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Opened 4 years ago
Last modified 4 years ago
#6221 closed defect
Crash using File→Open on Windows and/or in return statement — at Version 1
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.19043
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\libWindows fatal exception: code 0x8001010e
\sWindows fatal exception: code 0xi8001010et
e-Windows fatal exception: pcode 0xa8001010ec
kaWindows fatal exception: gcode 0xe8001010es
\cWindows fatal exception: code 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010ex
\oWindows fatal exception: code 0xp8001010e
eWindows fatal exception: ncode 0x_8001010ec
omWindows fatal exception: mcode 0xa8001010e
nd\dialog.py", line 107 in
File "CWindows fatal exception: :code 0x\8001010eP
rograWindows fatal exception: mcode 0x 8001010eF
ilWindows fatal exception: escode 0x\8001010eC
himWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
acWindows fatal exception: kcode 0xa8001010eg
es\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e.
3\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
acWindows fatal exception: kcode 0xa8001010eg
eWindows fatal exception: scode 0x\8001010ec
hiWindows fatal exception: mcode 0xe8001010er
axWindows fatal exception: \code 0xo8001010ep
enWindows fatal exception: _code 0xc8001010eo
mmand\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.Windows fatal exception: 3code 0x\b8001010ei
n\liWindows fatal exception: bcode 0x\8001010es
ite-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0xs8001010e\
ChiWindows fatal exception: mcode 0xe8001010er
aX_Windows fatal exception: mcode 0xWindows fatal exception: acode 0x8001010e8001010ei
n.Windows fatal exception: Windows fatal exception: pcode 0xy8001010e"
, line code 0xWindows fatal exception: 8678001010e in code 0x
8001010e
Windows fatal exception: iWindows fatal exception: ncode 0xcode 0x8001010e8001010e
iWindows fatal exception: Windows fatal exception: tcode 0x
8001010ecode 0x File
8001010e"
C:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raX 1.3\bin\lib\site-packages\ChimeraWindows fatal exception: Xcode 0x_8001010em
ainWindows fatal exception: .code 0xp8001010ey
"Windows fatal exception: , line code 0x10188001010e in
code 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py"Windows fatal exception: code 0x8001010e, line
197 in _rWindows fatal exception: ucode 0xn8001010e_
moWindows fatal exception: dcode 0xu8001010el
e_Windows fatal exception: acode 0xs8001010e_
maWindows fatal exception: icode 0xn8001010e
Thread 0x00003dccWindows fatal exception: code 0x8001010e
Windows fatal exception: (most recent call first):
code 0x File "8001010eC
:\ProWindows fatal exception: gcode 0xr8001010ea
m FWindows fatal exception: icode 0xl8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
eraWindows fatal exception: Xcode 0x8001010e
1.3Windows fatal exception: \bcode 0xi8001010en
\lib\site-pacWindows fatal exception: kcode 0xa8001010eg
esWindows fatal exception: \code 0xc8001010eh
imWindows fatal exception: ecode 0xr8001010ea
xWindows fatal exception: \code 0xo8001010ep
enWindows fatal exception: _code 0xc8001010eo
mmWindows fatal exception: acode 0xn8001010ed
\dWindows fatal exception: icode 0xa8001010el
ogWindows fatal exception: .code 0xp8001010ey
"Windows fatal exception: , line code 0x1358001010e in
show_open_file_dialog
File "C:\Program Files\ChimeraXWindows fatal exception: code 0x18001010e.
3\bWindows fatal exception: icode 0xn8001010e\
libWindows fatal exception: \code 0xs8001010ei
te-Windows fatal exception: pcode 0xa8001010ec
kagWindows fatal exception: ecode 0xs8001010e\
chiWindows fatal exception: mcode 0xe8001010er
ax\Windows fatal exception: ocode 0xp8001010ee
n_cWindows fatal exception: ocode 0xm8001010em
andWindows fatal exception: \code 0xd8001010ei
alog.py", line 107Windows fatal exception: in code 0x
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
in\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
[lots of this deleted]
Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_moWindows fatal exception: dcode 0xu8001010el
e_as_Windows fatal exception: mcode 0xa8001010ei
n
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
Thread 0xWindows fatal exception: 00003dcccode 0x8001010e (most recent call first):
File Windows fatal exception: "code 0xC8001010e:
\Windows fatal exception: Pcode 0xr8001010eo
gWindows fatal exception: rcode 0xa8001010em
Windows fatal exception: Fcode 0xi8001010el
es\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_commanWindows fatal exception: dcode 0x\8001010ed
iaWindows fatal exception: lcode 0xo8001010eg
.pWindows fatal exception: ycode 0x"8001010e, line
135Windows fatal exception: in code 0xs8001010eh
oWindows fatal exception: wcode 0x_8001010eo
pWindows fatal exception: ecode 0xn8001010e_
fWindows fatal exception: icode 0xl8001010ee
_Windows fatal exception: dcode 0xi8001010ea
lWindows fatal exception: ocode 0xg8001010e
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimeraxWindows fatal exception: \code 0xo8001010ep
en_Windows fatal exception: ccode 0xo8001010em
maWindows fatal exception: ncode 0xd8001010e\
diWindows fatal exception: acode 0xl8001010eo
g.Windows fatal exception: pcode 0xy8001010e"
, line 107Windows fatal exception: in code 0x
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
gWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
sWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
pWindows fatal exception: acode 0xc8001010ek
ages\chimerax\ui\gui.py", line 301 in event_Windows fatal exception: lcode 0xo8001010eo
p
Windows fatal exception: File code 0x"8001010eC
:Windows fatal exception: \code 0xP8001010er
oWindows fatal exception: gcode 0xr8001010ea
mWindows fatal exception: code 0x 8001010eF
iWindows fatal exception: lcode 0xe8001010es
\Windows fatal exception: Ccode 0xh8001010ei
mWindows fatal exception: ecode 0xr8001010ea
XWindows fatal exception: code 0x18001010e.
3\bin\lib\site-packages\ChimeraX_main.py", line 867 in iWindows fatal exception: ncode 0xi8001010et
File Windows fatal exception: code 0x"8001010eC
:Windows fatal exception: \code 0xP8001010er
ogrWindows fatal exception: acode 0xm8001010e
FilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\site-packages\ChimeraX_main.py", line 1018 in Windows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
oWindows fatal exception: gcode 0xr8001010ea
mWindows fatal exception: code 0xF8001010ei
lWindows fatal exception: ecode 0xs8001010e\
CWindows fatal exception: hcode 0xi8001010em
eWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x38001010e\
bWindows fatal exception: icode 0xn8001010e\
lib\runpy.py", line 87 in _run_cWindows fatal exception: ocode 0xd8001010ee
File Windows fatal exception: "code 0xC8001010e:
\Windows fatal exception: Pcode 0xr8001010eo
gWindows fatal exception: rcode 0xa8001010em
Windows fatal exception: Fcode 0xi8001010el
eWindows fatal exception: scode 0x\8001010eC
hWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: acode 0xX8001010e
1Windows fatal exception: .code 0x38001010e\
bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FWindows fatal exception: icode 0xl8001010e
eWindows fatal exception: code 0xs8001010e\
CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1Windows fatal exception: .code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ib\site-packages\chimeraWindows fatal exception: xcode 0x\8001010eo
peWindows fatal exception: ncode 0x_8001010ec
oWindows fatal exception: mcode 0xm8001010ea
nWindows fatal exception: dcode 0x\8001010ed
iWindows fatal exception: acode 0xl8001010eo
g.Windows fatal exception: pcode 0xy8001010e"
, line 135 in show_open_fileWindows fatal exception: _code 0xd8001010ei
aloWindows fatal exception: gcode 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
rogram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\ProgramWindows fatal exception: code 0x8001010e
FilesWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X 1Windows fatal exception: .code 0x38001010e\
binWindows fatal exception: \code 0xl8001010ei
b\sWindows fatal exception: icode 0xt8001010ee
-paWindows fatal exception: ccode 0xk8001010ea
ges\Windows fatal exception: ccode 0xh8001010ei
merWindows fatal exception: acode 0xx8001010e\
ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3Windows fatal exception: \code 0xb8001010ei
n\liWindows fatal exception: bcode 0x\8001010es
iteWindows fatal exception: -code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
_maWindows fatal exception: icode 0xn8001010e.
