. Use
    4780 pandas.concat instead. 
    4781 self.df = self.df.append(df_add, ignore_index=True) 
    4782 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4783 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4784 is deprecated and will be removed from pandas in a future version. Use
    4785 pandas.concat instead. 
    4786 self.df = self.df.append(df_add, ignore_index=True) 
    4787 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4788 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4789 is deprecated and will be removed from pandas in a future version. Use
    4790 pandas.concat instead. 
    4791 self.df = self.df.append(df_add, ignore_index=True) 
    4792 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4793 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4794 is deprecated and will be removed from pandas in a future version. Use
    4795 pandas.concat instead. 
    4796 self.df = self.df.append(df_add, ignore_index=True) 
    4797 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4798 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4799 is deprecated and will be removed from pandas in a future version. Use
    4800 pandas.concat instead. 
    4801 self.df = self.df.append(df_add, ignore_index=True) 
    4802 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4803 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4804 is deprecated and will be removed from pandas in a future version. Use
    4805 pandas.concat instead. 
    4806 self.df = self.df.append(df_add, ignore_index=True) 
    4807 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4808 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4809 is deprecated and will be removed from pandas in a future version. Use
    4810 pandas.concat instead. 
    4811 self.df = self.df.append(df_add, ignore_index=True) 
    4812 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4813 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4814 is deprecated and will be removed from pandas in a future version. Use
    4815 pandas.concat instead. 
    4816 self.df = self.df.append(df_add, ignore_index=True) 
    4817 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4818 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4819 is deprecated and will be removed from pandas in a future version. Use
    4820 pandas.concat instead. 
    4821 self.df = self.df.append(df_add, ignore_index=True) 
    4822 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4823 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4824 is deprecated and will be removed from pandas in a future version. Use
    4825 pandas.concat instead. 
    4826 self.df = self.df.append(df_add, ignore_index=True) 
    4827 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4828 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4829 is deprecated and will be removed from pandas in a future version. Use
    4830 pandas.concat instead. 
    4831 self.df = self.df.append(df_add, ignore_index=True) 
    4832 Unique peptide pairs with pseudobonds: 39 
    4833 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4834 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4835 is deprecated and will be removed from pandas in a future version. Use
    4836 pandas.concat instead. 
    4837 self.df = self.df.append(df_add, ignore_index=True) 
    4838 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4839 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4840 is deprecated and will be removed from pandas in a future version. Use
    4841 pandas.concat instead. 
    4842 self.df = self.df.append(df_add, ignore_index=True) 
    4843 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4844 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4845 is deprecated and will be removed from pandas in a future version. Use
    4846 pandas.concat instead. 
    4847 self.df = self.df.append(df_add, ignore_index=True) 
    4848 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4849 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4850 is deprecated and will be removed from pandas in a future version. Use
    4851 pandas.concat instead. 
    4852 self.df = self.df.append(df_add, ignore_index=True) 
    4853 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4854 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4855 is deprecated and will be removed from pandas in a future version. Use
    4856 pandas.concat instead. 
    4857 self.df = self.df.append(df_add, ignore_index=True) 
    4858 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4859 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4860 is deprecated and will be removed from pandas in a future version. Use
    4861 pandas.concat instead. 
    4862 self.df = self.df.append(df_add, ignore_index=True) 
    4863 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4864 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4865 is deprecated and will be removed from pandas in a future version. Use
    4866 pandas.concat instead. 
    4867 self.df = self.df.append(df_add, ignore_index=True) 
    4868 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4869 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4870 is deprecated and will be removed from pandas in a future version. Use
    4871 pandas.concat instead. 
    4872 self.df = self.df.append(df_add, ignore_index=True) 
    4873 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4874 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4875 is deprecated and will be removed from pandas in a future version. Use
    4876 pandas.concat instead. 
    4877 self.df = self.df.append(df_add, ignore_index=True) 
    4878 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4879 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4880 is deprecated and will be removed from pandas in a future version. Use
    4881 pandas.concat instead. 
    4882 self.df = self.df.append(df_add, ignore_index=True) 
    4883 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4884 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4885 is deprecated and will be removed from pandas in a future version. Use
    4886 pandas.concat instead. 
    4887 self.df = self.df.append(df_add, ignore_index=True) 
    4888 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4889 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4890 is deprecated and will be removed from pandas in a future version. Use
    4891 pandas.concat instead. 
    4892 self.df = self.df.append(df_add, ignore_index=True) 
    4893 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4894 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4895 is deprecated and will be removed from pandas in a future version. Use
    4896 pandas.concat instead. 
    4897 self.df = self.df.append(df_add, ignore_index=True) 
    4898 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4899 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4900 is deprecated and will be removed from pandas in a future version. Use
    4901 pandas.concat instead. 
    4902 self.df = self.df.append(df_add, ignore_index=True) 
    4903 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4904 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4905 is deprecated and will be removed from pandas in a future version. Use
    4906 pandas.concat instead. 
    4907 self.df = self.df.append(df_add, ignore_index=True) 
    4908 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4909 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4910 is deprecated and will be removed from pandas in a future version. Use
    4911 pandas.concat instead. 
    4912 self.df = self.df.append(df_add, ignore_index=True) 
    4913 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4914 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4915 is deprecated and will be removed from pandas in a future version. Use
    4916 pandas.concat instead. 
    4917 self.df = self.df.append(df_add, ignore_index=True) 
    4918 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4919 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4920 is deprecated and will be removed from pandas in a future version. Use
    4921 pandas.concat instead. 
    4922 self.df = self.df.append(df_add, ignore_index=True) 
    4923 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4924 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4925 is deprecated and will be removed from pandas in a future version. Use
    4926 pandas.concat instead. 
    4927 self.df = self.df.append(df_add, ignore_index=True) 
    4928 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4929 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4930 is deprecated and will be removed from pandas in a future version. Use
    4931 pandas.concat instead. 
    4932 self.df = self.df.append(df_add, ignore_index=True) 
    4933 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4934 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4935 is deprecated and will be removed from pandas in a future version. Use
    4936 pandas.concat instead. 
    4937 self.df = self.df.append(df_add, ignore_index=True) 
    4938 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4939 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4940 is deprecated and will be removed from pandas in a future version. Use
    4941 pandas.concat instead. 
    4942 self.df = self.df.append(df_add, ignore_index=True) 
    4943 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4944 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4945 is deprecated and will be removed from pandas in a future version. Use
    4946 pandas.concat instead. 
    4947 self.df = self.df.append(df_add, ignore_index=True) 
    4948 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4949 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4950 is deprecated and will be removed from pandas in a future version. Use
    4951 pandas.concat instead. 
    4952 self.df = self.df.append(df_add, ignore_index=True) 
    4953 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4954 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4955 is deprecated and will be removed from pandas in a future version. Use
    4956 pandas.concat instead. 
    4957 self.df = self.df.append(df_add, ignore_index=True) 
    4958 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4959 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4960 is deprecated and will be removed from pandas in a future version. Use
    4961 pandas.concat instead. 
    4962 self.df = self.df.append(df_add, ignore_index=True) 
    4963 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4964 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4965 is deprecated and will be removed from pandas in a future version. Use
    4966 pandas.concat instead. 
    4967 self.df = self.df.append(df_add, ignore_index=True) 
    4968 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4969 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4970 is deprecated and will be removed from pandas in a future version. Use
    4971 pandas.concat instead. 
    4972 self.df = self.df.append(df_add, ignore_index=True) 
    4973 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4974 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4975 is deprecated and will be removed from pandas in a future version. Use
    4976 pandas.concat instead. 
    4977 self.df = self.df.append(df_add, ignore_index=True) 
    4978 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4979 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4980 is deprecated and will be removed from pandas in a future version. Use
    4981 pandas.concat instead. 
    4982 self.df = self.df.append(df_add, ignore_index=True) 
    4983 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4984 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4985 is deprecated and will be removed from pandas in a future version. Use
    4986 pandas.concat instead. 
    4987 self.df = self.df.append(df_add, ignore_index=True) 
    4988 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4989 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4990 is deprecated and will be removed from pandas in a future version. Use
    4991 pandas.concat instead. 
    4992 self.df = self.df.append(df_add, ignore_index=True) 
    4993 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4994 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    4995 is deprecated and will be removed from pandas in a future version. Use
    4996 pandas.concat instead. 
    4997 self.df = self.df.append(df_add, ignore_index=True) 
    4998 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    4999 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5000 is deprecated and will be removed from pandas in a future version. Use
    5001 pandas.concat instead. 
    5002 self.df = self.df.append(df_add, ignore_index=True) 
    5003 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5004 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5005 is deprecated and will be removed from pandas in a future version. Use
    5006 pandas.concat instead. 
    5007 self.df = self.df.append(df_add, ignore_index=True) 
    5008 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5009 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5010 is deprecated and will be removed from pandas in a future version. Use
    5011 pandas.concat instead. 
    5012 self.df = self.df.append(df_add, ignore_index=True) 
    5013 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5014 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5015 is deprecated and will be removed from pandas in a future version. Use
    5016 pandas.concat instead. 
    5017 self.df = self.df.append(df_add, ignore_index=True) 
    5018 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5019 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5020 is deprecated and will be removed from pandas in a future version. Use
    5021 pandas.concat instead. 
    5022 self.df = self.df.append(df_add, ignore_index=True) 
    5023 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5024 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5025 is deprecated and will be removed from pandas in a future version. Use
    5026 pandas.concat instead. 
    5027 self.df = self.df.append(df_add, ignore_index=True) 
    5028 Pseudobonds are stored in
    5029 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.pb 
    5030 Mapping information is stored in
    5031 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.tsv 
    5032 Traceback (most recent call last): 
    5033 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5034 packages\chimerax\xmas\tool.py", line 252, in <lambda> 
    5035 self.uncheck(button, checked, 
    5036 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5037 packages\chimerax\xmas\tool.py", line 308, in uncheck 
    5038 self.color_gradient(checked, pbs, button.policy, reset_values) 
    5039 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5040 packages\chimerax\xmas\tool.py", line 453, in color_gradient 
    5041 color_key.delete() 
    5042 File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
    5043 packages\chimerax\color_key\model.py", line 91, in delete 
    5044 self.session.main_view.remove_overlays([self], delete = False) 
    5045 AttributeError: 'NoneType' object has no attribute 'main_view' 
    5046  
    5047 AttributeError: 'NoneType' object has no attribute 'main_view' 
    5048  
    5049 File "C:\Program Files\ChimeraX 1.2.5\bin\lib\site-
    5050 packages\chimerax\color_key\model.py", line 91, in delete 
    5051 self.session.main_view.remove_overlays([self], delete = False) 
    5052  
    5053 See log for complete Python traceback. 
    5054  
    5055 
    5056 > select #2
    5057 
    5058 3241 atoms, 2969 bonds, 16 pseudobonds, 708 residues, 3 models selected 
    5059 
    5060 > view matrix models
    5061 > #2,-0.90434,0.39255,-0.16754,56.359,0.0083293,0.4087,0.91263,-35.808,0.42673,0.82393,-0.37287,-53.517
    5062 
    5063 > view matrix models
    5064 > #2,-0.90434,0.39255,-0.16754,62.416,0.0083293,0.4087,0.91263,-39.041,0.42673,0.82393,-0.37287,-55.959
    5065 
    5066 > view matrix models
    5067 > #2,-0.90434,0.39255,-0.16754,66.977,0.0083293,0.4087,0.91263,-40.737,0.42673,0.82393,-0.37287,-50.694
    5068 
    5069 > view matrix models
    5070 > #2,-0.90434,0.39255,-0.16754,55.635,0.0083293,0.4087,0.91263,-48.853,0.42673,0.82393,-0.37287,-47.857
    5071 
    5072 > view matrix models
    5073 > #2,-0.90434,0.39255,-0.16754,60.584,0.0083293,0.4087,0.91263,-46.623,0.42673,0.82393,-0.37287,-45.84
    5074 
    5075 > ui mousemode right "rotate selected models"
    5076 
    5077 > view matrix models
    5078 > #2,0.8723,-0.20591,0.4435,47.514,-0.043596,0.87065,0.48998,-60.06,-0.48703,-0.44674,0.75049,9.9592
    5079 
    5080 > view matrix models
    5081 > #2,0.39771,0.6753,-0.62113,28.729,0.28784,-0.73463,-0.61439,-14.46,-0.87119,0.065567,-0.48654,1.3496
    5082 
    5083 > view matrix models
    5084 > #2,0.60155,0.60149,-0.52568,27.377,0.29289,-0.7783,-0.55539,-13.204,-0.7432,0.18013,-0.64436,-4.4584
    5085 
    5086 > view matrix models
    5087 > #2,0.63919,0.5378,-0.54974,28.738,0.42659,-0.84271,-0.32841,-13.687,-0.63989,-0.024601,-0.76807,0.25975
    5088 
    5089 > view matrix models
    5090 > #2,0.66832,0.64919,-0.36317,24.577,0.61578,-0.75672,-0.21949,-19.845,-0.41731,-0.076941,-0.9055,-1.9615
    5091 
    5092 > ui mousemode right "translate selected models"
    5093 
    5094 > view matrix models
    5095 > #2,0.66832,0.64919,-0.36317,26.941,0.61578,-0.75672,-0.21949,-19.241,-0.41731,-0.076941,-0.9055,-2.1401
    5096 
    5097 > view matrix models
    5098 > #2,0.66832,0.64919,-0.36317,31.037,0.61578,-0.75672,-0.21949,-16.723,-0.41731,-0.076941,-0.9055,-4.3512
    5099 
    5100 > view matrix models
    5101 > #2,0.66832,0.64919,-0.36317,27.312,0.61578,-0.75672,-0.21949,-21.435,-0.41731,-0.076941,-0.9055,-3.9515
    5102 
    5103 > view matrix models
    5104 > #2,0.66832,0.64919,-0.36317,25.598,0.61578,-0.75672,-0.21949,-24.072,-0.41731,-0.076941,-0.9055,-2.975
    5105 
    5106 > close #4
    5107 
    5108 > close #3
    5109 
    5110  
    5111 Peptide pair mapping of PD evidence file:
    5112 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx 
    5113 Unique peptide pairs: 155 out of 155 
    5114 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5115 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5116 is deprecated and will be removed from pandas in a future version. Use
    5117 pandas.concat instead. 
    5118 self.df = self.df.append(df_add, ignore_index=True) 
    5119 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5120 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5121 is deprecated and will be removed from pandas in a future version. Use
    5122 pandas.concat instead. 
    5123 self.df = self.df.append(df_add, ignore_index=True) 
    5124 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5125 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5126 is deprecated and will be removed from pandas in a future version. Use
    5127 pandas.concat instead. 
    5128 self.df = self.df.append(df_add, ignore_index=True) 
    5129 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5130 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5131 is deprecated and will be removed from pandas in a future version. Use
    5132 pandas.concat instead. 
    5133 self.df = self.df.append(df_add, ignore_index=True) 
    5134 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5135 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5136 is deprecated and will be removed from pandas in a future version. Use
    5137 pandas.concat instead. 
    5138 self.df = self.df.append(df_add, ignore_index=True) 
    5139 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5140 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5141 is deprecated and will be removed from pandas in a future version. Use
    5142 pandas.concat instead. 
    5143 self.df = self.df.append(df_add, ignore_index=True) 
    5144 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5145 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5146 is deprecated and will be removed from pandas in a future version. Use
    5147 pandas.concat instead. 
    5148 self.df = self.df.append(df_add, ignore_index=True) 
    5149 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5150 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5151 is deprecated and will be removed from pandas in a future version. Use
    5152 pandas.concat instead. 
    5153 self.df = self.df.append(df_add, ignore_index=True) 
    5154 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5155 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5156 is deprecated and will be removed from pandas in a future version. Use
    5157 pandas.concat instead. 
    5158 self.df = self.df.append(df_add, ignore_index=True) 
    5159 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5160 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5161 is deprecated and will be removed from pandas in a future version. Use
    5162 pandas.concat instead. 
    5163 self.df = self.df.append(df_add, ignore_index=True) 
    5164 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5165 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5166 is deprecated and will be removed from pandas in a future version. Use
    5167 pandas.concat instead. 
    5168 self.df = self.df.append(df_add, ignore_index=True) 
    5169 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5170 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5171 is deprecated and will be removed from pandas in a future version. Use
    5172 pandas.concat instead. 
    5173 self.df = self.df.append(df_add, ignore_index=True) 
    5174 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5175 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5176 is deprecated and will be removed from pandas in a future version. Use
    5177 pandas.concat instead. 
    5178 self.df = self.df.append(df_add, ignore_index=True) 
    5179 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5180 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5181 is deprecated and will be removed from pandas in a future version. Use
    5182 pandas.concat instead. 
    5183 self.df = self.df.append(df_add, ignore_index=True) 
    5184 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5185 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5186 is deprecated and will be removed from pandas in a future version. Use
    5187 pandas.concat instead. 
    5188 self.df = self.df.append(df_add, ignore_index=True) 
    5189 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5190 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5191 is deprecated and will be removed from pandas in a future version. Use
    5192 pandas.concat instead. 
    5193 self.df = self.df.append(df_add, ignore_index=True) 
    5194 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5195 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5196 is deprecated and will be removed from pandas in a future version. Use
    5197 pandas.concat instead. 
    5198 self.df = self.df.append(df_add, ignore_index=True) 
    5199 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5200 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5201 is deprecated and will be removed from pandas in a future version. Use
    5202 pandas.concat instead. 
    5203 self.df = self.df.append(df_add, ignore_index=True) 
    5204 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5205 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5206 is deprecated and will be removed from pandas in a future version. Use
    5207 pandas.concat instead. 
    5208 self.df = self.df.append(df_add, ignore_index=True) 
    5209 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5210 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5211 is deprecated and will be removed from pandas in a future version. Use
    5212 pandas.concat instead. 
    5213 self.df = self.df.append(df_add, ignore_index=True) 
    5214 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5215 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5216 is deprecated and will be removed from pandas in a future version. Use
    5217 pandas.concat instead. 
    5218 self.df = self.df.append(df_add, ignore_index=True) 
    5219 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5220 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5221 is deprecated and will be removed from pandas in a future version. Use
    5222 pandas.concat instead. 
    5223 self.df = self.df.append(df_add, ignore_index=True) 
    5224 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5225 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5226 is deprecated and will be removed from pandas in a future version. Use
    5227 pandas.concat instead. 
    5228 self.df = self.df.append(df_add, ignore_index=True) 
    5229 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5230 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5231 is deprecated and will be removed from pandas in a future version. Use
    5232 pandas.concat instead. 
    5233 self.df = self.df.append(df_add, ignore_index=True) 
    5234 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5235 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5236 is deprecated and will be removed from pandas in a future version. Use
    5237 pandas.concat instead. 
    5238 self.df = self.df.append(df_add, ignore_index=True) 
    5239 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5240 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5241 is deprecated and will be removed from pandas in a future version. Use
    5242 pandas.concat instead. 
    5243 self.df = self.df.append(df_add, ignore_index=True) 
    5244 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5245 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5246 is deprecated and will be removed from pandas in a future version. Use
    5247 pandas.concat instead. 
    5248 self.df = self.df.append(df_add, ignore_index=True) 
    5249 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5250 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5251 is deprecated and will be removed from pandas in a future version. Use
    5252 pandas.concat instead. 
    5253 self.df = self.df.append(df_add, ignore_index=True) 
    5254 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5255 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5256 is deprecated and will be removed from pandas in a future version. Use
    5257 pandas.concat instead. 
    5258 self.df = self.df.append(df_add, ignore_index=True) 
    5259 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5260 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5261 is deprecated and will be removed from pandas in a future version. Use
    5262 pandas.concat instead. 
    5263 self.df = self.df.append(df_add, ignore_index=True) 
    5264 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5265 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5266 is deprecated and will be removed from pandas in a future version. Use
    5267 pandas.concat instead. 
    5268 self.df = self.df.append(df_add, ignore_index=True) 
    5269 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5270 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5271 is deprecated and will be removed from pandas in a future version. Use
    5272 pandas.concat instead. 
    5273 self.df = self.df.append(df_add, ignore_index=True) 
    5274 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5275 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5276 is deprecated and will be removed from pandas in a future version. Use
    5277 pandas.concat instead. 
    5278 self.df = self.df.append(df_add, ignore_index=True) 
    5279 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5280 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5281 is deprecated and will be removed from pandas in a future version. Use
    5282 pandas.concat instead. 
    5283 self.df = self.df.append(df_add, ignore_index=True) 
    5284 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5285 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5286 is deprecated and will be removed from pandas in a future version. Use
    5287 pandas.concat instead. 
    5288 self.df = self.df.append(df_add, ignore_index=True) 
    5289 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5290 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5291 is deprecated and will be removed from pandas in a future version. Use
    5292 pandas.concat instead. 
    5293 self.df = self.df.append(df_add, ignore_index=True) 
    5294 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5295 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5296 is deprecated and will be removed from pandas in a future version. Use
    5297 pandas.concat instead. 
    5298 self.df = self.df.append(df_add, ignore_index=True) 
    5299 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5300 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5301 is deprecated and will be removed from pandas in a future version. Use
    5302 pandas.concat instead. 
    5303 self.df = self.df.append(df_add, ignore_index=True) 
    5304 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5305 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5306 is deprecated and will be removed from pandas in a future version. Use
    5307 pandas.concat instead. 
    5308 self.df = self.df.append(df_add, ignore_index=True) 
    5309 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5310 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5311 is deprecated and will be removed from pandas in a future version. Use
    5312 pandas.concat instead. 
    5313 self.df = self.df.append(df_add, ignore_index=True) 
    5314 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5315 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5316 is deprecated and will be removed from pandas in a future version. Use
    5317 pandas.concat instead. 
    5318 self.df = self.df.append(df_add, ignore_index=True) 
    5319 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5320 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5321 is deprecated and will be removed from pandas in a future version. Use
    5322 pandas.concat instead. 
    5323 self.df = self.df.append(df_add, ignore_index=True) 
    5324 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5325 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5326 is deprecated and will be removed from pandas in a future version. Use
    5327 pandas.concat instead. 
    5328 self.df = self.df.append(df_add, ignore_index=True) 
    5329 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5330 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5331 is deprecated and will be removed from pandas in a future version. Use
    5332 pandas.concat instead. 
    5333 self.df = self.df.append(df_add, ignore_index=True) 
    5334 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5335 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5336 is deprecated and will be removed from pandas in a future version. Use
    5337 pandas.concat instead. 
    5338 self.df = self.df.append(df_add, ignore_index=True) 
    5339 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5340 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5341 is deprecated and will be removed from pandas in a future version. Use
    5342 pandas.concat instead. 
    5343 self.df = self.df.append(df_add, ignore_index=True) 
    5344 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5345 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5346 is deprecated and will be removed from pandas in a future version. Use
    5347 pandas.concat instead. 
    5348 self.df = self.df.append(df_add, ignore_index=True) 
    5349 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5350 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5351 is deprecated and will be removed from pandas in a future version. Use
    5352 pandas.concat instead. 
    5353 self.df = self.df.append(df_add, ignore_index=True) 
    5354 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5355 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5356 is deprecated and will be removed from pandas in a future version. Use
    5357 pandas.concat instead. 
    5358 self.df = self.df.append(df_add, ignore_index=True) 
    5359 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5360 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5361 is deprecated and will be removed from pandas in a future version. Use
    5362 pandas.concat instead. 
    5363 self.df = self.df.append(df_add, ignore_index=True) 
    5364 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5365 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5366 is deprecated and will be removed from pandas in a future version. Use
    5367 pandas.concat instead. 
    5368 self.df = self.df.append(df_add, ignore_index=True) 
    5369 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5370 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5371 is deprecated and will be removed from pandas in a future version. Use
    5372 pandas.concat instead. 
    5373 self.df = self.df.append(df_add, ignore_index=True) 
    5374 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5375 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5376 is deprecated and will be removed from pandas in a future version. Use
    5377 pandas.concat instead. 
    5378 self.df = self.df.append(df_add, ignore_index=True) 
    5379 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5380 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5381 is deprecated and will be removed from pandas in a future version. Use
    5382 pandas.concat instead. 
    5383 self.df = self.df.append(df_add, ignore_index=True) 
    5384 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5385 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5386 is deprecated and will be removed from pandas in a future version. Use
    5387 pandas.concat instead. 
    5388 self.df = self.df.append(df_add, ignore_index=True) 
    5389 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5390 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5391 is deprecated and will be removed from pandas in a future version. Use
    5392 pandas.concat instead. 
    5393 self.df = self.df.append(df_add, ignore_index=True) 
    5394 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5395 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5396 is deprecated and will be removed from pandas in a future version. Use
    5397 pandas.concat instead. 
    5398 self.df = self.df.append(df_add, ignore_index=True) 
    5399 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5400 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5401 is deprecated and will be removed from pandas in a future version. Use
    5402 pandas.concat instead. 
    5403 self.df = self.df.append(df_add, ignore_index=True) 
    5404 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5405 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5406 is deprecated and will be removed from pandas in a future version. Use
    5407 pandas.concat instead. 
    5408 self.df = self.df.append(df_add, ignore_index=True) 
    5409 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5410 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5411 is deprecated and will be removed from pandas in a future version. Use
    5412 pandas.concat instead. 
    5413 self.df = self.df.append(df_add, ignore_index=True) 
    5414 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5415 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5416 is deprecated and will be removed from pandas in a future version. Use
    5417 pandas.concat instead. 
    5418 self.df = self.df.append(df_add, ignore_index=True) 
    5419 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5420 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5421 is deprecated and will be removed from pandas in a future version. Use
    5422 pandas.concat instead. 
    5423 self.df = self.df.append(df_add, ignore_index=True) 
    5424 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5425 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5426 is deprecated and will be removed from pandas in a future version. Use
    5427 pandas.concat instead. 
    5428 self.df = self.df.append(df_add, ignore_index=True) 
    5429 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5430 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5431 is deprecated and will be removed from pandas in a future version. Use
    5432 pandas.concat instead. 
    5433 self.df = self.df.append(df_add, ignore_index=True) 
    5434 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5435 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5436 is deprecated and will be removed from pandas in a future version. Use
    5437 pandas.concat instead. 
    5438 self.df = self.df.append(df_add, ignore_index=True) 
    5439 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5440 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5441 is deprecated and will be removed from pandas in a future version. Use
    5442 pandas.concat instead. 
    5443 self.df = self.df.append(df_add, ignore_index=True) 
    5444 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5445 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5446 is deprecated and will be removed from pandas in a future version. Use
    5447 pandas.concat instead. 
    5448 self.df = self.df.append(df_add, ignore_index=True) 
    5449 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5450 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5451 is deprecated and will be removed from pandas in a future version. Use
    5452 pandas.concat instead. 
    5453 self.df = self.df.append(df_add, ignore_index=True) 
    5454 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5455 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5456 is deprecated and will be removed from pandas in a future version. Use
    5457 pandas.concat instead. 
    5458 self.df = self.df.append(df_add, ignore_index=True) 
    5459 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5460 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5461 is deprecated and will be removed from pandas in a future version. Use
    5462 pandas.concat instead. 
    5463 self.df = self.df.append(df_add, ignore_index=True) 
    5464 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5465 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5466 is deprecated and will be removed from pandas in a future version. Use
    5467 pandas.concat instead. 
    5468 self.df = self.df.append(df_add, ignore_index=True) 
    5469 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5470 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5471 is deprecated and will be removed from pandas in a future version. Use
    5472 pandas.concat instead. 
    5473 self.df = self.df.append(df_add, ignore_index=True) 
    5474 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5475 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5476 is deprecated and will be removed from pandas in a future version. Use
    5477 pandas.concat instead. 
    5478 self.df = self.df.append(df_add, ignore_index=True) 
    5479 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5480 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5481 is deprecated and will be removed from pandas in a future version. Use
    5482 pandas.concat instead. 
    5483 self.df = self.df.append(df_add, ignore_index=True) 
    5484 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5485 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5486 is deprecated and will be removed from pandas in a future version. Use
    5487 pandas.concat instead. 
    5488 self.df = self.df.append(df_add, ignore_index=True) 
    5489 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5490 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5491 is deprecated and will be removed from pandas in a future version. Use
    5492 pandas.concat instead. 
    5493 self.df = self.df.append(df_add, ignore_index=True) 
    5494 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5495 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5496 is deprecated and will be removed from pandas in a future version. Use
    5497 pandas.concat instead. 
    5498 self.df = self.df.append(df_add, ignore_index=True) 
    5499 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5500 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5501 is deprecated and will be removed from pandas in a future version. Use
    5502 pandas.concat instead. 
    5503 self.df = self.df.append(df_add, ignore_index=True) 
    5504 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5505 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5506 is deprecated and will be removed from pandas in a future version. Use
    5507 pandas.concat instead. 
    5508 self.df = self.df.append(df_add, ignore_index=True) 
    5509 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5510 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5511 is deprecated and will be removed from pandas in a future version. Use
    5512 pandas.concat instead. 
    5513 self.df = self.df.append(df_add, ignore_index=True) 
    5514 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5515 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5516 is deprecated and will be removed from pandas in a future version. Use
    5517 pandas.concat instead. 
    5518 self.df = self.df.append(df_add, ignore_index=True) 
    5519 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5520 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5521 is deprecated and will be removed from pandas in a future version. Use
    5522 pandas.concat instead. 
    5523 self.df = self.df.append(df_add, ignore_index=True) 
    5524 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5525 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5526 is deprecated and will be removed from pandas in a future version. Use
    5527 pandas.concat instead. 
    5528 self.df = self.df.append(df_add, ignore_index=True) 
    5529 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5530 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5531 is deprecated and will be removed from pandas in a future version. Use
    5532 pandas.concat instead. 
    5533 self.df = self.df.append(df_add, ignore_index=True) 
    5534 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5535 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5536 is deprecated and will be removed from pandas in a future version. Use
    5537 pandas.concat instead. 
    5538 self.df = self.df.append(df_add, ignore_index=True) 
    5539 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5540 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5541 is deprecated and will be removed from pandas in a future version. Use
    5542 pandas.concat instead. 
    5543 self.df = self.df.append(df_add, ignore_index=True) 
    5544 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5545 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5546 is deprecated and will be removed from pandas in a future version. Use
    5547 pandas.concat instead. 
    5548 self.df = self.df.append(df_add, ignore_index=True) 
    5549 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5550 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5551 is deprecated and will be removed from pandas in a future version. Use
    5552 pandas.concat instead. 
    5553 self.df = self.df.append(df_add, ignore_index=True) 
    5554 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5555 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5556 is deprecated and will be removed from pandas in a future version. Use
    5557 pandas.concat instead. 
    5558 self.df = self.df.append(df_add, ignore_index=True) 
    5559 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5560 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5561 is deprecated and will be removed from pandas in a future version. Use
    5562 pandas.concat instead. 
    5563 self.df = self.df.append(df_add, ignore_index=True) 
    5564 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5565 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5566 is deprecated and will be removed from pandas in a future version. Use
    5567 pandas.concat instead. 
    5568 self.df = self.df.append(df_add, ignore_index=True) 
    5569 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5570 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5571 is deprecated and will be removed from pandas in a future version. Use
    5572 pandas.concat instead. 
    5573 self.df = self.df.append(df_add, ignore_index=True) 
    5574 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5575 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5576 is deprecated and will be removed from pandas in a future version. Use
    5577 pandas.concat instead. 
    5578 self.df = self.df.append(df_add, ignore_index=True) 
    5579 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5580 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5581 is deprecated and will be removed from pandas in a future version. Use
    5582 pandas.concat instead. 
    5583 self.df = self.df.append(df_add, ignore_index=True) 
    5584 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5585 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5586 is deprecated and will be removed from pandas in a future version. Use
    5587 pandas.concat instead. 
    5588 self.df = self.df.append(df_add, ignore_index=True) 
    5589 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5590 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5591 is deprecated and will be removed from pandas in a future version. Use
    5592 pandas.concat instead. 
    5593 self.df = self.df.append(df_add, ignore_index=True) 
    5594 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5595 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5596 is deprecated and will be removed from pandas in a future version. Use
    5597 pandas.concat instead. 
    5598 self.df = self.df.append(df_add, ignore_index=True) 
    5599 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5600 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5601 is deprecated and will be removed from pandas in a future version. Use
    5602 pandas.concat instead. 
    5603 self.df = self.df.append(df_add, ignore_index=True) 
    5604 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5605 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5606 is deprecated and will be removed from pandas in a future version. Use
    5607 pandas.concat instead. 
    5608 self.df = self.df.append(df_add, ignore_index=True) 
    5609 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5610 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5611 is deprecated and will be removed from pandas in a future version. Use
    5612 pandas.concat instead. 
    5613 self.df = self.df.append(df_add, ignore_index=True) 
    5614 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5615 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5616 is deprecated and will be removed from pandas in a future version. Use
    5617 pandas.concat instead. 
    5618 self.df = self.df.append(df_add, ignore_index=True) 
    5619 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5620 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5621 is deprecated and will be removed from pandas in a future version. Use
    5622 pandas.concat instead. 
    5623 self.df = self.df.append(df_add, ignore_index=True) 
    5624 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5625 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5626 is deprecated and will be removed from pandas in a future version. Use
    5627 pandas.concat instead. 
    5628 self.df = self.df.append(df_add, ignore_index=True) 
    5629 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5630 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5631 is deprecated and will be removed from pandas in a future version. Use
    5632 pandas.concat instead. 
    5633 self.df = self.df.append(df_add, ignore_index=True) 
    5634 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5635 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5636 is deprecated and will be removed from pandas in a future version. Use
    5637 pandas.concat instead. 
    5638 self.df = self.df.append(df_add, ignore_index=True) 
    5639 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5640 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5641 is deprecated and will be removed from pandas in a future version. Use
    5642 pandas.concat instead. 
    5643 self.df = self.df.append(df_add, ignore_index=True) 
    5644 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5645 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5646 is deprecated and will be removed from pandas in a future version. Use
    5647 pandas.concat instead. 
    5648 self.df = self.df.append(df_add, ignore_index=True) 
    5649 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5650 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5651 is deprecated and will be removed from pandas in a future version. Use
    5652 pandas.concat instead. 
    5653 self.df = self.df.append(df_add, ignore_index=True) 
    5654 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5655 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5656 is deprecated and will be removed from pandas in a future version. Use
    5657 pandas.concat instead. 
    5658 self.df = self.df.append(df_add, ignore_index=True) 
    5659 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5660 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5661 is deprecated and will be removed from pandas in a future version. Use
    5662 pandas.concat instead. 
    5663 self.df = self.df.append(df_add, ignore_index=True) 
    5664 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5665 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5666 is deprecated and will be removed from pandas in a future version. Use
    5667 pandas.concat instead. 
    5668 self.df = self.df.append(df_add, ignore_index=True) 
    5669 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5670 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5671 is deprecated and will be removed from pandas in a future version. Use
    5672 pandas.concat instead. 
    5673 self.df = self.df.append(df_add, ignore_index=True) 
    5674 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5675 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5676 is deprecated and will be removed from pandas in a future version. Use
    5677 pandas.concat instead. 
    5678 self.df = self.df.append(df_add, ignore_index=True) 
    5679 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5680 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5681 is deprecated and will be removed from pandas in a future version. Use
    5682 pandas.concat instead. 
    5683 self.df = self.df.append(df_add, ignore_index=True) 
    5684 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5685 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5686 is deprecated and will be removed from pandas in a future version. Use
    5687 pandas.concat instead. 
    5688 self.df = self.df.append(df_add, ignore_index=True) 
    5689 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5690 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5691 is deprecated and will be removed from pandas in a future version. Use
    5692 pandas.concat instead. 
    5693 self.df = self.df.append(df_add, ignore_index=True) 
    5694 Unique peptide pairs with pseudobonds: 39 
    5695 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5696 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5697 is deprecated and will be removed from pandas in a future version. Use
    5698 pandas.concat instead. 
    5699 self.df = self.df.append(df_add, ignore_index=True) 
    5700 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5701 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5702 is deprecated and will be removed from pandas in a future version. Use
    5703 pandas.concat instead. 
    5704 self.df = self.df.append(df_add, ignore_index=True) 
    5705 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5706 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5707 is deprecated and will be removed from pandas in a future version. Use
    5708 pandas.concat instead. 
    5709 self.df = self.df.append(df_add, ignore_index=True) 
    5710 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5711 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5712 is deprecated and will be removed from pandas in a future version. Use
    5713 pandas.concat instead. 
    5714 self.df = self.df.append(df_add, ignore_index=True) 
    5715 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5716 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5717 is deprecated and will be removed from pandas in a future version. Use
    5718 pandas.concat instead. 
    5719 self.df = self.df.append(df_add, ignore_index=True) 
    5720 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5721 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5722 is deprecated and will be removed from pandas in a future version. Use
    5723 pandas.concat instead. 
    5724 self.df = self.df.append(df_add, ignore_index=True) 
    5725 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5726 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5727 is deprecated and will be removed from pandas in a future version. Use
    5728 pandas.concat instead. 
    5729 self.df = self.df.append(df_add, ignore_index=True) 
    5730 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5731 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5732 is deprecated and will be removed from pandas in a future version. Use
    5733 pandas.concat instead. 
    5734 self.df = self.df.append(df_add, ignore_index=True) 
    5735 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5736 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5737 is deprecated and will be removed from pandas in a future version. Use
    5738 pandas.concat instead. 
    5739 self.df = self.df.append(df_add, ignore_index=True) 
    5740 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5741 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5742 is deprecated and will be removed from pandas in a future version. Use
    5743 pandas.concat instead. 
    5744 self.df = self.df.append(df_add, ignore_index=True) 
    5745 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5746 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5747 is deprecated and will be removed from pandas in a future version. Use
    5748 pandas.concat instead. 
    5749 self.df = self.df.append(df_add, ignore_index=True) 
    5750 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5751 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5752 is deprecated and will be removed from pandas in a future version. Use
    5753 pandas.concat instead. 
    5754 self.df = self.df.append(df_add, ignore_index=True) 
    5755 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5756 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5757 is deprecated and will be removed from pandas in a future version. Use
    5758 pandas.concat instead. 
    5759 self.df = self.df.append(df_add, ignore_index=True) 
    5760 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5761 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5762 is deprecated and will be removed from pandas in a future version. Use
    5763 pandas.concat instead. 
    5764 self.df = self.df.append(df_add, ignore_index=True) 
    5765 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5766 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5767 is deprecated and will be removed from pandas in a future version. Use
    5768 pandas.concat instead. 
    5769 self.df = self.df.append(df_add, ignore_index=True) 
    5770 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5771 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5772 is deprecated and will be removed from pandas in a future version. Use
    5773 pandas.concat instead. 
    5774 self.df = self.df.append(df_add, ignore_index=True) 
    5775 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5776 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5777 is deprecated and will be removed from pandas in a future version. Use
    5778 pandas.concat instead. 
    5779 self.df = self.df.append(df_add, ignore_index=True) 
    5780 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5781 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5782 is deprecated and will be removed from pandas in a future version. Use
    5783 pandas.concat instead. 
    5784 self.df = self.df.append(df_add, ignore_index=True) 
    5785 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5786 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5787 is deprecated and will be removed from pandas in a future version. Use
    5788 pandas.concat instead. 
    5789 self.df = self.df.append(df_add, ignore_index=True) 
    5790 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5791 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5792 is deprecated and will be removed from pandas in a future version. Use
    5793 pandas.concat instead. 
    5794 self.df = self.df.append(df_add, ignore_index=True) 
    5795 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5796 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5797 is deprecated and will be removed from pandas in a future version. Use
    5798 pandas.concat instead. 
    5799 self.df = self.df.append(df_add, ignore_index=True) 
    5800 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5801 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5802 is deprecated and will be removed from pandas in a future version. Use
    5803 pandas.concat instead. 
    5804 self.df = self.df.append(df_add, ignore_index=True) 
    5805 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5806 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5807 is deprecated and will be removed from pandas in a future version. Use
    5808 pandas.concat instead. 
    5809 self.df = self.df.append(df_add, ignore_index=True) 
    5810 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5811 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5812 is deprecated and will be removed from pandas in a future version. Use
    5813 pandas.concat instead. 
    5814 self.df = self.df.append(df_add, ignore_index=True) 
    5815 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5816 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5817 is deprecated and will be removed from pandas in a future version. Use
    5818 pandas.concat instead. 