pyWindows fatal exception: "code 0x, line 8001010e867
in iWindows fatal exception: nicode 0x8001010et
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _runWindows fatal exception: code 0x8001010e_
codeWindows fatal exception:
code 0x File 8001010e"
C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.3Windows fatal exception: \code 0xb8001010ei
n\liWindows fatal exception: code 0xb8001010e\
runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimerWindows fatal exception: acode 0xX8001010e
1.3Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\Windows fatal exception: scode 0xi8001010et
eWindows fatal exception: -code 0xp8001010ea
ckWindows fatal exception: acode 0xg8001010ee
s\Windows fatal exception: ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010ex
\uWindows fatal exception: icode 0x\8001010eg
ui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_Windows fatal exception: code 0x8001010e
comWindows fatal exception: mcode 0xa8001010en
d\diaWindows fatal exception: lcode 0xo8001010eg
.pyWindows fatal exception: "code 0x, line 8001010e135
in shoWindows fatal exception: wcode 0x_8001010eo
pen_fWindows fatal exception: icode 0xl8001010ee
_dialoWindows fatal exception: gcode 0x
8001010e File
"C:\PrWindows fatal exception: code 0xog8001010e
ram FiWindows fatal exception: lcode 0xe8001010es
\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packWindows fatal exception: acode 0xg8001010ee
s\ChiWindows fatal exception: mcode 0xe8001010er
aX_mWindows fatal exception: acode 0xi8001010en
.pyWindows fatal exception: "code 0x, line 8001010e867
in iniWindows fatal exception: tcode 0x
8001010e File
"C:Windows fatal exception: \code 0xP8001010er
ogrWindows fatal exception: acode 0xm8001010e
FileWindows fatal exception: s\code 0xC8001010eh
imerWindows fatal exception: aXcode 0x 1.8001010e3
\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:Windows fatal exception: \code 0xP8001010er
ogramWindows fatal exception: code 0xF8001010ei
les\Windows fatal exception: Ccode 0xh8001010ei
meraWindows fatal exception: Xcode 0x 8001010e1
.3Windows fatal exception: \code 0xb8001010ein
\libWindows fatal exception: \code 0xs8001010ei
te-pWindows fatal exception: acode 0xc8001010ek
agesWindows fatal exception: \code 0xc8001010eh
imeWindows fatal exception: rcode 0xa8001010ex
\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00003dcc (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\settings.py", line 173 in __getattr__
Windows fatal exception: access violation
===== Log before crash start =====
> open D:\sample.cxs format session
opened ChimeraX session
> show #!1.2 models
> hide #!1.1 models
> show #!1.3 models
> hide #!1.2 models
> show #!1.4 models
> hide #!1.3 models
> show #!1.2 models
> show #!1.3 models
> hide #!1.4 models
> hide #!1.3 models
> show #!1.3 models
> hide #!1.2 models
> hide #!1.3 models
> show #!1.1 models
> show #!1.2 models
> hide #!1.1 models
> hide #!1.2 models
> show #!1.3 models
> show #!1.4 models
> hide #!1.3 models
> show #!1.5 models
> hide #!1.4 models
> hide #!1.5 models
> show #!1.6 models
> hide #!1.6 models
> show #!1.7 models
> show #!1.8 models
> hide #!1.7 models
> show #!1.9 models
> hide #!1.8 models
> hide #!1.9 models
> show #!1.1 models
> show #!1.2 models
> hide #!1.1 models
> hide #!1.2 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.5 models
> hide #!1.5 models
> show #!1.6 models
> hide #!1.6 models
> show #!1.7 models
> hide #!1.7 models
> show #!1.8 models
> show #!1.9 models
> hide #!1.8 models
> save D:/sample.cxs
> close #1.4
> hide target m
> close
> open D:/docking/out/220219/agrC_agr2vsAIP2.pdbqt
Summary of feedback from opening D:/docking/out/220219/agrC_agr2vsAIP2.pdbqt
---
warnings | Ignored bad PDB record found on line 2
REMARK VINA RESULT: -7.4 0.000 0.000
Ignored bad PDB record found on line 4
REMARK status: ('A' for Active; 'I' for Inactive)
Ignored bad PDB record found on line 5
REMARK 1 A between atoms: N_1 and CA_2
Ignored bad PDB record found on line 6
REMARK 2 A between atoms: CA_2 and C_3
Ignored bad PDB record found on line 7
REMARK 3 A between atoms: C_3 and N_4
2335 messages similar to the above omitted
Chain information for agrC_agr2vsAIP2.pdb
---
Chain | Description
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A | No description
available
Associated agrC_agr2vsAIP2.pdb (1.1) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.2) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.3) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.4) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.5) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.6) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.7) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.8) chain A to agrII with 0 mismatches
Associated agrC_agr2vsAIP2.pdb (1.9) chain A to agrII with 0 mismatches
Opened agrC_agr2vsAIP2.pdbqt containing 9 structures (1494 atoms, 1404 bonds)
> open D:/docking/protein/agrC_agr2/agrC_agr2_rigid.pdbqt
Chain information for agrC_agr2_rigid.pdb #2
---
Chain | Description
A | No description available
Associated agrC_agr2_rigid.pdb chain A to agrII with 0 mismatches
Opened agrC_agr2_rigid.pdbqt containing 1 structures (4091 atoms, 4139 bonds)
> hide surfaces
> hide cartoons
> hide atoms
> show surfaces
> hide #!2 models
> hide #!1.1-9 surfaces
> show #!1.1-9 atoms
> show #!2 models
> show surfaces
> color byattribute seq_conservation palette bluered noValueColor silver key
> true
> key blue-white-red :-2.40 :-0.82 :0.76 showTool true
> ui mousemode right "color key"
5585 atoms, 562 residues, 10 surfaces, atom seq_conservation range -2.4 to
0.757
> ui mousemode right translate
> hide #3 models
> hide #!2 models
> transparency 50
> ui tool show "Show Sequence Viewer"
> sequence chain #1.1/A #1.2/A #1.3/A #1.4/A #1.5/A #1.6/A #1.7/A #1.8/A
> #1.9/A
Alignment identifier is 1
> select #1.1/A:3 #1.2/A:3 #1.3/A:3 #1.4/A:3 #1.5/A:3 #1.6/A:3 #1.7/A:3
> #1.8/A:3 #1.9/A:3
45 atoms, 36 bonds, 9 residues, 9 models selected
> select #1.1/A:3-110,169,170,171,176 #1.2/A:3-110,169,170,171,176
> #1.3/A:3-110,169,170,171,176 #1.4/A:3-110,169,170,171,176
> #1.5/A:3-110,169,170,171,176 #1.6/A:3-110,169,170,171,176
> #1.7/A:3-110,169,170,171,176 #1.8/A:3-110,169,170,171,176
> #1.9/A:3-110,169,170,171,176
765 atoms, 675 bonds, 108 pseudobonds, 117 residues, 18 models selected
> ui mousemode right select
Drag select of agrC_agr2vsAIP2.pdb_A SES surface, agrC_agr2vsAIP2.pdb_A SES
surface, agrC_agr2vsAIP2.pdb_A SES surface, agrC_agr2vsAIP2.pdb_A SES surface,
agrC_agr2vsAIP2.pdb_A SES surface, agrC_agr2vsAIP2.pdb_A SES surface,
agrC_agr2vsAIP2.pdb_A SES surface, agrC_agr2vsAIP2.pdb_A SES surface,
agrC_agr2vsAIP2.pdb_A SES surface, 1494 atoms, 126 pseudobonds, 1404 bonds
> select clear
> select #1.1/A:3 #1.2/A:3 #1.3/A:3 #1.4/A:3 #1.5/A:3 #1.6/A:3 #1.7/A:3
> #1.8/A:3 #1.9/A:3
45 atoms, 36 bonds, 9 residues, 9 models selected
> select #1.1/A:3-110,169,170,171,176 #1.2/A:3-110,169,170,171,176
> #1.3/A:3-110,169,170,171,176 #1.4/A:3-110,169,170,171,176
> #1.5/A:3-110,169,170,171,176 #1.6/A:3-110,169,170,171,176
> #1.7/A:3-110,169,170,171,176 #1.8/A:3-110,169,170,171,176
> #1.9/A:3-110,169,170,171,176
765 atoms, 675 bonds, 108 pseudobonds, 117 residues, 18 models selected
> hide sel surfaces
> hide sel atoms
Drag select of agrC_agr2vsAIP2.pdb_A SES surface, 13218 of 34854 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 12095 of 33494 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 14685 of 37322 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 14612 of 36116 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 13929 of 36346 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 12950 of 34738 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 14036 of 36482 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 11704 of 33846 triangles,
agrC_agr2vsAIP2.pdb_A SES surface, 13298 of 34212 triangles, 729 atoms, 9
pseudobonds, 729 bonds
> hide sel surfaces
Drag select of 54 atoms, 45 bonds
> hide sel surfaces
> hide sel atoms
Drag select of 675 atoms, 684 bonds
> color sel green
> select clear
> select #1
1494 atoms, 1404 bonds, 126 pseudobonds, 135 residues, 19 models selected
> show sel atoms
> select clear
Drag select of 9 pseudobonds
> hide sel
> select clear
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
> select clear
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
> select clear
Drag select of 1 pseudobonds
> hide sel
Drag select of 1 pseudobonds, 1 bonds
> select #1.9/A:1@CG1
1 atom, 1 residue, 1 model selected
Drag select of 1 pseudobonds
> hide sel
> select clear
> hide sel
> select clear
> hide sel
> select clear
Drag select of 9 pseudobonds
> hide sel
> select clear
> hide sel
> hide sel pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
> select #1.1/A:3 #1.2/A:3 #1.3/A:3 #1.4/A:3 #1.5/A:3 #1.6/A:3 #1.7/A:3
> #1.8/A:3 #1.9/A:3
45 atoms, 36 bonds, 9 residues, 9 models selected
> select #1.1/A:3-110,169,170,171,176 #1.2/A:3-110,169,170,171,176
> #1.3/A:3-110,169,170,171,176 #1.4/A:3-110,169,170,171,176
> #1.5/A:3-110,169,170,171,176 #1.6/A:3-110,169,170,171,176
> #1.7/A:3-110,169,170,171,176 #1.8/A:3-110,169,170,171,176
> #1.9/A:3-110,169,170,171,176
765 atoms, 675 bonds, 108 pseudobonds, 117 residues, 18 models selected
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-110,169,170,171,176 #1.2/A:2-110,169,170,171,176
> #1.3/A:2-110,169,170,171,176 #1.4/A:2-110,169,170,171,176
> #1.5/A:2-110,169,170,171,176 #1.6/A:2-110,169,170,171,176
> #1.7/A:2-110,169,170,171,176 #1.8/A:2-110,169,170,171,176
> #1.9/A:2-110,169,170,171,176
819 atoms, 720 bonds, 117 pseudobonds, 126 residues, 18 models selected
Drag select of 1494 atoms, 1404 bonds
> show sel surfaces
> select clear
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
675 atoms, 684 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
675 atoms, 684 bonds, 9 residues, 9 models selected
Seqview [ID: 1] region 9 chains [1] RMSD: 10.479
> hide sel surfaces
> select clear
> show #!2 models
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-110,169,170,171,176 #1.2/A:2-110,169,170,171,176
> #1.3/A:2-110,169,170,171,176 #1.4/A:2-110,169,170,171,176
> #1.5/A:2-110,169,170,171,176 #1.6/A:2-110,169,170,171,176
> #1.7/A:2-110,169,170,171,176 #1.8/A:2-110,169,170,171,176
> #1.9/A:2-110,169,170,171,176
819 atoms, 720 bonds, 117 pseudobonds, 126 residues, 18 models selected
> hide sel atoms
> select clear
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
675 atoms, 684 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
675 atoms, 684 bonds, 9 residues, 9 models selected
Seqview [ID: 1] region 9 chains [1] RMSD: 10.479
> hbonds sel reveal true log true
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: agrC_agr2_rigid.pdb #2/A GLU 2 N; agrC_agr2_rigid.pdb #2/A TYR
49 N; agrC_agr2_rigid.pdb #2/A TYR 48 N; agrC_agr2_rigid.pdb #2/A THR 3 N;
agrC_agr2_rigid.pdb #2/A ASN 6 N; agrC_agr2_rigid.pdb #2/A VAL 94 N;
agrC_agr2_rigid.pdb #2/A PHE 97 N; agrC_agr2_rigid.pdb #2/A LEU 98 N;
agrC_agr2_rigid.pdb #2/A ARG 101 N; agrC_agr2_rigid.pdb #2/A LEU 110 N;
agrC_agr2_rigid.pdb #2/A SER 170 N; agrC_agr2_rigid.pdb #2/A THR 169 N;
agrC_agr2_rigid.pdb #2/A SER 171 N; agrC_agr2_rigid.pdb #2/A LEU 176 N
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1.1 agrC_agr2vsAIP2.pdb
1.2 agrC_agr2vsAIP2.pdb
1.3 agrC_agr2vsAIP2.pdb
1.4 agrC_agr2vsAIP2.pdb
1.5 agrC_agr2vsAIP2.pdb
1.6 agrC_agr2vsAIP2.pdb
1.7 agrC_agr2vsAIP2.pdb
1.8 agrC_agr2vsAIP2.pdb
1.9 agrC_agr2vsAIP2.pdb
2 agrC_agr2_rigid.pdb
43 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
agrC_agr2vsAIP2.pdb #1.1/A UNK 1 N agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2vsAIP2.pdb #1.1/A UNK 1 H 3.207 2.268
agrC_agr2vsAIP2.pdb #1.1/A UNK 1 N agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2vsAIP2.pdb #1.1/A UNK 1 H 3.175 2.454
agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2vsAIP2.pdb #1.1/A UNK 1 H 2.832 1.892
agrC_agr2vsAIP2.pdb #1.1/A ARG 101 NH1 agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2vsAIP2.pdb #1.1/A ARG 101 HH 3.168 2.430
agrC_agr2vsAIP2.pdb #1.1/A ARG 101 NH2 agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2vsAIP2.pdb #1.1/A ARG 101 HH 3.050 2.265
agrC_agr2vsAIP2.pdb #1.2/A UNK 1 N agrC_agr2_rigid.pdb #2/A SER 166 OG agrC_agr2vsAIP2.pdb #1.2/A UNK 1 H1 3.118 2.120
agrC_agr2vsAIP2.pdb #1.2/A UNK 1 ND2 agrC_agr2_rigid.pdb #2/A GLN 13 OE1 agrC_agr2vsAIP2.pdb #1.2/A UNK 1 2HD2 3.145 2.501
agrC_agr2vsAIP2.pdb #1.2/A ASN 6 ND2 agrC_agr2vsAIP2.pdb #1.2/A UNK 1 OD1 agrC_agr2vsAIP2.pdb #1.2/A ASN 6 1HD2 2.805 1.977
agrC_agr2vsAIP2.pdb #1.2/A THR 169 OG1 agrC_agr2vsAIP2.pdb #1.2/A UNK 1 O agrC_agr2vsAIP2.pdb #1.2/A THR 169 HG1 3.226 2.375