    5819 self.df = self.df.append(df_add, ignore_index=True) 
    5820 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5821 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5822 is deprecated and will be removed from pandas in a future version. Use
    5823 pandas.concat instead. 
    5824 self.df = self.df.append(df_add, ignore_index=True) 
    5825 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5826 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5827 is deprecated and will be removed from pandas in a future version. Use
    5828 pandas.concat instead. 
    5829 self.df = self.df.append(df_add, ignore_index=True) 
    5830 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5831 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5832 is deprecated and will be removed from pandas in a future version. Use
    5833 pandas.concat instead. 
    5834 self.df = self.df.append(df_add, ignore_index=True) 
    5835 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5836 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5837 is deprecated and will be removed from pandas in a future version. Use
    5838 pandas.concat instead. 
    5839 self.df = self.df.append(df_add, ignore_index=True) 
    5840 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5841 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5842 is deprecated and will be removed from pandas in a future version. Use
    5843 pandas.concat instead. 
    5844 self.df = self.df.append(df_add, ignore_index=True) 
    5845 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5846 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5847 is deprecated and will be removed from pandas in a future version. Use
    5848 pandas.concat instead. 
    5849 self.df = self.df.append(df_add, ignore_index=True) 
    5850 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5851 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5852 is deprecated and will be removed from pandas in a future version. Use
    5853 pandas.concat instead. 
    5854 self.df = self.df.append(df_add, ignore_index=True) 
    5855 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5856 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5857 is deprecated and will be removed from pandas in a future version. Use
    5858 pandas.concat instead. 
    5859 self.df = self.df.append(df_add, ignore_index=True) 
    5860 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5861 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5862 is deprecated and will be removed from pandas in a future version. Use
    5863 pandas.concat instead. 
    5864 self.df = self.df.append(df_add, ignore_index=True) 
    5865 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5866 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5867 is deprecated and will be removed from pandas in a future version. Use
    5868 pandas.concat instead. 
    5869 self.df = self.df.append(df_add, ignore_index=True) 
    5870 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5871 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5872 is deprecated and will be removed from pandas in a future version. Use
    5873 pandas.concat instead. 
    5874 self.df = self.df.append(df_add, ignore_index=True) 
    5875 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5876 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5877 is deprecated and will be removed from pandas in a future version. Use
    5878 pandas.concat instead. 
    5879 self.df = self.df.append(df_add, ignore_index=True) 
    5880 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5881 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5882 is deprecated and will be removed from pandas in a future version. Use
    5883 pandas.concat instead. 
    5884 self.df = self.df.append(df_add, ignore_index=True) 
    5885 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5886 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    5887 is deprecated and will be removed from pandas in a future version. Use
    5888 pandas.concat instead. 
    5889 self.df = self.df.append(df_add, ignore_index=True) 
    5890 Pseudobonds are stored in
    5891 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.pb 
    5892 Mapping information is stored in
    5893 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1)_1,2.tsv 
    5894 Alignment identifier is 1 
    5895 Alignment identifier is 2 
    5896 Alignment identifier is 2 
    5897 Alignment identifier is 2 
    5898 
    5899 > ui mousemode right select
    5900 
    5901 > select clear
    5902 
    5903 Alignment identifier is 1/A 
    5904 Alignment identifier is 1/B 
    5905 Alignment identifier is 1/C 
    5906 Alignment identifier is 1 
    5907 
    5908 > close #2-3#1
    5909 
    5910 > open "M:/_Steve021/Matrigel/New docking- for
    5911 > commentary/2jd4_v2-pdbtools.pdb" "M:/_Steve021/Matrigel/New docking- for
    5912 > commentary/5mc9_v2-pdbtools.pdb"
    5913 
    5914 Chain information for 2jd4_v2-pdbtools.pdb #1 
    5915 --- 
    5916 Chain | Description 
    5917 A | No description available 
    5918  
    5919 Chain information for 5mc9_v2-pdbtools.pdb #2 
    5920 --- 
    5921 Chain | Description 
    5922 A | No description available 
    5923 B | No description available 
    5924 C | No description available 
    5925  
    5926 
    5927 > select #1
    5928 
    5929 3054 atoms, 2946 bonds, 540 residues, 1 model selected 
    5930 Drag select of 5 atoms, 142 residues, 4 bonds 
    5931 
    5932 > select #1
    5933 
    5934 3054 atoms, 2946 bonds, 540 residues, 1 model selected 
    5935 
    5936 > ~select #1
    5937 
    5938 Nothing selected 
    5939 
    5940 > select #1
    5941 
    5942 3054 atoms, 2946 bonds, 540 residues, 1 model selected 
    5943 
    5944 > ui mousemode right "translate selected models"
    5945 
    5946 > view matrix models #1,1,0,0,-48.147,0,1,0,-69.75,0,0,1,21.525
    5947 
    5948 > ui mousemode right "rotate selected models"
    5949 
    5950 > view matrix models
    5951 > #1,-0.33603,-0.55596,0.76025,-7.9408,-0.46807,-0.60188,-0.64703,-13.359,0.81731,-0.57327,-0.057977,24.39
    5952 
    5953 > ui mousemode right "translate selected models"
    5954 
    5955 > view matrix models
    5956 > #1,-0.33603,-0.55596,0.76025,-6.6561,-0.46807,-0.60188,-0.64703,-10.036,0.81731,-0.57327,-0.057977,15.936
    5957 
    5958 > ~select #1
    5959 
    5960 Nothing selected 
    5961  
    5962 Peptide pair mapping of PD evidence file:
    5963 C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx 
    5964 Traceback (most recent call last): 
    5965 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5966 packages\chimerax\xmas\tool.py", line 142, in <lambda> 
    5967 function = lambda _, s=selector, t=key: self.map_button_clicked(s, 
    5968 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5969 packages\chimerax\xmas\tool.py", line 844, in map_button_clicked 
    5970 self.map_crosslinks(self.checked_models, checked_files) 
    5971 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5972 packages\chimerax\xmas\tool.py", line 865, in map_crosslinks 
    5973 dataframe = pd.read_excel(evidence_file) 
    5974 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5975 packages\pandas\util\\_decorators.py", line 311, in wrapper 
    5976 return func(*args, **kwargs) 
    5977 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5978 packages\pandas\io\excel\\_base.py", line 457, in read_excel 
    5979 io = ExcelFile(io, storage_options=storage_options, engine=engine) 
    5980 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5981 packages\pandas\io\excel\\_base.py", line 1376, in __init__ 
    5982 ext = inspect_excel_format( 
    5983 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5984 packages\pandas\io\excel\\_base.py", line 1250, in inspect_excel_format 
    5985 with get_handle( 
    5986 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5987 packages\pandas\io\common.py", line 798, in get_handle 
    5988 handle = open(handle, ioargs.mode) 
    5989 FileNotFoundError: [Errno 2] No such file or directory:
    5990 'C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx' 
    5991  
    5992 FileNotFoundError: [Errno 2] No such file or directory:
    5993 'C:/Users/Steve021/Desktop/matrigel_crosslinking/20220325_matrigel_crosslinked_02/20210406_EX2_UM3_Steve021_SA_MG3_9_01-(1).xlsx' 
    5994  
    5995 File "C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    5996 packages\pandas\io\common.py", line 798, in get_handle 
    5997 handle = open(handle, ioargs.mode) 
    5998  
    5999 See log for complete Python traceback. 
    6000  
    6001 
    6002 > ui tool show XMAS
    6003 
    6004  
    6005 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    6006 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_combined-consensus-all-
    6007 files.xlsx 
    6008 Unique peptide pairs: 147 out of 147 
    6009 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6010 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6011 is deprecated and will be removed from pandas in a future version. Use
    6012 pandas.concat instead. 
    6013 self.df = self.df.append(df_add, ignore_index=True) 
    6014 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6015 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6016 is deprecated and will be removed from pandas in a future version. Use
    6017 pandas.concat instead. 
    6018 self.df = self.df.append(df_add, ignore_index=True) 
    6019 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6020 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6021 is deprecated and will be removed from pandas in a future version. Use
    6022 pandas.concat instead. 
    6023 self.df = self.df.append(df_add, ignore_index=True) 
    6024 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6025 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6026 is deprecated and will be removed from pandas in a future version. Use
    6027 pandas.concat instead. 
    6028 self.df = self.df.append(df_add, ignore_index=True) 
    6029 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6030 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6031 is deprecated and will be removed from pandas in a future version. Use
    6032 pandas.concat instead. 
    6033 self.df = self.df.append(df_add, ignore_index=True) 
    6034 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6035 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6036 is deprecated and will be removed from pandas in a future version. Use
    6037 pandas.concat instead. 
    6038 self.df = self.df.append(df_add, ignore_index=True) 
    6039 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6040 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6041 is deprecated and will be removed from pandas in a future version. Use
    6042 pandas.concat instead. 
    6043 self.df = self.df.append(df_add, ignore_index=True) 
    6044 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6045 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6046 is deprecated and will be removed from pandas in a future version. Use
    6047 pandas.concat instead. 
    6048 self.df = self.df.append(df_add, ignore_index=True) 
    6049 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6050 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6051 is deprecated and will be removed from pandas in a future version. Use
    6052 pandas.concat instead. 
    6053 self.df = self.df.append(df_add, ignore_index=True) 
    6054 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6055 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6056 is deprecated and will be removed from pandas in a future version. Use
    6057 pandas.concat instead. 
    6058 self.df = self.df.append(df_add, ignore_index=True) 
    6059 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6060 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6061 is deprecated and will be removed from pandas in a future version. Use
    6062 pandas.concat instead. 
    6063 self.df = self.df.append(df_add, ignore_index=True) 
    6064 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6065 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6066 is deprecated and will be removed from pandas in a future version. Use
    6067 pandas.concat instead. 
    6068 self.df = self.df.append(df_add, ignore_index=True) 
    6069 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6070 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6071 is deprecated and will be removed from pandas in a future version. Use
    6072 pandas.concat instead. 
    6073 self.df = self.df.append(df_add, ignore_index=True) 
    6074 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6075 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6076 is deprecated and will be removed from pandas in a future version. Use
    6077 pandas.concat instead. 
    6078 self.df = self.df.append(df_add, ignore_index=True) 
    6079 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6080 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6081 is deprecated and will be removed from pandas in a future version. Use
    6082 pandas.concat instead. 
    6083 self.df = self.df.append(df_add, ignore_index=True) 
    6084 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6085 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6086 is deprecated and will be removed from pandas in a future version. Use
    6087 pandas.concat instead. 
    6088 self.df = self.df.append(df_add, ignore_index=True) 
    6089 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6090 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6091 is deprecated and will be removed from pandas in a future version. Use
    6092 pandas.concat instead. 
    6093 self.df = self.df.append(df_add, ignore_index=True) 
    6094 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6095 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6096 is deprecated and will be removed from pandas in a future version. Use
    6097 pandas.concat instead. 
    6098 self.df = self.df.append(df_add, ignore_index=True) 
    6099 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6100 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6101 is deprecated and will be removed from pandas in a future version. Use
    6102 pandas.concat instead. 
    6103 self.df = self.df.append(df_add, ignore_index=True) 
    6104 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6105 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6106 is deprecated and will be removed from pandas in a future version. Use
    6107 pandas.concat instead. 
    6108 self.df = self.df.append(df_add, ignore_index=True) 
    6109 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6110 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6111 is deprecated and will be removed from pandas in a future version. Use
    6112 pandas.concat instead. 
    6113 self.df = self.df.append(df_add, ignore_index=True) 
    6114 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6115 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6116 is deprecated and will be removed from pandas in a future version. Use
    6117 pandas.concat instead. 
    6118 self.df = self.df.append(df_add, ignore_index=True) 
    6119 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6120 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6121 is deprecated and will be removed from pandas in a future version. Use
    6122 pandas.concat instead. 
    6123 self.df = self.df.append(df_add, ignore_index=True) 
    6124 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6125 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6126 is deprecated and will be removed from pandas in a future version. Use
    6127 pandas.concat instead. 
    6128 self.df = self.df.append(df_add, ignore_index=True) 
    6129 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6130 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6131 is deprecated and will be removed from pandas in a future version. Use
    6132 pandas.concat instead. 
    6133 self.df = self.df.append(df_add, ignore_index=True) 
    6134 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6135 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6136 is deprecated and will be removed from pandas in a future version. Use
    6137 pandas.concat instead. 
    6138 self.df = self.df.append(df_add, ignore_index=True) 
    6139 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6140 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6141 is deprecated and will be removed from pandas in a future version. Use
    6142 pandas.concat instead. 
    6143 self.df = self.df.append(df_add, ignore_index=True) 
    6144 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6145 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6146 is deprecated and will be removed from pandas in a future version. Use
    6147 pandas.concat instead. 
    6148 self.df = self.df.append(df_add, ignore_index=True) 
    6149 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6150 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6151 is deprecated and will be removed from pandas in a future version. Use
    6152 pandas.concat instead. 
    6153 self.df = self.df.append(df_add, ignore_index=True) 
    6154 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6155 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6156 is deprecated and will be removed from pandas in a future version. Use
    6157 pandas.concat instead. 
    6158 self.df = self.df.append(df_add, ignore_index=True) 
    6159 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6160 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6161 is deprecated and will be removed from pandas in a future version. Use
    6162 pandas.concat instead. 
    6163 self.df = self.df.append(df_add, ignore_index=True) 
    6164 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6165 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6166 is deprecated and will be removed from pandas in a future version. Use
    6167 pandas.concat instead. 
    6168 self.df = self.df.append(df_add, ignore_index=True) 
    6169 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6170 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6171 is deprecated and will be removed from pandas in a future version. Use
    6172 pandas.concat instead. 
    6173 self.df = self.df.append(df_add, ignore_index=True) 
    6174 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6175 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6176 is deprecated and will be removed from pandas in a future version. Use
    6177 pandas.concat instead. 
    6178 self.df = self.df.append(df_add, ignore_index=True) 
    6179 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6180 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6181 is deprecated and will be removed from pandas in a future version. Use
    6182 pandas.concat instead. 
    6183 self.df = self.df.append(df_add, ignore_index=True) 
    6184 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6185 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6186 is deprecated and will be removed from pandas in a future version. Use
    6187 pandas.concat instead. 
    6188 self.df = self.df.append(df_add, ignore_index=True) 
    6189 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6190 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6191 is deprecated and will be removed from pandas in a future version. Use
    6192 pandas.concat instead. 
    6193 self.df = self.df.append(df_add, ignore_index=True) 
    6194 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6195 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6196 is deprecated and will be removed from pandas in a future version. Use
    6197 pandas.concat instead. 
    6198 self.df = self.df.append(df_add, ignore_index=True) 
    6199 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6200 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6201 is deprecated and will be removed from pandas in a future version. Use
    6202 pandas.concat instead. 
    6203 self.df = self.df.append(df_add, ignore_index=True) 
    6204 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6205 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6206 is deprecated and will be removed from pandas in a future version. Use
    6207 pandas.concat instead. 
    6208 self.df = self.df.append(df_add, ignore_index=True) 
    6209 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6210 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6211 is deprecated and will be removed from pandas in a future version. Use
    6212 pandas.concat instead. 
    6213 self.df = self.df.append(df_add, ignore_index=True) 
    6214 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6215 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6216 is deprecated and will be removed from pandas in a future version. Use
    6217 pandas.concat instead. 
    6218 self.df = self.df.append(df_add, ignore_index=True) 
    6219 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6220 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6221 is deprecated and will be removed from pandas in a future version. Use
    6222 pandas.concat instead. 
    6223 self.df = self.df.append(df_add, ignore_index=True) 
    6224 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6225 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6226 is deprecated and will be removed from pandas in a future version. Use
    6227 pandas.concat instead. 
    6228 self.df = self.df.append(df_add, ignore_index=True) 
    6229 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6230 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6231 is deprecated and will be removed from pandas in a future version. Use
    6232 pandas.concat instead. 
    6233 self.df = self.df.append(df_add, ignore_index=True) 
    6234 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6235 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6236 is deprecated and will be removed from pandas in a future version. Use
    6237 pandas.concat instead. 
    6238 self.df = self.df.append(df_add, ignore_index=True) 
    6239 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6240 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6241 is deprecated and will be removed from pandas in a future version. Use
    6242 pandas.concat instead. 
    6243 self.df = self.df.append(df_add, ignore_index=True) 
    6244 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6245 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6246 is deprecated and will be removed from pandas in a future version. Use
    6247 pandas.concat instead. 
    6248 self.df = self.df.append(df_add, ignore_index=True) 
    6249 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6250 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6251 is deprecated and will be removed from pandas in a future version. Use
    6252 pandas.concat instead. 
    6253 self.df = self.df.append(df_add, ignore_index=True) 
    6254 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6255 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6256 is deprecated and will be removed from pandas in a future version. Use
    6257 pandas.concat instead. 
    6258 self.df = self.df.append(df_add, ignore_index=True) 
    6259 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6260 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6261 is deprecated and will be removed from pandas in a future version. Use
    6262 pandas.concat instead. 
    6263 self.df = self.df.append(df_add, ignore_index=True) 
    6264 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6265 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6266 is deprecated and will be removed from pandas in a future version. Use
    6267 pandas.concat instead. 
    6268 self.df = self.df.append(df_add, ignore_index=True) 
    6269 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6270 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6271 is deprecated and will be removed from pandas in a future version. Use
    6272 pandas.concat instead. 
    6273 self.df = self.df.append(df_add, ignore_index=True) 
    6274 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6275 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6276 is deprecated and will be removed from pandas in a future version. Use
    6277 pandas.concat instead. 
    6278 self.df = self.df.append(df_add, ignore_index=True) 
    6279 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6280 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6281 is deprecated and will be removed from pandas in a future version. Use
    6282 pandas.concat instead. 
    6283 self.df = self.df.append(df_add, ignore_index=True) 
    6284 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6285 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6286 is deprecated and will be removed from pandas in a future version. Use
    6287 pandas.concat instead. 
    6288 self.df = self.df.append(df_add, ignore_index=True) 
    6289 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6290 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6291 is deprecated and will be removed from pandas in a future version. Use
    6292 pandas.concat instead. 
    6293 self.df = self.df.append(df_add, ignore_index=True) 
    6294 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6295 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6296 is deprecated and will be removed from pandas in a future version. Use
    6297 pandas.concat instead. 
    6298 self.df = self.df.append(df_add, ignore_index=True) 
    6299 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6300 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6301 is deprecated and will be removed from pandas in a future version. Use
    6302 pandas.concat instead. 
    6303 self.df = self.df.append(df_add, ignore_index=True) 
    6304 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6305 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6306 is deprecated and will be removed from pandas in a future version. Use
    6307 pandas.concat instead. 
    6308 self.df = self.df.append(df_add, ignore_index=True) 
    6309 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6310 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6311 is deprecated and will be removed from pandas in a future version. Use
    6312 pandas.concat instead. 
    6313 self.df = self.df.append(df_add, ignore_index=True) 
    6314 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6315 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6316 is deprecated and will be removed from pandas in a future version. Use
    6317 pandas.concat instead. 
    6318 self.df = self.df.append(df_add, ignore_index=True) 
    6319 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6320 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6321 is deprecated and will be removed from pandas in a future version. Use
    6322 pandas.concat instead. 
    6323 self.df = self.df.append(df_add, ignore_index=True) 
    6324 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6325 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6326 is deprecated and will be removed from pandas in a future version. Use
    6327 pandas.concat instead. 
    6328 self.df = self.df.append(df_add, ignore_index=True) 
    6329 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6330 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6331 is deprecated and will be removed from pandas in a future version. Use
    6332 pandas.concat instead. 
    6333 self.df = self.df.append(df_add, ignore_index=True) 
    6334 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6335 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6336 is deprecated and will be removed from pandas in a future version. Use
    6337 pandas.concat instead. 
    6338 self.df = self.df.append(df_add, ignore_index=True) 
    6339 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6340 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6341 is deprecated and will be removed from pandas in a future version. Use
    6342 pandas.concat instead. 
    6343 self.df = self.df.append(df_add, ignore_index=True) 
    6344 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6345 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6346 is deprecated and will be removed from pandas in a future version. Use
    6347 pandas.concat instead. 
    6348 self.df = self.df.append(df_add, ignore_index=True) 
    6349 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6350 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6351 is deprecated and will be removed from pandas in a future version. Use
    6352 pandas.concat instead. 
    6353 self.df = self.df.append(df_add, ignore_index=True) 
    6354 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6355 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6356 is deprecated and will be removed from pandas in a future version. Use
    6357 pandas.concat instead. 
    6358 self.df = self.df.append(df_add, ignore_index=True) 
    6359 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6360 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6361 is deprecated and will be removed from pandas in a future version. Use
    6362 pandas.concat instead. 
    6363 self.df = self.df.append(df_add, ignore_index=True) 
    6364 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6365 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6366 is deprecated and will be removed from pandas in a future version. Use
    6367 pandas.concat instead. 
    6368 self.df = self.df.append(df_add, ignore_index=True) 
    6369 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6370 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6371 is deprecated and will be removed from pandas in a future version. Use
    6372 pandas.concat instead. 
    6373 self.df = self.df.append(df_add, ignore_index=True) 
    6374 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6375 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6376 is deprecated and will be removed from pandas in a future version. Use
    6377 pandas.concat instead. 
    6378 self.df = self.df.append(df_add, ignore_index=True) 
    6379 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6380 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6381 is deprecated and will be removed from pandas in a future version. Use
    6382 pandas.concat instead. 
    6383 self.df = self.df.append(df_add, ignore_index=True) 
    6384 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6385 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6386 is deprecated and will be removed from pandas in a future version. Use
    6387 pandas.concat instead. 
    6388 self.df = self.df.append(df_add, ignore_index=True) 
    6389 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6390 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6391 is deprecated and will be removed from pandas in a future version. Use
    6392 pandas.concat instead. 
    6393 self.df = self.df.append(df_add, ignore_index=True) 
    6394 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6395 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6396 is deprecated and will be removed from pandas in a future version. Use
    6397 pandas.concat instead. 
    6398 self.df = self.df.append(df_add, ignore_index=True) 
    6399 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6400 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6401 is deprecated and will be removed from pandas in a future version. Use
    6402 pandas.concat instead. 
    6403 self.df = self.df.append(df_add, ignore_index=True) 
    6404 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6405 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6406 is deprecated and will be removed from pandas in a future version. Use
    6407 pandas.concat instead. 
    6408 self.df = self.df.append(df_add, ignore_index=True) 
    6409 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6410 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6411 is deprecated and will be removed from pandas in a future version. Use
    6412 pandas.concat instead. 
    6413 self.df = self.df.append(df_add, ignore_index=True) 
    6414 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6415 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6416 is deprecated and will be removed from pandas in a future version. Use
    6417 pandas.concat instead. 
    6418 self.df = self.df.append(df_add, ignore_index=True) 
    6419 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6420 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6421 is deprecated and will be removed from pandas in a future version. Use
    6422 pandas.concat instead. 
    6423 self.df = self.df.append(df_add, ignore_index=True) 
    6424 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6425 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6426 is deprecated and will be removed from pandas in a future version. Use
    6427 pandas.concat instead. 
    6428 self.df = self.df.append(df_add, ignore_index=True) 
    6429 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6430 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6431 is deprecated and will be removed from pandas in a future version. Use
    6432 pandas.concat instead. 
    6433 self.df = self.df.append(df_add, ignore_index=True) 
    6434 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6435 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6436 is deprecated and will be removed from pandas in a future version. Use
    6437 pandas.concat instead. 
    6438 self.df = self.df.append(df_add, ignore_index=True) 
    6439 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6440 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6441 is deprecated and will be removed from pandas in a future version. Use
    6442 pandas.concat instead. 
    6443 self.df = self.df.append(df_add, ignore_index=True) 
    6444 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6445 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6446 is deprecated and will be removed from pandas in a future version. Use
    6447 pandas.concat instead. 
    6448 self.df = self.df.append(df_add, ignore_index=True) 
    6449 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6450 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6451 is deprecated and will be removed from pandas in a future version. Use
    6452 pandas.concat instead. 
    6453 self.df = self.df.append(df_add, ignore_index=True) 
    6454 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6455 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6456 is deprecated and will be removed from pandas in a future version. Use
    6457 pandas.concat instead. 
    6458 self.df = self.df.append(df_add, ignore_index=True) 
    6459 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6460 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6461 is deprecated and will be removed from pandas in a future version. Use
    6462 pandas.concat instead. 
    6463 self.df = self.df.append(df_add, ignore_index=True) 
    6464 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6465 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6466 is deprecated and will be removed from pandas in a future version. Use
    6467 pandas.concat instead. 
    6468 self.df = self.df.append(df_add, ignore_index=True) 
    6469 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6470 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6471 is deprecated and will be removed from pandas in a future version. Use
    6472 pandas.concat instead. 
    6473 self.df = self.df.append(df_add, ignore_index=True) 
    6474 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6475 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6476 is deprecated and will be removed from pandas in a future version. Use
    6477 pandas.concat instead. 
    6478 self.df = self.df.append(df_add, ignore_index=True) 
    6479 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6480 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6481 is deprecated and will be removed from pandas in a future version. Use
    6482 pandas.concat instead. 
    6483 self.df = self.df.append(df_add, ignore_index=True) 
    6484 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6485 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6486 is deprecated and will be removed from pandas in a future version. Use
    6487 pandas.concat instead. 
    6488 self.df = self.df.append(df_add, ignore_index=True) 
    6489 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6490 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6491 is deprecated and will be removed from pandas in a future version. Use
    6492 pandas.concat instead. 
    6493 self.df = self.df.append(df_add, ignore_index=True) 
    6494 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6495 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6496 is deprecated and will be removed from pandas in a future version. Use
    6497 pandas.concat instead. 
    6498 self.df = self.df.append(df_add, ignore_index=True) 
    6499 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6500 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6501 is deprecated and will be removed from pandas in a future version. Use
    6502 pandas.concat instead. 
    6503 self.df = self.df.append(df_add, ignore_index=True) 
    6504 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6505 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6506 is deprecated and will be removed from pandas in a future version. Use
    6507 pandas.concat instead. 
    6508 self.df = self.df.append(df_add, ignore_index=True) 
    6509 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6510 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6511 is deprecated and will be removed from pandas in a future version. Use
    6512 pandas.concat instead. 
    6513 self.df = self.df.append(df_add, ignore_index=True) 
    6514 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6515 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6516 is deprecated and will be removed from pandas in a future version. Use
    6517 pandas.concat instead. 
    6518 self.df = self.df.append(df_add, ignore_index=True) 
    6519 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6520 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6521 is deprecated and will be removed from pandas in a future version. Use
    6522 pandas.concat instead. 
    6523 self.df = self.df.append(df_add, ignore_index=True) 
    6524 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6525 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6526 is deprecated and will be removed from pandas in a future version. Use
    6527 pandas.concat instead. 
    6528 self.df = self.df.append(df_add, ignore_index=True) 
    6529 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6530 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6531 is deprecated and will be removed from pandas in a future version. Use
    6532 pandas.concat instead. 
    6533 self.df = self.df.append(df_add, ignore_index=True) 
    6534 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6535 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6536 is deprecated and will be removed from pandas in a future version. Use
    6537 pandas.concat instead. 
    6538 self.df = self.df.append(df_add, ignore_index=True) 
    6539 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6540 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6541 is deprecated and will be removed from pandas in a future version. Use
    6542 pandas.concat instead. 
    6543 self.df = self.df.append(df_add, ignore_index=True) 
    6544 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6545 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6546 is deprecated and will be removed from pandas in a future version. Use
    6547 pandas.concat instead. 
    6548 self.df = self.df.append(df_add, ignore_index=True) 
    6549 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6550 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6551 is deprecated and will be removed from pandas in a future version. Use
    6552 pandas.concat instead. 
    6553 self.df = self.df.append(df_add, ignore_index=True) 
    6554 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6555 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6556 is deprecated and will be removed from pandas in a future version. Use
    6557 pandas.concat instead. 
    6558 self.df = self.df.append(df_add, ignore_index=True) 
    6559 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6560 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6561 is deprecated and will be removed from pandas in a future version. Use
    6562 pandas.concat instead. 
    6563 self.df = self.df.append(df_add, ignore_index=True) 
    6564 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6565 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6566 is deprecated and will be removed from pandas in a future version. Use
    6567 pandas.concat instead. 
    6568 self.df = self.df.append(df_add, ignore_index=True) 
    6569 Unique peptide pairs with pseudobonds: 35 
    6570 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6571 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6572 is deprecated and will be removed from pandas in a future version. Use
    6573 pandas.concat instead. 
    6574 self.df = self.df.append(df_add, ignore_index=True) 
    6575 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6576 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6577 is deprecated and will be removed from pandas in a future version. Use
    6578 pandas.concat instead. 
    6579 self.df = self.df.append(df_add, ignore_index=True) 
    6580 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6581 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6582 is deprecated and will be removed from pandas in a future version. Use
    6583 pandas.concat instead. 
    6584 self.df = self.df.append(df_add, ignore_index=True) 
    6585 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6586 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6587 is deprecated and will be removed from pandas in a future version. Use
    6588 pandas.concat instead. 
    6589 self.df = self.df.append(df_add, ignore_index=True) 
    6590 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6591 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6592 is deprecated and will be removed from pandas in a future version. Use
    6593 pandas.concat instead. 
    6594 self.df = self.df.append(df_add, ignore_index=True) 
    6595 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6596 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6597 is deprecated and will be removed from pandas in a future version. Use
    6598 pandas.concat instead. 
    6599 self.df = self.df.append(df_add, ignore_index=True) 
    6600 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6601 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6602 is deprecated and will be removed from pandas in a future version. Use
    6603 pandas.concat instead. 
    6604 self.df = self.df.append(df_add, ignore_index=True) 
    6605 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6606 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6607 is deprecated and will be removed from pandas in a future version. Use
    6608 pandas.concat instead. 
    6609 self.df = self.df.append(df_add, ignore_index=True) 
    6610 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6611 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6612 is deprecated and will be removed from pandas in a future version. Use
    6613 pandas.concat instead. 
    6614 self.df = self.df.append(df_add, ignore_index=True) 
    6615 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6616 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6617 is deprecated and will be removed from pandas in a future version. Use
    6618 pandas.concat instead. 
    6619 self.df = self.df.append(df_add, ignore_index=True) 
    6620 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6621 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6622 is deprecated and will be removed from pandas in a future version. Use
    6623 pandas.concat instead. 
    6624 self.df = self.df.append(df_add, ignore_index=True) 
    6625 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6626 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6627 is deprecated and will be removed from pandas in a future version. Use
    6628 pandas.concat instead. 
    6629 self.df = self.df.append(df_add, ignore_index=True) 
    6630 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6631 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6632 is deprecated and will be removed from pandas in a future version. Use
    6633 pandas.concat instead. 
    6634 self.df = self.df.append(df_add, ignore_index=True) 
    6635 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6636 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6637 is deprecated and will be removed from pandas in a future version. Use
    6638 pandas.concat instead. 
    6639 self.df = self.df.append(df_add, ignore_index=True) 
    6640 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6641 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6642 is deprecated and will be removed from pandas in a future version. Use
    6643 pandas.concat instead. 
    6644 self.df = self.df.append(df_add, ignore_index=True) 
    6645 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6646 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6647 is deprecated and will be removed from pandas in a future version. Use
    6648 pandas.concat instead. 
    6649 self.df = self.df.append(df_add, ignore_index=True) 
    6650 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6651 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6652 is deprecated and will be removed from pandas in a future version. Use
    6653 pandas.concat instead. 
    6654 self.df = self.df.append(df_add, ignore_index=True) 
    6655 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6656 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6657 is deprecated and will be removed from pandas in a future version. Use
    6658 pandas.concat instead. 
    6659 self.df = self.df.append(df_add, ignore_index=True) 
    6660 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6661 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6662 is deprecated and will be removed from pandas in a future version. Use
    6663 pandas.concat instead. 
    6664 self.df = self.df.append(df_add, ignore_index=True) 
    6665 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6666 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6667 is deprecated and will be removed from pandas in a future version. Use
    6668 pandas.concat instead. 
    6669 self.df = self.df.append(df_add, ignore_index=True) 
    6670 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6671 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6672 is deprecated and will be removed from pandas in a future version. Use
    6673 pandas.concat instead. 
    6674 self.df = self.df.append(df_add, ignore_index=True) 
    6675 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6676 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6677 is deprecated and will be removed from pandas in a future version. Use
    6678 pandas.concat instead. 
    6679 self.df = self.df.append(df_add, ignore_index=True) 
    6680 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6681 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6682 is deprecated and will be removed from pandas in a future version. Use
    6683 pandas.concat instead. 
    6684 self.df = self.df.append(df_add, ignore_index=True) 
    6685 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6686 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6687 is deprecated and will be removed from pandas in a future version. Use
    6688 pandas.concat instead. 
    6689 self.df = self.df.append(df_add, ignore_index=True) 
    6690 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6691 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6692 is deprecated and will be removed from pandas in a future version. Use
    6693 pandas.concat instead. 
    6694 self.df = self.df.append(df_add, ignore_index=True) 
    6695 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6696 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6697 is deprecated and will be removed from pandas in a future version. Use
    6698 pandas.concat instead. 
    6699 self.df = self.df.append(df_add, ignore_index=True) 
    6700 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6701 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6702 is deprecated and will be removed from pandas in a future version. Use
    6703 pandas.concat instead. 
    6704 self.df = self.df.append(df_add, ignore_index=True) 
    6705 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6706 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6707 is deprecated and will be removed from pandas in a future version. Use
    6708 pandas.concat instead. 
    6709 self.df = self.df.append(df_add, ignore_index=True) 
    6710 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6711 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6712 is deprecated and will be removed from pandas in a future version. Use
    6713 pandas.concat instead. 
    6714 self.df = self.df.append(df_add, ignore_index=True) 
    6715 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6716 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6717 is deprecated and will be removed from pandas in a future version. Use
    6718 pandas.concat instead. 
    6719 self.df = self.df.append(df_add, ignore_index=True) 
    6720 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6721 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6722 is deprecated and will be removed from pandas in a future version. Use
    6723 pandas.concat instead. 
    6724 self.df = self.df.append(df_add, ignore_index=True) 
    6725 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6726 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6727 is deprecated and will be removed from pandas in a future version. Use
    6728 pandas.concat instead. 
    6729 self.df = self.df.append(df_add, ignore_index=True) 
    6730 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6731 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6732 is deprecated and will be removed from pandas in a future version. Use
    6733 pandas.concat instead. 
    6734 self.df = self.df.append(df_add, ignore_index=True) 
    6735 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6736 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6737 is deprecated and will be removed from pandas in a future version. Use
    6738 pandas.concat instead. 
    6739 self.df = self.df.append(df_add, ignore_index=True) 
    6740 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6741 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6742 is deprecated and will be removed from pandas in a future version. Use
    6743 pandas.concat instead. 
    6744 self.df = self.df.append(df_add, ignore_index=True) 
    6745 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    6746 commentary/20210406_EX2_UM3_Steve021_SA_MG3_combined-consensus-all-
    6747 files_1,2.pb 
    6748 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    6749 commentary/20210406_EX2_UM3_Steve021_SA_MG3_combined-consensus-all-
    6750 files_1,2.tsv 
    6751 
    6752 > open "M:/_Steve021/Matrigel/New docking- for
    6753 > commentary/results_jiH_3LUKOOl+/fixed_chain.pdb"
    6754 
    6755 Chain information for fixed_chain.pdb #4 
    6756 --- 
    6757 Chain | Description 
    6758 A | No description available 
    6759 B | No description available 
    6760 C | No description available 
    6761  
    6762 
    6763 > hide #2 models
    6764 
    6765 > show #2 models
    6766 
    6767 > hide #2 models
    6768 
    6769 > open "M:/_Steve021/Matrigel/New docking- for
    6770 > commentary/results_jiH_3LUKOOl+/accessible_interaction_space.mrc"
    6771 
    6772 Opened accessible_interaction_space.mrc as #5, grid size 90,108,96, pixel 2,
    6773 shown at level 7, step 1, values int16 
    6774 
    6775 > volume #5 level 7.978
    6776 
    6777 > volume #5 style mesh
    6778 
    6779 > volume #5 style image
    6780 
    6781 > volume #5 maximumIntensityProjection true
    6782 
    6783 > volume #5 region 0,0,47,89,107,47 step 1 maximumIntensityProjection false
    6784 > showOutlineBox true
    6785 
    6786 > volume #5 region 0,0,0,89,107,95 step 1
    6787 
    6788 > volume #5 region 0,0,0,89,107,95 step 1 colorMode opaque8 orthoplanes xyz
    6789 > positionPlanes 44,53,47 imageMode orthoplanes
    6790 
    6791 > volume #5 imageMode "box faces"
    6792 
    6793 > volume #5 colorMode auto8 imageMode "tilted slab" tiltedSlabAxis
    6794 > -0.6387,-0.7261,-0.2546 tiltedSlabOffset -0.8123 tiltedSlabSpacing 2
    6795 > tiltedSlabPlaneCount 18
    6796 
    6797 > volume #5 style surface
    6798 
    6799 > volume #5 change image level 0,0 level 7,0.8 level 10,1
    6800 
    6801 > volume #5 level 7.985
    6802 
    6803 > volume #5 level 9
    6804 
    6805 > volume #5 level 7.917
    6806 
    6807 > show #2 models
    6808 
    6809 > select #1
    6810 
    6811 3054 atoms, 2946 bonds, 540 residues, 1 model selected 
    6812 
    6813 > ui mousemode right "translate selected models"
    6814 
    6815 > view matrix models
    6816 > #1,-0.33603,-0.55596,0.76025,13.938,-0.46807,-0.60188,-0.64703,20.376,0.81731,-0.57327,-0.057977,62.078
    6817 
    6818 > view matrix models
    6819 > #1,-0.33603,-0.55596,0.76025,-14.482,-0.46807,-0.60188,-0.64703,4.9878,0.81731,-0.57327,-0.057977,40.969
    6820 
    6821 > ui mousemode right select
    6822 
    6823 > select clear
    6824 
    6825 > color bychain
    6826 
    6827 > volume #5 level 7.015
    6828 
    6829 > select #4
    6830 
    6831 10948 atoms, 10738 bonds, 997 residues, 1 model selected 
    6832 
    6833 > ui mousemode right "translate selected models"
    6834 
    6835 > view matrix models #4,1,0,0,-1.8744,0,1,0,0.84612,0,0,1,2.8965
    6836 
    6837 > undo
    6838 
    6839 > select #2
    6840 
    6841 10948 atoms, 10738 bonds, 12 pseudobonds, 997 residues, 2 models selected 
    6842 
    6843 > select #4
    6844 
    6845 10948 atoms, 10738 bonds, 997 residues, 1 model selected 
    6846 
    6847 > select #2
    6848 
    6849 10948 atoms, 10738 bonds, 12 pseudobonds, 997 residues, 2 models selected 
    6850 
    6851 > select #1
    6852 
    6853 3054 atoms, 2946 bonds, 540 residues, 1 model selected 
    6854 
    6855 > view matrix models
    6856 > #1,-0.33603,-0.55596,0.76025,-9.9982,-0.46807,-0.60188,-0.64703,-1.2465,0.81731,-0.57327,-0.057977,35.219
    6857 
    6858 > view matrix models
    6859 > #1,-0.33603,-0.55596,0.76025,-3.9058,-0.46807,-0.60188,-0.64703,-10.419,0.81731,-0.57327,-0.057977,39.059
    6860 
    6861 > volume #5 level 6.992
    6862 
    6863 > hide #3 models
    6864 
    6865 > ui mousemode right select
    6866 
    6867 > select clear
    6868 
    6869 > ui tool show XMAS
    6870 
    6871  
    6872 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    6873 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate3-combined.xlsx 
    6874 Unique peptide pairs: 95 out of 95 
    6875 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6876 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6877 is deprecated and will be removed from pandas in a future version. Use
    6878 pandas.concat instead. 
    6879 self.df = self.df.append(df_add, ignore_index=True) 
    6880 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6881 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6882 is deprecated and will be removed from pandas in a future version. Use
    6883 pandas.concat instead. 
    6884 self.df = self.df.append(df_add, ignore_index=True) 
    6885 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6886 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6887 is deprecated and will be removed from pandas in a future version. Use
    6888 pandas.concat instead. 
    6889 self.df = self.df.append(df_add, ignore_index=True) 
    6890 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6891 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6892 is deprecated and will be removed from pandas in a future version. Use
    6893 pandas.concat instead. 