agrC_agr2vsAIP2.pdb #1.3/A UNK 1 N agrC_agr2vsAIP2.pdb #1.3/A UNK 1 O agrC_agr2vsAIP2.pdb #1.3/A UNK 1 H 3.122 2.157
agrC_agr2vsAIP2.pdb #1.3/A UNK 1 ND2 agrC_agr2vsAIP2.pdb #1.3/A TYR 48 OH agrC_agr2vsAIP2.pdb #1.3/A UNK 1 1HD2 3.091 2.101
agrC_agr2vsAIP2.pdb #1.3/A UNK 1 ND2 agrC_agr2_rigid.pdb #2/A GLN 13 OE1 agrC_agr2vsAIP2.pdb #1.3/A UNK 1 2HD2 3.120 2.244
agrC_agr2vsAIP2.pdb #1.3/A SER 171 OG agrC_agr2vsAIP2.pdb #1.3/A UNK 1 OG agrC_agr2vsAIP2.pdb #1.3/A SER 171 HG 2.918 2.207
agrC_agr2vsAIP2.pdb #1.4/A UNK 1 ND2 agrC_agr2vsAIP2.pdb #1.4/A UNK 1 O agrC_agr2vsAIP2.pdb #1.4/A UNK 1 1HD2 3.193 2.559
agrC_agr2vsAIP2.pdb #1.4/A UNK 1 OG agrC_agr2vsAIP2.pdb #1.4/A UNK 1 O agrC_agr2vsAIP2.pdb #1.4/A UNK 1 H 3.033 2.234
agrC_agr2vsAIP2.pdb #1.5/A UNK 1 N agrC_agr2_rigid.pdb #2/A SER 166 O agrC_agr2vsAIP2.pdb #1.5/A UNK 1 H2 3.090 2.072
agrC_agr2vsAIP2.pdb #1.5/A UNK 1 N agrC_agr2vsAIP2.pdb #1.5/A UNK 1 O agrC_agr2vsAIP2.pdb #1.5/A UNK 1 H 2.804 1.913
agrC_agr2vsAIP2.pdb #1.5/A UNK 1 N agrC_agr2_rigid.pdb #2/A ASN 90 OD1 agrC_agr2vsAIP2.pdb #1.5/A UNK 1 H 2.968 1.952
agrC_agr2vsAIP2.pdb #1.5/A UNK 1 ND2 agrC_agr2_rigid.pdb #2/A TYR 87 OH agrC_agr2vsAIP2.pdb #1.5/A UNK 1 2HD2 3.146 2.339
agrC_agr2vsAIP2.pdb #1.5/A UNK 1 ND2 agrC_agr2_rigid.pdb #2/A SER 166 OG agrC_agr2vsAIP2.pdb #1.5/A UNK 1 1HD2 3.111 2.286
agrC_agr2vsAIP2.pdb #1.6/A UNK 1 N agrC_agr2vsAIP2.pdb #1.6/A ASN 6 OD1 agrC_agr2vsAIP2.pdb #1.6/A UNK 1 H 3.247 2.532
agrC_agr2vsAIP2.pdb #1.6/A UNK 1 ND2 agrC_agr2_rigid.pdb #2/A SER 166 O agrC_agr2vsAIP2.pdb #1.6/A UNK 1 2HD2 3.055 2.047
agrC_agr2vsAIP2.pdb #1.6/A ASN 6 ND2 agrC_agr2vsAIP2.pdb #1.6/A UNK 1 O agrC_agr2vsAIP2.pdb #1.6/A ASN 6 2HD2 2.975 2.035
agrC_agr2vsAIP2.pdb #1.6/A THR 169 OG1 agrC_agr2vsAIP2.pdb #1.6/A UNK 1 O agrC_agr2vsAIP2.pdb #1.6/A THR 169 HG1 2.925 2.382
agrC_agr2vsAIP2.pdb #1.7/A UNK 1 N agrC_agr2_rigid.pdb #2/A SER 166 O agrC_agr2vsAIP2.pdb #1.7/A UNK 1 H 3.193 2.473
agrC_agr2vsAIP2.pdb #1.7/A ASN 6 ND2 agrC_agr2vsAIP2.pdb #1.7/A UNK 1 O agrC_agr2vsAIP2.pdb #1.7/A ASN 6 2HD2 3.163 2.449
agrC_agr2vsAIP2.pdb #1.8/A UNK 1 N agrC_agr2_rigid.pdb #2/A GLN 13 OE1 agrC_agr2vsAIP2.pdb #1.8/A UNK 1 H 3.281 2.393
agrC_agr2vsAIP2.pdb #1.8/A UNK 1 N agrC_agr2vsAIP2.pdb #1.8/A UNK 1 O agrC_agr2vsAIP2.pdb #1.8/A UNK 1 H 2.962 1.964
agrC_agr2vsAIP2.pdb #1.9/A UNK 1 N agrC_agr2vsAIP2.pdb #1.9/A UNK 1 OD1 agrC_agr2vsAIP2.pdb #1.9/A UNK 1 H 3.193 2.448
agrC_agr2vsAIP2.pdb #1.9/A ARG 101 NE agrC_agr2vsAIP2.pdb #1.9/A UNK 1 O agrC_agr2vsAIP2.pdb #1.9/A ARG 101 HE 2.982 2.021
agrC_agr2vsAIP2.pdb #1.9/A ARG 101 NH2 agrC_agr2vsAIP2.pdb #1.9/A UNK 1 O agrC_agr2vsAIP2.pdb #1.9/A ARG 101 HH 3.188 2.332
agrC_agr2vsAIP2.pdb #1.9/A THR 169 OG1 agrC_agr2vsAIP2.pdb #1.9/A UNK 1 O agrC_agr2vsAIP2.pdb #1.9/A THR 169 HG1 2.820 2.241
agrC_agr2_rigid.pdb #2/A ASN 5 ND2 agrC_agr2vsAIP2.pdb #1.9/A UNK 1 O agrC_agr2_rigid.pdb #2/A ASN 5 1HD2 3.066 2.460
agrC_agr2_rigid.pdb #2/A GLN 13 NE2 agrC_agr2vsAIP2.pdb #1.3/A UNK 1 O agrC_agr2_rigid.pdb #2/A GLN 13 1HE2 2.834 1.825
agrC_agr2_rigid.pdb #2/A GLN 13 NE2 agrC_agr2vsAIP2.pdb #1.4/A UNK 1 O agrC_agr2_rigid.pdb #2/A GLN 13 1HE2 3.225 2.402
agrC_agr2_rigid.pdb #2/A GLN 13 NE2 agrC_agr2vsAIP2.pdb #1.5/A UNK 1 O agrC_agr2_rigid.pdb #2/A GLN 13 1HE2 3.309 2.736
agrC_agr2_rigid.pdb #2/A GLN 13 NE2 agrC_agr2vsAIP2.pdb #1.8/A UNK 1 O agrC_agr2_rigid.pdb #2/A GLN 13 1HE2 2.788 2.036
agrC_agr2_rigid.pdb #2/A SER 53 OG agrC_agr2vsAIP2.pdb #1.3/A UNK 1 O agrC_agr2_rigid.pdb #2/A SER 53 HG 3.031 2.304
agrC_agr2_rigid.pdb #2/A SER 53 OG agrC_agr2vsAIP2.pdb #1.5/A UNK 1 O agrC_agr2_rigid.pdb #2/A SER 53 HG 3.120 2.342
agrC_agr2_rigid.pdb #2/A ASN 90 ND2 agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2_rigid.pdb #2/A ASN 90 2HD2 3.100 2.503
agrC_agr2_rigid.pdb #2/A ASN 90 ND2 agrC_agr2vsAIP2.pdb #1.1/A UNK 1 O agrC_agr2_rigid.pdb #2/A ASN 90 2HD2 2.807 1.907
agrC_agr2_rigid.pdb #2/A ASN 90 ND2 agrC_agr2vsAIP2.pdb #1.5/A UNK 1 O agrC_agr2_rigid.pdb #2/A ASN 90 2HD2 3.178 2.213
agrC_agr2_rigid.pdb #2/A ASN 90 ND2 agrC_agr2vsAIP2.pdb #1.6/A UNK 1 O agrC_agr2_rigid.pdb #2/A ASN 90 2HD2 3.029 2.110
43 hydrogen bonds found
> select clear
> color #4 yellow models transparency 0
> select clear
> label @@display
> select clear
> hide #!2 models
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:1-2 #1.2/A:1-2 #1.3/A:1-2 #1.4/A:1-2 #1.5/A:1-2 #1.6/A:1-2
> #1.7/A:1-2 #1.8/A:1-2 #1.9/A:1-2
729 atoms, 729 bonds, 18 pseudobonds, 18 residues, 19 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
675 atoms, 684 bonds, 9 pseudobonds, 9 residues, 10 models selected
Seqview [ID: 1] region 9 chains [1] RMSD: 10.479
> label delete sel
> select clear
> show #!2 models
> hide #!1.1 models
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> hide #!1.6 models
> hide #!1.7 models
> hide #!1.8 models
> hide #!1.9 models
> show #!1.1 models
> show #!1.2 models
> hide #!1.1 models
> show #!1.1 models
> hide #!1.2 models
> show #!1.2 models
> hide #!1.1 models
> show #!1.3 models
> hide #!1.2 models
> show #!1.4 models
> hide #!1.3 models
> show #!1.5 models
> hide #!1.4 models
> hide #!1.5 models
> show #!1.6 models
> show #!1.7 models
> hide #!1.6 models
> show #!1.8 models
> hide #!1.7 models
> show #!1.9 models
> hide #!1.8 models
> save D:/docking/result/agrC_agr2_AIP2_2_all.cxs
> close #1.2
> close
> open D:/docking/result/agrC_agr2_AIP2_2_all.cxs
opened ChimeraX session
> close
> open D:/docking/out/220219/agrC_agr3vsAIP3.pdbqt
Summary of feedback from opening D:/docking/out/220219/agrC_agr3vsAIP3.pdbqt
---
warnings | Ignored bad PDB record found on line 2
REMARK VINA RESULT: -9.2 0.000 0.000
Ignored bad PDB record found on line 4
REMARK status: ('A' for Active; 'I' for Inactive)
Ignored bad PDB record found on line 5
REMARK 1 A between atoms: N_1 and C_2
Ignored bad PDB record found on line 6
REMARK 2 A between atoms: C_2 and C_3
Ignored bad PDB record found on line 7
REMARK 3 A between atoms: C_2 and C_17
2173 messages similar to the above omitted
Chain information for agrC_agr3vsAIP3.pdb
---
Chain | Description
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A | No description
available
Associated agrC_agr3vsAIP3.pdb (1.1) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.2) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.3) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.4) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.5) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.6) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.7) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.8) chain A to agrI with 0 mismatches
Associated agrC_agr3vsAIP3.pdb (1.9) chain A to agrI with 0 mismatches
Opened agrC_agr3vsAIP3.pdbqt containing 9 structures (1413 atoms, 1323 bonds)
> open D:/docking/protein/agrC_agr3/agrC_agr3_rigid.pdbqt
Chain information for agrC_agr3_rigid.pdb #2
---
Chain | Description
A | No description available
Associated agrC_agr3_rigid.pdb chain A to agrIII with 0 mismatches
Opened agrC_agr3_rigid.pdbqt containing 1 structures (4158 atoms, 4202 bonds)
> hide cartoons
> hide atoms
> hide surfaces
> show surfaces
> hide #!2 models
> show #!1.1-9 atoms
> show #!2 models
> color byattribute seq_conservation palette bluered noValueColor silver key
> true
> key blue-white-red :-2.40 :-0.82 :0.76 showTool true
> ui mousemode right "color key"
5571 atoms, 565 residues, 10 surfaces, atom seq_conservation range -2.4 to
0.757
> ui mousemode right select
> transparency 50
> hide #!2 models
> ui tool show "Show Sequence Viewer"
> sequence chain #1.1/A #1.2/A #1.3/A #1.4/A #1.5/A #1.6/A #1.7/A #1.8/A
> #1.9/A
Alignment identifier is 1
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-55,97,100-179 #1.2/A:2-55,97,100-179 #1.3/A:2-55,97,100-179
> #1.4/A:2-55,97,100-179 #1.5/A:2-55,97,100-179 #1.6/A:2-55,97,100-179
> #1.7/A:2-55,97,100-179 #1.8/A:2-55,97,100-179 #1.9/A:2-55,97,100-179
765 atoms, 675 bonds, 108 pseudobonds, 117 residues, 18 models selected
> hide sel surfaces
> hide sel atoms
Drag select of agrC_agr3vsAIP3.pdb_A SES surface, 1528 of 26122 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1549 of 25992 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1509 of 25528 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1505 of 25626 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1469 of 25138 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1521 of 26408 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1505 of 26218 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1518 of 25984 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 1547 of 26126 triangles, 36 atoms, 27 bonds
> hide sel cartoons
> hide sel atoms
> hide sel surfaces
Drag select of 612 atoms, 621 bonds
> color sel green
> hide #3 models
> select clear
> select #1
1413 atoms, 1323 bonds, 117 pseudobonds, 135 residues, 19 models selected
> show sel atoms
> select clear
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 18 pseudobonds
> hide sel
> select clear
Drag select of 25 atoms, 17 bonds
> select clear
Drag select of 9 pseudobonds
> hide sel
> select clear
Drag select of 1 atoms
> select clear
Drag select of 9 pseudobonds, 1 atoms
> select subtract #1.2/A:9@CE2
9 pseudobonds, 10 models selected
> hide sel
> select clear
> hide sel
> hide sel pseudobonds
> hide sel
> hide sel pseudobonds
> hide sel
> hide sel pseudobonds
> select clear
> hide sel
> hide sel pseudobonds
> hide sel
> hide sel pseudobonds
> hide sel
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-55,97,100-179 #1.2/A:2-55,97,100-179 #1.3/A:2-55,97,100-179
> #1.4/A:2-55,97,100-179 #1.5/A:2-55,97,100-179 #1.6/A:2-55,97,100-179
> #1.7/A:2-55,97,100-179 #1.8/A:2-55,97,100-179 #1.9/A:2-55,97,100-179
765 atoms, 675 bonds, 108 pseudobonds, 117 residues, 18 models selected
> hide sel atoms
Drag select of 36 atoms, 27 bonds
> hide sel atoms
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-55,97,100-179 #1.2/A:2-55,97,100-179 #1.3/A:2-55,97,100-179
> #1.4/A:2-55,97,100-179 #1.5/A:2-55,97,100-179 #1.6/A:2-55,97,100-179
> #1.7/A:2-55,97,100-179 #1.8/A:2-55,97,100-179 #1.9/A:2-55,97,100-179
765 atoms, 675 bonds, 108 pseudobonds, 117 residues, 18 models selected
> show sel surfaces
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> show sel atoms
Drag select of agrC_agr3vsAIP3.pdb_A SES surface, 3 of 25138 triangles, 27
atoms, 27 bonds
Drag select of agrC_agr3vsAIP3.pdb_A SES surface, 113 of 26122 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 113 of 25992 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 114 of 25528 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 113 of 25626 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 113 of 25138 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 113 of 26408 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 113 of 26218 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 113 of 25984 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 113 of 26126 triangles, 36 atoms, 27 bonds
> hide sel atoms
> show sel surfaces
> select clear
Drag select of agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES
surface, agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES surface,
agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES surface,
agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES surface,
agrC_agr3vsAIP3.pdb_A SES surface, 612 atoms, 621 bonds
> hide sel atoms
> hide sel cartoons
> hide sel surfaces
Drag select of agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES
surface, agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES surface,
agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES surface,
agrC_agr3vsAIP3.pdb_A SES surface, agrC_agr3vsAIP3.pdb_A SES surface,
agrC_agr3vsAIP3.pdb_A SES surface
> select #1
1413 atoms, 1323 bonds, 117 pseudobonds, 135 residues, 19 models selected
> hide sel surfaces
> show sel atoms
Drag select of 1413 atoms, 1323 bonds
> hide sel atoms
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> show sel atoms
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1-55,97,100-179 #1.2/A:1-55,97,100-179 #1.3/A:1-55,97,100-179
> #1.4/A:1-55,97,100-179 #1.5/A:1-55,97,100-179 #1.6/A:1-55,97,100-179
> #1.7/A:1-55,97,100-179 #1.8/A:1-55,97,100-179 #1.9/A:1-55,97,100-179
801 atoms, 702 bonds, 117 pseudobonds, 126 residues, 18 models selected
> select #1
1413 atoms, 1323 bonds, 117 pseudobonds, 135 residues, 19 models selected
> ~select #1
9 models selected
> select #1
1413 atoms, 1323 bonds, 117 pseudobonds, 135 residues, 19 models selected
> show sel atoms
> select clear
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1-55,97,100-179 #1.2/A:1-55,97,100-179 #1.3/A:1-55,97,100-179