    6894 self.df = self.df.append(df_add, ignore_index=True) 
    6895 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6896 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6897 is deprecated and will be removed from pandas in a future version. Use
    6898 pandas.concat instead. 
    6899 self.df = self.df.append(df_add, ignore_index=True) 
    6900 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6901 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6902 is deprecated and will be removed from pandas in a future version. Use
    6903 pandas.concat instead. 
    6904 self.df = self.df.append(df_add, ignore_index=True) 
    6905 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6906 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6907 is deprecated and will be removed from pandas in a future version. Use
    6908 pandas.concat instead. 
    6909 self.df = self.df.append(df_add, ignore_index=True) 
    6910 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6911 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6912 is deprecated and will be removed from pandas in a future version. Use
    6913 pandas.concat instead. 
    6914 self.df = self.df.append(df_add, ignore_index=True) 
    6915 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6916 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6917 is deprecated and will be removed from pandas in a future version. Use
    6918 pandas.concat instead. 
    6919 self.df = self.df.append(df_add, ignore_index=True) 
    6920 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6921 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6922 is deprecated and will be removed from pandas in a future version. Use
    6923 pandas.concat instead. 
    6924 self.df = self.df.append(df_add, ignore_index=True) 
    6925 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6926 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6927 is deprecated and will be removed from pandas in a future version. Use
    6928 pandas.concat instead. 
    6929 self.df = self.df.append(df_add, ignore_index=True) 
    6930 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6931 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6932 is deprecated and will be removed from pandas in a future version. Use
    6933 pandas.concat instead. 
    6934 self.df = self.df.append(df_add, ignore_index=True) 
    6935 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6936 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6937 is deprecated and will be removed from pandas in a future version. Use
    6938 pandas.concat instead. 
    6939 self.df = self.df.append(df_add, ignore_index=True) 
    6940 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6941 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6942 is deprecated and will be removed from pandas in a future version. Use
    6943 pandas.concat instead. 
    6944 self.df = self.df.append(df_add, ignore_index=True) 
    6945 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6946 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6947 is deprecated and will be removed from pandas in a future version. Use
    6948 pandas.concat instead. 
    6949 self.df = self.df.append(df_add, ignore_index=True) 
    6950 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6951 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6952 is deprecated and will be removed from pandas in a future version. Use
    6953 pandas.concat instead. 
    6954 self.df = self.df.append(df_add, ignore_index=True) 
    6955 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6956 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6957 is deprecated and will be removed from pandas in a future version. Use
    6958 pandas.concat instead. 
    6959 self.df = self.df.append(df_add, ignore_index=True) 
    6960 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6961 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6962 is deprecated and will be removed from pandas in a future version. Use
    6963 pandas.concat instead. 
    6964 self.df = self.df.append(df_add, ignore_index=True) 
    6965 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6966 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6967 is deprecated and will be removed from pandas in a future version. Use
    6968 pandas.concat instead. 
    6969 self.df = self.df.append(df_add, ignore_index=True) 
    6970 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6971 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6972 is deprecated and will be removed from pandas in a future version. Use
    6973 pandas.concat instead. 
    6974 self.df = self.df.append(df_add, ignore_index=True) 
    6975 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6976 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6977 is deprecated and will be removed from pandas in a future version. Use
    6978 pandas.concat instead. 
    6979 self.df = self.df.append(df_add, ignore_index=True) 
    6980 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6981 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6982 is deprecated and will be removed from pandas in a future version. Use
    6983 pandas.concat instead. 
    6984 self.df = self.df.append(df_add, ignore_index=True) 
    6985 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6986 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6987 is deprecated and will be removed from pandas in a future version. Use
    6988 pandas.concat instead. 
    6989 self.df = self.df.append(df_add, ignore_index=True) 
    6990 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6991 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6992 is deprecated and will be removed from pandas in a future version. Use
    6993 pandas.concat instead. 
    6994 self.df = self.df.append(df_add, ignore_index=True) 
    6995 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    6996 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    6997 is deprecated and will be removed from pandas in a future version. Use
    6998 pandas.concat instead. 
    6999 self.df = self.df.append(df_add, ignore_index=True) 
    7000 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7001 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7002 is deprecated and will be removed from pandas in a future version. Use
    7003 pandas.concat instead. 
    7004 self.df = self.df.append(df_add, ignore_index=True) 
    7005 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7006 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7007 is deprecated and will be removed from pandas in a future version. Use
    7008 pandas.concat instead. 
    7009 self.df = self.df.append(df_add, ignore_index=True) 
    7010 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7011 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7012 is deprecated and will be removed from pandas in a future version. Use
    7013 pandas.concat instead. 
    7014 self.df = self.df.append(df_add, ignore_index=True) 
    7015 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7016 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7017 is deprecated and will be removed from pandas in a future version. Use
    7018 pandas.concat instead. 
    7019 self.df = self.df.append(df_add, ignore_index=True) 
    7020 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7021 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7022 is deprecated and will be removed from pandas in a future version. Use
    7023 pandas.concat instead. 
    7024 self.df = self.df.append(df_add, ignore_index=True) 
    7025 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7026 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7027 is deprecated and will be removed from pandas in a future version. Use
    7028 pandas.concat instead. 
    7029 self.df = self.df.append(df_add, ignore_index=True) 
    7030 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7031 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7032 is deprecated and will be removed from pandas in a future version. Use
    7033 pandas.concat instead. 
    7034 self.df = self.df.append(df_add, ignore_index=True) 
    7035 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7036 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7037 is deprecated and will be removed from pandas in a future version. Use
    7038 pandas.concat instead. 
    7039 self.df = self.df.append(df_add, ignore_index=True) 
    7040 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7041 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7042 is deprecated and will be removed from pandas in a future version. Use
    7043 pandas.concat instead. 
    7044 self.df = self.df.append(df_add, ignore_index=True) 
    7045 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7046 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7047 is deprecated and will be removed from pandas in a future version. Use
    7048 pandas.concat instead. 
    7049 self.df = self.df.append(df_add, ignore_index=True) 
    7050 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7051 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7052 is deprecated and will be removed from pandas in a future version. Use
    7053 pandas.concat instead. 
    7054 self.df = self.df.append(df_add, ignore_index=True) 
    7055 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7056 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7057 is deprecated and will be removed from pandas in a future version. Use
    7058 pandas.concat instead. 
    7059 self.df = self.df.append(df_add, ignore_index=True) 
    7060 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7061 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7062 is deprecated and will be removed from pandas in a future version. Use
    7063 pandas.concat instead. 
    7064 self.df = self.df.append(df_add, ignore_index=True) 
    7065 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7066 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7067 is deprecated and will be removed from pandas in a future version. Use
    7068 pandas.concat instead. 
    7069 self.df = self.df.append(df_add, ignore_index=True) 
    7070 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7071 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7072 is deprecated and will be removed from pandas in a future version. Use
    7073 pandas.concat instead. 
    7074 self.df = self.df.append(df_add, ignore_index=True) 
    7075 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7076 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7077 is deprecated and will be removed from pandas in a future version. Use
    7078 pandas.concat instead. 
    7079 self.df = self.df.append(df_add, ignore_index=True) 
    7080 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7081 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7082 is deprecated and will be removed from pandas in a future version. Use
    7083 pandas.concat instead. 
    7084 self.df = self.df.append(df_add, ignore_index=True) 
    7085 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7086 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7087 is deprecated and will be removed from pandas in a future version. Use
    7088 pandas.concat instead. 
    7089 self.df = self.df.append(df_add, ignore_index=True) 
    7090 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7091 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7092 is deprecated and will be removed from pandas in a future version. Use
    7093 pandas.concat instead. 
    7094 self.df = self.df.append(df_add, ignore_index=True) 
    7095 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7096 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7097 is deprecated and will be removed from pandas in a future version. Use
    7098 pandas.concat instead. 
    7099 self.df = self.df.append(df_add, ignore_index=True) 
    7100 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7101 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7102 is deprecated and will be removed from pandas in a future version. Use
    7103 pandas.concat instead. 
    7104 self.df = self.df.append(df_add, ignore_index=True) 
    7105 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7106 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7107 is deprecated and will be removed from pandas in a future version. Use
    7108 pandas.concat instead. 
    7109 self.df = self.df.append(df_add, ignore_index=True) 
    7110 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7111 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7112 is deprecated and will be removed from pandas in a future version. Use
    7113 pandas.concat instead. 
    7114 self.df = self.df.append(df_add, ignore_index=True) 
    7115 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7116 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7117 is deprecated and will be removed from pandas in a future version. Use
    7118 pandas.concat instead. 
    7119 self.df = self.df.append(df_add, ignore_index=True) 
    7120 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7121 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7122 is deprecated and will be removed from pandas in a future version. Use
    7123 pandas.concat instead. 
    7124 self.df = self.df.append(df_add, ignore_index=True) 
    7125 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7126 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7127 is deprecated and will be removed from pandas in a future version. Use
    7128 pandas.concat instead. 
    7129 self.df = self.df.append(df_add, ignore_index=True) 
    7130 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7131 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7132 is deprecated and will be removed from pandas in a future version. Use
    7133 pandas.concat instead. 
    7134 self.df = self.df.append(df_add, ignore_index=True) 
    7135 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7136 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7137 is deprecated and will be removed from pandas in a future version. Use
    7138 pandas.concat instead. 
    7139 self.df = self.df.append(df_add, ignore_index=True) 
    7140 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7141 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7142 is deprecated and will be removed from pandas in a future version. Use
    7143 pandas.concat instead. 
    7144 self.df = self.df.append(df_add, ignore_index=True) 
    7145 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7146 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7147 is deprecated and will be removed from pandas in a future version. Use
    7148 pandas.concat instead. 
    7149 self.df = self.df.append(df_add, ignore_index=True) 
    7150 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7151 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7152 is deprecated and will be removed from pandas in a future version. Use
    7153 pandas.concat instead. 
    7154 self.df = self.df.append(df_add, ignore_index=True) 
    7155 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7156 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7157 is deprecated and will be removed from pandas in a future version. Use
    7158 pandas.concat instead. 
    7159 self.df = self.df.append(df_add, ignore_index=True) 
    7160 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7161 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7162 is deprecated and will be removed from pandas in a future version. Use
    7163 pandas.concat instead. 
    7164 self.df = self.df.append(df_add, ignore_index=True) 
    7165 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7166 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7167 is deprecated and will be removed from pandas in a future version. Use
    7168 pandas.concat instead. 
    7169 self.df = self.df.append(df_add, ignore_index=True) 
    7170 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7171 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7172 is deprecated and will be removed from pandas in a future version. Use
    7173 pandas.concat instead. 
    7174 self.df = self.df.append(df_add, ignore_index=True) 
    7175 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7176 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7177 is deprecated and will be removed from pandas in a future version. Use
    7178 pandas.concat instead. 
    7179 self.df = self.df.append(df_add, ignore_index=True) 
    7180 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7181 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7182 is deprecated and will be removed from pandas in a future version. Use
    7183 pandas.concat instead. 
    7184 self.df = self.df.append(df_add, ignore_index=True) 
    7185 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7186 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7187 is deprecated and will be removed from pandas in a future version. Use
    7188 pandas.concat instead. 
    7189 self.df = self.df.append(df_add, ignore_index=True) 
    7190 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7191 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7192 is deprecated and will be removed from pandas in a future version. Use
    7193 pandas.concat instead. 
    7194 self.df = self.df.append(df_add, ignore_index=True) 
    7195 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7196 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7197 is deprecated and will be removed from pandas in a future version. Use
    7198 pandas.concat instead. 
    7199 self.df = self.df.append(df_add, ignore_index=True) 
    7200 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7201 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7202 is deprecated and will be removed from pandas in a future version. Use
    7203 pandas.concat instead. 
    7204 self.df = self.df.append(df_add, ignore_index=True) 
    7205 Unique peptide pairs with pseudobonds: 29 
    7206 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7207 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7208 is deprecated and will be removed from pandas in a future version. Use
    7209 pandas.concat instead. 
    7210 self.df = self.df.append(df_add, ignore_index=True) 
    7211 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7212 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7213 is deprecated and will be removed from pandas in a future version. Use
    7214 pandas.concat instead. 
    7215 self.df = self.df.append(df_add, ignore_index=True) 
    7216 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7217 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7218 is deprecated and will be removed from pandas in a future version. Use
    7219 pandas.concat instead. 
    7220 self.df = self.df.append(df_add, ignore_index=True) 
    7221 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7222 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7223 is deprecated and will be removed from pandas in a future version. Use
    7224 pandas.concat instead. 
    7225 self.df = self.df.append(df_add, ignore_index=True) 
    7226 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7227 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7228 is deprecated and will be removed from pandas in a future version. Use
    7229 pandas.concat instead. 
    7230 self.df = self.df.append(df_add, ignore_index=True) 
    7231 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7232 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7233 is deprecated and will be removed from pandas in a future version. Use
    7234 pandas.concat instead. 
    7235 self.df = self.df.append(df_add, ignore_index=True) 
    7236 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7237 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7238 is deprecated and will be removed from pandas in a future version. Use
    7239 pandas.concat instead. 
    7240 self.df = self.df.append(df_add, ignore_index=True) 
    7241 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7242 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7243 is deprecated and will be removed from pandas in a future version. Use
    7244 pandas.concat instead. 
    7245 self.df = self.df.append(df_add, ignore_index=True) 
    7246 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7247 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7248 is deprecated and will be removed from pandas in a future version. Use
    7249 pandas.concat instead. 
    7250 self.df = self.df.append(df_add, ignore_index=True) 
    7251 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7252 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7253 is deprecated and will be removed from pandas in a future version. Use
    7254 pandas.concat instead. 
    7255 self.df = self.df.append(df_add, ignore_index=True) 
    7256 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7257 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7258 is deprecated and will be removed from pandas in a future version. Use
    7259 pandas.concat instead. 
    7260 self.df = self.df.append(df_add, ignore_index=True) 
    7261 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7262 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7263 is deprecated and will be removed from pandas in a future version. Use
    7264 pandas.concat instead. 
    7265 self.df = self.df.append(df_add, ignore_index=True) 
    7266 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7267 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7268 is deprecated and will be removed from pandas in a future version. Use
    7269 pandas.concat instead. 
    7270 self.df = self.df.append(df_add, ignore_index=True) 
    7271 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7272 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7273 is deprecated and will be removed from pandas in a future version. Use
    7274 pandas.concat instead. 
    7275 self.df = self.df.append(df_add, ignore_index=True) 
    7276 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7277 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7278 is deprecated and will be removed from pandas in a future version. Use
    7279 pandas.concat instead. 
    7280 self.df = self.df.append(df_add, ignore_index=True) 
    7281 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7282 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7283 is deprecated and will be removed from pandas in a future version. Use
    7284 pandas.concat instead. 
    7285 self.df = self.df.append(df_add, ignore_index=True) 
    7286 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7287 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7288 is deprecated and will be removed from pandas in a future version. Use
    7289 pandas.concat instead. 
    7290 self.df = self.df.append(df_add, ignore_index=True) 
    7291 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7292 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7293 is deprecated and will be removed from pandas in a future version. Use
    7294 pandas.concat instead. 
    7295 self.df = self.df.append(df_add, ignore_index=True) 
    7296 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7297 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7298 is deprecated and will be removed from pandas in a future version. Use
    7299 pandas.concat instead. 
    7300 self.df = self.df.append(df_add, ignore_index=True) 
    7301 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7302 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7303 is deprecated and will be removed from pandas in a future version. Use
    7304 pandas.concat instead. 
    7305 self.df = self.df.append(df_add, ignore_index=True) 
    7306 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7307 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7308 is deprecated and will be removed from pandas in a future version. Use
    7309 pandas.concat instead. 
    7310 self.df = self.df.append(df_add, ignore_index=True) 
    7311 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7312 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7313 is deprecated and will be removed from pandas in a future version. Use
    7314 pandas.concat instead. 
    7315 self.df = self.df.append(df_add, ignore_index=True) 
    7316 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7317 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7318 is deprecated and will be removed from pandas in a future version. Use
    7319 pandas.concat instead. 
    7320 self.df = self.df.append(df_add, ignore_index=True) 
    7321 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7322 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7323 is deprecated and will be removed from pandas in a future version. Use
    7324 pandas.concat instead. 
    7325 self.df = self.df.append(df_add, ignore_index=True) 
    7326 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7327 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7328 is deprecated and will be removed from pandas in a future version. Use
    7329 pandas.concat instead. 
    7330 self.df = self.df.append(df_add, ignore_index=True) 
    7331 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7332 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7333 is deprecated and will be removed from pandas in a future version. Use
    7334 pandas.concat instead. 
    7335 self.df = self.df.append(df_add, ignore_index=True) 
    7336 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7337 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7338 is deprecated and will be removed from pandas in a future version. Use
    7339 pandas.concat instead. 
    7340 self.df = self.df.append(df_add, ignore_index=True) 
    7341 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7342 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7343 is deprecated and will be removed from pandas in a future version. Use
    7344 pandas.concat instead. 
    7345 self.df = self.df.append(df_add, ignore_index=True) 
    7346 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7347 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7348 is deprecated and will be removed from pandas in a future version. Use
    7349 pandas.concat instead. 
    7350 self.df = self.df.append(df_add, ignore_index=True) 
    7351 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7352 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7353 is deprecated and will be removed from pandas in a future version. Use
    7354 pandas.concat instead. 
    7355 self.df = self.df.append(df_add, ignore_index=True) 
    7356 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7357 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7358 is deprecated and will be removed from pandas in a future version. Use
    7359 pandas.concat instead. 
    7360 self.df = self.df.append(df_add, ignore_index=True) 
    7361 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7362 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7363 is deprecated and will be removed from pandas in a future version. Use
    7364 pandas.concat instead. 
    7365 self.df = self.df.append(df_add, ignore_index=True) 
    7366 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7367 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7368 is deprecated and will be removed from pandas in a future version. Use
    7369 pandas.concat instead. 
    7370 self.df = self.df.append(df_add, ignore_index=True) 
    7371 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7372 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7373 is deprecated and will be removed from pandas in a future version. Use
    7374 pandas.concat instead. 
    7375 self.df = self.df.append(df_add, ignore_index=True) 
    7376 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7377 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7378 is deprecated and will be removed from pandas in a future version. Use
    7379 pandas.concat instead. 
    7380 self.df = self.df.append(df_add, ignore_index=True) 
    7381 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7382 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7383 is deprecated and will be removed from pandas in a future version. Use
    7384 pandas.concat instead. 
    7385 self.df = self.df.append(df_add, ignore_index=True) 
    7386 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7387 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7388 is deprecated and will be removed from pandas in a future version. Use
    7389 pandas.concat instead. 
    7390 self.df = self.df.append(df_add, ignore_index=True) 
    7391 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7392 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7393 is deprecated and will be removed from pandas in a future version. Use
    7394 pandas.concat instead. 
    7395 self.df = self.df.append(df_add, ignore_index=True) 
    7396 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7397 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7398 is deprecated and will be removed from pandas in a future version. Use
    7399 pandas.concat instead. 
    7400 self.df = self.df.append(df_add, ignore_index=True) 
    7401 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7402 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7403 is deprecated and will be removed from pandas in a future version. Use
    7404 pandas.concat instead. 
    7405 self.df = self.df.append(df_add, ignore_index=True) 
    7406 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7407 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7408 is deprecated and will be removed from pandas in a future version. Use
    7409 pandas.concat instead. 
    7410 self.df = self.df.append(df_add, ignore_index=True) 
    7411 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7412 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7413 is deprecated and will be removed from pandas in a future version. Use
    7414 pandas.concat instead. 
    7415 self.df = self.df.append(df_add, ignore_index=True) 
    7416 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7417 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7418 is deprecated and will be removed from pandas in a future version. Use
    7419 pandas.concat instead. 
    7420 self.df = self.df.append(df_add, ignore_index=True) 
    7421 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7422 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7423 is deprecated and will be removed from pandas in a future version. Use
    7424 pandas.concat instead. 
    7425 self.df = self.df.append(df_add, ignore_index=True) 
    7426 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7427 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7428 is deprecated and will be removed from pandas in a future version. Use
    7429 pandas.concat instead. 
    7430 self.df = self.df.append(df_add, ignore_index=True) 
    7431 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7432 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7433 is deprecated and will be removed from pandas in a future version. Use
    7434 pandas.concat instead. 
    7435 self.df = self.df.append(df_add, ignore_index=True) 
    7436 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7437 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7438 is deprecated and will be removed from pandas in a future version. Use
    7439 pandas.concat instead. 
    7440 self.df = self.df.append(df_add, ignore_index=True) 
    7441 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7442 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7443 is deprecated and will be removed from pandas in a future version. Use
    7444 pandas.concat instead. 
    7445 self.df = self.df.append(df_add, ignore_index=True) 
    7446 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7447 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7448 is deprecated and will be removed from pandas in a future version. Use
    7449 pandas.concat instead. 
    7450 self.df = self.df.append(df_add, ignore_index=True) 
    7451 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7452 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7453 is deprecated and will be removed from pandas in a future version. Use
    7454 pandas.concat instead. 
    7455 self.df = self.df.append(df_add, ignore_index=True) 
    7456 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7457 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7458 is deprecated and will be removed from pandas in a future version. Use
    7459 pandas.concat instead. 
    7460 self.df = self.df.append(df_add, ignore_index=True) 
    7461 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7462 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7463 is deprecated and will be removed from pandas in a future version. Use
    7464 pandas.concat instead. 
    7465 self.df = self.df.append(df_add, ignore_index=True) 
    7466 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7467 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7468 is deprecated and will be removed from pandas in a future version. Use
    7469 pandas.concat instead. 
    7470 self.df = self.df.append(df_add, ignore_index=True) 
    7471 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7472 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7473 is deprecated and will be removed from pandas in a future version. Use
    7474 pandas.concat instead. 
    7475 self.df = self.df.append(df_add, ignore_index=True) 
    7476 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7477 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7478 is deprecated and will be removed from pandas in a future version. Use
    7479 pandas.concat instead. 
    7480 self.df = self.df.append(df_add, ignore_index=True) 
    7481 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7482 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7483 is deprecated and will be removed from pandas in a future version. Use
    7484 pandas.concat instead. 
    7485 self.df = self.df.append(df_add, ignore_index=True) 
    7486 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7487 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7488 is deprecated and will be removed from pandas in a future version. Use
    7489 pandas.concat instead. 
    7490 self.df = self.df.append(df_add, ignore_index=True) 
    7491 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7492 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7493 is deprecated and will be removed from pandas in a future version. Use
    7494 pandas.concat instead. 
    7495 self.df = self.df.append(df_add, ignore_index=True) 
    7496 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7497 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7498 is deprecated and will be removed from pandas in a future version. Use
    7499 pandas.concat instead. 
    7500 self.df = self.df.append(df_add, ignore_index=True) 
    7501 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7502 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7503 is deprecated and will be removed from pandas in a future version. Use
    7504 pandas.concat instead. 
    7505 self.df = self.df.append(df_add, ignore_index=True) 
    7506 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7507 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7508 is deprecated and will be removed from pandas in a future version. Use
    7509 pandas.concat instead. 
    7510 self.df = self.df.append(df_add, ignore_index=True) 
    7511 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7512 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7513 is deprecated and will be removed from pandas in a future version. Use
    7514 pandas.concat instead. 
    7515 self.df = self.df.append(df_add, ignore_index=True) 
    7516 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7517 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7518 is deprecated and will be removed from pandas in a future version. Use
    7519 pandas.concat instead. 
    7520 self.df = self.df.append(df_add, ignore_index=True) 
    7521 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7522 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7523 is deprecated and will be removed from pandas in a future version. Use
    7524 pandas.concat instead. 
    7525 self.df = self.df.append(df_add, ignore_index=True) 
    7526 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7527 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7528 is deprecated and will be removed from pandas in a future version. Use
    7529 pandas.concat instead. 
    7530 self.df = self.df.append(df_add, ignore_index=True) 
    7531 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7532 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7533 is deprecated and will be removed from pandas in a future version. Use
    7534 pandas.concat instead. 
    7535 self.df = self.df.append(df_add, ignore_index=True) 
    7536 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7537 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7538 is deprecated and will be removed from pandas in a future version. Use
    7539 pandas.concat instead. 
    7540 self.df = self.df.append(df_add, ignore_index=True) 
    7541 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7542 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7543 is deprecated and will be removed from pandas in a future version. Use
    7544 pandas.concat instead. 
    7545 self.df = self.df.append(df_add, ignore_index=True) 
    7546 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7547 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7548 is deprecated and will be removed from pandas in a future version. Use
    7549 pandas.concat instead. 
    7550 self.df = self.df.append(df_add, ignore_index=True) 
    7551 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7552 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7553 is deprecated and will be removed from pandas in a future version. Use
    7554 pandas.concat instead. 
    7555 self.df = self.df.append(df_add, ignore_index=True) 
    7556 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7557 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7558 is deprecated and will be removed from pandas in a future version. Use
    7559 pandas.concat instead. 
    7560 self.df = self.df.append(df_add, ignore_index=True) 
    7561 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7562 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7563 is deprecated and will be removed from pandas in a future version. Use
    7564 pandas.concat instead. 
    7565 self.df = self.df.append(df_add, ignore_index=True) 
    7566 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7567 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7568 is deprecated and will be removed from pandas in a future version. Use
    7569 pandas.concat instead. 
    7570 self.df = self.df.append(df_add, ignore_index=True) 
    7571 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7572 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7573 is deprecated and will be removed from pandas in a future version. Use
    7574 pandas.concat instead. 
    7575 self.df = self.df.append(df_add, ignore_index=True) 
    7576 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7577 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7578 is deprecated and will be removed from pandas in a future version. Use
    7579 pandas.concat instead. 
    7580 self.df = self.df.append(df_add, ignore_index=True) 
    7581 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7582 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7583 is deprecated and will be removed from pandas in a future version. Use
    7584 pandas.concat instead. 
    7585 self.df = self.df.append(df_add, ignore_index=True) 
    7586 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    7587 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate3-combined_1,2,4.pb 
    7588 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    7589 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate3-combined_1,2,4.tsv 
    7590  
    7591 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    7592 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate1-combined.xlsx 
    7593 Unique peptide pairs: 117 out of 117 
    7594 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7595 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7596 is deprecated and will be removed from pandas in a future version. Use
    7597 pandas.concat instead. 
    7598 self.df = self.df.append(df_add, ignore_index=True) 
    7599 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7600 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7601 is deprecated and will be removed from pandas in a future version. Use
    7602 pandas.concat instead. 
    7603 self.df = self.df.append(df_add, ignore_index=True) 
    7604 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7605 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7606 is deprecated and will be removed from pandas in a future version. Use
    7607 pandas.concat instead. 
    7608 self.df = self.df.append(df_add, ignore_index=True) 
    7609 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7610 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7611 is deprecated and will be removed from pandas in a future version. Use
    7612 pandas.concat instead. 
    7613 self.df = self.df.append(df_add, ignore_index=True) 
    7614 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7615 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7616 is deprecated and will be removed from pandas in a future version. Use
    7617 pandas.concat instead. 
    7618 self.df = self.df.append(df_add, ignore_index=True) 
    7619 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7620 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7621 is deprecated and will be removed from pandas in a future version. Use
    7622 pandas.concat instead. 
    7623 self.df = self.df.append(df_add, ignore_index=True) 
    7624 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7625 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7626 is deprecated and will be removed from pandas in a future version. Use
    7627 pandas.concat instead. 
    7628 self.df = self.df.append(df_add, ignore_index=True) 
    7629 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7630 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7631 is deprecated and will be removed from pandas in a future version. Use
    7632 pandas.concat instead. 
    7633 self.df = self.df.append(df_add, ignore_index=True) 
    7634 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7635 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7636 is deprecated and will be removed from pandas in a future version. Use
    7637 pandas.concat instead. 
    7638 self.df = self.df.append(df_add, ignore_index=True) 
    7639 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7640 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7641 is deprecated and will be removed from pandas in a future version. Use
    7642 pandas.concat instead. 
    7643 self.df = self.df.append(df_add, ignore_index=True) 
    7644 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7645 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7646 is deprecated and will be removed from pandas in a future version. Use
    7647 pandas.concat instead. 
    7648 self.df = self.df.append(df_add, ignore_index=True) 
    7649 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7650 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7651 is deprecated and will be removed from pandas in a future version. Use
    7652 pandas.concat instead. 
    7653 self.df = self.df.append(df_add, ignore_index=True) 
    7654 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7655 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7656 is deprecated and will be removed from pandas in a future version. Use
    7657 pandas.concat instead. 
    7658 self.df = self.df.append(df_add, ignore_index=True) 
    7659 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7660 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7661 is deprecated and will be removed from pandas in a future version. Use
    7662 pandas.concat instead. 
    7663 self.df = self.df.append(df_add, ignore_index=True) 
    7664 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7665 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7666 is deprecated and will be removed from pandas in a future version. Use
    7667 pandas.concat instead. 
    7668 self.df = self.df.append(df_add, ignore_index=True) 
    7669 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7670 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7671 is deprecated and will be removed from pandas in a future version. Use
    7672 pandas.concat instead. 
    7673 self.df = self.df.append(df_add, ignore_index=True) 
    7674 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7675 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7676 is deprecated and will be removed from pandas in a future version. Use
    7677 pandas.concat instead. 
    7678 self.df = self.df.append(df_add, ignore_index=True) 
    7679 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7680 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7681 is deprecated and will be removed from pandas in a future version. Use
    7682 pandas.concat instead. 
    7683 self.df = self.df.append(df_add, ignore_index=True) 
    7684 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7685 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7686 is deprecated and will be removed from pandas in a future version. Use
    7687 pandas.concat instead. 
    7688 self.df = self.df.append(df_add, ignore_index=True) 
    7689 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7690 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7691 is deprecated and will be removed from pandas in a future version. Use
    7692 pandas.concat instead. 
    7693 self.df = self.df.append(df_add, ignore_index=True) 
    7694 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7695 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7696 is deprecated and will be removed from pandas in a future version. Use
    7697 pandas.concat instead. 
    7698 self.df = self.df.append(df_add, ignore_index=True) 
    7699 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7700 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7701 is deprecated and will be removed from pandas in a future version. Use
    7702 pandas.concat instead. 
    7703 self.df = self.df.append(df_add, ignore_index=True) 
    7704 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7705 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7706 is deprecated and will be removed from pandas in a future version. Use
    7707 pandas.concat instead. 
    7708 self.df = self.df.append(df_add, ignore_index=True) 
    7709 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7710 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7711 is deprecated and will be removed from pandas in a future version. Use
    7712 pandas.concat instead. 
    7713 self.df = self.df.append(df_add, ignore_index=True) 
    7714 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7715 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7716 is deprecated and will be removed from pandas in a future version. Use
    7717 pandas.concat instead. 
    7718 self.df = self.df.append(df_add, ignore_index=True) 
    7719 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7720 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7721 is deprecated and will be removed from pandas in a future version. Use
    7722 pandas.concat instead. 
    7723 self.df = self.df.append(df_add, ignore_index=True) 
    7724 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7725 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7726 is deprecated and will be removed from pandas in a future version. Use
    7727 pandas.concat instead. 
    7728 self.df = self.df.append(df_add, ignore_index=True) 
    7729 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7730 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7731 is deprecated and will be removed from pandas in a future version. Use
    7732 pandas.concat instead. 
    7733 self.df = self.df.append(df_add, ignore_index=True) 
    7734 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7735 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7736 is deprecated and will be removed from pandas in a future version. Use
    7737 pandas.concat instead. 
    7738 self.df = self.df.append(df_add, ignore_index=True) 
    7739 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7740 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7741 is deprecated and will be removed from pandas in a future version. Use
    7742 pandas.concat instead. 
    7743 self.df = self.df.append(df_add, ignore_index=True) 
    7744 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7745 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7746 is deprecated and will be removed from pandas in a future version. Use
    7747 pandas.concat instead. 
    7748 self.df = self.df.append(df_add, ignore_index=True) 
    7749 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7750 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7751 is deprecated and will be removed from pandas in a future version. Use
    7752 pandas.concat instead. 
    7753 self.df = self.df.append(df_add, ignore_index=True) 
    7754 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7755 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7756 is deprecated and will be removed from pandas in a future version. Use
    7757 pandas.concat instead. 
    7758 self.df = self.df.append(df_add, ignore_index=True) 
    7759 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7760 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7761 is deprecated and will be removed from pandas in a future version. Use
    7762 pandas.concat instead. 
    7763 self.df = self.df.append(df_add, ignore_index=True) 
    7764 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7765 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7766 is deprecated and will be removed from pandas in a future version. Use
    7767 pandas.concat instead. 
    7768 self.df = self.df.append(df_add, ignore_index=True) 
    7769 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7770 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7771 is deprecated and will be removed from pandas in a future version. Use
    7772 pandas.concat instead. 
    7773 self.df = self.df.append(df_add, ignore_index=True) 
    7774 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7775 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7776 is deprecated and will be removed from pandas in a future version. Use
    7777 pandas.concat instead. 
    7778 self.df = self.df.append(df_add, ignore_index=True) 
    7779 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7780 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7781 is deprecated and will be removed from pandas in a future version. Use
    7782 pandas.concat instead. 
    7783 self.df = self.df.append(df_add, ignore_index=True) 
    7784 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7785 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7786 is deprecated and will be removed from pandas in a future version. Use
    7787 pandas.concat instead. 
    7788 self.df = self.df.append(df_add, ignore_index=True) 
    7789 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7790 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7791 is deprecated and will be removed from pandas in a future version. Use
    7792 pandas.concat instead. 
    7793 self.df = self.df.append(df_add, ignore_index=True) 
    7794 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7795 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7796 is deprecated and will be removed from pandas in a future version. Use
    7797 pandas.concat instead. 
    7798 self.df = self.df.append(df_add, ignore_index=True) 
    7799 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7800 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7801 is deprecated and will be removed from pandas in a future version. Use
    7802 pandas.concat instead. 
    7803 self.df = self.df.append(df_add, ignore_index=True) 
    7804 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7805 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7806 is deprecated and will be removed from pandas in a future version. Use
    7807 pandas.concat instead. 
    7808 self.df = self.df.append(df_add, ignore_index=True) 
    7809 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7810 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7811 is deprecated and will be removed from pandas in a future version. Use
    7812 pandas.concat instead. 
    7813 self.df = self.df.append(df_add, ignore_index=True) 
    7814 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7815 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7816 is deprecated and will be removed from pandas in a future version. Use
    7817 pandas.concat instead. 
    7818 self.df = self.df.append(df_add, ignore_index=True) 
    7819 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7820 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7821 is deprecated and will be removed from pandas in a future version. Use
    7822 pandas.concat instead. 
    7823 self.df = self.df.append(df_add, ignore_index=True) 
    7824 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7825 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7826 is deprecated and will be removed from pandas in a future version. Use
    7827 pandas.concat instead. 
    7828 self.df = self.df.append(df_add, ignore_index=True) 
    7829 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7830 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7831 is deprecated and will be removed from pandas in a future version. Use
    7832 pandas.concat instead. 
    7833 self.df = self.df.append(df_add, ignore_index=True) 
    7834 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7835 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7836 is deprecated and will be removed from pandas in a future version. Use
    7837 pandas.concat instead. 
    7838 self.df = self.df.append(df_add, ignore_index=True) 
    7839 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7840 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7841 is deprecated and will be removed from pandas in a future version. Use
    7842 pandas.concat instead. 
    7843 self.df = self.df.append(df_add, ignore_index=True) 
    7844 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7845 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7846 is deprecated and will be removed from pandas in a future version. Use
    7847 pandas.concat instead. 
    7848 self.df = self.df.append(df_add, ignore_index=True) 
    7849 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7850 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7851 is deprecated and will be removed from pandas in a future version. Use
    7852 pandas.concat instead. 
    7853 self.df = self.df.append(df_add, ignore_index=True) 
    7854 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7855 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7856 is deprecated and will be removed from pandas in a future version. Use
    7857 pandas.concat instead. 
    7858 self.df = self.df.append(df_add, ignore_index=True) 
    7859 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7860 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7861 is deprecated and will be removed from pandas in a future version. Use
    7862 pandas.concat instead. 
    7863 self.df = self.df.append(df_add, ignore_index=True) 
    7864 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7865 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7866 is deprecated and will be removed from pandas in a future version. Use
    7867 pandas.concat instead. 
    7868 self.df = self.df.append(df_add, ignore_index=True) 
    7869 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7870 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7871 is deprecated and will be removed from pandas in a future version. Use
    7872 pandas.concat instead. 
    7873 self.df = self.df.append(df_add, ignore_index=True) 
    7874 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7875 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7876 is deprecated and will be removed from pandas in a future version. Use
    7877 pandas.concat instead. 
    7878 self.df = self.df.append(df_add, ignore_index=True) 
    7879 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7880 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7881 is deprecated and will be removed from pandas in a future version. Use
    7882 pandas.concat instead. 
    7883 self.df = self.df.append(df_add, ignore_index=True) 
    7884 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7885 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7886 is deprecated and will be removed from pandas in a future version. Use
    7887 pandas.concat instead. 
    7888 self.df = self.df.append(df_add, ignore_index=True) 
    7889 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7890 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7891 is deprecated and will be removed from pandas in a future version. Use
    7892 pandas.concat instead. 
    7893 self.df = self.df.append(df_add, ignore_index=True) 
    7894 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7895 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7896 is deprecated and will be removed from pandas in a future version. Use
    7897 pandas.concat instead. 
    7898 self.df = self.df.append(df_add, ignore_index=True) 
    7899 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7900 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7901 is deprecated and will be removed from pandas in a future version. Use
    7902 pandas.concat instead. 
    7903 self.df = self.df.append(df_add, ignore_index=True) 
    7904 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7905 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7906 is deprecated and will be removed from pandas in a future version. Use
    7907 pandas.concat instead. 
    7908 self.df = self.df.append(df_add, ignore_index=True) 
    7909 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7910 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7911 is deprecated and will be removed from pandas in a future version. Use
    7912 pandas.concat instead. 
    7913 self.df = self.df.append(df_add, ignore_index=True) 
    7914 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7915 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7916 is deprecated and will be removed from pandas in a future version. Use
    7917 pandas.concat instead. 
    7918 self.df = self.df.append(df_add, ignore_index=True) 
    7919 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7920 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7921 is deprecated and will be removed from pandas in a future version. Use
    7922 pandas.concat instead. 
    7923 self.df = self.df.append(df_add, ignore_index=True) 
    7924 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7925 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7926 is deprecated and will be removed from pandas in a future version. Use
    7927 pandas.concat instead. 
    7928 self.df = self.df.append(df_add, ignore_index=True) 
    7929 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7930 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7931 is deprecated and will be removed from pandas in a future version. Use
    7932 pandas.concat instead. 
    7933 self.df = self.df.append(df_add, ignore_index=True) 
    7934 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7935 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7936 is deprecated and will be removed from pandas in a future version. Use
    7937 pandas.concat instead. 
    7938 self.df = self.df.append(df_add, ignore_index=True) 
    7939 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7940 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7941 is deprecated and will be removed from pandas in a future version. Use
    7942 pandas.concat instead. 
    7943 self.df = self.df.append(df_add, ignore_index=True) 
    7944 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7945 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7946 is deprecated and will be removed from pandas in a future version. Use
    7947 pandas.concat instead. 
    7948 self.df = self.df.append(df_add, ignore_index=True) 
    7949 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7950 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7951 is deprecated and will be removed from pandas in a future version. Use
    7952 pandas.concat instead. 
    7953 self.df = self.df.append(df_add, ignore_index=True) 
    7954 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7955 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7956 is deprecated and will be removed from pandas in a future version. Use
    7957 pandas.concat instead. 
    7958 self.df = self.df.append(df_add, ignore_index=True) 
    7959 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7960 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7961 is deprecated and will be removed from pandas in a future version. Use
    7962 pandas.concat instead. 
    7963 self.df = self.df.append(df_add, ignore_index=True) 
    7964 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7965 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7966 is deprecated and will be removed from pandas in a future version. Use
    7967 pandas.concat instead. 
    7968 self.df = self.df.append(df_add, ignore_index=True) 
    7969 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7970 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7971 is deprecated and will be removed from pandas in a future version. Use
    7972 pandas.concat instead. 
    7973 self.df = self.df.append(df_add, ignore_index=True) 
    7974 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7975 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7976 is deprecated and will be removed from pandas in a future version. Use
    7977 pandas.concat instead. 
    7978 self.df = self.df.append(df_add, ignore_index=True) 
    7979 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7980 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7981 is deprecated and will be removed from pandas in a future version. Use
    7982 pandas.concat instead. 
    7983 self.df = self.df.append(df_add, ignore_index=True) 
    7984 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7985 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7986 is deprecated and will be removed from pandas in a future version. Use
    7987 pandas.concat instead. 
    7988 self.df = self.df.append(df_add, ignore_index=True) 
    7989 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7990 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7991 is deprecated and will be removed from pandas in a future version. Use
    7992 pandas.concat instead. 
    7993 self.df = self.df.append(df_add, ignore_index=True) 
    7994 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    7995 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    7996 is deprecated and will be removed from pandas in a future version. Use
    7997 pandas.concat instead. 
    7998 self.df = self.df.append(df_add, ignore_index=True) 
    7999 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8000 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8001 is deprecated and will be removed from pandas in a future version. Use
    8002 pandas.concat instead. 
    8003 self.df = self.df.append(df_add, ignore_index=True) 
    8004 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8005 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8006 is deprecated and will be removed from pandas in a future version. Use
    8007 pandas.concat instead. 
    8008 self.df = self.df.append(df_add, ignore_index=True) 
    8009 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8010 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8011 is deprecated and will be removed from pandas in a future version. Use
    8012 pandas.concat instead. 
    8013 self.df = self.df.append(df_add, ignore_index=True) 
    8014 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8015 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8016 is deprecated and will be removed from pandas in a future version. Use
    8017 pandas.concat instead. 
    8018 self.df = self.df.append(df_add, ignore_index=True) 
    8019 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8020 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8021 is deprecated and will be removed from pandas in a future version. Use
    8022 pandas.concat instead. 
    8023 self.df = self.df.append(df_add, ignore_index=True) 
    8024 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8025 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8026 is deprecated and will be removed from pandas in a future version. Use
    8027 pandas.concat instead. 
    8028 self.df = self.df.append(df_add, ignore_index=True) 
    8029 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8030 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8031 is deprecated and will be removed from pandas in a future version. Use
    8032 pandas.concat instead. 
    8033 self.df = self.df.append(df_add, ignore_index=True) 
    8034 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8035 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8036 is deprecated and will be removed from pandas in a future version. Use
    8037 pandas.concat instead. 
    8038 self.df = self.df.append(df_add, ignore_index=True) 
    8039 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8040 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8041 is deprecated and will be removed from pandas in a future version. Use
    8042 pandas.concat instead. 
    8043 self.df = self.df.append(df_add, ignore_index=True) 
    8044 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8045 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8046 is deprecated and will be removed from pandas in a future version. Use
    8047 pandas.concat instead. 
    8048 self.df = self.df.append(df_add, ignore_index=True) 
    8049 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8050 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8051 is deprecated and will be removed from pandas in a future version. Use
    8052 pandas.concat instead. 
    8053 self.df = self.df.append(df_add, ignore_index=True) 
    8054 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8055 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8056 is deprecated and will be removed from pandas in a future version. Use
    8057 pandas.concat instead. 
    8058 self.df = self.df.append(df_add, ignore_index=True) 
    8059 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8060 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8061 is deprecated and will be removed from pandas in a future version. Use
    8062 pandas.concat instead. 
    8063 self.df = self.df.append(df_add, ignore_index=True) 
    8064 Unique peptide pairs with pseudobonds: 23 
    8065 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8066 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8067 is deprecated and will be removed from pandas in a future version. Use
    8068 pandas.concat instead. 
    8069 self.df = self.df.append(df_add, ignore_index=True) 
    8070 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8071 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8072 is deprecated and will be removed from pandas in a future version. Use
    8073 pandas.concat instead. 
    8074 self.df = self.df.append(df_add, ignore_index=True) 
    8075 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8076 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8077 is deprecated and will be removed from pandas in a future version. Use
    8078 pandas.concat instead. 
    8079 self.df = self.df.append(df_add, ignore_index=True) 
    8080 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8081 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8082 is deprecated and will be removed from pandas in a future version. Use
    8083 pandas.concat instead. 
    8084 self.df = self.df.append(df_add, ignore_index=True) 
    8085 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8086 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8087 is deprecated and will be removed from pandas in a future version. Use
    8088 pandas.concat instead. 
    8089 self.df = self.df.append(df_add, ignore_index=True) 
    8090 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8091 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8092 is deprecated and will be removed from pandas in a future version. Use
    8093 pandas.concat instead. 
    8094 self.df = self.df.append(df_add, ignore_index=True) 
    8095 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8096 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8097 is deprecated and will be removed from pandas in a future version. Use
    8098 pandas.concat instead. 
    8099 self.df = self.df.append(df_add, ignore_index=True) 
    8100 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8101 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8102 is deprecated and will be removed from pandas in a future version. Use
    8103 pandas.concat instead. 
    8104 self.df = self.df.append(df_add, ignore_index=True) 
    8105 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8106 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8107 is deprecated and will be removed from pandas in a future version. Use
    8108 pandas.concat instead. 
    8109 self.df = self.df.append(df_add, ignore_index=True) 
    8110 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8111 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8112 is deprecated and will be removed from pandas in a future version. Use
    8113 pandas.concat instead. 
    8114 self.df = self.df.append(df_add, ignore_index=True) 
    8115 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8116 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8117 is deprecated and will be removed from pandas in a future version. Use
    8118 pandas.concat instead. 
    8119 self.df = self.df.append(df_add, ignore_index=True) 
    8120 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8121 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8122 is deprecated and will be removed from pandas in a future version. Use
    8123 pandas.concat instead. 
    8124 self.df = self.df.append(df_add, ignore_index=True) 
    8125 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8126 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8127 is deprecated and will be removed from pandas in a future version. Use
    8128 pandas.concat instead. 
    8129 self.df = self.df.append(df_add, ignore_index=True) 
    8130 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8131 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8132 is deprecated and will be removed from pandas in a future version. Use
    8133 pandas.concat instead. 
    8134 self.df = self.df.append(df_add, ignore_index=True) 
    8135 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8136 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8137 is deprecated and will be removed from pandas in a future version. Use
    8138 pandas.concat instead. 
    8139 self.df = self.df.append(df_add, ignore_index=True) 
    8140 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8141 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8142 is deprecated and will be removed from pandas in a future version. Use
    8143 pandas.concat instead. 
    8144 self.df = self.df.append(df_add, ignore_index=True) 
    8145 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8146 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8147 is deprecated and will be removed from pandas in a future version. Use
    8148 pandas.concat instead. 
    8149 self.df = self.df.append(df_add, ignore_index=True) 
    8150 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8151 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8152 is deprecated and will be removed from pandas in a future version. Use
    8153 pandas.concat instead. 
    8154 self.df = self.df.append(df_add, ignore_index=True) 
    8155 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8156 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8157 is deprecated and will be removed from pandas in a future version. Use
    8158 pandas.concat instead. 
    8159 self.df = self.df.append(df_add, ignore_index=True) 
    8160 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8161 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8162 is deprecated and will be removed from pandas in a future version. Use
    8163 pandas.concat instead. 
    8164 self.df = self.df.append(df_add, ignore_index=True) 
    8165 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8166 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8167 is deprecated and will be removed from pandas in a future version. Use
    8168 pandas.concat instead. 
    8169 self.df = self.df.append(df_add, ignore_index=True) 
    8170 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8171 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8172 is deprecated and will be removed from pandas in a future version. Use
    8173 pandas.concat instead. 
    8174 self.df = self.df.append(df_add, ignore_index=True) 
    8175 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8176 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8177 is deprecated and will be removed from pandas in a future version. Use
    8178 pandas.concat instead. 
    8179 self.df = self.df.append(df_add, ignore_index=True) 
    8180 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8181 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8182 is deprecated and will be removed from pandas in a future version. Use
    8183 pandas.concat instead. 
    8184 self.df = self.df.append(df_add, ignore_index=True) 
    8185 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8186 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8187 is deprecated and will be removed from pandas in a future version. Use
    8188 pandas.concat instead. 
    8189 self.df = self.df.append(df_add, ignore_index=True) 
    8190 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8191 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8192 is deprecated and will be removed from pandas in a future version. Use
    8193 pandas.concat instead. 
    8194 self.df = self.df.append(df_add, ignore_index=True) 
    8195 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8196 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8197 is deprecated and will be removed from pandas in a future version. Use
    8198 pandas.concat instead. 
    8199 self.df = self.df.append(df_add, ignore_index=True) 
    8200 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8201 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8202 is deprecated and will be removed from pandas in a future version. Use
    8203 pandas.concat instead. 
    8204 self.df = self.df.append(df_add, ignore_index=True) 
    8205 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8206 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8207 is deprecated and will be removed from pandas in a future version. Use
    8208 pandas.concat instead. 
    8209 self.df = self.df.append(df_add, ignore_index=True) 
    8210 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8211 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8212 is deprecated and will be removed from pandas in a future version. Use
    8213 pandas.concat instead. 
    8214 self.df = self.df.append(df_add, ignore_index=True) 
    8215 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8216 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8217 is deprecated and will be removed from pandas in a future version. Use
    8218 pandas.concat instead. 
    8219 self.df = self.df.append(df_add, ignore_index=True) 
    8220 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8221 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8222 is deprecated and will be removed from pandas in a future version. Use
    8223 pandas.concat instead. 
    8224 self.df = self.df.append(df_add, ignore_index=True) 
    8225 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8226 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8227 is deprecated and will be removed from pandas in a future version. Use
    8228 pandas.concat instead. 
    8229 self.df = self.df.append(df_add, ignore_index=True) 
    8230 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8231 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8232 is deprecated and will be removed from pandas in a future version. Use
    8233 pandas.concat instead. 
    8234 self.df = self.df.append(df_add, ignore_index=True) 
    8235 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8236 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8237 is deprecated and will be removed from pandas in a future version. Use
    8238 pandas.concat instead. 
    8239 self.df = self.df.append(df_add, ignore_index=True) 
    8240 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8241 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8242 is deprecated and will be removed from pandas in a future version. Use
    8243 pandas.concat instead. 
    8244 self.df = self.df.append(df_add, ignore_index=True) 
    8245 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8246 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8247 is deprecated and will be removed from pandas in a future version. Use
    8248 pandas.concat instead. 
    8249 self.df = self.df.append(df_add, ignore_index=True) 
    8250 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8251 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8252 is deprecated and will be removed from pandas in a future version. Use
    8253 pandas.concat instead. 
    8254 self.df = self.df.append(df_add, ignore_index=True) 
    8255 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8256 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8257 is deprecated and will be removed from pandas in a future version. Use
    8258 pandas.concat instead. 
    8259 self.df = self.df.append(df_add, ignore_index=True) 
    8260 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8261 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8262 is deprecated and will be removed from pandas in a future version. Use
    8263 pandas.concat instead. 
    8264 self.df = self.df.append(df_add, ignore_index=True) 
    8265 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8266 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8267 is deprecated and will be removed from pandas in a future version. Use
    8268 pandas.concat instead. 
    8269 self.df = self.df.append(df_add, ignore_index=True) 
    8270 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8271 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8272 is deprecated and will be removed from pandas in a future version. Use
    8273 pandas.concat instead. 
    8274 self.df = self.df.append(df_add, ignore_index=True) 
    8275 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8276 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8277 is deprecated and will be removed from pandas in a future version. Use
    8278 pandas.concat instead. 
    8279 self.df = self.df.append(df_add, ignore_index=True) 
    8280 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8281 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8282 is deprecated and will be removed from pandas in a future version. Use
    8283 pandas.concat instead. 
    8284 self.df = self.df.append(df_add, ignore_index=True) 
    8285 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8286 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8287 is deprecated and will be removed from pandas in a future version. Use
    8288 pandas.concat instead. 
    8289 self.df = self.df.append(df_add, ignore_index=True) 
    8290 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8291 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8292 is deprecated and will be removed from pandas in a future version. Use
    8293 pandas.concat instead. 
    8294 self.df = self.df.append(df_add, ignore_index=True) 
    8295 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8296 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8297 is deprecated and will be removed from pandas in a future version. Use
    8298 pandas.concat instead. 
    8299 self.df = self.df.append(df_add, ignore_index=True) 
    8300 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8301 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8302 is deprecated and will be removed from pandas in a future version. Use
    8303 pandas.concat instead. 
    8304 self.df = self.df.append(df_add, ignore_index=True) 
    8305 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8306 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8307 is deprecated and will be removed from pandas in a future version. Use
    8308 pandas.concat instead. 
    8309 self.df = self.df.append(df_add, ignore_index=True) 
    8310 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8311 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8312 is deprecated and will be removed from pandas in a future version. Use
    8313 pandas.concat instead. 
    8314 self.df = self.df.append(df_add, ignore_index=True) 
    8315 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8316 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8317 is deprecated and will be removed from pandas in a future version. Use
    8318 pandas.concat instead. 
    8319 self.df = self.df.append(df_add, ignore_index=True) 
    8320 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8321 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8322 is deprecated and will be removed from pandas in a future version. Use
    8323 pandas.concat instead. 
    8324 self.df = self.df.append(df_add, ignore_index=True) 
    8325 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8326 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8327 is deprecated and will be removed from pandas in a future version. Use
    8328 pandas.concat instead. 
    8329 self.df = self.df.append(df_add, ignore_index=True) 
    8330 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8331 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8332 is deprecated and will be removed from pandas in a future version. Use
    8333 pandas.concat instead. 
    8334 self.df = self.df.append(df_add, ignore_index=True) 
    8335 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8336 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8337 is deprecated and will be removed from pandas in a future version. Use
    8338 pandas.concat instead. 
    8339 self.df = self.df.append(df_add, ignore_index=True) 
    8340 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8341 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8342 is deprecated and will be removed from pandas in a future version. Use
    8343 pandas.concat instead. 
    8344 self.df = self.df.append(df_add, ignore_index=True) 
    8345 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8346 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8347 is deprecated and will be removed from pandas in a future version. Use
    8348 pandas.concat instead. 
    8349 self.df = self.df.append(df_add, ignore_index=True) 
    8350 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8351 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8352 is deprecated and will be removed from pandas in a future version. Use
    8353 pandas.concat instead. 
    8354 self.df = self.df.append(df_add, ignore_index=True) 
    8355 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8356 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8357 is deprecated and will be removed from pandas in a future version. Use
    8358 pandas.concat instead. 
    8359 self.df = self.df.append(df_add, ignore_index=True) 
    8360 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8361 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8362 is deprecated and will be removed from pandas in a future version. Use
    8363 pandas.concat instead. 
    8364 self.df = self.df.append(df_add, ignore_index=True) 
    8365 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8366 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8367 is deprecated and will be removed from pandas in a future version. Use
    8368 pandas.concat instead. 
    8369 self.df = self.df.append(df_add, ignore_index=True) 
    8370 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8371 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8372 is deprecated and will be removed from pandas in a future version. Use
    8373 pandas.concat instead. 
    8374 self.df = self.df.append(df_add, ignore_index=True) 
    8375 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    8376 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate1-combined_1,2,4.pb 
    8377 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    8378 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate1-combined_1,2,4.tsv 
    8379  
    8380 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    8381 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate2-combined.xlsx 
    8382 Unique peptide pairs: 98 out of 98 
    8383 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8384 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8385 is deprecated and will be removed from pandas in a future version. Use
    8386 pandas.concat instead. 
    8387 self.df = self.df.append(df_add, ignore_index=True) 
    8388 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8389 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8390 is deprecated and will be removed from pandas in a future version. Use
    8391 pandas.concat instead. 
    8392 self.df = self.df.append(df_add, ignore_index=True) 
    8393 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8394 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8395 is deprecated and will be removed from pandas in a future version. Use
    8396 pandas.concat instead. 
    8397 self.df = self.df.append(df_add, ignore_index=True) 
    8398 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8399 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8400 is deprecated and will be removed from pandas in a future version. Use
    8401 pandas.concat instead. 
    8402 self.df = self.df.append(df_add, ignore_index=True) 
    8403 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8404 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8405 is deprecated and will be removed from pandas in a future version. Use
    8406 pandas.concat instead. 
    8407 self.df = self.df.append(df_add, ignore_index=True) 
    8408 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8409 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8410 is deprecated and will be removed from pandas in a future version. Use
    8411 pandas.concat instead. 
    8412 self.df = self.df.append(df_add, ignore_index=True) 
    8413 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8414 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8415 is deprecated and will be removed from pandas in a future version. Use
    8416 pandas.concat instead. 
    8417 self.df = self.df.append(df_add, ignore_index=True) 
    8418 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8419 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8420 is deprecated and will be removed from pandas in a future version. Use
    8421 pandas.concat instead. 
    8422 self.df = self.df.append(df_add, ignore_index=True) 
    8423 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8424 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8425 is deprecated and will be removed from pandas in a future version. Use
    8426 pandas.concat instead. 
    8427 self.df = self.df.append(df_add, ignore_index=True) 
    8428 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8429 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8430 is deprecated and will be removed from pandas in a future version. Use
    8431 pandas.concat instead. 
    8432 self.df = self.df.append(df_add, ignore_index=True) 
    8433 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8434 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8435 is deprecated and will be removed from pandas in a future version. Use
    8436 pandas.concat instead. 
    8437 self.df = self.df.append(df_add, ignore_index=True) 
    8438 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8439 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8440 is deprecated and will be removed from pandas in a future version. Use
    8441 pandas.concat instead. 
    8442 self.df = self.df.append(df_add, ignore_index=True) 
    8443 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8444 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8445 is deprecated and will be removed from pandas in a future version. Use
    8446 pandas.concat instead. 
    8447 self.df = self.df.append(df_add, ignore_index=True) 
    8448 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8449 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8450 is deprecated and will be removed from pandas in a future version. Use
    8451 pandas.concat instead. 
    8452 self.df = self.df.append(df_add, ignore_index=True) 
    8453 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8454 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8455 is deprecated and will be removed from pandas in a future version. Use
    8456 pandas.concat instead. 
    8457 self.df = self.df.append(df_add, ignore_index=True) 
    8458 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8459 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8460 is deprecated and will be removed from pandas in a future version. Use
    8461 pandas.concat instead. 
    8462 self.df = self.df.append(df_add, ignore_index=True) 
    8463 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8464 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8465 is deprecated and will be removed from pandas in a future version. Use
    8466 pandas.concat instead. 
    8467 self.df = self.df.append(df_add, ignore_index=True) 
    8468 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8469 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8470 is deprecated and will be removed from pandas in a future version. Use
    8471 pandas.concat instead. 
    8472 self.df = self.df.append(df_add, ignore_index=True) 
    8473 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8474 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8475 is deprecated and will be removed from pandas in a future version. Use
    8476 pandas.concat instead. 
    8477 self.df = self.df.append(df_add, ignore_index=True) 
    8478 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8479 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8480 is deprecated and will be removed from pandas in a future version. Use
    8481 pandas.concat instead. 
    8482 self.df = self.df.append(df_add, ignore_index=True) 
    8483 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8484 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8485 is deprecated and will be removed from pandas in a future version. Use
    8486 pandas.concat instead. 
    8487 self.df = self.df.append(df_add, ignore_index=True) 
    8488 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8489 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8490 is deprecated and will be removed from pandas in a future version. Use
    8491 pandas.concat instead. 
    8492 self.df = self.df.append(df_add, ignore_index=True) 
    8493 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8494 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8495 is deprecated and will be removed from pandas in a future version. Use
    8496 pandas.concat instead. 
    8497 self.df = self.df.append(df_add, ignore_index=True) 
    8498 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8499 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8500 is deprecated and will be removed from pandas in a future version. Use
    8501 pandas.concat instead. 
    8502 self.df = self.df.append(df_add, ignore_index=True) 
    8503 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8504 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8505 is deprecated and will be removed from pandas in a future version. Use
    8506 pandas.concat instead. 
    8507 self.df = self.df.append(df_add, ignore_index=True) 
    8508 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8509 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8510 is deprecated and will be removed from pandas in a future version. Use
    8511 pandas.concat instead. 
    8512 self.df = self.df.append(df_add, ignore_index=True) 
    8513 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8514 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8515 is deprecated and will be removed from pandas in a future version. Use
    8516 pandas.concat instead. 
    8517 self.df = self.df.append(df_add, ignore_index=True) 
    8518 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8519 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8520 is deprecated and will be removed from pandas in a future version. Use
    8521 pandas.concat instead. 
    8522 self.df = self.df.append(df_add, ignore_index=True) 
    8523 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8524 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8525 is deprecated and will be removed from pandas in a future version. Use
    8526 pandas.concat instead. 
    8527 self.df = self.df.append(df_add, ignore_index=True) 
    8528 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8529 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8530 is deprecated and will be removed from pandas in a future version. Use
    8531 pandas.concat instead. 
    8532 self.df = self.df.append(df_add, ignore_index=True) 
    8533 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8534 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8535 is deprecated and will be removed from pandas in a future version. Use
    8536 pandas.concat instead. 
    8537 self.df = self.df.append(df_add, ignore_index=True) 
    8538 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8539 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8540 is deprecated and will be removed from pandas in a future version. Use
    8541 pandas.concat instead. 
    8542 self.df = self.df.append(df_add, ignore_index=True) 
    8543 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8544 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8545 is deprecated and will be removed from pandas in a future version. Use
    8546 pandas.concat instead. 
    8547 self.df = self.df.append(df_add, ignore_index=True) 
    8548 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8549 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8550 is deprecated and will be removed from pandas in a future version. Use
    8551 pandas.concat instead. 
    8552 self.df = self.df.append(df_add, ignore_index=True) 
    8553 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8554 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8555 is deprecated and will be removed from pandas in a future version. Use
    8556 pandas.concat instead. 
    8557 self.df = self.df.append(df_add, ignore_index=True) 
    8558 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8559 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8560 is deprecated and will be removed from pandas in a future version. Use
    8561 pandas.concat instead. 
    8562 self.df = self.df.append(df_add, ignore_index=True) 
    8563 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8564 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8565 is deprecated and will be removed from pandas in a future version. Use
    8566 pandas.concat instead. 
    8567 self.df = self.df.append(df_add, ignore_index=True) 
    8568 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8569 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8570 is deprecated and will be removed from pandas in a future version. Use
    8571 pandas.concat instead. 
    8572 self.df = self.df.append(df_add, ignore_index=True) 
    8573 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8574 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8575 is deprecated and will be removed from pandas in a future version. Use
    8576 pandas.concat instead. 
    8577 self.df = self.df.append(df_add, ignore_index=True) 
    8578 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8579 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8580 is deprecated and will be removed from pandas in a future version. Use
    8581 pandas.concat instead. 
    8582 self.df = self.df.append(df_add, ignore_index=True) 
    8583 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8584 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8585 is deprecated and will be removed from pandas in a future version. Use
    8586 pandas.concat instead. 
    8587 self.df = self.df.append(df_add, ignore_index=True) 
    8588 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8589 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8590 is deprecated and will be removed from pandas in a future version. Use
    8591 pandas.concat instead. 
    8592 self.df = self.df.append(df_add, ignore_index=True) 
    8593 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8594 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8595 is deprecated and will be removed from pandas in a future version. Use
    8596 pandas.concat instead. 
    8597 self.df = self.df.append(df_add, ignore_index=True) 
    8598 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8599 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8600 is deprecated and will be removed from pandas in a future version. Use
    8601 pandas.concat instead. 
    8602 self.df = self.df.append(df_add, ignore_index=True) 
    8603 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8604 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8605 is deprecated and will be removed from pandas in a future version. Use
    8606 pandas.concat instead. 
    8607 self.df = self.df.append(df_add, ignore_index=True) 
    8608 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8609 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8610 is deprecated and will be removed from pandas in a future version. Use
    8611 pandas.concat instead. 
    8612 self.df = self.df.append(df_add, ignore_index=True) 
    8613 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8614 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8615 is deprecated and will be removed from pandas in a future version. Use
    8616 pandas.concat instead. 
    8617 self.df = self.df.append(df_add, ignore_index=True) 
    8618 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8619 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8620 is deprecated and will be removed from pandas in a future version. Use
    8621 pandas.concat instead. 
    8622 self.df = self.df.append(df_add, ignore_index=True) 
    8623 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8624 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8625 is deprecated and will be removed from pandas in a future version. Use
    8626 pandas.concat instead. 
    8627 self.df = self.df.append(df_add, ignore_index=True) 
    8628 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8629 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8630 is deprecated and will be removed from pandas in a future version. Use
    8631 pandas.concat instead. 
    8632 self.df = self.df.append(df_add, ignore_index=True) 
    8633 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8634 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8635 is deprecated and will be removed from pandas in a future version. Use
    8636 pandas.concat instead. 
    8637 self.df = self.df.append(df_add, ignore_index=True) 
    8638 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8639 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8640 is deprecated and will be removed from pandas in a future version. Use
    8641 pandas.concat instead. 
    8642 self.df = self.df.append(df_add, ignore_index=True) 
    8643 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8644 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8645 is deprecated and will be removed from pandas in a future version. Use
    8646 pandas.concat instead. 
    8647 self.df = self.df.append(df_add, ignore_index=True) 
    8648 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8649 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8650 is deprecated and will be removed from pandas in a future version. Use
    8651 pandas.concat instead. 
    8652 self.df = self.df.append(df_add, ignore_index=True) 
    8653 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8654 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8655 is deprecated and will be removed from pandas in a future version. Use
    8656 pandas.concat instead. 
    8657 self.df = self.df.append(df_add, ignore_index=True) 
    8658 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8659 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8660 is deprecated and will be removed from pandas in a future version. Use
    8661 pandas.concat instead. 
    8662 self.df = self.df.append(df_add, ignore_index=True) 
    8663 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8664 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8665 is deprecated and will be removed from pandas in a future version. Use
    8666 pandas.concat instead. 
    8667 self.df = self.df.append(df_add, ignore_index=True) 
    8668 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8669 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8670 is deprecated and will be removed from pandas in a future version. Use
    8671 pandas.concat instead. 
    8672 self.df = self.df.append(df_add, ignore_index=True) 
    8673 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8674 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8675 is deprecated and will be removed from pandas in a future version. Use
    8676 pandas.concat instead. 
    8677 self.df = self.df.append(df_add, ignore_index=True) 
    8678 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8679 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8680 is deprecated and will be removed from pandas in a future version. Use
    8681 pandas.concat instead. 
    8682 self.df = self.df.append(df_add, ignore_index=True) 
    8683 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8684 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8685 is deprecated and will be removed from pandas in a future version. Use
    8686 pandas.concat instead. 
    8687 self.df = self.df.append(df_add, ignore_index=True) 
    8688 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8689 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8690 is deprecated and will be removed from pandas in a future version. Use
    8691 pandas.concat instead. 
    8692 self.df = self.df.append(df_add, ignore_index=True) 
    8693 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8694 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8695 is deprecated and will be removed from pandas in a future version. Use
    8696 pandas.concat instead. 
    8697 self.df = self.df.append(df_add, ignore_index=True) 
    8698 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8699 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8700 is deprecated and will be removed from pandas in a future version. Use
    8701 pandas.concat instead. 
    8702 self.df = self.df.append(df_add, ignore_index=True) 
    8703 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8704 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8705 is deprecated and will be removed from pandas in a future version. Use
    8706 pandas.concat instead. 
    8707 self.df = self.df.append(df_add, ignore_index=True) 
    8708 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8709 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8710 is deprecated and will be removed from pandas in a future version. Use
    8711 pandas.concat instead. 
    8712 self.df = self.df.append(df_add, ignore_index=True) 
    8713 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8714 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8715 is deprecated and will be removed from pandas in a future version. Use
    8716 pandas.concat instead. 
    8717 self.df = self.df.append(df_add, ignore_index=True) 
    8718 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8719 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8720 is deprecated and will be removed from pandas in a future version. Use
    8721 pandas.concat instead. 
    8722 self.df = self.df.append(df_add, ignore_index=True) 
    8723 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8724 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8725 is deprecated and will be removed from pandas in a future version. Use
    8726 pandas.concat instead. 
    8727 self.df = self.df.append(df_add, ignore_index=True) 
    8728 Unique peptide pairs with pseudobonds: 29 
    8729 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8730 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8731 is deprecated and will be removed from pandas in a future version. Use
    8732 pandas.concat instead. 
    8733 self.df = self.df.append(df_add, ignore_index=True) 
    8734 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8735 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8736 is deprecated and will be removed from pandas in a future version. Use
    8737 pandas.concat instead. 
    8738 self.df = self.df.append(df_add, ignore_index=True) 
    8739 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8740 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8741 is deprecated and will be removed from pandas in a future version. Use
    8742 pandas.concat instead. 
    8743 self.df = self.df.append(df_add, ignore_index=True) 
    8744 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8745 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8746 is deprecated and will be removed from pandas in a future version. Use
    8747 pandas.concat instead. 
    8748 self.df = self.df.append(df_add, ignore_index=True) 
    8749 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8750 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8751 is deprecated and will be removed from pandas in a future version. Use
    8752 pandas.concat instead. 
    8753 self.df = self.df.append(df_add, ignore_index=True) 
    8754 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8755 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8756 is deprecated and will be removed from pandas in a future version. Use
    8757 pandas.concat instead. 
    8758 self.df = self.df.append(df_add, ignore_index=True) 
    8759 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8760 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8761 is deprecated and will be removed from pandas in a future version. Use
    8762 pandas.concat instead. 
    8763 self.df = self.df.append(df_add, ignore_index=True) 
    8764 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8765 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8766 is deprecated and will be removed from pandas in a future version. Use
    8767 pandas.concat instead. 
    8768 self.df = self.df.append(df_add, ignore_index=True) 
    8769 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8770 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8771 is deprecated and will be removed from pandas in a future version. Use
    8772 pandas.concat instead. 
    8773 self.df = self.df.append(df_add, ignore_index=True) 
    8774 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8775 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8776 is deprecated and will be removed from pandas in a future version. Use
    8777 pandas.concat instead. 
    8778 self.df = self.df.append(df_add, ignore_index=True) 
    8779 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8780 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8781 is deprecated and will be removed from pandas in a future version. Use
    8782 pandas.concat instead. 
    8783 self.df = self.df.append(df_add, ignore_index=True) 
    8784 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8785 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8786 is deprecated and will be removed from pandas in a future version. Use
    8787 pandas.concat instead. 
    8788 self.df = self.df.append(df_add, ignore_index=True) 
    8789 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8790 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8791 is deprecated and will be removed from pandas in a future version. Use
    8792 pandas.concat instead. 
    8793 self.df = self.df.append(df_add, ignore_index=True) 
    8794 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8795 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8796 is deprecated and will be removed from pandas in a future version. Use
    8797 pandas.concat instead. 
    8798 self.df = self.df.append(df_add, ignore_index=True) 
    8799 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8800 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8801 is deprecated and will be removed from pandas in a future version. Use
    8802 pandas.concat instead. 
    8803 self.df = self.df.append(df_add, ignore_index=True) 
    8804 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8805 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8806 is deprecated and will be removed from pandas in a future version. Use
    8807 pandas.concat instead. 
    8808 self.df = self.df.append(df_add, ignore_index=True) 
    8809 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8810 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8811 is deprecated and will be removed from pandas in a future version. Use
    8812 pandas.concat instead. 
    8813 self.df = self.df.append(df_add, ignore_index=True) 
    8814 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8815 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8816 is deprecated and will be removed from pandas in a future version. Use
    8817 pandas.concat instead. 
    8818 self.df = self.df.append(df_add, ignore_index=True) 
    8819 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8820 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8821 is deprecated and will be removed from pandas in a future version. Use
    8822 pandas.concat instead. 
    8823 self.df = self.df.append(df_add, ignore_index=True) 
    8824 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8825 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8826 is deprecated and will be removed from pandas in a future version. Use
    8827 pandas.concat instead. 
    8828 self.df = self.df.append(df_add, ignore_index=True) 
    8829 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8830 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8831 is deprecated and will be removed from pandas in a future version. Use
    8832 pandas.concat instead. 
    8833 self.df = self.df.append(df_add, ignore_index=True) 
    8834 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8835 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8836 is deprecated and will be removed from pandas in a future version. Use
    8837 pandas.concat instead. 
    8838 self.df = self.df.append(df_add, ignore_index=True) 
    8839 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8840 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8841 is deprecated and will be removed from pandas in a future version. Use
    8842 pandas.concat instead. 
    8843 self.df = self.df.append(df_add, ignore_index=True) 
    8844 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8845 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8846 is deprecated and will be removed from pandas in a future version. Use
    8847 pandas.concat instead. 
    8848 self.df = self.df.append(df_add, ignore_index=True) 
    8849 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8850 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8851 is deprecated and will be removed from pandas in a future version. Use
    8852 pandas.concat instead. 
    8853 self.df = self.df.append(df_add, ignore_index=True) 
    8854 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8855 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8856 is deprecated and will be removed from pandas in a future version. Use
    8857 pandas.concat instead. 
    8858 self.df = self.df.append(df_add, ignore_index=True) 
    8859 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8860 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8861 is deprecated and will be removed from pandas in a future version. Use
    8862 pandas.concat instead. 
    8863 self.df = self.df.append(df_add, ignore_index=True) 
    8864 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8865 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8866 is deprecated and will be removed from pandas in a future version. Use
    8867 pandas.concat instead. 
    8868 self.df = self.df.append(df_add, ignore_index=True) 
    8869 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8870 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8871 is deprecated and will be removed from pandas in a future version. Use
    8872 pandas.concat instead. 
    8873 self.df = self.df.append(df_add, ignore_index=True) 
    8874 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8875 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8876 is deprecated and will be removed from pandas in a future version. Use
    8877 pandas.concat instead. 
    8878 self.df = self.df.append(df_add, ignore_index=True) 
    8879 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8880 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8881 is deprecated and will be removed from pandas in a future version. Use
    8882 pandas.concat instead. 
    8883 self.df = self.df.append(df_add, ignore_index=True) 
    8884 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8885 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8886 is deprecated and will be removed from pandas in a future version. Use
    8887 pandas.concat instead. 
    8888 self.df = self.df.append(df_add, ignore_index=True) 
    8889 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8890 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8891 is deprecated and will be removed from pandas in a future version. Use
    8892 pandas.concat instead. 
    8893 self.df = self.df.append(df_add, ignore_index=True) 
    8894 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8895 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8896 is deprecated and will be removed from pandas in a future version. Use
    8897 pandas.concat instead. 
    8898 self.df = self.df.append(df_add, ignore_index=True) 
    8899 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8900 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8901 is deprecated and will be removed from pandas in a future version. Use
    8902 pandas.concat instead. 
    8903 self.df = self.df.append(df_add, ignore_index=True) 
    8904 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8905 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8906 is deprecated and will be removed from pandas in a future version. Use
    8907 pandas.concat instead. 
    8908 self.df = self.df.append(df_add, ignore_index=True) 
    8909 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8910 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8911 is deprecated and will be removed from pandas in a future version. Use
    8912 pandas.concat instead. 
    8913 self.df = self.df.append(df_add, ignore_index=True) 
    8914 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8915 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8916 is deprecated and will be removed from pandas in a future version. Use
    8917 pandas.concat instead. 
    8918 self.df = self.df.append(df_add, ignore_index=True) 
    8919 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8920 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8921 is deprecated and will be removed from pandas in a future version. Use
    8922 pandas.concat instead. 
    8923 self.df = self.df.append(df_add, ignore_index=True) 
    8924 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8925 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8926 is deprecated and will be removed from pandas in a future version. Use
    8927 pandas.concat instead. 
    8928 self.df = self.df.append(df_add, ignore_index=True) 
    8929 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8930 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8931 is deprecated and will be removed from pandas in a future version. Use
    8932 pandas.concat instead. 
    8933 self.df = self.df.append(df_add, ignore_index=True) 
    8934 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8935 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8936 is deprecated and will be removed from pandas in a future version. Use
    8937 pandas.concat instead. 
    8938 self.df = self.df.append(df_add, ignore_index=True) 
    8939 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8940 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8941 is deprecated and will be removed from pandas in a future version. Use
    8942 pandas.concat instead. 
    8943 self.df = self.df.append(df_add, ignore_index=True) 
    8944 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8945 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8946 is deprecated and will be removed from pandas in a future version. Use
    8947 pandas.concat instead. 
    8948 self.df = self.df.append(df_add, ignore_index=True) 
    8949 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8950 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8951 is deprecated and will be removed from pandas in a future version. Use
    8952 pandas.concat instead. 
    8953 self.df = self.df.append(df_add, ignore_index=True) 
    8954 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8955 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8956 is deprecated and will be removed from pandas in a future version. Use
    8957 pandas.concat instead. 
    8958 self.df = self.df.append(df_add, ignore_index=True) 
    8959 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8960 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8961 is deprecated and will be removed from pandas in a future version. Use
    8962 pandas.concat instead. 
    8963 self.df = self.df.append(df_add, ignore_index=True) 
    8964 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8965 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8966 is deprecated and will be removed from pandas in a future version. Use
    8967 pandas.concat instead. 
    8968 self.df = self.df.append(df_add, ignore_index=True) 
    8969 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8970 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8971 is deprecated and will be removed from pandas in a future version. Use
    8972 pandas.concat instead. 
    8973 self.df = self.df.append(df_add, ignore_index=True) 
    8974 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8975 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8976 is deprecated and will be removed from pandas in a future version. Use
    8977 pandas.concat instead. 
    8978 self.df = self.df.append(df_add, ignore_index=True) 
    8979 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8980 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8981 is deprecated and will be removed from pandas in a future version. Use
    8982 pandas.concat instead. 
    8983 self.df = self.df.append(df_add, ignore_index=True) 
    8984 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8985 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8986 is deprecated and will be removed from pandas in a future version. Use
    8987 pandas.concat instead. 
    8988 self.df = self.df.append(df_add, ignore_index=True) 
    8989 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8990 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8991 is deprecated and will be removed from pandas in a future version. Use
    8992 pandas.concat instead. 
    8993 self.df = self.df.append(df_add, ignore_index=True) 
    8994 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    8995 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    8996 is deprecated and will be removed from pandas in a future version. Use
    8997 pandas.concat instead. 
    8998 self.df = self.df.append(df_add, ignore_index=True) 
    8999 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9000 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9001 is deprecated and will be removed from pandas in a future version. Use
    9002 pandas.concat instead. 
    9003 self.df = self.df.append(df_add, ignore_index=True) 
    9004 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9005 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9006 is deprecated and will be removed from pandas in a future version. Use
    9007 pandas.concat instead. 
    9008 self.df = self.df.append(df_add, ignore_index=True) 
    9009 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9010 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9011 is deprecated and will be removed from pandas in a future version. Use
    9012 pandas.concat instead. 
    9013 self.df = self.df.append(df_add, ignore_index=True) 
    9014 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9015 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9016 is deprecated and will be removed from pandas in a future version. Use
    9017 pandas.concat instead. 
    9018 self.df = self.df.append(df_add, ignore_index=True) 
    9019 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9020 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9021 is deprecated and will be removed from pandas in a future version. Use
    9022 pandas.concat instead. 
    9023 self.df = self.df.append(df_add, ignore_index=True) 
    9024 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9025 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9026 is deprecated and will be removed from pandas in a future version. Use
    9027 pandas.concat instead. 
    9028 self.df = self.df.append(df_add, ignore_index=True) 
    9029 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9030 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9031 is deprecated and will be removed from pandas in a future version. Use
    9032 pandas.concat instead. 
    9033 self.df = self.df.append(df_add, ignore_index=True) 
    9034 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9035 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9036 is deprecated and will be removed from pandas in a future version. Use
    9037 pandas.concat instead. 
    9038 self.df = self.df.append(df_add, ignore_index=True) 
    9039 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9040 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9041 is deprecated and will be removed from pandas in a future version. Use
    9042 pandas.concat instead. 
    9043 self.df = self.df.append(df_add, ignore_index=True) 
    9044 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9045 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9046 is deprecated and will be removed from pandas in a future version. Use
    9047 pandas.concat instead. 
    9048 self.df = self.df.append(df_add, ignore_index=True) 
    9049 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9050 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9051 is deprecated and will be removed from pandas in a future version. Use
    9052 pandas.concat instead. 