> #1.4/A:1-55,97,100-179 #1.5/A:1-55,97,100-179 #1.6/A:1-55,97,100-179
> #1.7/A:1-55,97,100-179 #1.8/A:1-55,97,100-179 #1.9/A:1-55,97,100-179
801 atoms, 702 bonds, 117 pseudobonds, 126 residues, 18 models selected
> hide sel atoms
Drag select of 612 atoms, 621 bonds
> hbonds sel reveal true log true
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: agrC_agr3_rigid.pdb #2/A GLU 2 N; agrC_agr3_rigid.pdb #2/A PHE
51 N; agrC_agr3_rigid.pdb #2/A ASN 5 N; agrC_agr3_rigid.pdb #2/A LEU 4 N;
agrC_agr3_rigid.pdb #2/A TYR 9 N; agrC_agr3_rigid.pdb #2/A ARG 55 N;
agrC_agr3_rigid.pdb #2/A ILE 97 N; agrC_agr3_rigid.pdb #2/A PHE 100 N;
agrC_agr3_rigid.pdb #2/A ILE 104 N; agrC_agr3_rigid.pdb #2/A VAL 110 N;
agrC_agr3_rigid.pdb #2/A ASP 172 N; agrC_agr3_rigid.pdb #2/A ILE 179 N;
agrC_agr3_rigid.pdb #2/A VAL 1 N; agrC_agr3_rigid.pdb #2/A SER 174 N
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1.1 agrC_agr3vsAIP3.pdb
1.2 agrC_agr3vsAIP3.pdb
1.3 agrC_agr3vsAIP3.pdb
1.4 agrC_agr3vsAIP3.pdb
1.5 agrC_agr3vsAIP3.pdb
1.6 agrC_agr3vsAIP3.pdb
1.7 agrC_agr3vsAIP3.pdb
1.8 agrC_agr3vsAIP3.pdb
1.9 agrC_agr3vsAIP3.pdb
2 agrC_agr3_rigid.pdb
24 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
agrC_agr3vsAIP3.pdb #1.2/? UNL 1 O agrC_agr3vsAIP3.pdb #1.2/? UNL 1 O agrC_agr3vsAIP3.pdb #1.2/? UNL 1 H 3.092 2.543
agrC_agr3vsAIP3.pdb #1.3/? UNL 1 N agrC_agr3vsAIP3.pdb #1.3/? UNL 1 O agrC_agr3vsAIP3.pdb #1.3/? UNL 1 H 3.043 2.361
agrC_agr3vsAIP3.pdb #1.3/A ASN 5 ND2 agrC_agr3vsAIP3.pdb #1.3/? UNL 1 O agrC_agr3vsAIP3.pdb #1.3/A ASN 5 2HD2 2.941 2.021
agrC_agr3vsAIP3.pdb #1.4/? UNL 1 N agrC_agr3_rigid.pdb #2/A SER 169 O agrC_agr3vsAIP3.pdb #1.4/? UNL 1 H 3.083 2.196
agrC_agr3vsAIP3.pdb #1.4/? UNL 1 N agrC_agr3vsAIP3.pdb #1.4/? UNL 1 O agrC_agr3vsAIP3.pdb #1.4/? UNL 1 H 3.128 2.324
agrC_agr3vsAIP3.pdb #1.4/? UNL 1 N agrC_agr3_rigid.pdb #2/A SER 169 O agrC_agr3vsAIP3.pdb #1.4/? UNL 1 H 2.890 2.001
agrC_agr3vsAIP3.pdb #1.4/A ARG 55 NH2 agrC_agr3vsAIP3.pdb #1.4/? UNL 1 O agrC_agr3vsAIP3.pdb #1.4/A ARG 55 HH 2.958 2.226
agrC_agr3vsAIP3.pdb #1.5/? UNL 1 N agrC_agr3vsAIP3.pdb #1.5/? UNL 1 O agrC_agr3vsAIP3.pdb #1.5/? UNL 1 H 3.216 2.328
agrC_agr3vsAIP3.pdb #1.6/? UNL 1 N agrC_agr3_rigid.pdb #2/A TYR 168 O agrC_agr3vsAIP3.pdb #1.6/? UNL 1 H 2.974 1.987
agrC_agr3vsAIP3.pdb #1.6/? UNL 1 N agrC_agr3_rigid.pdb #2/A ILE 171 O agrC_agr3vsAIP3.pdb #1.6/? UNL 1 H 3.008 2.195
agrC_agr3vsAIP3.pdb #1.7/? UNL 1 N agrC_agr3_rigid.pdb #2/A SER 169 O agrC_agr3vsAIP3.pdb #1.7/? UNL 1 H 3.040 2.351
agrC_agr3vsAIP3.pdb #1.7/? UNL 1 N agrC_agr3_rigid.pdb #2/A SER 169 O agrC_agr3vsAIP3.pdb #1.7/? UNL 1 H 3.290 2.320
agrC_agr3vsAIP3.pdb #1.7/? UNL 1 N agrC_agr3_rigid.pdb #2/A TYR 168 O agrC_agr3vsAIP3.pdb #1.7/? UNL 1 H 2.937 2.067
agrC_agr3vsAIP3.pdb #1.7/? UNL 1 O agrC_agr3vsAIP3.pdb #1.7/? UNL 1 O agrC_agr3vsAIP3.pdb #1.7/? UNL 1 H 3.070 2.274
agrC_agr3vsAIP3.pdb #1.8/? UNL 1 N agrC_agr3vsAIP3.pdb #1.8/? UNL 1 O agrC_agr3vsAIP3.pdb #1.8/? UNL 1 H 3.264 2.531
agrC_agr3vsAIP3.pdb #1.8/? UNL 1 N agrC_agr3vsAIP3.pdb #1.8/? UNL 1 O agrC_agr3vsAIP3.pdb #1.8/? UNL 1 H 3.078 2.266
agrC_agr3vsAIP3.pdb #1.8/A ASN 5 ND2 agrC_agr3vsAIP3.pdb #1.8/? UNL 1 O agrC_agr3vsAIP3.pdb #1.8/A ASN 5 2HD2 3.066 2.468
agrC_agr3vsAIP3.pdb #1.9/? UNL 1 N agrC_agr3vsAIP3.pdb #1.9/? UNL 1 O agrC_agr3vsAIP3.pdb #1.9/? UNL 1 H 3.364 2.352
agrC_agr3_rigid.pdb #2/A ASN 8 ND2 agrC_agr3vsAIP3.pdb #1.3/? UNL 1 O agrC_agr3_rigid.pdb #2/A ASN 8 2HD2 3.046 2.386
agrC_agr3_rigid.pdb #2/A ASN 8 ND2 agrC_agr3vsAIP3.pdb #1.5/? UNL 1 O agrC_agr3_rigid.pdb #2/A ASN 8 2HD2 3.126 2.191
agrC_agr3_rigid.pdb #2/A SER 56 OG agrC_agr3vsAIP3.pdb #1.4/? UNL 1 O agrC_agr3_rigid.pdb #2/A SER 56 HG 3.555 3.000
agrC_agr3_rigid.pdb #2/A SER 56 OG agrC_agr3vsAIP3.pdb #1.9/? UNL 1 O agrC_agr3_rigid.pdb #2/A SER 56 HG 3.222 2.544
agrC_agr3_rigid.pdb #2/A ASN 93 ND2 agrC_agr3vsAIP3.pdb #1.1/? UNL 1 O agrC_agr3_rigid.pdb #2/A ASN 93 2HD2 2.974 2.265
agrC_agr3_rigid.pdb #2/A ASN 93 ND2 agrC_agr3vsAIP3.pdb #1.4/? UNL 1 O agrC_agr3_rigid.pdb #2/A ASN 93 2HD2 3.009 2.139
24 hydrogen bonds found
> color #4 yellow models transparency 0
> select clear
> hide #!1.9 models
> show #!2 models
> hide #!1.8 models
> hide #!1.7 models
> hide #!1.6 models
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> show #!1.2 models
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> select clear
> hide sel
> show #!1.3 models
> select clear
> hide sel
> show #!1.4 models
> hide sel
> show #!1.5 models
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> show #!1.6 models
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> show #!1.8 models
> hide sel
> show #!1.9 models
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> hide sel
> hide #!1.9 models
> show #!1.8 models
> hide sel
> hide #!1.8 models
> show #!1.7 models
> hide #!1.7 models
> show #!1.6 models
> hide #!1.6 models
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> hide #!1.5 models
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> hide #!1.4 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.1 models
> hide #!1.1 models
> hide #!1 models
> show #!1 models
> show #!1.1 models
> show #!1.2 models
> show #!1.3 models
> show #!1.4 models
> show #!1.5 models
> show #!1.6 models
> show #!1.7 models
> show #!1.8 models
> show #!1.9 models
> select #1
1413 atoms, 1323 bonds, 128 pseudobonds, 135 residues, 20 models selected
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-55,97,100-179 #1.2/A:2-55,97,100-179 #1.3/A:2-55,97,100-179
> #1.4/A:2-55,97,100-179 #1.5/A:2-55,97,100-179 #1.6/A:2-55,97,100-179
> #1.7/A:2-55,97,100-179 #1.8/A:2-55,97,100-179 #1.9/A:2-55,97,100-179
765 atoms, 675 bonds, 108 pseudobonds, 117 residues, 18 models selected
> show sel surfaces
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> show sel atoms
Drag select of agrC_agr3vsAIP3.pdb_A SES surface, 2 of 26122 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 2 of 25992 triangles, agrC_agr3vsAIP3.pdb_A
SES surface, 2 of 25528 triangles, agrC_agr3vsAIP3.pdb_A SES surface, 2 of
25626 triangles, agrC_agr3vsAIP3.pdb_A SES surface, 2 of 25138 triangles,
agrC_agr3vsAIP3.pdb_A SES surface, 2 of 26408 triangles, agrC_agr3vsAIP3.pdb_A
SES surface, 2 of 26218 triangles, agrC_agr3vsAIP3.pdb_A SES surface, 2 of
25984 triangles, agrC_agr3vsAIP3.pdb_A SES surface, 2 of 26126 triangles, 36