    9053 self.df = self.df.append(df_add, ignore_index=True) 
    9054 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9055 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9056 is deprecated and will be removed from pandas in a future version. Use
    9057 pandas.concat instead. 
    9058 self.df = self.df.append(df_add, ignore_index=True) 
    9059 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9060 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9061 is deprecated and will be removed from pandas in a future version. Use
    9062 pandas.concat instead. 
    9063 self.df = self.df.append(df_add, ignore_index=True) 
    9064 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9065 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9066 is deprecated and will be removed from pandas in a future version. Use
    9067 pandas.concat instead. 
    9068 self.df = self.df.append(df_add, ignore_index=True) 
    9069 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9070 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9071 is deprecated and will be removed from pandas in a future version. Use
    9072 pandas.concat instead. 
    9073 self.df = self.df.append(df_add, ignore_index=True) 
    9074 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9075 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9076 is deprecated and will be removed from pandas in a future version. Use
    9077 pandas.concat instead. 
    9078 self.df = self.df.append(df_add, ignore_index=True) 
    9079 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9080 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9081 is deprecated and will be removed from pandas in a future version. Use
    9082 pandas.concat instead. 
    9083 self.df = self.df.append(df_add, ignore_index=True) 
    9084 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9085 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9086 is deprecated and will be removed from pandas in a future version. Use
    9087 pandas.concat instead. 
    9088 self.df = self.df.append(df_add, ignore_index=True) 
    9089 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9090 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9091 is deprecated and will be removed from pandas in a future version. Use
    9092 pandas.concat instead. 
    9093 self.df = self.df.append(df_add, ignore_index=True) 
    9094 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9095 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9096 is deprecated and will be removed from pandas in a future version. Use
    9097 pandas.concat instead. 
    9098 self.df = self.df.append(df_add, ignore_index=True) 
    9099 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9100 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9101 is deprecated and will be removed from pandas in a future version. Use
    9102 pandas.concat instead. 
    9103 self.df = self.df.append(df_add, ignore_index=True) 
    9104 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9105 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9106 is deprecated and will be removed from pandas in a future version. Use
    9107 pandas.concat instead. 
    9108 self.df = self.df.append(df_add, ignore_index=True) 
    9109 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9110 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9111 is deprecated and will be removed from pandas in a future version. Use
    9112 pandas.concat instead. 
    9113 self.df = self.df.append(df_add, ignore_index=True) 
    9114 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9115 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9116 is deprecated and will be removed from pandas in a future version. Use
    9117 pandas.concat instead. 
    9118 self.df = self.df.append(df_add, ignore_index=True) 
    9119 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9120 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9121 is deprecated and will be removed from pandas in a future version. Use
    9122 pandas.concat instead. 
    9123 self.df = self.df.append(df_add, ignore_index=True) 
    9124 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9125 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9126 is deprecated and will be removed from pandas in a future version. Use
    9127 pandas.concat instead. 
    9128 self.df = self.df.append(df_add, ignore_index=True) 
    9129 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    9130 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate2-combined_1,2,4.pb 
    9131 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    9132 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate2-combined_1,2,4.tsv 
    9133 
    9134 QWindowsWindow::setGeometry: Unable to set geometry 1920x1060+0+34 (frame:
    9135 1942x1116-11-11) on QWidgetWindow/"MainWindowClassWindow" on
    9136 "\\\\.\DISPLAY225". Resulting geometry: 1920x986+0+34 (frame: 1942x1042-11-11)
    9137 margins: 11, 45, 11, 11 minimum size: 643x530 MINMAXINFO maxSize=0,0
    9138 maxpos=0,0 mintrack=1308,1116 maxtrack=0,0) 
    9139 
    9140 QWindowsWindow::setGeometry: Unable to set geometry 1920x1292+0+34 (frame:
    9141 1942x1348-11-11) on QWidgetWindow/"MainWindowClassWindow" on
    9142 "\\\\.\DISPLAY225". Resulting geometry: 1920x986+0+34 (frame: 1942x1042-11-11)
    9143 margins: 11, 45, 11, 11 minimum size: 904x646 MINMAXINFO maxSize=0,0
    9144 maxpos=0,0 mintrack=1830,1348 maxtrack=0,0) 
    9145 
    9146 > select clear
    9147 
    9148 Drag select of 2 atoms, 218 residues, 2 bonds, 5
    9149 accessible_interaction_space.mrc , 26 pseudobonds 
    9150 
    9151 > select clear
    9152 
    9153 QWindowsWindow::setGeometry: Unable to set geometry 224x302+1344+437 (frame:
    9154 240x341+1336+406) on QWidgetWindow/"QDockWidgetClassWindow" on
    9155 "\\\\.\DISPLAY225". Resulting geometry: 672x520+1344+437 (frame:
    9156 688x559+1336+406) margins: 8, 31, 8, 8 minimum size: 336x260 maximum size:
    9157 524287x524287 MINMAXINFO maxSize=0,0 maxpos=0,0 mintrack=688,559
    9158 maxtrack=1048590,1048613) 
    9159 
    9160 > volume #5 level 7.974
    9161 
    9162 > volume #5 level 6
    9163 
    9164 > volume #5 region 0,0,0,89,107,95 step 1
    9165 
    9166 > volume #5 region 0,0,0,89,107,95 step 1
    9167 
    9168 > volume #5 level 7.995
    9169 
    9170  
    9171 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    9172 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate3-combined.xlsx 
    9173 Unique peptide pairs: 95 out of 95 
    9174 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9175 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9176 is deprecated and will be removed from pandas in a future version. Use
    9177 pandas.concat instead. 
    9178 self.df = self.df.append(df_add, ignore_index=True) 
    9179 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9180 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9181 is deprecated and will be removed from pandas in a future version. Use
    9182 pandas.concat instead. 
    9183 self.df = self.df.append(df_add, ignore_index=True) 
    9184 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9185 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9186 is deprecated and will be removed from pandas in a future version. Use
    9187 pandas.concat instead. 
    9188 self.df = self.df.append(df_add, ignore_index=True) 
    9189 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9190 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9191 is deprecated and will be removed from pandas in a future version. Use
    9192 pandas.concat instead. 
    9193 self.df = self.df.append(df_add, ignore_index=True) 
    9194 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9195 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9196 is deprecated and will be removed from pandas in a future version. Use
    9197 pandas.concat instead. 
    9198 self.df = self.df.append(df_add, ignore_index=True) 
    9199 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9200 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9201 is deprecated and will be removed from pandas in a future version. Use
    9202 pandas.concat instead. 
    9203 self.df = self.df.append(df_add, ignore_index=True) 
    9204 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9205 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9206 is deprecated and will be removed from pandas in a future version. Use
    9207 pandas.concat instead. 
    9208 self.df = self.df.append(df_add, ignore_index=True) 
    9209 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9210 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9211 is deprecated and will be removed from pandas in a future version. Use
    9212 pandas.concat instead. 
    9213 self.df = self.df.append(df_add, ignore_index=True) 
    9214 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9215 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9216 is deprecated and will be removed from pandas in a future version. Use
    9217 pandas.concat instead. 
    9218 self.df = self.df.append(df_add, ignore_index=True) 
    9219 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9220 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9221 is deprecated and will be removed from pandas in a future version. Use
    9222 pandas.concat instead. 
    9223 self.df = self.df.append(df_add, ignore_index=True) 
    9224 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9225 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9226 is deprecated and will be removed from pandas in a future version. Use
    9227 pandas.concat instead. 
    9228 self.df = self.df.append(df_add, ignore_index=True) 
    9229 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9230 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9231 is deprecated and will be removed from pandas in a future version. Use
    9232 pandas.concat instead. 
    9233 self.df = self.df.append(df_add, ignore_index=True) 
    9234 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9235 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9236 is deprecated and will be removed from pandas in a future version. Use
    9237 pandas.concat instead. 
    9238 self.df = self.df.append(df_add, ignore_index=True) 
    9239 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9240 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9241 is deprecated and will be removed from pandas in a future version. Use
    9242 pandas.concat instead. 
    9243 self.df = self.df.append(df_add, ignore_index=True) 
    9244 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9245 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9246 is deprecated and will be removed from pandas in a future version. Use
    9247 pandas.concat instead. 
    9248 self.df = self.df.append(df_add, ignore_index=True) 
    9249 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9250 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9251 is deprecated and will be removed from pandas in a future version. Use
    9252 pandas.concat instead. 
    9253 self.df = self.df.append(df_add, ignore_index=True) 
    9254 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9255 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9256 is deprecated and will be removed from pandas in a future version. Use
    9257 pandas.concat instead. 
    9258 self.df = self.df.append(df_add, ignore_index=True) 
    9259 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9260 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9261 is deprecated and will be removed from pandas in a future version. Use
    9262 pandas.concat instead. 
    9263 self.df = self.df.append(df_add, ignore_index=True) 
    9264 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9265 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9266 is deprecated and will be removed from pandas in a future version. Use
    9267 pandas.concat instead. 
    9268 self.df = self.df.append(df_add, ignore_index=True) 
    9269 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9270 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9271 is deprecated and will be removed from pandas in a future version. Use
    9272 pandas.concat instead. 
    9273 self.df = self.df.append(df_add, ignore_index=True) 
    9274 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9275 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9276 is deprecated and will be removed from pandas in a future version. Use
    9277 pandas.concat instead. 
    9278 self.df = self.df.append(df_add, ignore_index=True) 
    9279 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9280 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9281 is deprecated and will be removed from pandas in a future version. Use
    9282 pandas.concat instead. 
    9283 self.df = self.df.append(df_add, ignore_index=True) 
    9284 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9285 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9286 is deprecated and will be removed from pandas in a future version. Use
    9287 pandas.concat instead. 
    9288 self.df = self.df.append(df_add, ignore_index=True) 
    9289 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9290 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9291 is deprecated and will be removed from pandas in a future version. Use
    9292 pandas.concat instead. 
    9293 self.df = self.df.append(df_add, ignore_index=True) 
    9294 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9295 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9296 is deprecated and will be removed from pandas in a future version. Use
    9297 pandas.concat instead. 
    9298 self.df = self.df.append(df_add, ignore_index=True) 
    9299 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9300 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9301 is deprecated and will be removed from pandas in a future version. Use
    9302 pandas.concat instead. 
    9303 self.df = self.df.append(df_add, ignore_index=True) 
    9304 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9305 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9306 is deprecated and will be removed from pandas in a future version. Use
    9307 pandas.concat instead. 
    9308 self.df = self.df.append(df_add, ignore_index=True) 
    9309 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9310 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9311 is deprecated and will be removed from pandas in a future version. Use
    9312 pandas.concat instead. 
    9313 self.df = self.df.append(df_add, ignore_index=True) 
    9314 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9315 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9316 is deprecated and will be removed from pandas in a future version. Use
    9317 pandas.concat instead. 
    9318 self.df = self.df.append(df_add, ignore_index=True) 
    9319 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9320 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9321 is deprecated and will be removed from pandas in a future version. Use
    9322 pandas.concat instead. 
    9323 self.df = self.df.append(df_add, ignore_index=True) 
    9324 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9325 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9326 is deprecated and will be removed from pandas in a future version. Use
    9327 pandas.concat instead. 
    9328 self.df = self.df.append(df_add, ignore_index=True) 
    9329 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9330 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9331 is deprecated and will be removed from pandas in a future version. Use
    9332 pandas.concat instead. 
    9333 self.df = self.df.append(df_add, ignore_index=True) 
    9334 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9335 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9336 is deprecated and will be removed from pandas in a future version. Use
    9337 pandas.concat instead. 
    9338 self.df = self.df.append(df_add, ignore_index=True) 
    9339 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9340 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9341 is deprecated and will be removed from pandas in a future version. Use
    9342 pandas.concat instead. 
    9343 self.df = self.df.append(df_add, ignore_index=True) 
    9344 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9345 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9346 is deprecated and will be removed from pandas in a future version. Use
    9347 pandas.concat instead. 
    9348 self.df = self.df.append(df_add, ignore_index=True) 
    9349 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9350 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9351 is deprecated and will be removed from pandas in a future version. Use
    9352 pandas.concat instead. 
    9353 self.df = self.df.append(df_add, ignore_index=True) 
    9354 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9355 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9356 is deprecated and will be removed from pandas in a future version. Use
    9357 pandas.concat instead. 
    9358 self.df = self.df.append(df_add, ignore_index=True) 
    9359 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9360 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9361 is deprecated and will be removed from pandas in a future version. Use
    9362 pandas.concat instead. 
    9363 self.df = self.df.append(df_add, ignore_index=True) 
    9364 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9365 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9366 is deprecated and will be removed from pandas in a future version. Use
    9367 pandas.concat instead. 
    9368 self.df = self.df.append(df_add, ignore_index=True) 
    9369 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9370 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9371 is deprecated and will be removed from pandas in a future version. Use
    9372 pandas.concat instead. 
    9373 self.df = self.df.append(df_add, ignore_index=True) 
    9374 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9375 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9376 is deprecated and will be removed from pandas in a future version. Use
    9377 pandas.concat instead. 
    9378 self.df = self.df.append(df_add, ignore_index=True) 
    9379 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9380 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9381 is deprecated and will be removed from pandas in a future version. Use
    9382 pandas.concat instead. 
    9383 self.df = self.df.append(df_add, ignore_index=True) 
    9384 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9385 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9386 is deprecated and will be removed from pandas in a future version. Use
    9387 pandas.concat instead. 
    9388 self.df = self.df.append(df_add, ignore_index=True) 
    9389 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9390 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9391 is deprecated and will be removed from pandas in a future version. Use
    9392 pandas.concat instead. 
    9393 self.df = self.df.append(df_add, ignore_index=True) 
    9394 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9395 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9396 is deprecated and will be removed from pandas in a future version. Use
    9397 pandas.concat instead. 
    9398 self.df = self.df.append(df_add, ignore_index=True) 
    9399 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9400 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9401 is deprecated and will be removed from pandas in a future version. Use
    9402 pandas.concat instead. 
    9403 self.df = self.df.append(df_add, ignore_index=True) 
    9404 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9405 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9406 is deprecated and will be removed from pandas in a future version. Use
    9407 pandas.concat instead. 
    9408 self.df = self.df.append(df_add, ignore_index=True) 
    9409 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9410 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9411 is deprecated and will be removed from pandas in a future version. Use
    9412 pandas.concat instead. 
    9413 self.df = self.df.append(df_add, ignore_index=True) 
    9414 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9415 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9416 is deprecated and will be removed from pandas in a future version. Use
    9417 pandas.concat instead. 
    9418 self.df = self.df.append(df_add, ignore_index=True) 
    9419 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9420 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9421 is deprecated and will be removed from pandas in a future version. Use
    9422 pandas.concat instead. 
    9423 self.df = self.df.append(df_add, ignore_index=True) 
    9424 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9425 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9426 is deprecated and will be removed from pandas in a future version. Use
    9427 pandas.concat instead. 
    9428 self.df = self.df.append(df_add, ignore_index=True) 
    9429 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9430 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9431 is deprecated and will be removed from pandas in a future version. Use
    9432 pandas.concat instead. 
    9433 self.df = self.df.append(df_add, ignore_index=True) 
    9434 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9435 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9436 is deprecated and will be removed from pandas in a future version. Use
    9437 pandas.concat instead. 
    9438 self.df = self.df.append(df_add, ignore_index=True) 
    9439 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9440 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9441 is deprecated and will be removed from pandas in a future version. Use
    9442 pandas.concat instead. 
    9443 self.df = self.df.append(df_add, ignore_index=True) 
    9444 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9445 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9446 is deprecated and will be removed from pandas in a future version. Use
    9447 pandas.concat instead. 
    9448 self.df = self.df.append(df_add, ignore_index=True) 
    9449 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9450 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9451 is deprecated and will be removed from pandas in a future version. Use
    9452 pandas.concat instead. 
    9453 self.df = self.df.append(df_add, ignore_index=True) 
    9454 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9455 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9456 is deprecated and will be removed from pandas in a future version. Use
    9457 pandas.concat instead. 
    9458 self.df = self.df.append(df_add, ignore_index=True) 
    9459 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9460 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9461 is deprecated and will be removed from pandas in a future version. Use
    9462 pandas.concat instead. 
    9463 self.df = self.df.append(df_add, ignore_index=True) 
    9464 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9465 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9466 is deprecated and will be removed from pandas in a future version. Use
    9467 pandas.concat instead. 
    9468 self.df = self.df.append(df_add, ignore_index=True) 
    9469 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9470 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9471 is deprecated and will be removed from pandas in a future version. Use
    9472 pandas.concat instead. 
    9473 self.df = self.df.append(df_add, ignore_index=True) 
    9474 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9475 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9476 is deprecated and will be removed from pandas in a future version. Use
    9477 pandas.concat instead. 
    9478 self.df = self.df.append(df_add, ignore_index=True) 
    9479 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9480 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9481 is deprecated and will be removed from pandas in a future version. Use
    9482 pandas.concat instead. 
    9483 self.df = self.df.append(df_add, ignore_index=True) 
    9484 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9485 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9486 is deprecated and will be removed from pandas in a future version. Use
    9487 pandas.concat instead. 
    9488 self.df = self.df.append(df_add, ignore_index=True) 
    9489 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9490 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9491 is deprecated and will be removed from pandas in a future version. Use
    9492 pandas.concat instead. 
    9493 self.df = self.df.append(df_add, ignore_index=True) 
    9494 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9495 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9496 is deprecated and will be removed from pandas in a future version. Use
    9497 pandas.concat instead. 
    9498 self.df = self.df.append(df_add, ignore_index=True) 
    9499 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9500 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9501 is deprecated and will be removed from pandas in a future version. Use
    9502 pandas.concat instead. 
    9503 self.df = self.df.append(df_add, ignore_index=True) 
    9504 Unique peptide pairs with pseudobonds: 29 
    9505 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9506 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9507 is deprecated and will be removed from pandas in a future version. Use
    9508 pandas.concat instead. 
    9509 self.df = self.df.append(df_add, ignore_index=True) 
    9510 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9511 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9512 is deprecated and will be removed from pandas in a future version. Use
    9513 pandas.concat instead. 
    9514 self.df = self.df.append(df_add, ignore_index=True) 
    9515 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9516 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9517 is deprecated and will be removed from pandas in a future version. Use
    9518 pandas.concat instead. 
    9519 self.df = self.df.append(df_add, ignore_index=True) 
    9520 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9521 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9522 is deprecated and will be removed from pandas in a future version. Use
    9523 pandas.concat instead. 
    9524 self.df = self.df.append(df_add, ignore_index=True) 
    9525 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9526 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9527 is deprecated and will be removed from pandas in a future version. Use
    9528 pandas.concat instead. 
    9529 self.df = self.df.append(df_add, ignore_index=True) 
    9530 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9531 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9532 is deprecated and will be removed from pandas in a future version. Use
    9533 pandas.concat instead. 
    9534 self.df = self.df.append(df_add, ignore_index=True) 
    9535 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9536 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9537 is deprecated and will be removed from pandas in a future version. Use
    9538 pandas.concat instead. 
    9539 self.df = self.df.append(df_add, ignore_index=True) 
    9540 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9541 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9542 is deprecated and will be removed from pandas in a future version. Use
    9543 pandas.concat instead. 
    9544 self.df = self.df.append(df_add, ignore_index=True) 
    9545 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9546 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9547 is deprecated and will be removed from pandas in a future version. Use
    9548 pandas.concat instead. 
    9549 self.df = self.df.append(df_add, ignore_index=True) 
    9550 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9551 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9552 is deprecated and will be removed from pandas in a future version. Use
    9553 pandas.concat instead. 
    9554 self.df = self.df.append(df_add, ignore_index=True) 
    9555 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9556 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9557 is deprecated and will be removed from pandas in a future version. Use
    9558 pandas.concat instead. 
    9559 self.df = self.df.append(df_add, ignore_index=True) 
    9560 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9561 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9562 is deprecated and will be removed from pandas in a future version. Use
    9563 pandas.concat instead. 
    9564 self.df = self.df.append(df_add, ignore_index=True) 
    9565 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9566 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9567 is deprecated and will be removed from pandas in a future version. Use
    9568 pandas.concat instead. 
    9569 self.df = self.df.append(df_add, ignore_index=True) 
    9570 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9571 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9572 is deprecated and will be removed from pandas in a future version. Use
    9573 pandas.concat instead. 
    9574 self.df = self.df.append(df_add, ignore_index=True) 
    9575 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9576 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9577 is deprecated and will be removed from pandas in a future version. Use
    9578 pandas.concat instead. 
    9579 self.df = self.df.append(df_add, ignore_index=True) 
    9580 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9581 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9582 is deprecated and will be removed from pandas in a future version. Use
    9583 pandas.concat instead. 
    9584 self.df = self.df.append(df_add, ignore_index=True) 
    9585 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9586 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9587 is deprecated and will be removed from pandas in a future version. Use
    9588 pandas.concat instead. 
    9589 self.df = self.df.append(df_add, ignore_index=True) 
    9590 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9591 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9592 is deprecated and will be removed from pandas in a future version. Use
    9593 pandas.concat instead. 
    9594 self.df = self.df.append(df_add, ignore_index=True) 
    9595 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9596 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9597 is deprecated and will be removed from pandas in a future version. Use
    9598 pandas.concat instead. 
    9599 self.df = self.df.append(df_add, ignore_index=True) 
    9600 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9601 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9602 is deprecated and will be removed from pandas in a future version. Use
    9603 pandas.concat instead. 
    9604 self.df = self.df.append(df_add, ignore_index=True) 
    9605 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9606 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9607 is deprecated and will be removed from pandas in a future version. Use
    9608 pandas.concat instead. 
    9609 self.df = self.df.append(df_add, ignore_index=True) 
    9610 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9611 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9612 is deprecated and will be removed from pandas in a future version. Use
    9613 pandas.concat instead. 
    9614 self.df = self.df.append(df_add, ignore_index=True) 
    9615 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9616 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9617 is deprecated and will be removed from pandas in a future version. Use
    9618 pandas.concat instead. 
    9619 self.df = self.df.append(df_add, ignore_index=True) 
    9620 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9621 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9622 is deprecated and will be removed from pandas in a future version. Use
    9623 pandas.concat instead. 
    9624 self.df = self.df.append(df_add, ignore_index=True) 
    9625 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9626 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9627 is deprecated and will be removed from pandas in a future version. Use
    9628 pandas.concat instead. 
    9629 self.df = self.df.append(df_add, ignore_index=True) 
    9630 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9631 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9632 is deprecated and will be removed from pandas in a future version. Use
    9633 pandas.concat instead. 
    9634 self.df = self.df.append(df_add, ignore_index=True) 
    9635 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9636 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9637 is deprecated and will be removed from pandas in a future version. Use
    9638 pandas.concat instead. 
    9639 self.df = self.df.append(df_add, ignore_index=True) 
    9640 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9641 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9642 is deprecated and will be removed from pandas in a future version. Use
    9643 pandas.concat instead. 
    9644 self.df = self.df.append(df_add, ignore_index=True) 
    9645 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9646 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9647 is deprecated and will be removed from pandas in a future version. Use
    9648 pandas.concat instead. 
    9649 self.df = self.df.append(df_add, ignore_index=True) 
    9650 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9651 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9652 is deprecated and will be removed from pandas in a future version. Use
    9653 pandas.concat instead. 
    9654 self.df = self.df.append(df_add, ignore_index=True) 
    9655 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9656 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9657 is deprecated and will be removed from pandas in a future version. Use
    9658 pandas.concat instead. 
    9659 self.df = self.df.append(df_add, ignore_index=True) 
    9660 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9661 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9662 is deprecated and will be removed from pandas in a future version. Use
    9663 pandas.concat instead. 
    9664 self.df = self.df.append(df_add, ignore_index=True) 
    9665 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9666 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9667 is deprecated and will be removed from pandas in a future version. Use
    9668 pandas.concat instead. 
    9669 self.df = self.df.append(df_add, ignore_index=True) 
    9670 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9671 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9672 is deprecated and will be removed from pandas in a future version. Use
    9673 pandas.concat instead. 
    9674 self.df = self.df.append(df_add, ignore_index=True) 
    9675 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9676 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9677 is deprecated and will be removed from pandas in a future version. Use
    9678 pandas.concat instead. 
    9679 self.df = self.df.append(df_add, ignore_index=True) 
    9680 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9681 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9682 is deprecated and will be removed from pandas in a future version. Use
    9683 pandas.concat instead. 
    9684 self.df = self.df.append(df_add, ignore_index=True) 
    9685 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9686 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9687 is deprecated and will be removed from pandas in a future version. Use
    9688 pandas.concat instead. 
    9689 self.df = self.df.append(df_add, ignore_index=True) 
    9690 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9691 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9692 is deprecated and will be removed from pandas in a future version. Use
    9693 pandas.concat instead. 
    9694 self.df = self.df.append(df_add, ignore_index=True) 
    9695 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9696 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9697 is deprecated and will be removed from pandas in a future version. Use
    9698 pandas.concat instead. 
    9699 self.df = self.df.append(df_add, ignore_index=True) 
    9700 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9701 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9702 is deprecated and will be removed from pandas in a future version. Use
    9703 pandas.concat instead. 
    9704 self.df = self.df.append(df_add, ignore_index=True) 
    9705 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9706 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9707 is deprecated and will be removed from pandas in a future version. Use
    9708 pandas.concat instead. 
    9709 self.df = self.df.append(df_add, ignore_index=True) 
    9710 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9711 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9712 is deprecated and will be removed from pandas in a future version. Use
    9713 pandas.concat instead. 
    9714 self.df = self.df.append(df_add, ignore_index=True) 
    9715 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9716 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9717 is deprecated and will be removed from pandas in a future version. Use
    9718 pandas.concat instead. 
    9719 self.df = self.df.append(df_add, ignore_index=True) 
    9720 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9721 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9722 is deprecated and will be removed from pandas in a future version. Use
    9723 pandas.concat instead. 
    9724 self.df = self.df.append(df_add, ignore_index=True) 
    9725 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9726 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9727 is deprecated and will be removed from pandas in a future version. Use
    9728 pandas.concat instead. 
    9729 self.df = self.df.append(df_add, ignore_index=True) 
    9730 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9731 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9732 is deprecated and will be removed from pandas in a future version. Use
    9733 pandas.concat instead. 
    9734 self.df = self.df.append(df_add, ignore_index=True) 
    9735 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9736 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9737 is deprecated and will be removed from pandas in a future version. Use
    9738 pandas.concat instead. 
    9739 self.df = self.df.append(df_add, ignore_index=True) 
    9740 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9741 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9742 is deprecated and will be removed from pandas in a future version. Use
    9743 pandas.concat instead. 
    9744 self.df = self.df.append(df_add, ignore_index=True) 
    9745 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9746 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9747 is deprecated and will be removed from pandas in a future version. Use
    9748 pandas.concat instead. 
    9749 self.df = self.df.append(df_add, ignore_index=True) 
    9750 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9751 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9752 is deprecated and will be removed from pandas in a future version. Use
    9753 pandas.concat instead. 
    9754 self.df = self.df.append(df_add, ignore_index=True) 
    9755 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9756 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9757 is deprecated and will be removed from pandas in a future version. Use
    9758 pandas.concat instead. 
    9759 self.df = self.df.append(df_add, ignore_index=True) 
    9760 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9761 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9762 is deprecated and will be removed from pandas in a future version. Use
    9763 pandas.concat instead. 
    9764 self.df = self.df.append(df_add, ignore_index=True) 
    9765 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9766 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9767 is deprecated and will be removed from pandas in a future version. Use
    9768 pandas.concat instead. 
    9769 self.df = self.df.append(df_add, ignore_index=True) 
    9770 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9771 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9772 is deprecated and will be removed from pandas in a future version. Use
    9773 pandas.concat instead. 
    9774 self.df = self.df.append(df_add, ignore_index=True) 
    9775 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9776 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9777 is deprecated and will be removed from pandas in a future version. Use
    9778 pandas.concat instead. 
    9779 self.df = self.df.append(df_add, ignore_index=True) 
    9780 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9781 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9782 is deprecated and will be removed from pandas in a future version. Use
    9783 pandas.concat instead. 
    9784 self.df = self.df.append(df_add, ignore_index=True) 
    9785 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9786 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9787 is deprecated and will be removed from pandas in a future version. Use
    9788 pandas.concat instead. 
    9789 self.df = self.df.append(df_add, ignore_index=True) 
    9790 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9791 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9792 is deprecated and will be removed from pandas in a future version. Use
    9793 pandas.concat instead. 
    9794 self.df = self.df.append(df_add, ignore_index=True) 
    9795 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9796 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9797 is deprecated and will be removed from pandas in a future version. Use
    9798 pandas.concat instead. 
    9799 self.df = self.df.append(df_add, ignore_index=True) 
    9800 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9801 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9802 is deprecated and will be removed from pandas in a future version. Use
    9803 pandas.concat instead. 
    9804 self.df = self.df.append(df_add, ignore_index=True) 
    9805 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9806 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9807 is deprecated and will be removed from pandas in a future version. Use
    9808 pandas.concat instead. 
    9809 self.df = self.df.append(df_add, ignore_index=True) 
    9810 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9811 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9812 is deprecated and will be removed from pandas in a future version. Use
    9813 pandas.concat instead. 
    9814 self.df = self.df.append(df_add, ignore_index=True) 
    9815 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9816 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9817 is deprecated and will be removed from pandas in a future version. Use
    9818 pandas.concat instead. 
    9819 self.df = self.df.append(df_add, ignore_index=True) 
    9820 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9821 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9822 is deprecated and will be removed from pandas in a future version. Use
    9823 pandas.concat instead. 
    9824 self.df = self.df.append(df_add, ignore_index=True) 
    9825 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9826 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9827 is deprecated and will be removed from pandas in a future version. Use
    9828 pandas.concat instead. 
    9829 self.df = self.df.append(df_add, ignore_index=True) 
    9830 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9831 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9832 is deprecated and will be removed from pandas in a future version. Use
    9833 pandas.concat instead. 
    9834 self.df = self.df.append(df_add, ignore_index=True) 
    9835 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9836 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9837 is deprecated and will be removed from pandas in a future version. Use
    9838 pandas.concat instead. 
    9839 self.df = self.df.append(df_add, ignore_index=True) 
    9840 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9841 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9842 is deprecated and will be removed from pandas in a future version. Use
    9843 pandas.concat instead. 
    9844 self.df = self.df.append(df_add, ignore_index=True) 
    9845 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9846 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9847 is deprecated and will be removed from pandas in a future version. Use
    9848 pandas.concat instead. 
    9849 self.df = self.df.append(df_add, ignore_index=True) 
    9850 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9851 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9852 is deprecated and will be removed from pandas in a future version. Use
    9853 pandas.concat instead. 
    9854 self.df = self.df.append(df_add, ignore_index=True) 
    9855 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9856 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9857 is deprecated and will be removed from pandas in a future version. Use
    9858 pandas.concat instead. 
    9859 self.df = self.df.append(df_add, ignore_index=True) 
    9860 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9861 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9862 is deprecated and will be removed from pandas in a future version. Use
    9863 pandas.concat instead. 
    9864 self.df = self.df.append(df_add, ignore_index=True) 
    9865 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9866 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9867 is deprecated and will be removed from pandas in a future version. Use
    9868 pandas.concat instead. 
    9869 self.df = self.df.append(df_add, ignore_index=True) 
    9870 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9871 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9872 is deprecated and will be removed from pandas in a future version. Use
    9873 pandas.concat instead. 
    9874 self.df = self.df.append(df_add, ignore_index=True) 
    9875 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9876 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9877 is deprecated and will be removed from pandas in a future version. Use
    9878 pandas.concat instead. 
    9879 self.df = self.df.append(df_add, ignore_index=True) 
    9880 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9881 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9882 is deprecated and will be removed from pandas in a future version. Use
    9883 pandas.concat instead. 
    9884 self.df = self.df.append(df_add, ignore_index=True) 
    9885 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    9886 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate3-combined_1,2,4.pb 
    9887 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    9888 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate3-combined_1,2,4.tsv 
    9889  
    9890 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    9891 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate1-combined.xlsx 
    9892 Unique peptide pairs: 117 out of 117 
    9893 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9894 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9895 is deprecated and will be removed from pandas in a future version. Use
    9896 pandas.concat instead. 
    9897 self.df = self.df.append(df_add, ignore_index=True) 
    9898 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9899 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9900 is deprecated and will be removed from pandas in a future version. Use
    9901 pandas.concat instead. 
    9902 self.df = self.df.append(df_add, ignore_index=True) 
    9903 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9904 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9905 is deprecated and will be removed from pandas in a future version. Use
    9906 pandas.concat instead. 
    9907 self.df = self.df.append(df_add, ignore_index=True) 
    9908 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9909 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9910 is deprecated and will be removed from pandas in a future version. Use
    9911 pandas.concat instead. 
    9912 self.df = self.df.append(df_add, ignore_index=True) 
    9913 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9914 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9915 is deprecated and will be removed from pandas in a future version. Use
    9916 pandas.concat instead. 
    9917 self.df = self.df.append(df_add, ignore_index=True) 
    9918 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9919 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9920 is deprecated and will be removed from pandas in a future version. Use
    9921 pandas.concat instead. 
    9922 self.df = self.df.append(df_add, ignore_index=True) 
    9923 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9924 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9925 is deprecated and will be removed from pandas in a future version. Use
    9926 pandas.concat instead. 
    9927 self.df = self.df.append(df_add, ignore_index=True) 
    9928 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9929 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9930 is deprecated and will be removed from pandas in a future version. Use
    9931 pandas.concat instead. 
    9932 self.df = self.df.append(df_add, ignore_index=True) 
    9933 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9934 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9935 is deprecated and will be removed from pandas in a future version. Use
    9936 pandas.concat instead. 
    9937 self.df = self.df.append(df_add, ignore_index=True) 
    9938 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9939 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9940 is deprecated and will be removed from pandas in a future version. Use
    9941 pandas.concat instead. 
    9942 self.df = self.df.append(df_add, ignore_index=True) 
    9943 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9944 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9945 is deprecated and will be removed from pandas in a future version. Use
    9946 pandas.concat instead. 
    9947 self.df = self.df.append(df_add, ignore_index=True) 
    9948 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9949 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9950 is deprecated and will be removed from pandas in a future version. Use
    9951 pandas.concat instead. 
    9952 self.df = self.df.append(df_add, ignore_index=True) 
    9953 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9954 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9955 is deprecated and will be removed from pandas in a future version. Use
    9956 pandas.concat instead. 
    9957 self.df = self.df.append(df_add, ignore_index=True) 
    9958 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9959 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9960 is deprecated and will be removed from pandas in a future version. Use
    9961 pandas.concat instead. 
    9962 self.df = self.df.append(df_add, ignore_index=True) 
    9963 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9964 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9965 is deprecated and will be removed from pandas in a future version. Use
    9966 pandas.concat instead. 
    9967 self.df = self.df.append(df_add, ignore_index=True) 
    9968 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9969 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9970 is deprecated and will be removed from pandas in a future version. Use
    9971 pandas.concat instead. 
    9972 self.df = self.df.append(df_add, ignore_index=True) 
    9973 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9974 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9975 is deprecated and will be removed from pandas in a future version. Use
    9976 pandas.concat instead. 
    9977 self.df = self.df.append(df_add, ignore_index=True) 
    9978 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9979 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9980 is deprecated and will be removed from pandas in a future version. Use
    9981 pandas.concat instead. 
    9982 self.df = self.df.append(df_add, ignore_index=True) 
    9983 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9984 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9985 is deprecated and will be removed from pandas in a future version. Use
    9986 pandas.concat instead. 
    9987 self.df = self.df.append(df_add, ignore_index=True) 
    9988 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9989 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9990 is deprecated and will be removed from pandas in a future version. Use
    9991 pandas.concat instead. 
    9992 self.df = self.df.append(df_add, ignore_index=True) 
    9993 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9994 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    9995 is deprecated and will be removed from pandas in a future version. Use
    9996 pandas.concat instead. 
    9997 self.df = self.df.append(df_add, ignore_index=True) 
    9998 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    9999 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10000 is deprecated and will be removed from pandas in a future version. Use
    10001 pandas.concat instead. 
    10002 self.df = self.df.append(df_add, ignore_index=True) 
    10003 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10004 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10005 is deprecated and will be removed from pandas in a future version. Use
    10006 pandas.concat instead. 
    10007 self.df = self.df.append(df_add, ignore_index=True) 
    10008 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10009 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10010 is deprecated and will be removed from pandas in a future version. Use
    10011 pandas.concat instead. 
    10012 self.df = self.df.append(df_add, ignore_index=True) 
    10013 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10014 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10015 is deprecated and will be removed from pandas in a future version. Use
    10016 pandas.concat instead. 
    10017 self.df = self.df.append(df_add, ignore_index=True) 
    10018 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10019 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10020 is deprecated and will be removed from pandas in a future version. Use
    10021 pandas.concat instead. 
    10022 self.df = self.df.append(df_add, ignore_index=True) 
    10023 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10024 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10025 is deprecated and will be removed from pandas in a future version. Use
    10026 pandas.concat instead. 
    10027 self.df = self.df.append(df_add, ignore_index=True) 
    10028 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10029 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10030 is deprecated and will be removed from pandas in a future version. Use
    10031 pandas.concat instead. 
    10032 self.df = self.df.append(df_add, ignore_index=True) 
    10033 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10034 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10035 is deprecated and will be removed from pandas in a future version. Use
    10036 pandas.concat instead. 
    10037 self.df = self.df.append(df_add, ignore_index=True) 
    10038 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10039 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10040 is deprecated and will be removed from pandas in a future version. Use
    10041 pandas.concat instead. 
    10042 self.df = self.df.append(df_add, ignore_index=True) 
    10043 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10044 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10045 is deprecated and will be removed from pandas in a future version. Use
    10046 pandas.concat instead. 
    10047 self.df = self.df.append(df_add, ignore_index=True) 
    10048 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10049 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10050 is deprecated and will be removed from pandas in a future version. Use
    10051 pandas.concat instead. 
    10052 self.df = self.df.append(df_add, ignore_index=True) 
    10053 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10054 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10055 is deprecated and will be removed from pandas in a future version. Use
    10056 pandas.concat instead. 
    10057 self.df = self.df.append(df_add, ignore_index=True) 
    10058 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10059 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10060 is deprecated and will be removed from pandas in a future version. Use
    10061 pandas.concat instead. 
    10062 self.df = self.df.append(df_add, ignore_index=True) 
    10063 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10064 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10065 is deprecated and will be removed from pandas in a future version. Use
    10066 pandas.concat instead. 
    10067 self.df = self.df.append(df_add, ignore_index=True) 
    10068 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10069 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10070 is deprecated and will be removed from pandas in a future version. Use
    10071 pandas.concat instead. 
    10072 self.df = self.df.append(df_add, ignore_index=True) 
    10073 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10074 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10075 is deprecated and will be removed from pandas in a future version. Use
    10076 pandas.concat instead. 
    10077 self.df = self.df.append(df_add, ignore_index=True) 
    10078 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10079 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10080 is deprecated and will be removed from pandas in a future version. Use
    10081 pandas.concat instead. 
    10082 self.df = self.df.append(df_add, ignore_index=True) 
    10083 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10084 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10085 is deprecated and will be removed from pandas in a future version. Use
    10086 pandas.concat instead. 
    10087 self.df = self.df.append(df_add, ignore_index=True) 
    10088 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10089 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10090 is deprecated and will be removed from pandas in a future version. Use
    10091 pandas.concat instead. 
    10092 self.df = self.df.append(df_add, ignore_index=True) 
    10093 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10094 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10095 is deprecated and will be removed from pandas in a future version. Use
    10096 pandas.concat instead. 
    10097 self.df = self.df.append(df_add, ignore_index=True) 
    10098 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10099 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10100 is deprecated and will be removed from pandas in a future version. Use
    10101 pandas.concat instead. 
    10102 self.df = self.df.append(df_add, ignore_index=True) 
    10103 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10104 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10105 is deprecated and will be removed from pandas in a future version. Use
    10106 pandas.concat instead. 
    10107 self.df = self.df.append(df_add, ignore_index=True) 
    10108 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10109 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10110 is deprecated and will be removed from pandas in a future version. Use
    10111 pandas.concat instead. 
    10112 self.df = self.df.append(df_add, ignore_index=True) 
    10113 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10114 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10115 is deprecated and will be removed from pandas in a future version. Use
    10116 pandas.concat instead. 