atoms, 27 bonds
> hide sel atoms
> show sel surfaces
> select clear
> show #!2 models
> label @@display
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select clear
> hide #!1 models
> show #!1 models
> hide #!2 models
> select #1
1413 atoms, 1323 bonds, 128 pseudobonds, 135 residues, 29 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select clear
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
36 atoms, 27 bonds, 9 residues, 9 models selected
> select #1.1/A:1-55,97,100-179 #1.2/A:1-55,97,100-179 #1.3/A:1-55,97,100-179
> #1.4/A:1-55,97,100-179 #1.5/A:1-55,97,100-179 #1.6/A:1-55,97,100-179
> #1.7/A:1-55,97,100-179 #1.8/A:1-55,97,100-179 #1.9/A:1-55,97,100-179
801 atoms, 702 bonds, 117 pseudobonds, 126 residues, 18 models selected
> select clear
Drag select of agrC_agr3vsAIP3.pdb_A SES surface, 13 of 25138 triangles, 122
atoms, 128 bonds
> label delete sel
> select clear
> show #!2 models
> hide #!1.9 models
> hide #!1.8 models
> hide #!1.7 models
> hide #!1.5 models
> hide #!1.6 models
> hide #!1.4 models
> hide #!1.3 models
> hide #!1.2 models
> hide #!1.1 models
> show #!1.2 models
> show #!1.3 models
> hide #!1.2 models
> hide #!1.3 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.5 models
> show #!1.6 models
> hide #!1.5 models
> hide #!1.6 models
> show #!1.7 models
> hide #!1.7 models
> show #!1.8 models
> show #!1.9 models
> hide #!1.8 models
> save D:/docking/result/agrC_agr3_AIP3_2_all.cxs
> close #1.9
> close
> open D:/docking/out/220219/agrC_agr4vsAIP4.pdbqt
Summary of feedback from opening D:/docking/out/220219/agrC_agr4vsAIP4.pdbqt
---
warnings | Ignored bad PDB record found on line 2
REMARK VINA RESULT: -8.4 0.000 0.000
Ignored bad PDB record found on line 4
REMARK status: ('A' for Active; 'I' for Inactive)
Ignored bad PDB record found on line 5
REMARK 1 A between atoms: CA_1 and C_2
Ignored bad PDB record found on line 6
REMARK 2 A between atoms: CA_1 and N_19
Ignored bad PDB record found on line 7
REMARK 3 A between atoms: CA_1 and CB_20
2200 messages similar to the above omitted
Chain information for agrC_agr4vsAIP4.pdb
---
Chain | Description
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A | No description
available
Associated agrC_agr4vsAIP4.pdb (1.1) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.2) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.3) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.4) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.5) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.6) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.7) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.8) chain A to agrI with 0 mismatches
Associated agrC_agr4vsAIP4.pdb (1.9) chain A to agrI with 0 mismatches
Opened agrC_agr4vsAIP4.pdbqt containing 9 structures (1476 atoms, 1404 bonds)
> open D:/docking/protein/agrC_agr4/agrC_agr4_rigid.pdbqt
Chain information for agrC_agr4_rigid.pdb #2
---
Chain | Description
A | No description available
Associated agrC_agr4_rigid.pdb chain A to agrIV with 0 mismatches
Opened agrC_agr4_rigid.pdbqt containing 1 structures (4154 atoms, 4202 bonds)
> hide cartoons
> hide surfaces
> hide atoms
> show surfaces
> color byattribute seq_conservation palette bluered noValueColor silver key
> true
> key blue-white-red :-2.40 :-0.82 :0.76 showTool true
> ui mousemode right "color key"
5630 atoms, 565 residues, 10 surfaces, atom seq_conservation range -2.4 to
0.757
> ui mousemode right select
> hide #3 models
> transparency 50
> hide #!2 models
> ui tool show "Show Sequence Viewer"
> sequence chain #1.1/A #1.2/A #1.3/A #1.4/A #1.5/A #1.6/A #1.7/A #1.8/A
> #1.9/A
Alignment identifier is 1
> select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1
> #1.8/A:1 #1.9/A:1
783 atoms, 801 bonds, 9 pseudobonds, 18 residues, 18 models selected
> select #1.1/A:1-179 #1.2/A:1-179 #1.3/A:1-179 #1.4/A:1-179 #1.5/A:1-179
> #1.6/A:1-179 #1.7/A:1-179 #1.8/A:1-179 #1.9/A:1-179
1476 atoms, 1404 bonds, 126 pseudobonds, 135 residues, 18 models selected
> select #1.1/A:1-2 #1.2/A:1-2 #1.3/A:1-2 #1.4/A:1-2 #1.5/A:1-2 #1.6/A:1-2
> #1.7/A:1-2 #1.8/A:1-2 #1.9/A:1-2
837 atoms, 846 bonds, 18 pseudobonds, 27 residues, 18 models selected
> select #1.1/A:1-51 #1.2/A:1-51 #1.3/A:1-51 #1.4/A:1-51 #1.5/A:1-51
> #1.6/A:1-51 #1.7/A:1-51 #1.8/A:1-51 #1.9/A:1-51
1044 atoms, 1044 bonds, 45 pseudobonds, 54 residues, 18 models selected
> select #1.1/A:100 #1.2/A:100 #1.3/A:100 #1.4/A:100 #1.5/A:100 #1.6/A:100
> #1.7/A:100 #1.8/A:100 #1.9/A:100
72 atoms, 72 bonds, 9 residues, 9 models selected
> select #1.1/A:9-100 #1.2/A:9-100 #1.3/A:9-100 #1.4/A:9-100 #1.5/A:9-100
> #1.6/A:9-100 #1.7/A:9-100 #1.8/A:9-100 #1.9/A:9-100
306 atoms, 288 bonds, 36 pseudobonds, 45 residues, 18 models selected
> select #1.1/A:172-173 #1.2/A:172-173 #1.3/A:172-173 #1.4/A:172-173
> #1.5/A:172-173 #1.6/A:172-173 #1.7/A:172-173 #1.8/A:172-173 #1.9/A:172-173
99 atoms, 81 bonds, 9 pseudobonds, 18 residues, 18 models selected
> select #1.1/A:1-173 #1.2/A:1-173 #1.3/A:1-173 #1.4/A:1-173 #1.5/A:1-173
> #1.6/A:1-173 #1.7/A:1-173 #1.8/A:1-173 #1.9/A:1-173
1386 atoms, 1332 bonds, 108 pseudobonds, 117 residues, 18 models selected
> select #1.1/A:179 #1.2/A:179 #1.3/A:179 #1.4/A:179 #1.5/A:179 #1.6/A:179
> #1.7/A:179 #1.8/A:179 #1.9/A:179
45 atoms, 36 bonds, 9 residues, 9 models selected
> select #1.1/A:2-179 #1.2/A:2-179 #1.3/A:2-179 #1.4/A:2-179 #1.5/A:2-179
> #1.6/A:2-179 #1.7/A:2-179 #1.8/A:2-179 #1.9/A:2-179
693 atoms, 603 bonds, 108 pseudobonds, 117 residues, 18 models selected
> hide sel surfaces
Drag select of agrC_agr4vsAIP4.pdb_A SES surface, 14258 of 37280 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 13554 of 35696 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12075 of 33800 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 13857 of 35998 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 13498 of 35828 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 13819 of 35470 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 13790 of 36492 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 15041 of 37290 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 14050 of 35498 triangles
> show #!1.1-9 atoms
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-179 #1.2/A:2-179 #1.3/A:2-179 #1.4/A:2-179 #1.5/A:2-179