    10117 self.df = self.df.append(df_add, ignore_index=True) 
    10118 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10119 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10120 is deprecated and will be removed from pandas in a future version. Use
    10121 pandas.concat instead. 
    10122 self.df = self.df.append(df_add, ignore_index=True) 
    10123 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10124 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10125 is deprecated and will be removed from pandas in a future version. Use
    10126 pandas.concat instead. 
    10127 self.df = self.df.append(df_add, ignore_index=True) 
    10128 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10129 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10130 is deprecated and will be removed from pandas in a future version. Use
    10131 pandas.concat instead. 
    10132 self.df = self.df.append(df_add, ignore_index=True) 
    10133 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10134 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10135 is deprecated and will be removed from pandas in a future version. Use
    10136 pandas.concat instead. 
    10137 self.df = self.df.append(df_add, ignore_index=True) 
    10138 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10139 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10140 is deprecated and will be removed from pandas in a future version. Use
    10141 pandas.concat instead. 
    10142 self.df = self.df.append(df_add, ignore_index=True) 
    10143 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10144 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10145 is deprecated and will be removed from pandas in a future version. Use
    10146 pandas.concat instead. 
    10147 self.df = self.df.append(df_add, ignore_index=True) 
    10148 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10149 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10150 is deprecated and will be removed from pandas in a future version. Use
    10151 pandas.concat instead. 
    10152 self.df = self.df.append(df_add, ignore_index=True) 
    10153 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10154 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10155 is deprecated and will be removed from pandas in a future version. Use
    10156 pandas.concat instead. 
    10157 self.df = self.df.append(df_add, ignore_index=True) 
    10158 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10159 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10160 is deprecated and will be removed from pandas in a future version. Use
    10161 pandas.concat instead. 
    10162 self.df = self.df.append(df_add, ignore_index=True) 
    10163 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10164 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10165 is deprecated and will be removed from pandas in a future version. Use
    10166 pandas.concat instead. 
    10167 self.df = self.df.append(df_add, ignore_index=True) 
    10168 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10169 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10170 is deprecated and will be removed from pandas in a future version. Use
    10171 pandas.concat instead. 
    10172 self.df = self.df.append(df_add, ignore_index=True) 
    10173 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10174 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10175 is deprecated and will be removed from pandas in a future version. Use
    10176 pandas.concat instead. 
    10177 self.df = self.df.append(df_add, ignore_index=True) 
    10178 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10179 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10180 is deprecated and will be removed from pandas in a future version. Use
    10181 pandas.concat instead. 
    10182 self.df = self.df.append(df_add, ignore_index=True) 
    10183 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10184 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10185 is deprecated and will be removed from pandas in a future version. Use
    10186 pandas.concat instead. 
    10187 self.df = self.df.append(df_add, ignore_index=True) 
    10188 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10189 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10190 is deprecated and will be removed from pandas in a future version. Use
    10191 pandas.concat instead. 
    10192 self.df = self.df.append(df_add, ignore_index=True) 
    10193 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10194 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10195 is deprecated and will be removed from pandas in a future version. Use
    10196 pandas.concat instead. 
    10197 self.df = self.df.append(df_add, ignore_index=True) 
    10198 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10199 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10200 is deprecated and will be removed from pandas in a future version. Use
    10201 pandas.concat instead. 
    10202 self.df = self.df.append(df_add, ignore_index=True) 
    10203 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10204 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10205 is deprecated and will be removed from pandas in a future version. Use
    10206 pandas.concat instead. 
    10207 self.df = self.df.append(df_add, ignore_index=True) 
    10208 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10209 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10210 is deprecated and will be removed from pandas in a future version. Use
    10211 pandas.concat instead. 
    10212 self.df = self.df.append(df_add, ignore_index=True) 
    10213 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10214 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10215 is deprecated and will be removed from pandas in a future version. Use
    10216 pandas.concat instead. 
    10217 self.df = self.df.append(df_add, ignore_index=True) 
    10218 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10219 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10220 is deprecated and will be removed from pandas in a future version. Use
    10221 pandas.concat instead. 
    10222 self.df = self.df.append(df_add, ignore_index=True) 
    10223 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10224 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10225 is deprecated and will be removed from pandas in a future version. Use
    10226 pandas.concat instead. 
    10227 self.df = self.df.append(df_add, ignore_index=True) 
    10228 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10229 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10230 is deprecated and will be removed from pandas in a future version. Use
    10231 pandas.concat instead. 
    10232 self.df = self.df.append(df_add, ignore_index=True) 
    10233 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10234 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10235 is deprecated and will be removed from pandas in a future version. Use
    10236 pandas.concat instead. 
    10237 self.df = self.df.append(df_add, ignore_index=True) 
    10238 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10239 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10240 is deprecated and will be removed from pandas in a future version. Use
    10241 pandas.concat instead. 
    10242 self.df = self.df.append(df_add, ignore_index=True) 
    10243 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10244 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10245 is deprecated and will be removed from pandas in a future version. Use
    10246 pandas.concat instead. 
    10247 self.df = self.df.append(df_add, ignore_index=True) 
    10248 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10249 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10250 is deprecated and will be removed from pandas in a future version. Use
    10251 pandas.concat instead. 
    10252 self.df = self.df.append(df_add, ignore_index=True) 
    10253 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10254 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10255 is deprecated and will be removed from pandas in a future version. Use
    10256 pandas.concat instead. 
    10257 self.df = self.df.append(df_add, ignore_index=True) 
    10258 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10259 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10260 is deprecated and will be removed from pandas in a future version. Use
    10261 pandas.concat instead. 
    10262 self.df = self.df.append(df_add, ignore_index=True) 
    10263 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10264 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10265 is deprecated and will be removed from pandas in a future version. Use
    10266 pandas.concat instead. 
    10267 self.df = self.df.append(df_add, ignore_index=True) 
    10268 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10269 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10270 is deprecated and will be removed from pandas in a future version. Use
    10271 pandas.concat instead. 
    10272 self.df = self.df.append(df_add, ignore_index=True) 
    10273 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10274 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10275 is deprecated and will be removed from pandas in a future version. Use
    10276 pandas.concat instead. 
    10277 self.df = self.df.append(df_add, ignore_index=True) 
    10278 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10279 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10280 is deprecated and will be removed from pandas in a future version. Use
    10281 pandas.concat instead. 
    10282 self.df = self.df.append(df_add, ignore_index=True) 
    10283 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10284 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10285 is deprecated and will be removed from pandas in a future version. Use
    10286 pandas.concat instead. 
    10287 self.df = self.df.append(df_add, ignore_index=True) 
    10288 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10289 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10290 is deprecated and will be removed from pandas in a future version. Use
    10291 pandas.concat instead. 
    10292 self.df = self.df.append(df_add, ignore_index=True) 
    10293 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10294 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10295 is deprecated and will be removed from pandas in a future version. Use
    10296 pandas.concat instead. 
    10297 self.df = self.df.append(df_add, ignore_index=True) 
    10298 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10299 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10300 is deprecated and will be removed from pandas in a future version. Use
    10301 pandas.concat instead. 
    10302 self.df = self.df.append(df_add, ignore_index=True) 
    10303 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10304 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10305 is deprecated and will be removed from pandas in a future version. Use
    10306 pandas.concat instead. 
    10307 self.df = self.df.append(df_add, ignore_index=True) 
    10308 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10309 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10310 is deprecated and will be removed from pandas in a future version. Use
    10311 pandas.concat instead. 
    10312 self.df = self.df.append(df_add, ignore_index=True) 
    10313 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10314 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10315 is deprecated and will be removed from pandas in a future version. Use
    10316 pandas.concat instead. 
    10317 self.df = self.df.append(df_add, ignore_index=True) 
    10318 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10319 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10320 is deprecated and will be removed from pandas in a future version. Use
    10321 pandas.concat instead. 
    10322 self.df = self.df.append(df_add, ignore_index=True) 
    10323 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10324 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10325 is deprecated and will be removed from pandas in a future version. Use
    10326 pandas.concat instead. 
    10327 self.df = self.df.append(df_add, ignore_index=True) 
    10328 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10329 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10330 is deprecated and will be removed from pandas in a future version. Use
    10331 pandas.concat instead. 
    10332 self.df = self.df.append(df_add, ignore_index=True) 
    10333 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10334 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10335 is deprecated and will be removed from pandas in a future version. Use
    10336 pandas.concat instead. 
    10337 self.df = self.df.append(df_add, ignore_index=True) 
    10338 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10339 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10340 is deprecated and will be removed from pandas in a future version. Use
    10341 pandas.concat instead. 
    10342 self.df = self.df.append(df_add, ignore_index=True) 
    10343 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10344 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10345 is deprecated and will be removed from pandas in a future version. Use
    10346 pandas.concat instead. 
    10347 self.df = self.df.append(df_add, ignore_index=True) 
    10348 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10349 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10350 is deprecated and will be removed from pandas in a future version. Use
    10351 pandas.concat instead. 
    10352 self.df = self.df.append(df_add, ignore_index=True) 
    10353 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10354 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10355 is deprecated and will be removed from pandas in a future version. Use
    10356 pandas.concat instead. 
    10357 self.df = self.df.append(df_add, ignore_index=True) 
    10358 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10359 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10360 is deprecated and will be removed from pandas in a future version. Use
    10361 pandas.concat instead. 
    10362 self.df = self.df.append(df_add, ignore_index=True) 
    10363 Unique peptide pairs with pseudobonds: 23 
    10364 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10365 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10366 is deprecated and will be removed from pandas in a future version. Use
    10367 pandas.concat instead. 
    10368 self.df = self.df.append(df_add, ignore_index=True) 
    10369 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10370 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10371 is deprecated and will be removed from pandas in a future version. Use
    10372 pandas.concat instead. 
    10373 self.df = self.df.append(df_add, ignore_index=True) 
    10374 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10375 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10376 is deprecated and will be removed from pandas in a future version. Use
    10377 pandas.concat instead. 
    10378 self.df = self.df.append(df_add, ignore_index=True) 
    10379 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10380 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10381 is deprecated and will be removed from pandas in a future version. Use
    10382 pandas.concat instead. 
    10383 self.df = self.df.append(df_add, ignore_index=True) 
    10384 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10385 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10386 is deprecated and will be removed from pandas in a future version. Use
    10387 pandas.concat instead. 
    10388 self.df = self.df.append(df_add, ignore_index=True) 
    10389 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10390 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10391 is deprecated and will be removed from pandas in a future version. Use
    10392 pandas.concat instead. 
    10393 self.df = self.df.append(df_add, ignore_index=True) 
    10394 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10395 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10396 is deprecated and will be removed from pandas in a future version. Use
    10397 pandas.concat instead. 
    10398 self.df = self.df.append(df_add, ignore_index=True) 
    10399 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10400 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10401 is deprecated and will be removed from pandas in a future version. Use
    10402 pandas.concat instead. 
    10403 self.df = self.df.append(df_add, ignore_index=True) 
    10404 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10405 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10406 is deprecated and will be removed from pandas in a future version. Use
    10407 pandas.concat instead. 
    10408 self.df = self.df.append(df_add, ignore_index=True) 
    10409 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10410 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10411 is deprecated and will be removed from pandas in a future version. Use
    10412 pandas.concat instead. 
    10413 self.df = self.df.append(df_add, ignore_index=True) 
    10414 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10415 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10416 is deprecated and will be removed from pandas in a future version. Use
    10417 pandas.concat instead. 
    10418 self.df = self.df.append(df_add, ignore_index=True) 
    10419 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10420 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10421 is deprecated and will be removed from pandas in a future version. Use
    10422 pandas.concat instead. 
    10423 self.df = self.df.append(df_add, ignore_index=True) 
    10424 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10425 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10426 is deprecated and will be removed from pandas in a future version. Use
    10427 pandas.concat instead. 
    10428 self.df = self.df.append(df_add, ignore_index=True) 
    10429 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10430 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10431 is deprecated and will be removed from pandas in a future version. Use
    10432 pandas.concat instead. 
    10433 self.df = self.df.append(df_add, ignore_index=True) 
    10434 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10435 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10436 is deprecated and will be removed from pandas in a future version. Use
    10437 pandas.concat instead. 
    10438 self.df = self.df.append(df_add, ignore_index=True) 
    10439 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10440 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10441 is deprecated and will be removed from pandas in a future version. Use
    10442 pandas.concat instead. 
    10443 self.df = self.df.append(df_add, ignore_index=True) 
    10444 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10445 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10446 is deprecated and will be removed from pandas in a future version. Use
    10447 pandas.concat instead. 
    10448 self.df = self.df.append(df_add, ignore_index=True) 
    10449 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10450 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10451 is deprecated and will be removed from pandas in a future version. Use
    10452 pandas.concat instead. 
    10453 self.df = self.df.append(df_add, ignore_index=True) 
    10454 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10455 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10456 is deprecated and will be removed from pandas in a future version. Use
    10457 pandas.concat instead. 
    10458 self.df = self.df.append(df_add, ignore_index=True) 
    10459 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10460 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10461 is deprecated and will be removed from pandas in a future version. Use
    10462 pandas.concat instead. 
    10463 self.df = self.df.append(df_add, ignore_index=True) 
    10464 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10465 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10466 is deprecated and will be removed from pandas in a future version. Use
    10467 pandas.concat instead. 
    10468 self.df = self.df.append(df_add, ignore_index=True) 
    10469 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10470 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10471 is deprecated and will be removed from pandas in a future version. Use
    10472 pandas.concat instead. 
    10473 self.df = self.df.append(df_add, ignore_index=True) 
    10474 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10475 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10476 is deprecated and will be removed from pandas in a future version. Use
    10477 pandas.concat instead. 
    10478 self.df = self.df.append(df_add, ignore_index=True) 
    10479 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10480 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10481 is deprecated and will be removed from pandas in a future version. Use
    10482 pandas.concat instead. 
    10483 self.df = self.df.append(df_add, ignore_index=True) 
    10484 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10485 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10486 is deprecated and will be removed from pandas in a future version. Use
    10487 pandas.concat instead. 
    10488 self.df = self.df.append(df_add, ignore_index=True) 
    10489 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10490 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10491 is deprecated and will be removed from pandas in a future version. Use
    10492 pandas.concat instead. 
    10493 self.df = self.df.append(df_add, ignore_index=True) 
    10494 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10495 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10496 is deprecated and will be removed from pandas in a future version. Use
    10497 pandas.concat instead. 
    10498 self.df = self.df.append(df_add, ignore_index=True) 
    10499 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10500 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10501 is deprecated and will be removed from pandas in a future version. Use
    10502 pandas.concat instead. 
    10503 self.df = self.df.append(df_add, ignore_index=True) 
    10504 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10505 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10506 is deprecated and will be removed from pandas in a future version. Use
    10507 pandas.concat instead. 
    10508 self.df = self.df.append(df_add, ignore_index=True) 
    10509 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10510 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10511 is deprecated and will be removed from pandas in a future version. Use
    10512 pandas.concat instead. 
    10513 self.df = self.df.append(df_add, ignore_index=True) 
    10514 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10515 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10516 is deprecated and will be removed from pandas in a future version. Use
    10517 pandas.concat instead. 
    10518 self.df = self.df.append(df_add, ignore_index=True) 
    10519 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10520 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10521 is deprecated and will be removed from pandas in a future version. Use
    10522 pandas.concat instead. 
    10523 self.df = self.df.append(df_add, ignore_index=True) 
    10524 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10525 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10526 is deprecated and will be removed from pandas in a future version. Use
    10527 pandas.concat instead. 
    10528 self.df = self.df.append(df_add, ignore_index=True) 
    10529 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10530 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10531 is deprecated and will be removed from pandas in a future version. Use
    10532 pandas.concat instead. 
    10533 self.df = self.df.append(df_add, ignore_index=True) 
    10534 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10535 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10536 is deprecated and will be removed from pandas in a future version. Use
    10537 pandas.concat instead. 
    10538 self.df = self.df.append(df_add, ignore_index=True) 
    10539 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10540 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10541 is deprecated and will be removed from pandas in a future version. Use
    10542 pandas.concat instead. 
    10543 self.df = self.df.append(df_add, ignore_index=True) 
    10544 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10545 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10546 is deprecated and will be removed from pandas in a future version. Use
    10547 pandas.concat instead. 
    10548 self.df = self.df.append(df_add, ignore_index=True) 
    10549 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10550 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10551 is deprecated and will be removed from pandas in a future version. Use
    10552 pandas.concat instead. 
    10553 self.df = self.df.append(df_add, ignore_index=True) 
    10554 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10555 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10556 is deprecated and will be removed from pandas in a future version. Use
    10557 pandas.concat instead. 
    10558 self.df = self.df.append(df_add, ignore_index=True) 
    10559 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10560 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10561 is deprecated and will be removed from pandas in a future version. Use
    10562 pandas.concat instead. 
    10563 self.df = self.df.append(df_add, ignore_index=True) 
    10564 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10565 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10566 is deprecated and will be removed from pandas in a future version. Use
    10567 pandas.concat instead. 
    10568 self.df = self.df.append(df_add, ignore_index=True) 
    10569 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10570 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10571 is deprecated and will be removed from pandas in a future version. Use
    10572 pandas.concat instead. 
    10573 self.df = self.df.append(df_add, ignore_index=True) 
    10574 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10575 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10576 is deprecated and will be removed from pandas in a future version. Use
    10577 pandas.concat instead. 
    10578 self.df = self.df.append(df_add, ignore_index=True) 
    10579 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10580 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10581 is deprecated and will be removed from pandas in a future version. Use
    10582 pandas.concat instead. 
    10583 self.df = self.df.append(df_add, ignore_index=True) 
    10584 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10585 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10586 is deprecated and will be removed from pandas in a future version. Use
    10587 pandas.concat instead. 
    10588 self.df = self.df.append(df_add, ignore_index=True) 
    10589 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10590 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10591 is deprecated and will be removed from pandas in a future version. Use
    10592 pandas.concat instead. 
    10593 self.df = self.df.append(df_add, ignore_index=True) 
    10594 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10595 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10596 is deprecated and will be removed from pandas in a future version. Use
    10597 pandas.concat instead. 
    10598 self.df = self.df.append(df_add, ignore_index=True) 
    10599 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10600 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10601 is deprecated and will be removed from pandas in a future version. Use
    10602 pandas.concat instead. 
    10603 self.df = self.df.append(df_add, ignore_index=True) 
    10604 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10605 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10606 is deprecated and will be removed from pandas in a future version. Use
    10607 pandas.concat instead. 
    10608 self.df = self.df.append(df_add, ignore_index=True) 
    10609 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10610 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10611 is deprecated and will be removed from pandas in a future version. Use
    10612 pandas.concat instead. 
    10613 self.df = self.df.append(df_add, ignore_index=True) 
    10614 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10615 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10616 is deprecated and will be removed from pandas in a future version. Use
    10617 pandas.concat instead. 
    10618 self.df = self.df.append(df_add, ignore_index=True) 
    10619 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10620 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10621 is deprecated and will be removed from pandas in a future version. Use
    10622 pandas.concat instead. 
    10623 self.df = self.df.append(df_add, ignore_index=True) 
    10624 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10625 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10626 is deprecated and will be removed from pandas in a future version. Use
    10627 pandas.concat instead. 
    10628 self.df = self.df.append(df_add, ignore_index=True) 
    10629 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10630 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10631 is deprecated and will be removed from pandas in a future version. Use
    10632 pandas.concat instead. 
    10633 self.df = self.df.append(df_add, ignore_index=True) 
    10634 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10635 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10636 is deprecated and will be removed from pandas in a future version. Use
    10637 pandas.concat instead. 
    10638 self.df = self.df.append(df_add, ignore_index=True) 
    10639 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10640 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10641 is deprecated and will be removed from pandas in a future version. Use
    10642 pandas.concat instead. 
    10643 self.df = self.df.append(df_add, ignore_index=True) 
    10644 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10645 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10646 is deprecated and will be removed from pandas in a future version. Use
    10647 pandas.concat instead. 
    10648 self.df = self.df.append(df_add, ignore_index=True) 
    10649 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10650 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10651 is deprecated and will be removed from pandas in a future version. Use
    10652 pandas.concat instead. 
    10653 self.df = self.df.append(df_add, ignore_index=True) 
    10654 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10655 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10656 is deprecated and will be removed from pandas in a future version. Use
    10657 pandas.concat instead. 
    10658 self.df = self.df.append(df_add, ignore_index=True) 
    10659 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10660 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10661 is deprecated and will be removed from pandas in a future version. Use
    10662 pandas.concat instead. 
    10663 self.df = self.df.append(df_add, ignore_index=True) 
    10664 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10665 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10666 is deprecated and will be removed from pandas in a future version. Use
    10667 pandas.concat instead. 
    10668 self.df = self.df.append(df_add, ignore_index=True) 
    10669 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10670 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10671 is deprecated and will be removed from pandas in a future version. Use
    10672 pandas.concat instead. 
    10673 self.df = self.df.append(df_add, ignore_index=True) 
    10674 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    10675 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate1-combined_1,2,4.pb 
    10676 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    10677 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate1-combined_1,2,4.tsv 
    10678  
    10679 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    10680 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate2-combined.xlsx 
    10681 Unique peptide pairs: 98 out of 98 
    10682 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10683 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10684 is deprecated and will be removed from pandas in a future version. Use
    10685 pandas.concat instead. 
    10686 self.df = self.df.append(df_add, ignore_index=True) 
    10687 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10688 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10689 is deprecated and will be removed from pandas in a future version. Use
    10690 pandas.concat instead. 
    10691 self.df = self.df.append(df_add, ignore_index=True) 
    10692 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10693 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10694 is deprecated and will be removed from pandas in a future version. Use
    10695 pandas.concat instead. 
    10696 self.df = self.df.append(df_add, ignore_index=True) 
    10697 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10698 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10699 is deprecated and will be removed from pandas in a future version. Use
    10700 pandas.concat instead. 
    10701 self.df = self.df.append(df_add, ignore_index=True) 
    10702 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10703 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10704 is deprecated and will be removed from pandas in a future version. Use
    10705 pandas.concat instead. 
    10706 self.df = self.df.append(df_add, ignore_index=True) 
    10707 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10708 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10709 is deprecated and will be removed from pandas in a future version. Use
    10710 pandas.concat instead. 
    10711 self.df = self.df.append(df_add, ignore_index=True) 
    10712 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10713 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10714 is deprecated and will be removed from pandas in a future version. Use
    10715 pandas.concat instead. 
    10716 self.df = self.df.append(df_add, ignore_index=True) 
    10717 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10718 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10719 is deprecated and will be removed from pandas in a future version. Use
    10720 pandas.concat instead. 
    10721 self.df = self.df.append(df_add, ignore_index=True) 
    10722 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10723 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10724 is deprecated and will be removed from pandas in a future version. Use
    10725 pandas.concat instead. 
    10726 self.df = self.df.append(df_add, ignore_index=True) 
    10727 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10728 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10729 is deprecated and will be removed from pandas in a future version. Use
    10730 pandas.concat instead. 
    10731 self.df = self.df.append(df_add, ignore_index=True) 
    10732 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10733 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10734 is deprecated and will be removed from pandas in a future version. Use
    10735 pandas.concat instead. 
    10736 self.df = self.df.append(df_add, ignore_index=True) 
    10737 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10738 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10739 is deprecated and will be removed from pandas in a future version. Use
    10740 pandas.concat instead. 
    10741 self.df = self.df.append(df_add, ignore_index=True) 
    10742 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10743 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10744 is deprecated and will be removed from pandas in a future version. Use
    10745 pandas.concat instead. 
    10746 self.df = self.df.append(df_add, ignore_index=True) 
    10747 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10748 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10749 is deprecated and will be removed from pandas in a future version. Use
    10750 pandas.concat instead. 
    10751 self.df = self.df.append(df_add, ignore_index=True) 
    10752 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10753 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10754 is deprecated and will be removed from pandas in a future version. Use
    10755 pandas.concat instead. 
    10756 self.df = self.df.append(df_add, ignore_index=True) 
    10757 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10758 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10759 is deprecated and will be removed from pandas in a future version. Use
    10760 pandas.concat instead. 
    10761 self.df = self.df.append(df_add, ignore_index=True) 
    10762 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10763 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10764 is deprecated and will be removed from pandas in a future version. Use
    10765 pandas.concat instead. 
    10766 self.df = self.df.append(df_add, ignore_index=True) 
    10767 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10768 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10769 is deprecated and will be removed from pandas in a future version. Use
    10770 pandas.concat instead. 
    10771 self.df = self.df.append(df_add, ignore_index=True) 
    10772 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10773 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10774 is deprecated and will be removed from pandas in a future version. Use
    10775 pandas.concat instead. 
    10776 self.df = self.df.append(df_add, ignore_index=True) 
    10777 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10778 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10779 is deprecated and will be removed from pandas in a future version. Use
    10780 pandas.concat instead. 
    10781 self.df = self.df.append(df_add, ignore_index=True) 
    10782 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10783 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10784 is deprecated and will be removed from pandas in a future version. Use
    10785 pandas.concat instead. 
    10786 self.df = self.df.append(df_add, ignore_index=True) 
    10787 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10788 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10789 is deprecated and will be removed from pandas in a future version. Use
    10790 pandas.concat instead. 
    10791 self.df = self.df.append(df_add, ignore_index=True) 
    10792 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10793 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10794 is deprecated and will be removed from pandas in a future version. Use
    10795 pandas.concat instead. 
    10796 self.df = self.df.append(df_add, ignore_index=True) 
    10797 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10798 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10799 is deprecated and will be removed from pandas in a future version. Use
    10800 pandas.concat instead. 
    10801 self.df = self.df.append(df_add, ignore_index=True) 
    10802 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10803 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10804 is deprecated and will be removed from pandas in a future version. Use
    10805 pandas.concat instead. 
    10806 self.df = self.df.append(df_add, ignore_index=True) 
    10807 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10808 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10809 is deprecated and will be removed from pandas in a future version. Use
    10810 pandas.concat instead. 
    10811 self.df = self.df.append(df_add, ignore_index=True) 
    10812 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10813 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10814 is deprecated and will be removed from pandas in a future version. Use
    10815 pandas.concat instead. 
    10816 self.df = self.df.append(df_add, ignore_index=True) 
    10817 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10818 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10819 is deprecated and will be removed from pandas in a future version. Use
    10820 pandas.concat instead. 
    10821 self.df = self.df.append(df_add, ignore_index=True) 
    10822 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10823 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10824 is deprecated and will be removed from pandas in a future version. Use
    10825 pandas.concat instead. 
    10826 self.df = self.df.append(df_add, ignore_index=True) 
    10827 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10828 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10829 is deprecated and will be removed from pandas in a future version. Use
    10830 pandas.concat instead. 
    10831 self.df = self.df.append(df_add, ignore_index=True) 
    10832 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10833 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10834 is deprecated and will be removed from pandas in a future version. Use
    10835 pandas.concat instead. 
    10836 self.df = self.df.append(df_add, ignore_index=True) 
    10837 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10838 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10839 is deprecated and will be removed from pandas in a future version. Use
    10840 pandas.concat instead. 
    10841 self.df = self.df.append(df_add, ignore_index=True) 
    10842 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10843 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10844 is deprecated and will be removed from pandas in a future version. Use
    10845 pandas.concat instead. 
    10846 self.df = self.df.append(df_add, ignore_index=True) 
    10847 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10848 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10849 is deprecated and will be removed from pandas in a future version. Use
    10850 pandas.concat instead. 
    10851 self.df = self.df.append(df_add, ignore_index=True) 
    10852 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10853 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10854 is deprecated and will be removed from pandas in a future version. Use
    10855 pandas.concat instead. 
    10856 self.df = self.df.append(df_add, ignore_index=True) 
    10857 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10858 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10859 is deprecated and will be removed from pandas in a future version. Use
    10860 pandas.concat instead. 
    10861 self.df = self.df.append(df_add, ignore_index=True) 
    10862 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10863 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10864 is deprecated and will be removed from pandas in a future version. Use
    10865 pandas.concat instead. 
    10866 self.df = self.df.append(df_add, ignore_index=True) 
    10867 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10868 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10869 is deprecated and will be removed from pandas in a future version. Use
    10870 pandas.concat instead. 
    10871 self.df = self.df.append(df_add, ignore_index=True) 
    10872 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10873 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10874 is deprecated and will be removed from pandas in a future version. Use
    10875 pandas.concat instead. 
    10876 self.df = self.df.append(df_add, ignore_index=True) 
    10877 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10878 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10879 is deprecated and will be removed from pandas in a future version. Use
    10880 pandas.concat instead. 
    10881 self.df = self.df.append(df_add, ignore_index=True) 
    10882 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10883 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10884 is deprecated and will be removed from pandas in a future version. Use
    10885 pandas.concat instead. 
    10886 self.df = self.df.append(df_add, ignore_index=True) 
    10887 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10888 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10889 is deprecated and will be removed from pandas in a future version. Use
    10890 pandas.concat instead. 
    10891 self.df = self.df.append(df_add, ignore_index=True) 
    10892 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10893 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10894 is deprecated and will be removed from pandas in a future version. Use
    10895 pandas.concat instead. 
    10896 self.df = self.df.append(df_add, ignore_index=True) 
    10897 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10898 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10899 is deprecated and will be removed from pandas in a future version. Use
    10900 pandas.concat instead. 
    10901 self.df = self.df.append(df_add, ignore_index=True) 
    10902 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10903 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10904 is deprecated and will be removed from pandas in a future version. Use
    10905 pandas.concat instead. 
    10906 self.df = self.df.append(df_add, ignore_index=True) 
    10907 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10908 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10909 is deprecated and will be removed from pandas in a future version. Use
    10910 pandas.concat instead. 
    10911 self.df = self.df.append(df_add, ignore_index=True) 
    10912 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10913 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10914 is deprecated and will be removed from pandas in a future version. Use
    10915 pandas.concat instead. 
    10916 self.df = self.df.append(df_add, ignore_index=True) 
    10917 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10918 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10919 is deprecated and will be removed from pandas in a future version. Use
    10920 pandas.concat instead. 
    10921 self.df = self.df.append(df_add, ignore_index=True) 
    10922 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10923 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10924 is deprecated and will be removed from pandas in a future version. Use
    10925 pandas.concat instead. 
    10926 self.df = self.df.append(df_add, ignore_index=True) 
    10927 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10928 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10929 is deprecated and will be removed from pandas in a future version. Use
    10930 pandas.concat instead. 
    10931 self.df = self.df.append(df_add, ignore_index=True) 
    10932 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10933 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10934 is deprecated and will be removed from pandas in a future version. Use
    10935 pandas.concat instead. 
    10936 self.df = self.df.append(df_add, ignore_index=True) 
    10937 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10938 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10939 is deprecated and will be removed from pandas in a future version. Use
    10940 pandas.concat instead. 
    10941 self.df = self.df.append(df_add, ignore_index=True) 
    10942 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10943 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10944 is deprecated and will be removed from pandas in a future version. Use
    10945 pandas.concat instead. 
    10946 self.df = self.df.append(df_add, ignore_index=True) 
    10947 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10948 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10949 is deprecated and will be removed from pandas in a future version. Use
    10950 pandas.concat instead. 
    10951 self.df = self.df.append(df_add, ignore_index=True) 
    10952 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10953 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10954 is deprecated and will be removed from pandas in a future version. Use
    10955 pandas.concat instead. 
    10956 self.df = self.df.append(df_add, ignore_index=True) 
    10957 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10958 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10959 is deprecated and will be removed from pandas in a future version. Use
    10960 pandas.concat instead. 
    10961 self.df = self.df.append(df_add, ignore_index=True) 
    10962 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10963 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10964 is deprecated and will be removed from pandas in a future version. Use
    10965 pandas.concat instead. 
    10966 self.df = self.df.append(df_add, ignore_index=True) 
    10967 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10968 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10969 is deprecated and will be removed from pandas in a future version. Use
    10970 pandas.concat instead. 
    10971 self.df = self.df.append(df_add, ignore_index=True) 
    10972 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10973 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10974 is deprecated and will be removed from pandas in a future version. Use
    10975 pandas.concat instead. 
    10976 self.df = self.df.append(df_add, ignore_index=True) 
    10977 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10978 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10979 is deprecated and will be removed from pandas in a future version. Use
    10980 pandas.concat instead. 
    10981 self.df = self.df.append(df_add, ignore_index=True) 
    10982 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10983 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10984 is deprecated and will be removed from pandas in a future version. Use
    10985 pandas.concat instead. 
    10986 self.df = self.df.append(df_add, ignore_index=True) 
    10987 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10988 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10989 is deprecated and will be removed from pandas in a future version. Use
    10990 pandas.concat instead. 
    10991 self.df = self.df.append(df_add, ignore_index=True) 
    10992 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10993 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10994 is deprecated and will be removed from pandas in a future version. Use
    10995 pandas.concat instead. 
    10996 self.df = self.df.append(df_add, ignore_index=True) 
    10997 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    10998 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    10999 is deprecated and will be removed from pandas in a future version. Use
    11000 pandas.concat instead. 
    11001 self.df = self.df.append(df_add, ignore_index=True) 
    11002 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11003 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11004 is deprecated and will be removed from pandas in a future version. Use
    11005 pandas.concat instead. 
    11006 self.df = self.df.append(df_add, ignore_index=True) 
    11007 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11008 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11009 is deprecated and will be removed from pandas in a future version. Use
    11010 pandas.concat instead. 
    11011 self.df = self.df.append(df_add, ignore_index=True) 
    11012 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11013 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11014 is deprecated and will be removed from pandas in a future version. Use
    11015 pandas.concat instead. 
    11016 self.df = self.df.append(df_add, ignore_index=True) 
    11017 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11018 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11019 is deprecated and will be removed from pandas in a future version. Use
    11020 pandas.concat instead. 
    11021 self.df = self.df.append(df_add, ignore_index=True) 
    11022 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11023 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11024 is deprecated and will be removed from pandas in a future version. Use
    11025 pandas.concat instead. 
    11026 self.df = self.df.append(df_add, ignore_index=True) 
    11027 Unique peptide pairs with pseudobonds: 29 
    11028 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11029 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11030 is deprecated and will be removed from pandas in a future version. Use
    11031 pandas.concat instead. 
    11032 self.df = self.df.append(df_add, ignore_index=True) 
    11033 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11034 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11035 is deprecated and will be removed from pandas in a future version. Use
    11036 pandas.concat instead. 
    11037 self.df = self.df.append(df_add, ignore_index=True) 
    11038 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11039 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11040 is deprecated and will be removed from pandas in a future version. Use
    11041 pandas.concat instead. 
    11042 self.df = self.df.append(df_add, ignore_index=True) 
    11043 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11044 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11045 is deprecated and will be removed from pandas in a future version. Use
    11046 pandas.concat instead. 
    11047 self.df = self.df.append(df_add, ignore_index=True) 
    11048 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11049 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11050 is deprecated and will be removed from pandas in a future version. Use
    11051 pandas.concat instead. 
    11052 self.df = self.df.append(df_add, ignore_index=True) 
    11053 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11054 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11055 is deprecated and will be removed from pandas in a future version. Use
    11056 pandas.concat instead. 
    11057 self.df = self.df.append(df_add, ignore_index=True) 
    11058 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11059 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11060 is deprecated and will be removed from pandas in a future version. Use
    11061 pandas.concat instead. 
    11062 self.df = self.df.append(df_add, ignore_index=True) 
    11063 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11064 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11065 is deprecated and will be removed from pandas in a future version. Use
    11066 pandas.concat instead. 
    11067 self.df = self.df.append(df_add, ignore_index=True) 
    11068 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11069 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11070 is deprecated and will be removed from pandas in a future version. Use
    11071 pandas.concat instead. 
    11072 self.df = self.df.append(df_add, ignore_index=True) 
    11073 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11074 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11075 is deprecated and will be removed from pandas in a future version. Use
    11076 pandas.concat instead. 
    11077 self.df = self.df.append(df_add, ignore_index=True) 
    11078 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11079 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11080 is deprecated and will be removed from pandas in a future version. Use
    11081 pandas.concat instead. 
    11082 self.df = self.df.append(df_add, ignore_index=True) 
    11083 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11084 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11085 is deprecated and will be removed from pandas in a future version. Use
    11086 pandas.concat instead. 
    11087 self.df = self.df.append(df_add, ignore_index=True) 
    11088 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11089 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11090 is deprecated and will be removed from pandas in a future version. Use
    11091 pandas.concat instead. 
    11092 self.df = self.df.append(df_add, ignore_index=True) 
    11093 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11094 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11095 is deprecated and will be removed from pandas in a future version. Use
    11096 pandas.concat instead. 
    11097 self.df = self.df.append(df_add, ignore_index=True) 
    11098 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11099 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11100 is deprecated and will be removed from pandas in a future version. Use
    11101 pandas.concat instead. 
    11102 self.df = self.df.append(df_add, ignore_index=True) 
    11103 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11104 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11105 is deprecated and will be removed from pandas in a future version. Use
    11106 pandas.concat instead. 
    11107 self.df = self.df.append(df_add, ignore_index=True) 
    11108 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11109 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11110 is deprecated and will be removed from pandas in a future version. Use
    11111 pandas.concat instead. 
    11112 self.df = self.df.append(df_add, ignore_index=True) 
    11113 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11114 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11115 is deprecated and will be removed from pandas in a future version. Use
    11116 pandas.concat instead. 
    11117 self.df = self.df.append(df_add, ignore_index=True) 
    11118 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11119 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11120 is deprecated and will be removed from pandas in a future version. Use
    11121 pandas.concat instead. 
    11122 self.df = self.df.append(df_add, ignore_index=True) 
    11123 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11124 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11125 is deprecated and will be removed from pandas in a future version. Use
    11126 pandas.concat instead. 
    11127 self.df = self.df.append(df_add, ignore_index=True) 
    11128 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11129 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11130 is deprecated and will be removed from pandas in a future version. Use
    11131 pandas.concat instead. 
    11132 self.df = self.df.append(df_add, ignore_index=True) 
    11133 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11134 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11135 is deprecated and will be removed from pandas in a future version. Use
    11136 pandas.concat instead. 
    11137 self.df = self.df.append(df_add, ignore_index=True) 
    11138 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11139 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11140 is deprecated and will be removed from pandas in a future version. Use
    11141 pandas.concat instead. 
    11142 self.df = self.df.append(df_add, ignore_index=True) 
    11143 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11144 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11145 is deprecated and will be removed from pandas in a future version. Use
    11146 pandas.concat instead. 
    11147 self.df = self.df.append(df_add, ignore_index=True) 
    11148 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11149 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11150 is deprecated and will be removed from pandas in a future version. Use
    11151 pandas.concat instead. 
    11152 self.df = self.df.append(df_add, ignore_index=True) 
    11153 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11154 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11155 is deprecated and will be removed from pandas in a future version. Use
    11156 pandas.concat instead. 
    11157 self.df = self.df.append(df_add, ignore_index=True) 
    11158 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11159 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11160 is deprecated and will be removed from pandas in a future version. Use
    11161 pandas.concat instead. 
    11162 self.df = self.df.append(df_add, ignore_index=True) 
    11163 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11164 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11165 is deprecated and will be removed from pandas in a future version. Use
    11166 pandas.concat instead. 
    11167 self.df = self.df.append(df_add, ignore_index=True) 
    11168 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11169 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11170 is deprecated and will be removed from pandas in a future version. Use
    11171 pandas.concat instead. 
    11172 self.df = self.df.append(df_add, ignore_index=True) 
    11173 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11174 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11175 is deprecated and will be removed from pandas in a future version. Use
    11176 pandas.concat instead. 
    11177 self.df = self.df.append(df_add, ignore_index=True) 
    11178 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11179 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11180 is deprecated and will be removed from pandas in a future version. Use
    11181 pandas.concat instead. 
    11182 self.df = self.df.append(df_add, ignore_index=True) 
    11183 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11184 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11185 is deprecated and will be removed from pandas in a future version. Use
    11186 pandas.concat instead. 
    11187 self.df = self.df.append(df_add, ignore_index=True) 
    11188 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11189 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11190 is deprecated and will be removed from pandas in a future version. Use
    11191 pandas.concat instead. 
    11192 self.df = self.df.append(df_add, ignore_index=True) 
    11193 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11194 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11195 is deprecated and will be removed from pandas in a future version. Use
    11196 pandas.concat instead. 
    11197 self.df = self.df.append(df_add, ignore_index=True) 
    11198 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11199 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11200 is deprecated and will be removed from pandas in a future version. Use
    11201 pandas.concat instead. 
    11202 self.df = self.df.append(df_add, ignore_index=True) 
    11203 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11204 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11205 is deprecated and will be removed from pandas in a future version. Use
    11206 pandas.concat instead. 
    11207 self.df = self.df.append(df_add, ignore_index=True) 
    11208 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11209 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11210 is deprecated and will be removed from pandas in a future version. Use
    11211 pandas.concat instead. 
    11212 self.df = self.df.append(df_add, ignore_index=True) 
    11213 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11214 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11215 is deprecated and will be removed from pandas in a future version. Use
    11216 pandas.concat instead. 
    11217 self.df = self.df.append(df_add, ignore_index=True) 
    11218 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11219 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11220 is deprecated and will be removed from pandas in a future version. Use
    11221 pandas.concat instead. 
    11222 self.df = self.df.append(df_add, ignore_index=True) 
    11223 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11224 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11225 is deprecated and will be removed from pandas in a future version. Use
    11226 pandas.concat instead. 
    11227 self.df = self.df.append(df_add, ignore_index=True) 
    11228 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11229 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11230 is deprecated and will be removed from pandas in a future version. Use
    11231 pandas.concat instead. 
    11232 self.df = self.df.append(df_add, ignore_index=True) 
    11233 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11234 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11235 is deprecated and will be removed from pandas in a future version. Use
    11236 pandas.concat instead. 
    11237 self.df = self.df.append(df_add, ignore_index=True) 
    11238 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11239 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11240 is deprecated and will be removed from pandas in a future version. Use
    11241 pandas.concat instead. 
    11242 self.df = self.df.append(df_add, ignore_index=True) 
    11243 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11244 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11245 is deprecated and will be removed from pandas in a future version. Use
    11246 pandas.concat instead. 
    11247 self.df = self.df.append(df_add, ignore_index=True) 
    11248 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11249 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11250 is deprecated and will be removed from pandas in a future version. Use
    11251 pandas.concat instead. 
    11252 self.df = self.df.append(df_add, ignore_index=True) 
    11253 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11254 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11255 is deprecated and will be removed from pandas in a future version. Use
    11256 pandas.concat instead. 
    11257 self.df = self.df.append(df_add, ignore_index=True) 
    11258 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11259 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11260 is deprecated and will be removed from pandas in a future version. Use
    11261 pandas.concat instead. 
    11262 self.df = self.df.append(df_add, ignore_index=True) 
    11263 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11264 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11265 is deprecated and will be removed from pandas in a future version. Use
    11266 pandas.concat instead. 
    11267 self.df = self.df.append(df_add, ignore_index=True) 
    11268 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11269 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11270 is deprecated and will be removed from pandas in a future version. Use
    11271 pandas.concat instead. 
    11272 self.df = self.df.append(df_add, ignore_index=True) 
    11273 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11274 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11275 is deprecated and will be removed from pandas in a future version. Use
    11276 pandas.concat instead. 
    11277 self.df = self.df.append(df_add, ignore_index=True) 
    11278 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11279 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11280 is deprecated and will be removed from pandas in a future version. Use
    11281 pandas.concat instead. 
    11282 self.df = self.df.append(df_add, ignore_index=True) 
    11283 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11284 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11285 is deprecated and will be removed from pandas in a future version. Use
    11286 pandas.concat instead. 
    11287 self.df = self.df.append(df_add, ignore_index=True) 
    11288 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11289 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11290 is deprecated and will be removed from pandas in a future version. Use
    11291 pandas.concat instead. 
    11292 self.df = self.df.append(df_add, ignore_index=True) 
    11293 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11294 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11295 is deprecated and will be removed from pandas in a future version. Use
    11296 pandas.concat instead. 
    11297 self.df = self.df.append(df_add, ignore_index=True) 
    11298 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11299 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11300 is deprecated and will be removed from pandas in a future version. Use
    11301 pandas.concat instead. 
    11302 self.df = self.df.append(df_add, ignore_index=True) 
    11303 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11304 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11305 is deprecated and will be removed from pandas in a future version. Use
    11306 pandas.concat instead. 
    11307 self.df = self.df.append(df_add, ignore_index=True) 
    11308 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11309 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11310 is deprecated and will be removed from pandas in a future version. Use
    11311 pandas.concat instead. 
    11312 self.df = self.df.append(df_add, ignore_index=True) 
    11313 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11314 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11315 is deprecated and will be removed from pandas in a future version. Use
    11316 pandas.concat instead. 
    11317 self.df = self.df.append(df_add, ignore_index=True) 
    11318 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11319 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11320 is deprecated and will be removed from pandas in a future version. Use
    11321 pandas.concat instead. 
    11322 self.df = self.df.append(df_add, ignore_index=True) 
    11323 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11324 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11325 is deprecated and will be removed from pandas in a future version. Use
    11326 pandas.concat instead. 
    11327 self.df = self.df.append(df_add, ignore_index=True) 
    11328 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11329 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11330 is deprecated and will be removed from pandas in a future version. Use
    11331 pandas.concat instead. 
    11332 self.df = self.df.append(df_add, ignore_index=True) 
    11333 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11334 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11335 is deprecated and will be removed from pandas in a future version. Use
    11336 pandas.concat instead. 
    11337 self.df = self.df.append(df_add, ignore_index=True) 
    11338 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11339 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11340 is deprecated and will be removed from pandas in a future version. Use
    11341 pandas.concat instead. 
    11342 self.df = self.df.append(df_add, ignore_index=True) 
    11343 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11344 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11345 is deprecated and will be removed from pandas in a future version. Use
    11346 pandas.concat instead. 
    11347 self.df = self.df.append(df_add, ignore_index=True) 
    11348 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11349 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11350 is deprecated and will be removed from pandas in a future version. Use
    11351 pandas.concat instead. 
    11352 self.df = self.df.append(df_add, ignore_index=True) 
    11353 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11354 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11355 is deprecated and will be removed from pandas in a future version. Use
    11356 pandas.concat instead. 
    11357 self.df = self.df.append(df_add, ignore_index=True) 
    11358 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11359 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11360 is deprecated and will be removed from pandas in a future version. Use
    11361 pandas.concat instead. 
    11362 self.df = self.df.append(df_add, ignore_index=True) 
    11363 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11364 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11365 is deprecated and will be removed from pandas in a future version. Use
    11366 pandas.concat instead. 
    11367 self.df = self.df.append(df_add, ignore_index=True) 
    11368 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11369 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11370 is deprecated and will be removed from pandas in a future version. Use
    11371 pandas.concat instead. 
    11372 self.df = self.df.append(df_add, ignore_index=True) 
    11373 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11374 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11375 is deprecated and will be removed from pandas in a future version. Use
    11376 pandas.concat instead. 
    11377 self.df = self.df.append(df_add, ignore_index=True) 
    11378 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11379 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11380 is deprecated and will be removed from pandas in a future version. Use
    11381 pandas.concat instead. 
    11382 self.df = self.df.append(df_add, ignore_index=True) 
    11383 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11384 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11385 is deprecated and will be removed from pandas in a future version. Use
    11386 pandas.concat instead. 
    11387 self.df = self.df.append(df_add, ignore_index=True) 
    11388 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11389 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11390 is deprecated and will be removed from pandas in a future version. Use
    11391 pandas.concat instead. 
    11392 self.df = self.df.append(df_add, ignore_index=True) 
    11393 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11394 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11395 is deprecated and will be removed from pandas in a future version. Use
    11396 pandas.concat instead. 
    11397 self.df = self.df.append(df_add, ignore_index=True) 
    11398 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11399 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11400 is deprecated and will be removed from pandas in a future version. Use
    11401 pandas.concat instead. 
    11402 self.df = self.df.append(df_add, ignore_index=True) 
    11403 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11404 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11405 is deprecated and will be removed from pandas in a future version. Use
    11406 pandas.concat instead. 
    11407 self.df = self.df.append(df_add, ignore_index=True) 
    11408 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11409 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11410 is deprecated and will be removed from pandas in a future version. Use
    11411 pandas.concat instead. 
    11412 self.df = self.df.append(df_add, ignore_index=True) 
    11413 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11414 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11415 is deprecated and will be removed from pandas in a future version. Use
    11416 pandas.concat instead. 
    11417 self.df = self.df.append(df_add, ignore_index=True) 
    11418 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11419 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11420 is deprecated and will be removed from pandas in a future version. Use
    11421 pandas.concat instead. 
    11422 self.df = self.df.append(df_add, ignore_index=True) 
    11423 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11424 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11425 is deprecated and will be removed from pandas in a future version. Use
    11426 pandas.concat instead. 
    11427 self.df = self.df.append(df_add, ignore_index=True) 
    11428 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    11429 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate2-combined_1,2,4.pb 
    11430 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    11431 commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate2-combined_1,2,4.tsv 
    11432  
    11433 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    11434 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_combined-consensus-all-
    11435 files_no duplicates.xlsx 
    11436 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11437 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11438 is deprecated and will be removed from pandas in a future version. Use
    11439 pandas.concat instead. 
    11440 self.df = self.df.append(df_add, ignore_index=True) 
    11441 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11442 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11443 is deprecated and will be removed from pandas in a future version. Use
    11444 pandas.concat instead. 
    11445 self.df = self.df.append(df_add, ignore_index=True) 
    11446 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11447 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11448 is deprecated and will be removed from pandas in a future version. Use
    11449 pandas.concat instead. 
    11450 self.df = self.df.append(df_add, ignore_index=True) 
    11451 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11452 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11453 is deprecated and will be removed from pandas in a future version. Use
    11454 pandas.concat instead. 
    11455 self.df = self.df.append(df_add, ignore_index=True) 
    11456 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11457 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11458 is deprecated and will be removed from pandas in a future version. Use
    11459 pandas.concat instead. 
    11460 self.df = self.df.append(df_add, ignore_index=True) 
    11461 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11462 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11463 is deprecated and will be removed from pandas in a future version. Use
    11464 pandas.concat instead. 
    11465 self.df = self.df.append(df_add, ignore_index=True) 
    11466 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11467 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11468 is deprecated and will be removed from pandas in a future version. Use
    11469 pandas.concat instead. 
    11470 self.df = self.df.append(df_add, ignore_index=True) 
    11471 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11472 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11473 is deprecated and will be removed from pandas in a future version. Use
    11474 pandas.concat instead. 
    11475 self.df = self.df.append(df_add, ignore_index=True) 
    11476 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11477 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11478 is deprecated and will be removed from pandas in a future version. Use
    11479 pandas.concat instead. 
    11480 self.df = self.df.append(df_add, ignore_index=True) 
    11481 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11482 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11483 is deprecated and will be removed from pandas in a future version. Use
    11484 pandas.concat instead. 
    11485 self.df = self.df.append(df_add, ignore_index=True) 
    11486 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11487 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11488 is deprecated and will be removed from pandas in a future version. Use
    11489 pandas.concat instead. 
    11490 self.df = self.df.append(df_add, ignore_index=True) 
    11491 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11492 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11493 is deprecated and will be removed from pandas in a future version. Use
    11494 pandas.concat instead. 
    11495 self.df = self.df.append(df_add, ignore_index=True) 
    11496 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11497 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11498 is deprecated and will be removed from pandas in a future version. Use
    11499 pandas.concat instead. 
    11500 self.df = self.df.append(df_add, ignore_index=True) 
    11501 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11502 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11503 is deprecated and will be removed from pandas in a future version. Use
    11504 pandas.concat instead. 
    11505 self.df = self.df.append(df_add, ignore_index=True) 
    11506 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11507 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11508 is deprecated and will be removed from pandas in a future version. Use
    11509 pandas.concat instead. 
    11510 self.df = self.df.append(df_add, ignore_index=True) 
    11511 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11512 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11513 is deprecated and will be removed from pandas in a future version. Use
    11514 pandas.concat instead. 
    11515 self.df = self.df.append(df_add, ignore_index=True) 
    11516 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11517 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11518 is deprecated and will be removed from pandas in a future version. Use
    11519 pandas.concat instead. 
    11520 self.df = self.df.append(df_add, ignore_index=True) 
    11521 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11522 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11523 is deprecated and will be removed from pandas in a future version. Use
    11524 pandas.concat instead. 
    11525 self.df = self.df.append(df_add, ignore_index=True) 
    11526 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11527 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11528 is deprecated and will be removed from pandas in a future version. Use
    11529 pandas.concat instead. 
    11530 self.df = self.df.append(df_add, ignore_index=True) 
    11531 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11532 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11533 is deprecated and will be removed from pandas in a future version. Use
    11534 pandas.concat instead. 
    11535 self.df = self.df.append(df_add, ignore_index=True) 
    11536 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11537 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11538 is deprecated and will be removed from pandas in a future version. Use
    11539 pandas.concat instead. 
    11540 self.df = self.df.append(df_add, ignore_index=True) 
    11541 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11542 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11543 is deprecated and will be removed from pandas in a future version. Use
    11544 pandas.concat instead. 
    11545 self.df = self.df.append(df_add, ignore_index=True) 
    11546 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11547 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11548 is deprecated and will be removed from pandas in a future version. Use
    11549 pandas.concat instead. 
    11550 self.df = self.df.append(df_add, ignore_index=True) 
    11551 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11552 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11553 is deprecated and will be removed from pandas in a future version. Use
    11554 pandas.concat instead. 
    11555 self.df = self.df.append(df_add, ignore_index=True) 
    11556 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11557 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11558 is deprecated and will be removed from pandas in a future version. Use
    11559 pandas.concat instead. 
    11560 self.df = self.df.append(df_add, ignore_index=True) 
    11561 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11562 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11563 is deprecated and will be removed from pandas in a future version. Use
    11564 pandas.concat instead. 
    11565 self.df = self.df.append(df_add, ignore_index=True) 
    11566 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11567 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11568 is deprecated and will be removed from pandas in a future version. Use
    11569 pandas.concat instead. 
    11570 self.df = self.df.append(df_add, ignore_index=True) 
    11571 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11572 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11573 is deprecated and will be removed from pandas in a future version. Use
    11574 pandas.concat instead. 
    11575 self.df = self.df.append(df_add, ignore_index=True) 
    11576 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11577 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11578 is deprecated and will be removed from pandas in a future version. Use
    11579 pandas.concat instead. 
    11580 self.df = self.df.append(df_add, ignore_index=True) 
    11581 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11582 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11583 is deprecated and will be removed from pandas in a future version. Use
    11584 pandas.concat instead. 
    11585 self.df = self.df.append(df_add, ignore_index=True) 
    11586 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11587 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11588 is deprecated and will be removed from pandas in a future version. Use
    11589 pandas.concat instead. 
    11590 self.df = self.df.append(df_add, ignore_index=True) 
    11591 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11592 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11593 is deprecated and will be removed from pandas in a future version. Use
    11594 pandas.concat instead. 
    11595 self.df = self.df.append(df_add, ignore_index=True) 
    11596 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11597 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11598 is deprecated and will be removed from pandas in a future version. Use
    11599 pandas.concat instead. 
    11600 self.df = self.df.append(df_add, ignore_index=True) 
    11601 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11602 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11603 is deprecated and will be removed from pandas in a future version. Use
    11604 pandas.concat instead. 
    11605 self.df = self.df.append(df_add, ignore_index=True) 
    11606 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11607 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11608 is deprecated and will be removed from pandas in a future version. Use
    11609 pandas.concat instead. 
    11610 self.df = self.df.append(df_add, ignore_index=True) 
    11611 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11612 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11613 is deprecated and will be removed from pandas in a future version. Use
    11614 pandas.concat instead. 
    11615 self.df = self.df.append(df_add, ignore_index=True) 
    11616 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11617 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11618 is deprecated and will be removed from pandas in a future version. Use
    11619 pandas.concat instead. 
    11620 self.df = self.df.append(df_add, ignore_index=True) 
    11621 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11622 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11623 is deprecated and will be removed from pandas in a future version. Use
    11624 pandas.concat instead. 
    11625 self.df = self.df.append(df_add, ignore_index=True) 
    11626 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11627 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11628 is deprecated and will be removed from pandas in a future version. Use
    11629 pandas.concat instead. 
    11630 self.df = self.df.append(df_add, ignore_index=True) 
    11631 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11632 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11633 is deprecated and will be removed from pandas in a future version. Use
    11634 pandas.concat instead. 
    11635 self.df = self.df.append(df_add, ignore_index=True) 
    11636 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11637 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11638 is deprecated and will be removed from pandas in a future version. Use
    11639 pandas.concat instead. 
    11640 self.df = self.df.append(df_add, ignore_index=True) 
    11641 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11642 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11643 is deprecated and will be removed from pandas in a future version. Use
    11644 pandas.concat instead. 
    11645 self.df = self.df.append(df_add, ignore_index=True) 
    11646 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11647 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11648 is deprecated and will be removed from pandas in a future version. Use
    11649 pandas.concat instead. 
    11650 self.df = self.df.append(df_add, ignore_index=True) 
    11651 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11652 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11653 is deprecated and will be removed from pandas in a future version. Use
    11654 pandas.concat instead. 
    11655 self.df = self.df.append(df_add, ignore_index=True) 
    11656 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11657 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11658 is deprecated and will be removed from pandas in a future version. Use
    11659 pandas.concat instead. 
    11660 self.df = self.df.append(df_add, ignore_index=True) 
    11661 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11662 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11663 is deprecated and will be removed from pandas in a future version. Use
    11664 pandas.concat instead. 
    11665 self.df = self.df.append(df_add, ignore_index=True) 
    11666 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11667 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11668 is deprecated and will be removed from pandas in a future version. Use
    11669 pandas.concat instead. 
    11670 self.df = self.df.append(df_add, ignore_index=True) 
    11671 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11672 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11673 is deprecated and will be removed from pandas in a future version. Use
    11674 pandas.concat instead. 
    11675 self.df = self.df.append(df_add, ignore_index=True) 
    11676 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11677 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11678 is deprecated and will be removed from pandas in a future version. Use
    11679 pandas.concat instead. 
    11680 self.df = self.df.append(df_add, ignore_index=True) 
    11681 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11682 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11683 is deprecated and will be removed from pandas in a future version. Use
    11684 pandas.concat instead. 
    11685 self.df = self.df.append(df_add, ignore_index=True) 
    11686 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11687 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11688 is deprecated and will be removed from pandas in a future version. Use
    11689 pandas.concat instead. 
    11690 self.df = self.df.append(df_add, ignore_index=True) 
    11691 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11692 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11693 is deprecated and will be removed from pandas in a future version. Use
    11694 pandas.concat instead. 
    11695 self.df = self.df.append(df_add, ignore_index=True) 
    11696 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11697 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11698 is deprecated and will be removed from pandas in a future version. Use
    11699 pandas.concat instead. 
    11700 self.df = self.df.append(df_add, ignore_index=True) 
    11701 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11702 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11703 is deprecated and will be removed from pandas in a future version. Use
    11704 pandas.concat instead. 
    11705 self.df = self.df.append(df_add, ignore_index=True) 
    11706 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11707 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11708 is deprecated and will be removed from pandas in a future version. Use
    11709 pandas.concat instead. 
    11710 self.df = self.df.append(df_add, ignore_index=True) 
    11711 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11712 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11713 is deprecated and will be removed from pandas in a future version. Use
    11714 pandas.concat instead. 
    11715 self.df = self.df.append(df_add, ignore_index=True) 
    11716 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11717 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11718 is deprecated and will be removed from pandas in a future version. Use
    11719 pandas.concat instead. 
    11720 self.df = self.df.append(df_add, ignore_index=True) 
    11721 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11722 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11723 is deprecated and will be removed from pandas in a future version. Use
    11724 pandas.concat instead. 
    11725 self.df = self.df.append(df_add, ignore_index=True) 
    11726 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11727 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11728 is deprecated and will be removed from pandas in a future version. Use
    11729 pandas.concat instead. 
    11730 self.df = self.df.append(df_add, ignore_index=True) 
    11731 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11732 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11733 is deprecated and will be removed from pandas in a future version. Use
    11734 pandas.concat instead. 
    11735 self.df = self.df.append(df_add, ignore_index=True) 
    11736 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11737 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11738 is deprecated and will be removed from pandas in a future version. Use
    11739 pandas.concat instead. 
    11740 self.df = self.df.append(df_add, ignore_index=True) 
    11741 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11742 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11743 is deprecated and will be removed from pandas in a future version. Use
    11744 pandas.concat instead. 
    11745 self.df = self.df.append(df_add, ignore_index=True) 
    11746 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11747 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11748 is deprecated and will be removed from pandas in a future version. Use
    11749 pandas.concat instead. 
    11750 self.df = self.df.append(df_add, ignore_index=True) 
    11751 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11752 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11753 is deprecated and will be removed from pandas in a future version. Use
    11754 pandas.concat instead. 
    11755 self.df = self.df.append(df_add, ignore_index=True) 
    11756 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11757 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11758 is deprecated and will be removed from pandas in a future version. Use
    11759 pandas.concat instead. 
    11760 self.df = self.df.append(df_add, ignore_index=True) 
    11761 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11762 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11763 is deprecated and will be removed from pandas in a future version. Use
    11764 pandas.concat instead. 
    11765 self.df = self.df.append(df_add, ignore_index=True) 
    11766 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11767 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11768 is deprecated and will be removed from pandas in a future version. Use
    11769 pandas.concat instead. 
    11770 self.df = self.df.append(df_add, ignore_index=True) 
    11771 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11772 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11773 is deprecated and will be removed from pandas in a future version. Use
    11774 pandas.concat instead. 
    11775 self.df = self.df.append(df_add, ignore_index=True) 
    11776 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11777 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11778 is deprecated and will be removed from pandas in a future version. Use
    11779 pandas.concat instead. 
    11780 self.df = self.df.append(df_add, ignore_index=True) 
    11781 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11782 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11783 is deprecated and will be removed from pandas in a future version. Use
    11784 pandas.concat instead. 
    11785 self.df = self.df.append(df_add, ignore_index=True) 
    11786 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11787 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11788 is deprecated and will be removed from pandas in a future version. Use
    11789 pandas.concat instead. 
    11790 self.df = self.df.append(df_add, ignore_index=True) 
    11791 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11792 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11793 is deprecated and will be removed from pandas in a future version. Use
    11794 pandas.concat instead. 
    11795 self.df = self.df.append(df_add, ignore_index=True) 
    11796 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11797 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11798 is deprecated and will be removed from pandas in a future version. Use
    11799 pandas.concat instead. 
    11800 self.df = self.df.append(df_add, ignore_index=True) 
    11801 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11802 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11803 is deprecated and will be removed from pandas in a future version. Use
    11804 pandas.concat instead. 
    11805 self.df = self.df.append(df_add, ignore_index=True) 
    11806 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11807 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11808 is deprecated and will be removed from pandas in a future version. Use
    11809 pandas.concat instead. 
    11810 self.df = self.df.append(df_add, ignore_index=True) 
    11811 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11812 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11813 is deprecated and will be removed from pandas in a future version. Use
    11814 pandas.concat instead. 
    11815 self.df = self.df.append(df_add, ignore_index=True) 
    11816 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11817 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11818 is deprecated and will be removed from pandas in a future version. Use
    11819 pandas.concat instead. 
    11820 self.df = self.df.append(df_add, ignore_index=True) 
    11821 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11822 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11823 is deprecated and will be removed from pandas in a future version. Use
    11824 pandas.concat instead. 
    11825 self.df = self.df.append(df_add, ignore_index=True) 
    11826 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11827 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11828 is deprecated and will be removed from pandas in a future version. Use
    11829 pandas.concat instead. 
    11830 self.df = self.df.append(df_add, ignore_index=True) 
    11831 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11832 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11833 is deprecated and will be removed from pandas in a future version. Use
    11834 pandas.concat instead. 
    11835 self.df = self.df.append(df_add, ignore_index=True) 
    11836 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11837 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11838 is deprecated and will be removed from pandas in a future version. Use
    11839 pandas.concat instead. 
    11840 self.df = self.df.append(df_add, ignore_index=True) 
    11841 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11842 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11843 is deprecated and will be removed from pandas in a future version. Use
    11844 pandas.concat instead. 
    11845 self.df = self.df.append(df_add, ignore_index=True) 
    11846 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11847 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11848 is deprecated and will be removed from pandas in a future version. Use
    11849 pandas.concat instead. 
    11850 self.df = self.df.append(df_add, ignore_index=True) 
    11851 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11852 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11853 is deprecated and will be removed from pandas in a future version. Use
    11854 pandas.concat instead. 
    11855 self.df = self.df.append(df_add, ignore_index=True) 
    11856 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11857 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11858 is deprecated and will be removed from pandas in a future version. Use
    11859 pandas.concat instead. 
    11860 self.df = self.df.append(df_add, ignore_index=True) 
    11861 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11862 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11863 is deprecated and will be removed from pandas in a future version. Use
    11864 pandas.concat instead. 
    11865 self.df = self.df.append(df_add, ignore_index=True) 
    11866 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11867 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11868 is deprecated and will be removed from pandas in a future version. Use
    11869 pandas.concat instead. 
    11870 self.df = self.df.append(df_add, ignore_index=True) 
    11871 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11872 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11873 is deprecated and will be removed from pandas in a future version. Use
    11874 pandas.concat instead. 
    11875 self.df = self.df.append(df_add, ignore_index=True) 
    11876 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11877 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11878 is deprecated and will be removed from pandas in a future version. Use
    11879 pandas.concat instead. 
    11880 self.df = self.df.append(df_add, ignore_index=True) 
    11881 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11882 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11883 is deprecated and will be removed from pandas in a future version. Use
    11884 pandas.concat instead. 
    11885 self.df = self.df.append(df_add, ignore_index=True) 
    11886 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11887 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11888 is deprecated and will be removed from pandas in a future version. Use
    11889 pandas.concat instead. 
    11890 self.df = self.df.append(df_add, ignore_index=True) 
    11891 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11892 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11893 is deprecated and will be removed from pandas in a future version. Use
    11894 pandas.concat instead. 
    11895 self.df = self.df.append(df_add, ignore_index=True) 
    11896 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11897 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11898 is deprecated and will be removed from pandas in a future version. Use
    11899 pandas.concat instead. 
    11900 self.df = self.df.append(df_add, ignore_index=True) 
    11901 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11902 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11903 is deprecated and will be removed from pandas in a future version. Use
    11904 pandas.concat instead. 
    11905 self.df = self.df.append(df_add, ignore_index=True) 
    11906 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11907 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11908 is deprecated and will be removed from pandas in a future version. Use
    11909 pandas.concat instead. 
    11910 self.df = self.df.append(df_add, ignore_index=True) 
    11911 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11912 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11913 is deprecated and will be removed from pandas in a future version. Use
    11914 pandas.concat instead. 
    11915 self.df = self.df.append(df_add, ignore_index=True) 
    11916 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11917 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11918 is deprecated and will be removed from pandas in a future version. Use
    11919 pandas.concat instead. 
    11920 self.df = self.df.append(df_add, ignore_index=True) 
    11921 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11922 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11923 is deprecated and will be removed from pandas in a future version. Use
    11924 pandas.concat instead. 
    11925 self.df = self.df.append(df_add, ignore_index=True) 
    11926 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11927 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11928 is deprecated and will be removed from pandas in a future version. Use
    11929 pandas.concat instead. 
    11930 self.df = self.df.append(df_add, ignore_index=True) 
    11931 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11932 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11933 is deprecated and will be removed from pandas in a future version. Use
    11934 pandas.concat instead. 
    11935 self.df = self.df.append(df_add, ignore_index=True) 
    11936 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11937 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11938 is deprecated and will be removed from pandas in a future version. Use
    11939 pandas.concat instead. 
    11940 self.df = self.df.append(df_add, ignore_index=True) 
    11941 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11942 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11943 is deprecated and will be removed from pandas in a future version. Use
    11944 pandas.concat instead. 
    11945 self.df = self.df.append(df_add, ignore_index=True) 
    11946 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11947 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11948 is deprecated and will be removed from pandas in a future version. Use
    11949 pandas.concat instead. 
    11950 self.df = self.df.append(df_add, ignore_index=True) 
    11951 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11952 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11953 is deprecated and will be removed from pandas in a future version. Use
    11954 pandas.concat instead. 
    11955 self.df = self.df.append(df_add, ignore_index=True) 
    11956 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11957 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11958 is deprecated and will be removed from pandas in a future version. Use
    11959 pandas.concat instead. 
    11960 self.df = self.df.append(df_add, ignore_index=True) 
    11961 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11962 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11963 is deprecated and will be removed from pandas in a future version. Use
    11964 pandas.concat instead. 
    11965 self.df = self.df.append(df_add, ignore_index=True) 
    11966 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11967 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11968 is deprecated and will be removed from pandas in a future version. Use
    11969 pandas.concat instead. 
    11970 self.df = self.df.append(df_add, ignore_index=True) 
    11971 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11972 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11973 is deprecated and will be removed from pandas in a future version. Use
    11974 pandas.concat instead. 
    11975 self.df = self.df.append(df_add, ignore_index=True) 
    11976 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11977 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11978 is deprecated and will be removed from pandas in a future version. Use
    11979 pandas.concat instead. 
    11980 self.df = self.df.append(df_add, ignore_index=True) 
    11981 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11982 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11983 is deprecated and will be removed from pandas in a future version. Use
    11984 pandas.concat instead. 
    11985 self.df = self.df.append(df_add, ignore_index=True) 
    11986 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11987 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11988 is deprecated and will be removed from pandas in a future version. Use
    11989 pandas.concat instead. 
    11990 self.df = self.df.append(df_add, ignore_index=True) 
    11991 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11992 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11993 is deprecated and will be removed from pandas in a future version. Use
    11994 pandas.concat instead. 
    11995 self.df = self.df.append(df_add, ignore_index=True) 
    11996 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    11997 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    11998 is deprecated and will be removed from pandas in a future version. Use
    11999 pandas.concat instead. 
    12000 self.df = self.df.append(df_add, ignore_index=True) 
    12001 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12002 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12003 is deprecated and will be removed from pandas in a future version. Use
    12004 pandas.concat instead. 
    12005 self.df = self.df.append(df_add, ignore_index=True) 
    12006 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12007 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12008 is deprecated and will be removed from pandas in a future version. Use
    12009 pandas.concat instead. 
    12010 self.df = self.df.append(df_add, ignore_index=True) 
    12011 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12012 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12013 is deprecated and will be removed from pandas in a future version. Use
    12014 pandas.concat instead. 
    12015 self.df = self.df.append(df_add, ignore_index=True) 
    12016 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12017 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12018 is deprecated and will be removed from pandas in a future version. Use
    12019 pandas.concat instead. 
    12020 self.df = self.df.append(df_add, ignore_index=True) 
    12021 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12022 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12023 is deprecated and will be removed from pandas in a future version. Use
    12024 pandas.concat instead. 
    12025 self.df = self.df.append(df_add, ignore_index=True) 
    12026 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12027 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12028 is deprecated and will be removed from pandas in a future version. Use
    12029 pandas.concat instead. 
    12030 self.df = self.df.append(df_add, ignore_index=True) 
    12031 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12032 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12033 is deprecated and will be removed from pandas in a future version. Use
    12034 pandas.concat instead. 
    12035 self.df = self.df.append(df_add, ignore_index=True) 
    12036 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12037 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12038 is deprecated and will be removed from pandas in a future version. Use
    12039 pandas.concat instead. 
    12040 self.df = self.df.append(df_add, ignore_index=True) 
    12041 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12042 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12043 is deprecated and will be removed from pandas in a future version. Use
    12044 pandas.concat instead. 
    12045 self.df = self.df.append(df_add, ignore_index=True) 
    12046 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12047 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12048 is deprecated and will be removed from pandas in a future version. Use
    12049 pandas.concat instead. 
    12050 self.df = self.df.append(df_add, ignore_index=True) 
    12051 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12052 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12053 is deprecated and will be removed from pandas in a future version. Use
    12054 pandas.concat instead. 
    12055 self.df = self.df.append(df_add, ignore_index=True) 
    12056 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12057 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12058 is deprecated and will be removed from pandas in a future version. Use
    12059 pandas.concat instead. 
    12060 self.df = self.df.append(df_add, ignore_index=True) 
    12061 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12062 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12063 is deprecated and will be removed from pandas in a future version. Use
    12064 pandas.concat instead. 
    12065 self.df = self.df.append(df_add, ignore_index=True) 
    12066 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12067 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12068 is deprecated and will be removed from pandas in a future version. Use
    12069 pandas.concat instead. 
    12070 self.df = self.df.append(df_add, ignore_index=True) 
    12071 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12072 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12073 is deprecated and will be removed from pandas in a future version. Use
    12074 pandas.concat instead. 
    12075 self.df = self.df.append(df_add, ignore_index=True) 
    12076 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12077 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12078 is deprecated and will be removed from pandas in a future version. Use
    12079 pandas.concat instead. 
    12080 self.df = self.df.append(df_add, ignore_index=True) 
    12081 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12082 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12083 is deprecated and will be removed from pandas in a future version. Use
    12084 pandas.concat instead. 
    12085 self.df = self.df.append(df_add, ignore_index=True) 
    12086 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12087 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12088 is deprecated and will be removed from pandas in a future version. Use
    12089 pandas.concat instead. 
    12090 self.df = self.df.append(df_add, ignore_index=True) 
    12091 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12092 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12093 is deprecated and will be removed from pandas in a future version. Use
    12094 pandas.concat instead. 
    12095 self.df = self.df.append(df_add, ignore_index=True) 
    12096 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12097 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12098 is deprecated and will be removed from pandas in a future version. Use
    12099 pandas.concat instead. 
    12100 self.df = self.df.append(df_add, ignore_index=True) 
    12101 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12102 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12103 is deprecated and will be removed from pandas in a future version. Use
    12104 pandas.concat instead. 
    12105 self.df = self.df.append(df_add, ignore_index=True) 
    12106 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12107 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12108 is deprecated and will be removed from pandas in a future version. Use
    12109 pandas.concat instead. 
    12110 self.df = self.df.append(df_add, ignore_index=True) 
    12111 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12112 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12113 is deprecated and will be removed from pandas in a future version. Use
    12114 pandas.concat instead. 
    12115 self.df = self.df.append(df_add, ignore_index=True) 
    12116 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12117 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12118 is deprecated and will be removed from pandas in a future version. Use
    12119 pandas.concat instead. 
    12120 self.df = self.df.append(df_add, ignore_index=True) 
    12121 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12122 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12123 is deprecated and will be removed from pandas in a future version. Use
    12124 pandas.concat instead. 
    12125 self.df = self.df.append(df_add, ignore_index=True) 
    12126 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12127 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12128 is deprecated and will be removed from pandas in a future version. Use
    12129 pandas.concat instead. 
    12130 self.df = self.df.append(df_add, ignore_index=True) 
    12131 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12132 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12133 is deprecated and will be removed from pandas in a future version. Use
    12134 pandas.concat instead. 
    12135 self.df = self.df.append(df_add, ignore_index=True) 
    12136 Unique peptide pairs: 111 out of 251 
    12137 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12138 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12139 is deprecated and will be removed from pandas in a future version. Use
    12140 pandas.concat instead. 
    12141 self.df = self.df.append(df_add, ignore_index=True) 
    12142 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12143 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12144 is deprecated and will be removed from pandas in a future version. Use
    12145 pandas.concat instead. 
    12146 self.df = self.df.append(df_add, ignore_index=True) 
    12147 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12148 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12149 is deprecated and will be removed from pandas in a future version. Use
    12150 pandas.concat instead. 
    12151 self.df = self.df.append(df_add, ignore_index=True) 
    12152 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12153 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12154 is deprecated and will be removed from pandas in a future version. Use
    12155 pandas.concat instead. 
    12156 self.df = self.df.append(df_add, ignore_index=True) 
    12157 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12158 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12159 is deprecated and will be removed from pandas in a future version. Use
    12160 pandas.concat instead. 
    12161 self.df = self.df.append(df_add, ignore_index=True) 
    12162 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12163 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12164 is deprecated and will be removed from pandas in a future version. Use
    12165 pandas.concat instead. 
    12166 self.df = self.df.append(df_add, ignore_index=True) 
    12167 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12168 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12169 is deprecated and will be removed from pandas in a future version. Use
    12170 pandas.concat instead. 
    12171 self.df = self.df.append(df_add, ignore_index=True) 
    12172 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12173 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12174 is deprecated and will be removed from pandas in a future version. Use
    12175 pandas.concat instead. 
    12176 self.df = self.df.append(df_add, ignore_index=True) 
    12177 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12178 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12179 is deprecated and will be removed from pandas in a future version. Use
    12180 pandas.concat instead. 
    12181 self.df = self.df.append(df_add, ignore_index=True) 
    12182 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12183 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12184 is deprecated and will be removed from pandas in a future version. Use
    12185 pandas.concat instead. 
    12186 self.df = self.df.append(df_add, ignore_index=True) 
    12187 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12188 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12189 is deprecated and will be removed from pandas in a future version. Use
    12190 pandas.concat instead. 
    12191 self.df = self.df.append(df_add, ignore_index=True) 
    12192 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12193 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12194 is deprecated and will be removed from pandas in a future version. Use
    12195 pandas.concat instead. 
    12196 self.df = self.df.append(df_add, ignore_index=True) 
    12197 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12198 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12199 is deprecated and will be removed from pandas in a future version. Use
    12200 pandas.concat instead. 
    12201 self.df = self.df.append(df_add, ignore_index=True) 
    12202 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12203 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12204 is deprecated and will be removed from pandas in a future version. Use
    12205 pandas.concat instead. 
    12206 self.df = self.df.append(df_add, ignore_index=True) 
    12207 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12208 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12209 is deprecated and will be removed from pandas in a future version. Use
    12210 pandas.concat instead. 
    12211 self.df = self.df.append(df_add, ignore_index=True) 
    12212 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12213 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12214 is deprecated and will be removed from pandas in a future version. Use
    12215 pandas.concat instead. 
    12216 self.df = self.df.append(df_add, ignore_index=True) 
    12217 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12218 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12219 is deprecated and will be removed from pandas in a future version. Use
    12220 pandas.concat instead. 
    12221 self.df = self.df.append(df_add, ignore_index=True) 
    12222 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12223 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12224 is deprecated and will be removed from pandas in a future version. Use
    12225 pandas.concat instead. 
    12226 self.df = self.df.append(df_add, ignore_index=True) 
    12227 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12228 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12229 is deprecated and will be removed from pandas in a future version. Use
    12230 pandas.concat instead. 
    12231 self.df = self.df.append(df_add, ignore_index=True) 
    12232 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12233 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12234 is deprecated and will be removed from pandas in a future version. Use
    12235 pandas.concat instead. 
    12236 self.df = self.df.append(df_add, ignore_index=True) 
    12237 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12238 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12239 is deprecated and will be removed from pandas in a future version. Use
    12240 pandas.concat instead. 
    12241 self.df = self.df.append(df_add, ignore_index=True) 
    12242 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12243 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12244 is deprecated and will be removed from pandas in a future version. Use
    12245 pandas.concat instead. 
    12246 self.df = self.df.append(df_add, ignore_index=True) 
    12247 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12248 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12249 is deprecated and will be removed from pandas in a future version. Use
    12250 pandas.concat instead. 
    12251 self.df = self.df.append(df_add, ignore_index=True) 
    12252 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12253 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12254 is deprecated and will be removed from pandas in a future version. Use
    12255 pandas.concat instead. 
    12256 self.df = self.df.append(df_add, ignore_index=True) 
    12257 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12258 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12259 is deprecated and will be removed from pandas in a future version. Use
    12260 pandas.concat instead. 
    12261 self.df = self.df.append(df_add, ignore_index=True) 
    12262 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12263 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12264 is deprecated and will be removed from pandas in a future version. Use
    12265 pandas.concat instead. 
    12266 self.df = self.df.append(df_add, ignore_index=True) 
    12267 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12268 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12269 is deprecated and will be removed from pandas in a future version. Use
    12270 pandas.concat instead. 
    12271 self.df = self.df.append(df_add, ignore_index=True) 
    12272 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12273 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12274 is deprecated and will be removed from pandas in a future version. Use
    12275 pandas.concat instead. 
    12276 self.df = self.df.append(df_add, ignore_index=True) 
    12277 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12278 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12279 is deprecated and will be removed from pandas in a future version. Use
    12280 pandas.concat instead. 
    12281 self.df = self.df.append(df_add, ignore_index=True) 
    12282 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12283 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12284 is deprecated and will be removed from pandas in a future version. Use
    12285 pandas.concat instead. 
    12286 self.df = self.df.append(df_add, ignore_index=True) 
    12287 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12288 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12289 is deprecated and will be removed from pandas in a future version. Use
    12290 pandas.concat instead. 
    12291 self.df = self.df.append(df_add, ignore_index=True) 
    12292 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12293 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12294 is deprecated and will be removed from pandas in a future version. Use
    12295 pandas.concat instead. 
    12296 self.df = self.df.append(df_add, ignore_index=True) 
    12297 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12298 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12299 is deprecated and will be removed from pandas in a future version. Use
    12300 pandas.concat instead. 
    12301 self.df = self.df.append(df_add, ignore_index=True) 
    12302 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12303 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12304 is deprecated and will be removed from pandas in a future version. Use
    12305 pandas.concat instead. 
    12306 self.df = self.df.append(df_add, ignore_index=True) 
    12307 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12308 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12309 is deprecated and will be removed from pandas in a future version. Use
    12310 pandas.concat instead. 
    12311 self.df = self.df.append(df_add, ignore_index=True) 
    12312 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12313 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12314 is deprecated and will be removed from pandas in a future version. Use
    12315 pandas.concat instead. 
    12316 self.df = self.df.append(df_add, ignore_index=True) 
    12317 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12318 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12319 is deprecated and will be removed from pandas in a future version. Use
    12320 pandas.concat instead. 
    12321 self.df = self.df.append(df_add, ignore_index=True) 
    12322 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12323 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12324 is deprecated and will be removed from pandas in a future version. Use
    12325 pandas.concat instead. 
    12326 self.df = self.df.append(df_add, ignore_index=True) 
    12327 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12328 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12329 is deprecated and will be removed from pandas in a future version. Use
    12330 pandas.concat instead. 
    12331 self.df = self.df.append(df_add, ignore_index=True) 
    12332 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12333 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12334 is deprecated and will be removed from pandas in a future version. Use
    12335 pandas.concat instead. 
    12336 self.df = self.df.append(df_add, ignore_index=True) 
    12337 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12338 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12339 is deprecated and will be removed from pandas in a future version. Use
    12340 pandas.concat instead. 
    12341 self.df = self.df.append(df_add, ignore_index=True) 
    12342 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12343 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12344 is deprecated and will be removed from pandas in a future version. Use
    12345 pandas.concat instead. 
    12346 self.df = self.df.append(df_add, ignore_index=True) 
    12347 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12348 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12349 is deprecated and will be removed from pandas in a future version. Use
    12350 pandas.concat instead. 
    12351 self.df = self.df.append(df_add, ignore_index=True) 
    12352 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12353 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12354 is deprecated and will be removed from pandas in a future version. Use
    12355 pandas.concat instead. 
    12356 self.df = self.df.append(df_add, ignore_index=True) 
    12357 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12358 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12359 is deprecated and will be removed from pandas in a future version. Use
    12360 pandas.concat instead. 
    12361 self.df = self.df.append(df_add, ignore_index=True) 
    12362 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12363 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12364 is deprecated and will be removed from pandas in a future version. Use
    12365 pandas.concat instead. 
    12366 self.df = self.df.append(df_add, ignore_index=True) 
    12367 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12368 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12369 is deprecated and will be removed from pandas in a future version. Use
    12370 pandas.concat instead. 
    12371 self.df = self.df.append(df_add, ignore_index=True) 
    12372 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12373 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12374 is deprecated and will be removed from pandas in a future version. Use
    12375 pandas.concat instead. 
    12376 self.df = self.df.append(df_add, ignore_index=True) 
    12377 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12378 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12379 is deprecated and will be removed from pandas in a future version. Use
    12380 pandas.concat instead. 
    12381 self.df = self.df.append(df_add, ignore_index=True) 
    12382 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12383 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12384 is deprecated and will be removed from pandas in a future version. Use
    12385 pandas.concat instead. 
    12386 self.df = self.df.append(df_add, ignore_index=True) 
    12387 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12388 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12389 is deprecated and will be removed from pandas in a future version. Use
    12390 pandas.concat instead. 
    12391 self.df = self.df.append(df_add, ignore_index=True) 
    12392 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12393 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12394 is deprecated and will be removed from pandas in a future version. Use
    12395 pandas.concat instead. 
    12396 self.df = self.df.append(df_add, ignore_index=True) 
    12397 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12398 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12399 is deprecated and will be removed from pandas in a future version. Use
    12400 pandas.concat instead. 
    12401 self.df = self.df.append(df_add, ignore_index=True) 
    12402 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12403 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12404 is deprecated and will be removed from pandas in a future version. Use
    12405 pandas.concat instead. 
    12406 self.df = self.df.append(df_add, ignore_index=True) 
    12407 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12408 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12409 is deprecated and will be removed from pandas in a future version. Use
    12410 pandas.concat instead. 
    12411 self.df = self.df.append(df_add, ignore_index=True) 
    12412 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12413 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12414 is deprecated and will be removed from pandas in a future version. Use
    12415 pandas.concat instead. 
    12416 self.df = self.df.append(df_add, ignore_index=True) 
    12417 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12418 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12419 is deprecated and will be removed from pandas in a future version. Use
    12420 pandas.concat instead. 
    12421 self.df = self.df.append(df_add, ignore_index=True) 
    12422 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12423 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12424 is deprecated and will be removed from pandas in a future version. Use
    12425 pandas.concat instead. 
    12426 self.df = self.df.append(df_add, ignore_index=True) 
    12427 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12428 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12429 is deprecated and will be removed from pandas in a future version. Use
    12430 pandas.concat instead. 
    12431 self.df = self.df.append(df_add, ignore_index=True) 
    12432 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12433 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12434 is deprecated and will be removed from pandas in a future version. Use
    12435 pandas.concat instead. 
    12436 self.df = self.df.append(df_add, ignore_index=True) 
    12437 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12438 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12439 is deprecated and will be removed from pandas in a future version. Use
    12440 pandas.concat instead. 
    12441 self.df = self.df.append(df_add, ignore_index=True) 
    12442 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12443 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12444 is deprecated and will be removed from pandas in a future version. Use
    12445 pandas.concat instead. 
    12446 self.df = self.df.append(df_add, ignore_index=True) 
    12447 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12448 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12449 is deprecated and will be removed from pandas in a future version. Use
    12450 pandas.concat instead. 
    12451 self.df = self.df.append(df_add, ignore_index=True) 
    12452 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12453 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12454 is deprecated and will be removed from pandas in a future version. Use
    12455 pandas.concat instead. 
    12456 self.df = self.df.append(df_add, ignore_index=True) 
    12457 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12458 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12459 is deprecated and will be removed from pandas in a future version. Use
    12460 pandas.concat instead. 
    12461 self.df = self.df.append(df_add, ignore_index=True) 
    12462 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12463 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12464 is deprecated and will be removed from pandas in a future version. Use
    12465 pandas.concat instead. 
    12466 self.df = self.df.append(df_add, ignore_index=True) 
    12467 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12468 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12469 is deprecated and will be removed from pandas in a future version. Use
    12470 pandas.concat instead. 
    12471 self.df = self.df.append(df_add, ignore_index=True) 
    12472 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12473 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12474 is deprecated and will be removed from pandas in a future version. Use
    12475 pandas.concat instead. 
    12476 self.df = self.df.append(df_add, ignore_index=True) 
    12477 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12478 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12479 is deprecated and will be removed from pandas in a future version. Use
    12480 pandas.concat instead. 
    12481 self.df = self.df.append(df_add, ignore_index=True) 
    12482 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12483 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12484 is deprecated and will be removed from pandas in a future version. Use
    12485 pandas.concat instead. 
    12486 self.df = self.df.append(df_add, ignore_index=True) 
    12487 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12488 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12489 is deprecated and will be removed from pandas in a future version. Use
    12490 pandas.concat instead. 
    12491 self.df = self.df.append(df_add, ignore_index=True) 
    12492 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12493 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12494 is deprecated and will be removed from pandas in a future version. Use
    12495 pandas.concat instead. 
    12496 self.df = self.df.append(df_add, ignore_index=True) 
    12497 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12498 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12499 is deprecated and will be removed from pandas in a future version. Use
    12500 pandas.concat instead. 
    12501 self.df = self.df.append(df_add, ignore_index=True) 
    12502 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12503 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12504 is deprecated and will be removed from pandas in a future version. Use
    12505 pandas.concat instead. 
    12506 self.df = self.df.append(df_add, ignore_index=True) 
    12507 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12508 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12509 is deprecated and will be removed from pandas in a future version. Use
    12510 pandas.concat instead. 
    12511 self.df = self.df.append(df_add, ignore_index=True) 
    12512 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12513 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12514 is deprecated and will be removed from pandas in a future version. Use
    12515 pandas.concat instead. 
    12516 self.df = self.df.append(df_add, ignore_index=True) 
    12517 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12518 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12519 is deprecated and will be removed from pandas in a future version. Use
    12520 pandas.concat instead. 
    12521 self.df = self.df.append(df_add, ignore_index=True) 
    12522 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12523 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12524 is deprecated and will be removed from pandas in a future version. Use
    12525 pandas.concat instead. 
    12526 self.df = self.df.append(df_add, ignore_index=True) 
    12527 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12528 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12529 is deprecated and will be removed from pandas in a future version. Use
    12530 pandas.concat instead. 
    12531 self.df = self.df.append(df_add, ignore_index=True) 
    12532 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12533 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12534 is deprecated and will be removed from pandas in a future version. Use
    12535 pandas.concat instead. 
    12536 self.df = self.df.append(df_add, ignore_index=True) 
    12537 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12538 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12539 is deprecated and will be removed from pandas in a future version. Use
    12540 pandas.concat instead. 
    12541 self.df = self.df.append(df_add, ignore_index=True) 
    12542 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12543 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12544 is deprecated and will be removed from pandas in a future version. Use
    12545 pandas.concat instead. 
    12546 self.df = self.df.append(df_add, ignore_index=True) 
    12547 Unique peptide pairs with pseudobonds: 29 
    12548 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12549 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12550 is deprecated and will be removed from pandas in a future version. Use
    12551 pandas.concat instead. 
    12552 self.df = self.df.append(df_add, ignore_index=True) 
    12553 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12554 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12555 is deprecated and will be removed from pandas in a future version. Use
    12556 pandas.concat instead. 
    12557 self.df = self.df.append(df_add, ignore_index=True) 
    12558 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12559 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12560 is deprecated and will be removed from pandas in a future version. Use
    12561 pandas.concat instead. 
    12562 self.df = self.df.append(df_add, ignore_index=True) 
    12563 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12564 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12565 is deprecated and will be removed from pandas in a future version. Use
    12566 pandas.concat instead. 
    12567 self.df = self.df.append(df_add, ignore_index=True) 
    12568 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12569 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12570 is deprecated and will be removed from pandas in a future version. Use
    12571 pandas.concat instead. 
    12572 self.df = self.df.append(df_add, ignore_index=True) 
    12573 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12574 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12575 is deprecated and will be removed from pandas in a future version. Use
    12576 pandas.concat instead. 
    12577 self.df = self.df.append(df_add, ignore_index=True) 
    12578 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12579 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12580 is deprecated and will be removed from pandas in a future version. Use
    12581 pandas.concat instead. 
    12582 self.df = self.df.append(df_add, ignore_index=True) 
    12583 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12584 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12585 is deprecated and will be removed from pandas in a future version. Use
    12586 pandas.concat instead. 
    12587 self.df = self.df.append(df_add, ignore_index=True) 
    12588 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12589 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12590 is deprecated and will be removed from pandas in a future version. Use
    12591 pandas.concat instead. 
    12592 self.df = self.df.append(df_add, ignore_index=True) 
    12593 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12594 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12595 is deprecated and will be removed from pandas in a future version. Use
    12596 pandas.concat instead. 
    12597 self.df = self.df.append(df_add, ignore_index=True) 
    12598 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12599 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12600 is deprecated and will be removed from pandas in a future version. Use
    12601 pandas.concat instead. 
    12602 self.df = self.df.append(df_add, ignore_index=True) 
    12603 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12604 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12605 is deprecated and will be removed from pandas in a future version. Use
    12606 pandas.concat instead. 
    12607 self.df = self.df.append(df_add, ignore_index=True) 
    12608 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12609 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12610 is deprecated and will be removed from pandas in a future version. Use
    12611 pandas.concat instead. 
    12612 self.df = self.df.append(df_add, ignore_index=True) 
    12613 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12614 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12615 is deprecated and will be removed from pandas in a future version. Use
    12616 pandas.concat instead. 
    12617 self.df = self.df.append(df_add, ignore_index=True) 
    12618 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12619 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12620 is deprecated and will be removed from pandas in a future version. Use
    12621 pandas.concat instead. 
    12622 self.df = self.df.append(df_add, ignore_index=True) 
    12623 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12624 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12625 is deprecated and will be removed from pandas in a future version. Use
    12626 pandas.concat instead. 
    12627 self.df = self.df.append(df_add, ignore_index=True) 
    12628 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12629 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12630 is deprecated and will be removed from pandas in a future version. Use
    12631 pandas.concat instead. 
    12632 self.df = self.df.append(df_add, ignore_index=True) 
    12633 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12634 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12635 is deprecated and will be removed from pandas in a future version. Use
    12636 pandas.concat instead. 
    12637 self.df = self.df.append(df_add, ignore_index=True) 
    12638 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12639 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12640 is deprecated and will be removed from pandas in a future version. Use
    12641 pandas.concat instead. 
    12642 self.df = self.df.append(df_add, ignore_index=True) 
    12643 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12644 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12645 is deprecated and will be removed from pandas in a future version. Use
    12646 pandas.concat instead. 
    12647 self.df = self.df.append(df_add, ignore_index=True) 
    12648 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12649 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12650 is deprecated and will be removed from pandas in a future version. Use
    12651 pandas.concat instead. 
    12652 self.df = self.df.append(df_add, ignore_index=True) 
    12653 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12654 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12655 is deprecated and will be removed from pandas in a future version. Use
    12656 pandas.concat instead. 
    12657 self.df = self.df.append(df_add, ignore_index=True) 
    12658 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12659 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12660 is deprecated and will be removed from pandas in a future version. Use
    12661 pandas.concat instead. 
    12662 self.df = self.df.append(df_add, ignore_index=True) 
    12663 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12664 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12665 is deprecated and will be removed from pandas in a future version. Use
    12666 pandas.concat instead. 
    12667 self.df = self.df.append(df_add, ignore_index=True) 
    12668 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12669 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12670 is deprecated and will be removed from pandas in a future version. Use
    12671 pandas.concat instead. 
    12672 self.df = self.df.append(df_add, ignore_index=True) 
    12673 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12674 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12675 is deprecated and will be removed from pandas in a future version. Use
    12676 pandas.concat instead. 
    12677 self.df = self.df.append(df_add, ignore_index=True) 
    12678 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12679 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12680 is deprecated and will be removed from pandas in a future version. Use
    12681 pandas.concat instead. 
    12682 self.df = self.df.append(df_add, ignore_index=True) 
    12683 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12684 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12685 is deprecated and will be removed from pandas in a future version. Use
    12686 pandas.concat instead. 
    12687 self.df = self.df.append(df_add, ignore_index=True) 
    12688 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12689 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12690 is deprecated and will be removed from pandas in a future version. Use
    12691 pandas.concat instead. 
    12692 self.df = self.df.append(df_add, ignore_index=True) 
    12693 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12694 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12695 is deprecated and will be removed from pandas in a future version. Use
    12696 pandas.concat instead. 
    12697 self.df = self.df.append(df_add, ignore_index=True) 
    12698 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12699 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12700 is deprecated and will be removed from pandas in a future version. Use
    12701 pandas.concat instead. 
    12702 self.df = self.df.append(df_add, ignore_index=True) 
    12703 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12704 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12705 is deprecated and will be removed from pandas in a future version. Use
    12706 pandas.concat instead. 
    12707 self.df = self.df.append(df_add, ignore_index=True) 
    12708 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12709 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12710 is deprecated and will be removed from pandas in a future version. Use
    12711 pandas.concat instead. 
    12712 self.df = self.df.append(df_add, ignore_index=True) 
    12713 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12714 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12715 is deprecated and will be removed from pandas in a future version. Use
    12716 pandas.concat instead. 
    12717 self.df = self.df.append(df_add, ignore_index=True) 
    12718 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12719 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12720 is deprecated and will be removed from pandas in a future version. Use
    12721 pandas.concat instead. 
    12722 self.df = self.df.append(df_add, ignore_index=True) 
    12723 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12724 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12725 is deprecated and will be removed from pandas in a future version. Use
    12726 pandas.concat instead. 
    12727 self.df = self.df.append(df_add, ignore_index=True) 
    12728 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12729 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12730 is deprecated and will be removed from pandas in a future version. Use
    12731 pandas.concat instead. 
    12732 self.df = self.df.append(df_add, ignore_index=True) 
    12733 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12734 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12735 is deprecated and will be removed from pandas in a future version. Use
    12736 pandas.concat instead. 
    12737 self.df = self.df.append(df_add, ignore_index=True) 
    12738 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12739 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12740 is deprecated and will be removed from pandas in a future version. Use
    12741 pandas.concat instead. 
    12742 self.df = self.df.append(df_add, ignore_index=True) 
    12743 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12744 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12745 is deprecated and will be removed from pandas in a future version. Use
    12746 pandas.concat instead. 
    12747 self.df = self.df.append(df_add, ignore_index=True) 
    12748 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12749 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12750 is deprecated and will be removed from pandas in a future version. Use
    12751 pandas.concat instead. 
    12752 self.df = self.df.append(df_add, ignore_index=True) 
    12753 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12754 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12755 is deprecated and will be removed from pandas in a future version. Use
    12756 pandas.concat instead. 
    12757 self.df = self.df.append(df_add, ignore_index=True) 
    12758 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12759 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12760 is deprecated and will be removed from pandas in a future version. Use
    12761 pandas.concat instead. 
    12762 self.df = self.df.append(df_add, ignore_index=True) 
    12763 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12764 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12765 is deprecated and will be removed from pandas in a future version. Use
    12766 pandas.concat instead. 
    12767 self.df = self.df.append(df_add, ignore_index=True) 
    12768 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12769 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12770 is deprecated and will be removed from pandas in a future version. Use
    12771 pandas.concat instead. 
    12772 self.df = self.df.append(df_add, ignore_index=True) 
    12773 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12774 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12775 is deprecated and will be removed from pandas in a future version. Use
    12776 pandas.concat instead. 
    12777 self.df = self.df.append(df_add, ignore_index=True) 
    12778 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12779 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12780 is deprecated and will be removed from pandas in a future version. Use
    12781 pandas.concat instead. 
    12782 self.df = self.df.append(df_add, ignore_index=True) 
    12783 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12784 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12785 is deprecated and will be removed from pandas in a future version. Use
    12786 pandas.concat instead. 
    12787 self.df = self.df.append(df_add, ignore_index=True) 
    12788 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12789 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12790 is deprecated and will be removed from pandas in a future version. Use
    12791 pandas.concat instead. 
    12792 self.df = self.df.append(df_add, ignore_index=True) 
    12793 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12794 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12795 is deprecated and will be removed from pandas in a future version. Use
    12796 pandas.concat instead. 
    12797 self.df = self.df.append(df_add, ignore_index=True) 
    12798 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12799 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12800 is deprecated and will be removed from pandas in a future version. Use
    12801 pandas.concat instead. 
    12802 self.df = self.df.append(df_add, ignore_index=True) 
    12803 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12804 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12805 is deprecated and will be removed from pandas in a future version. Use
    12806 pandas.concat instead. 
    12807 self.df = self.df.append(df_add, ignore_index=True) 
    12808 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12809 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12810 is deprecated and will be removed from pandas in a future version. Use
    12811 pandas.concat instead. 
    12812 self.df = self.df.append(df_add, ignore_index=True) 
    12813 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12814 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12815 is deprecated and will be removed from pandas in a future version. Use
    12816 pandas.concat instead. 
    12817 self.df = self.df.append(df_add, ignore_index=True) 
    12818 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12819 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12820 is deprecated and will be removed from pandas in a future version. Use
    12821 pandas.concat instead. 
    12822 self.df = self.df.append(df_add, ignore_index=True) 
    12823 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12824 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12825 is deprecated and will be removed from pandas in a future version. Use
    12826 pandas.concat instead. 
    12827 self.df = self.df.append(df_add, ignore_index=True) 
    12828 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12829 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12830 is deprecated and will be removed from pandas in a future version. Use
    12831 pandas.concat instead. 
    12832 self.df = self.df.append(df_add, ignore_index=True) 
    12833 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12834 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12835 is deprecated and will be removed from pandas in a future version. Use
    12836 pandas.concat instead. 
    12837 self.df = self.df.append(df_add, ignore_index=True) 
    12838 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12839 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12840 is deprecated and will be removed from pandas in a future version. Use
    12841 pandas.concat instead. 
    12842 self.df = self.df.append(df_add, ignore_index=True) 
    12843 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12844 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12845 is deprecated and will be removed from pandas in a future version. Use
    12846 pandas.concat instead. 
    12847 self.df = self.df.append(df_add, ignore_index=True) 
    12848 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12849 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12850 is deprecated and will be removed from pandas in a future version. Use
    12851 pandas.concat instead. 
    12852 self.df = self.df.append(df_add, ignore_index=True) 
    12853 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12854 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12855 is deprecated and will be removed from pandas in a future version. Use
    12856 pandas.concat instead. 
    12857 self.df = self.df.append(df_add, ignore_index=True) 
    12858 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12859 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12860 is deprecated and will be removed from pandas in a future version. Use
    12861 pandas.concat instead. 
    12862 self.df = self.df.append(df_add, ignore_index=True) 
    12863 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12864 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12865 is deprecated and will be removed from pandas in a future version. Use
    12866 pandas.concat instead. 
    12867 self.df = self.df.append(df_add, ignore_index=True) 
    12868 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12869 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12870 is deprecated and will be removed from pandas in a future version. Use
    12871 pandas.concat instead. 
    12872 self.df = self.df.append(df_add, ignore_index=True) 
    12873 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12874 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12875 is deprecated and will be removed from pandas in a future version. Use
    12876 pandas.concat instead. 
    12877 self.df = self.df.append(df_add, ignore_index=True) 
    12878 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12879 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12880 is deprecated and will be removed from pandas in a future version. Use
    12881 pandas.concat instead. 
    12882 self.df = self.df.append(df_add, ignore_index=True) 
    12883 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12884 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12885 is deprecated and will be removed from pandas in a future version. Use
    12886 pandas.concat instead. 
    12887 self.df = self.df.append(df_add, ignore_index=True) 
    12888 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12889 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12890 is deprecated and will be removed from pandas in a future version. Use
    12891 pandas.concat instead. 
    12892 self.df = self.df.append(df_add, ignore_index=True) 
    12893 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12894 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12895 is deprecated and will be removed from pandas in a future version. Use
    12896 pandas.concat instead. 
    12897 self.df = self.df.append(df_add, ignore_index=True) 
    12898 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12899 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12900 is deprecated and will be removed from pandas in a future version. Use
    12901 pandas.concat instead. 
    12902 self.df = self.df.append(df_add, ignore_index=True) 
    12903 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12904 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12905 is deprecated and will be removed from pandas in a future version. Use
    12906 pandas.concat instead. 
    12907 self.df = self.df.append(df_add, ignore_index=True) 
    12908 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12909 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12910 is deprecated and will be removed from pandas in a future version. Use
    12911 pandas.concat instead. 
    12912 self.df = self.df.append(df_add, ignore_index=True) 
    12913 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12914 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12915 is deprecated and will be removed from pandas in a future version. Use
    12916 pandas.concat instead. 
    12917 self.df = self.df.append(df_add, ignore_index=True) 
    12918 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12919 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12920 is deprecated and will be removed from pandas in a future version. Use
    12921 pandas.concat instead. 
    12922 self.df = self.df.append(df_add, ignore_index=True) 
    12923 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    12924 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    12925 is deprecated and will be removed from pandas in a future version. Use
    12926 pandas.concat instead. 
    12927 self.df = self.df.append(df_add, ignore_index=True) 
    12928 Pseudobonds are stored in M:/_Steve021/Matrigel/New docking- for
    12929 commentary/20210406_EX2_UM3_Steve021_SA_MG3_combined-consensus-all-files_no
    12930 duplicates_1,2,4.pb 
    12931 Mapping information is stored in M:/_Steve021/Matrigel/New docking- for
    12932 commentary/20210406_EX2_UM3_Steve021_SA_MG3_combined-consensus-all-files_no
    12933 duplicates_1,2,4.tsv 
    12934 
    12935 > hide #10 models
    12936 
    12937 > hide #11 models
    12938 
    12939 > hide #12 models
    12940 
    12941 > volume #5 level 6.917
    12942 
    12943 Please select pseudobonds 
    12944 
    12945 > close #1-4,6-8,10-13#5
    12946 
    12947 > open "M:/_Steve021/Matrigel/New docking- for
    12948 > commentary/5mc9_v2-pdbtools.pdb"
    12949 
    12950 Chain information for 5mc9_v2-pdbtools.pdb #1 
    12951 --- 
    12952 Chain | Description 
    12953 A | No description available 
    12954 B | No description available 
    12955 C | No description available 
    12956  
    12957 
    12958 > open "M:/_Steve021/Matrigel/New docking- for
    12959 > commentary/2jd4_v2-pdbtools.pdb"
    12960 
    12961 Chain information for 2jd4_v2-pdbtools.pdb #2 
    12962 --- 
    12963 Chain | Description 
    12964 A | No description available 
    12965  
    12966 
    12967 > ui mousemode right "translate selected models"
    12968 
    12969 > select #2
    12970 
    12971 3054 atoms, 2946 bonds, 540 residues, 1 model selected 
    12972 
    12973 > view matrix models #2,1,0,0,9.7631,0,1,0,-21.304,0,0,1,41.945
    12974 
    12975 > view matrix models #2,1,0,0,-25.456,0,1,0,-67.408,0,0,1,-13.925
    12976 
    12977 > view matrix models #2,1,0,0,-34.539,0,1,0,-74.598,0,0,1,-15.847
    12978 
    12979 > view matrix models #2,1,0,0,-48.339,0,1,0,-81.785,0,0,1,-19.153
    12980 
    12981 > ui mousemode right "rotate selected models"
    12982 
    12983 > view matrix models
    12984 > #2,0.89491,0.28567,0.34282,-55.045,-0.44054,0.44313,0.78075,-56.913,0.071121,-0.84973,0.52241,5.2097
    12985 
    12986 > view matrix models
    12987 > #2,0.90978,0.32719,0.25544,-56.606,-0.39718,0.50733,0.76476,-59.616,0.12063,-0.79722,0.59151,2.7986
    12988 
    12989 > ui mousemode right "translate selected models"
    12990 
    12991 > view matrix models
    12992 > #2,0.90978,0.32719,0.25544,-42.669,-0.39718,0.50733,0.76476,-51.073,0.12063,-0.79722,0.59151,-1.9144
    12993 
    12994 > view matrix models
    12995 > #2,0.90978,0.32719,0.25544,-41.736,-0.39718,0.50733,0.76476,-56.868,0.12063,-0.79722,0.59151,-0.44843
    12996 
    12997 > view matrix models
    12998 > #2,0.90978,0.32719,0.25544,-35.869,-0.39718,0.50733,0.76476,-51.602,0.12063,-0.79722,0.59151,-3.1988
    12999 
    13000 > ui mousemode right "rotate selected models"
    13001 
    13002 > view matrix models
    13003 > #2,0.8636,-0.010803,0.50406,-24.682,-0.46238,0.3816,0.80037,-46.644,-0.201,-0.92426,0.32456,6.0497
    13004 
    13005 > view matrix models
    13006 > #2,0.89351,0.1409,0.42637,-29.844,-0.44222,0.44099,0.781,-48.805,-0.077981,-0.88638,0.45634,2.8525
    13007 
    13008 > open "M:/_Steve021/Matrigel/New docking- for
    13009 > commentary/results_jiH_3LUKOOl+/accessible_interaction_space.mrc"
    13010 
    13011 Opened accessible_interaction_space.mrc as #3, grid size 90,108,96, pixel 2,
    13012 shown at level 7, step 1, values int16 
    13013 
    13014 > ui mousemode right "translate selected models"
    13015 
    13016 > view matrix models
    13017 > #2,0.89351,0.1409,0.42637,-16.765,-0.44222,0.44099,0.781,-44.993,-0.077981,-0.88638,0.45634,11.558
    13018 
    13019 > view matrix models
    13020 > #2,0.89351,0.1409,0.42637,-26.013,-0.44222,0.44099,0.781,-47.244,-0.077981,-0.88638,0.45634,16.231
    13021 
    13022 > view matrix models
    13023 > #2,0.89351,0.1409,0.42637,-31.382,-0.44222,0.44099,0.781,-53.381,-0.077981,-0.88638,0.45634,18.054
    13024 
    13025 > ui mousemode right "rotate selected models"
    13026 
    13027 > view matrix models
    13028 > #2,0.73536,-0.45921,0.49838,-10.395,-0.41293,0.27951,0.86681,-48.934,-0.53735,-0.84321,0.015917,24.408
    13029 
    13030 > ui mousemode right "translate selected models"
    13031 
    13032 > view matrix models
    13033 > #2,0.73536,-0.45921,0.49838,-15.393,-0.41293,0.27951,0.86681,-53.342,-0.53735,-0.84321,0.015917,32.692
    13034 
    13035 > ui tool show XMAS
    13036 
    13037 > view matrix models
    13038 > #2,0.73536,-0.45921,0.49838,-4.2937,-0.41293,0.27951,0.86681,-54.292,-0.53735,-0.84321,0.015917,37.599
    13039 
    13040 > ui mousemode right "rotate selected models"
    13041 
    13042 > view matrix models
    13043 > #2,0.5642,-0.70434,0.43079,6.0595,0.21391,0.62866,0.74769,-75.721,-0.79744,-0.3297,0.50536,26.703
    13044 
    13045 > view matrix models
    13046 > #2,0.33973,-0.58809,0.73398,6.5308,-0.10446,0.75198,0.65086,-74.052,-0.9347,-0.29779,0.19404,27.934
    13047 
    13048 > ui mousemode right "translate selected models"
    13049 
    13050 > view matrix models
    13051 > #2,0.33973,-0.58809,0.73398,14.696,-0.10446,0.75198,0.65086,-73.399,-0.9347,-0.29779,0.19404,28.234
    13052 
    13053 > view matrix models
    13054 > #2,0.33973,-0.58809,0.73398,10.414,-0.10446,0.75198,0.65086,-65.279,-0.9347,-0.29779,0.19404,35.293
    13055 
    13056 > view matrix models
    13057 > #2,0.33973,-0.58809,0.73398,10.999,-0.10446,0.75198,0.65086,-61.545,-0.9347,-0.29779,0.19404,34.405
    13058 
    13059  
    13060 Peptide pair mapping of PD evidence file: M:/_Steve021/Matrigel/New docking-
    13061 for commentary/20210406_EX2_UM3_Steve021_SA_MG3_replicate1-combined.xlsx 
    13062 Unique peptide pairs: 117 out of 117 
    13063 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13064 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13065 is deprecated and will be removed from pandas in a future version. Use
    13066 pandas.concat instead. 
    13067 self.df = self.df.append(df_add, ignore_index=True) 
    13068 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13069 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13070 is deprecated and will be removed from pandas in a future version. Use
    13071 pandas.concat instead. 
    13072 self.df = self.df.append(df_add, ignore_index=True) 
    13073 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13074 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13075 is deprecated and will be removed from pandas in a future version. Use
    13076 pandas.concat instead. 
    13077 self.df = self.df.append(df_add, ignore_index=True) 
    13078 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13079 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13080 is deprecated and will be removed from pandas in a future version. Use
    13081 pandas.concat instead. 
    13082 self.df = self.df.append(df_add, ignore_index=True) 
    13083 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13084 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13085 is deprecated and will be removed from pandas in a future version. Use
    13086 pandas.concat instead. 
    13087 self.df = self.df.append(df_add, ignore_index=True) 
    13088 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13089 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13090 is deprecated and will be removed from pandas in a future version. Use
    13091 pandas.concat instead. 
    13092 self.df = self.df.append(df_add, ignore_index=True) 
    13093 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13094 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13095 is deprecated and will be removed from pandas in a future version. Use
    13096 pandas.concat instead. 
    13097 self.df = self.df.append(df_add, ignore_index=True) 
    13098 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13099 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13100 is deprecated and will be removed from pandas in a future version. Use
    13101 pandas.concat instead. 
    13102 self.df = self.df.append(df_add, ignore_index=True) 
    13103 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13104 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13105 is deprecated and will be removed from pandas in a future version. Use
    13106 pandas.concat instead. 
    13107 self.df = self.df.append(df_add, ignore_index=True) 
    13108 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13109 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13110 is deprecated and will be removed from pandas in a future version. Use
    13111 pandas.concat instead. 
    13112 self.df = self.df.append(df_add, ignore_index=True) 
    13113 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13114 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13115 is deprecated and will be removed from pandas in a future version. Use
    13116 pandas.concat instead. 
    13117 self.df = self.df.append(df_add, ignore_index=True) 
    13118 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13119 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13120 is deprecated and will be removed from pandas in a future version. Use
    13121 pandas.concat instead. 
    13122 self.df = self.df.append(df_add, ignore_index=True) 
    13123 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13124 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13125 is deprecated and will be removed from pandas in a future version. Use
    13126 pandas.concat instead. 
    13127 self.df = self.df.append(df_add, ignore_index=True) 
    13128 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13129 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13130 is deprecated and will be removed from pandas in a future version. Use
    13131 pandas.concat instead. 
    13132 self.df = self.df.append(df_add, ignore_index=True) 
    13133 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13134 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13135 is deprecated and will be removed from pandas in a future version. Use
    13136 pandas.concat instead. 
    13137 self.df = self.df.append(df_add, ignore_index=True) 
    13138 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13139 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13140 is deprecated and will be removed from pandas in a future version. Use
    13141 pandas.concat instead. 
    13142 self.df = self.df.append(df_add, ignore_index=True) 
    13143 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13144 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13145 is deprecated and will be removed from pandas in a future version. Use
    13146 pandas.concat instead. 
    13147 self.df = self.df.append(df_add, ignore_index=True) 
    13148 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13149 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13150 is deprecated and will be removed from pandas in a future version. Use
    13151 pandas.concat instead. 
    13152 self.df = self.df.append(df_add, ignore_index=True) 
    13153 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13154 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13155 is deprecated and will be removed from pandas in a future version. Use
    13156 pandas.concat instead. 
    13157 self.df = self.df.append(df_add, ignore_index=True) 
    13158 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13159 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13160 is deprecated and will be removed from pandas in a future version. Use
    13161 pandas.concat instead. 
    13162 self.df = self.df.append(df_add, ignore_index=True) 
    13163 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13164 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13165 is deprecated and will be removed from pandas in a future version. Use
    13166 pandas.concat instead. 
    13167 self.df = self.df.append(df_add, ignore_index=True) 
    13168 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13169 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13170 is deprecated and will be removed from pandas in a future version. Use
    13171 pandas.concat instead. 
    13172 self.df = self.df.append(df_add, ignore_index=True) 
    13173 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13174 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13175 is deprecated and will be removed from pandas in a future version. Use
    13176 pandas.concat instead. 
    13177 self.df = self.df.append(df_add, ignore_index=True) 
    13178 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13179 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13180 is deprecated and will be removed from pandas in a future version. Use
    13181 pandas.concat instead. 
    13182 self.df = self.df.append(df_add, ignore_index=True) 
    13183 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13184 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13185 is deprecated and will be removed from pandas in a future version. Use
    13186 pandas.concat instead. 
    13187 self.df = self.df.append(df_add, ignore_index=True) 
    13188 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13189 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13190 is deprecated and will be removed from pandas in a future version. Use
    13191 pandas.concat instead. 
    13192 self.df = self.df.append(df_add, ignore_index=True) 
    13193 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13194 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13195 is deprecated and will be removed from pandas in a future version. Use
    13196 pandas.concat instead. 
    13197 self.df = self.df.append(df_add, ignore_index=True) 
    13198 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13199 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13200 is deprecated and will be removed from pandas in a future version. Use
    13201 pandas.concat instead. 
    13202 self.df = self.df.append(df_add, ignore_index=True) 
    13203 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13204 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13205 is deprecated and will be removed from pandas in a future version. Use
    13206 pandas.concat instead. 
    13207 self.df = self.df.append(df_add, ignore_index=True) 
    13208 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13209 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13210 is deprecated and will be removed from pandas in a future version. Use
    13211 pandas.concat instead. 
    13212 self.df = self.df.append(df_add, ignore_index=True) 
    13213 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13214 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13215 is deprecated and will be removed from pandas in a future version. Use
    13216 pandas.concat instead. 
    13217 self.df = self.df.append(df_add, ignore_index=True) 
    13218 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13219 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13220 is deprecated and will be removed from pandas in a future version. Use
    13221 pandas.concat instead. 
    13222 self.df = self.df.append(df_add, ignore_index=True) 
    13223 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13224 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13225 is deprecated and will be removed from pandas in a future version. Use
    13226 pandas.concat instead. 
    13227 self.df = self.df.append(df_add, ignore_index=True) 
    13228 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13229 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13230 is deprecated and will be removed from pandas in a future version. Use
    13231 pandas.concat instead. 
    13232 self.df = self.df.append(df_add, ignore_index=True) 
    13233 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13234 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13235 is deprecated and will be removed from pandas in a future version. Use
    13236 pandas.concat instead. 
    13237 self.df = self.df.append(df_add, ignore_index=True) 
    13238 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13239 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13240 is deprecated and will be removed from pandas in a future version. Use
    13241 pandas.concat instead. 
    13242 self.df = self.df.append(df_add, ignore_index=True) 
    13243 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13244 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13245 is deprecated and will be removed from pandas in a future version. Use
    13246 pandas.concat instead. 
    13247 self.df = self.df.append(df_add, ignore_index=True) 
    13248 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13249 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13250 is deprecated and will be removed from pandas in a future version. Use
    13251 pandas.concat instead. 
    13252 self.df = self.df.append(df_add, ignore_index=True) 
    13253 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13254 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13255 is deprecated and will be removed from pandas in a future version. Use
    13256 pandas.concat instead. 
    13257 self.df = self.df.append(df_add, ignore_index=True) 
    13258 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13259 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13260 is deprecated and will be removed from pandas in a future version. Use
    13261 pandas.concat instead. 
    13262 self.df = self.df.append(df_add, ignore_index=True) 
    13263 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13264 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13265 is deprecated and will be removed from pandas in a future version. Use
    13266 pandas.concat instead. 
    13267 self.df = self.df.append(df_add, ignore_index=True) 
    13268 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13269 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13270 is deprecated and will be removed from pandas in a future version. Use
    13271 pandas.concat instead. 
    13272 self.df = self.df.append(df_add, ignore_index=True) 
    13273 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13274 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13275 is deprecated and will be removed from pandas in a future version. Use
    13276 pandas.concat instead. 
    13277 self.df = self.df.append(df_add, ignore_index=True) 
    13278 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13279 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13280 is deprecated and will be removed from pandas in a future version. Use
    13281 pandas.concat instead. 
    13282 self.df = self.df.append(df_add, ignore_index=True) 
    13283 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13284 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13285 is deprecated and will be removed from pandas in a future version. Use
    13286 pandas.concat instead. 
    13287 self.df = self.df.append(df_add, ignore_index=True) 
    13288 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13289 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13290 is deprecated and will be removed from pandas in a future version. Use
    13291 pandas.concat instead. 
    13292 self.df = self.df.append(df_add, ignore_index=True) 
    13293 C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    13294 packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method
    13295 is deprecated and will be removed from pandas in a future version. Use
    13296 pandas.concat instead. 
    13297 self.df = self.df.append(df_add, ignore_index=True) 
     1176
     1177[log trimmed to fit within ticket limits]
     1178
    132981179C:\Users\Steve021\AppData\Local\UCSF\ChimeraX\1.2\site-
    132991180packages\chimerax\xmas\info_file.py:30: FutureWarning: The frame.append method