> #1.6/A:2-179 #1.7/A:2-179 #1.8/A:2-179 #1.9/A:2-179
693 atoms, 603 bonds, 108 pseudobonds, 117 residues, 18 models selected
> hide sel surfaces
> hide sel cartoons
> hide sel atoms
Drag select of agrC_agr4vsAIP4.pdb_A SES surface, 1496 of 37280 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1503 of 35696 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1270 of 33800 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1474 of 35998 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1423 of 35828 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1539 of 35470 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1312 of 36492 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1407 of 37290 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 1364 of 35498 triangles, 36 atoms, 27 bonds
> hide sel surfaces
> hide sel atoms
Drag select of agrC_agr4vsAIP4.pdb_A SES surface, 12762 of 37280 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12048 of 35696 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 10626 of 33800 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12377 of 35998 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 11938 of 35828 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12280 of 35470 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12327 of 36492 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 13513 of 37290 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12582 of 35498 triangles, 747 atoms, 774
bonds
> color sel green
> select clear
Drag select of agrC_agr4vsAIP4.pdb_A SES surface, 12762 of 37280 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12048 of 35696 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 10626 of 33800 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12377 of 35998 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 11938 of 35828 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12280 of 35470 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12327 of 36492 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 13513 of 37290 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 12582 of 35498 triangles, 747 atoms, 774
bonds
> hide sel surfaces
> select clear
Drag select of 747 atoms, 774 bonds
> hbonds sel reveal true log true
The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: agrC_agr4_rigid.pdb #2/A GLU 2 N; agrC_agr4_rigid.pdb #2/A PHE
51 N; agrC_agr4_rigid.pdb #2/A PHE 9 N; agrC_agr4_rigid.pdb #2/A ASP 55 N;
agrC_agr4_rigid.pdb #2/A ASN 5 N; agrC_agr4_rigid.pdb #2/A ILE 97 N;
agrC_agr4_rigid.pdb #2/A PHE 100 N; agrC_agr4_rigid.pdb #2/A ILE 110 N;
agrC_agr4_rigid.pdb #2/A SER 169 N; agrC_agr4_rigid.pdb #2/A ASN 172 N;
agrC_agr4_rigid.pdb #2/A ILE 179 N; agrC_agr4_rigid.pdb #2/A VAL 1 N;
agrC_agr4_rigid.pdb #2/A ASP 174 N; agrC_agr4_rigid.pdb #2/A SER 173 N
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1.1 agrC_agr4vsAIP4.pdb
1.2 agrC_agr4vsAIP4.pdb
1.3 agrC_agr4vsAIP4.pdb
1.4 agrC_agr4vsAIP4.pdb
1.5 agrC_agr4vsAIP4.pdb
1.6 agrC_agr4vsAIP4.pdb
1.7 agrC_agr4vsAIP4.pdb
1.8 agrC_agr4vsAIP4.pdb
1.9 agrC_agr4vsAIP4.pdb
2 agrC_agr4_rigid.pdb
34 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
agrC_agr4vsAIP4.pdb #1.1/A UNK 1 N agrC_agr4_rigid.pdb #2/A SER 169 O agrC_agr4vsAIP4.pdb #1.1/A UNK 1 H 3.159 2.143
agrC_agr4vsAIP4.pdb #1.1/A UNK 1 N agrC_agr4vsAIP4.pdb #1.1/A UNK 1 O agrC_agr4vsAIP4.pdb #1.1/A UNK 1 H 2.803 1.843
agrC_agr4vsAIP4.pdb #1.1/A UNK 1 N agrC_agr4vsAIP4.pdb #1.1/A ASP 55 OD1 agrC_agr4vsAIP4.pdb #1.1/A UNK 1 H2 2.956 2.013
agrC_agr4vsAIP4.pdb #1.1/A UNK 1 OH agrC_agr4_rigid.pdb #2/A GLN 16 OE1 agrC_agr4vsAIP4.pdb #1.1/A UNK 1 HH 2.703 1.779
agrC_agr4vsAIP4.pdb #1.1/A SER 173 OG agrC_agr4vsAIP4.pdb #1.1/A UNK 1 O agrC_agr4vsAIP4.pdb #1.1/A SER 173 HG 3.165 2.368
agrC_agr4vsAIP4.pdb #1.2/A UNK 1 N agrC_agr4_rigid.pdb #2/A GLN 170 OE1 agrC_agr4vsAIP4.pdb #1.2/A UNK 1 H 3.608 2.756
agrC_agr4vsAIP4.pdb #1.2/A UNK 1 N agrC_agr4vsAIP4.pdb #1.2/A UNK 1 O agrC_agr4vsAIP4.pdb #1.2/A UNK 1 H 2.904 2.042
agrC_agr4vsAIP4.pdb #1.2/A UNK 1 N agrC_agr4vsAIP4.pdb #1.2/A UNK 1 O agrC_agr4vsAIP4.pdb #1.2/A UNK 1 H 2.802 1.843
agrC_agr4vsAIP4.pdb #1.2/A SER 173 OG agrC_agr4vsAIP4.pdb #1.2/A UNK 1 O agrC_agr4vsAIP4.pdb #1.2/A SER 173 HG 2.943 2.277
agrC_agr4vsAIP4.pdb #1.3/A UNK 1 N agrC_agr4vsAIP4.pdb #1.3/A UNK 1 O agrC_agr4vsAIP4.pdb #1.3/A UNK 1 H 2.802 1.843
agrC_agr4vsAIP4.pdb #1.3/A UNK 1 O agrC_agr4_rigid.pdb #2/A TYR 168 O agrC_agr4vsAIP4.pdb #1.3/A UNK 1 H 2.773 1.849
agrC_agr4vsAIP4.pdb #1.4/A UNK 1 N agrC_agr4vsAIP4.pdb #1.4/A UNK 1 O agrC_agr4vsAIP4.pdb #1.4/A UNK 1 H 2.802 1.843
agrC_agr4vsAIP4.pdb #1.4/A UNK 1 N agrC_agr4vsAIP4.pdb #1.4/A ASP 55 OD2 agrC_agr4vsAIP4.pdb #1.4/A UNK 1 H2 2.989 2.007
agrC_agr4vsAIP4.pdb #1.4/A UNK 1 O agrC_agr4vsAIP4.pdb #1.4/A ASN 172 OD1 agrC_agr4vsAIP4.pdb #1.4/A UNK 1 H 3.136 2.265
agrC_agr4vsAIP4.pdb #1.5/A UNK 1 N agrC_agr4vsAIP4.pdb #1.5/A UNK 1 O agrC_agr4vsAIP4.pdb #1.5/A UNK 1 H 2.802 1.844
agrC_agr4vsAIP4.pdb #1.5/A UNK 1 N agrC_agr4_rigid.pdb #2/A ASN 93 OD1 agrC_agr4vsAIP4.pdb #1.5/A UNK 1 H1 2.958 2.177
agrC_agr4vsAIP4.pdb #1.5/A UNK 1 O agrC_agr4vsAIP4.pdb #1.5/A ASP 174 OD2 agrC_agr4vsAIP4.pdb #1.5/A UNK 1 H 3.037 2.262
agrC_agr4vsAIP4.pdb #1.5/A SER 173 OG agrC_agr4vsAIP4.pdb #1.5/A UNK 1 O agrC_agr4vsAIP4.pdb #1.5/A SER 173 HG 2.703 2.002
agrC_agr4vsAIP4.pdb #1.6/A UNK 1 N agrC_agr4vsAIP4.pdb #1.6/A UNK 1 O agrC_agr4vsAIP4.pdb #1.6/A UNK 1 H 2.803 1.844
agrC_agr4vsAIP4.pdb #1.6/A ASN 5 ND2 agrC_agr4vsAIP4.pdb #1.6/A UNK 1 O agrC_agr4vsAIP4.pdb #1.6/A ASN 5 1HD2 3.223 2.497
agrC_agr4vsAIP4.pdb #1.7/A UNK 1 N agrC_agr4vsAIP4.pdb #1.7/A UNK 1 O agrC_agr4vsAIP4.pdb #1.7/A UNK 1 H 2.803 1.844
agrC_agr4vsAIP4.pdb #1.7/A UNK 1 N agrC_agr4vsAIP4.pdb #1.7/A UNK 1 O agrC_agr4vsAIP4.pdb #1.7/A UNK 1 H2 2.873 1.952
agrC_agr4vsAIP4.pdb #1.7/A UNK 1 O agrC_agr4_rigid.pdb #2/A SER 169 O agrC_agr4vsAIP4.pdb #1.7/A UNK 1 H 2.971 2.194
agrC_agr4vsAIP4.pdb #1.8/A UNK 1 N agrC_agr4vsAIP4.pdb #1.8/A UNK 1 O agrC_agr4vsAIP4.pdb #1.8/A UNK 1 H 3.188 2.208
agrC_agr4vsAIP4.pdb #1.8/A UNK 1 N agrC_agr4vsAIP4.pdb #1.8/A UNK 1 O agrC_agr4vsAIP4.pdb #1.8/A UNK 1 H 2.802 1.843
agrC_agr4vsAIP4.pdb #1.9/A UNK 1 N agrC_agr4vsAIP4.pdb #1.9/A UNK 1 O agrC_agr4vsAIP4.pdb #1.9/A UNK 1 H 2.802 1.843
agrC_agr4_rigid.pdb #2/A SER 56 OG agrC_agr4vsAIP4.pdb #1.2/A UNK 1 O agrC_agr4_rigid.pdb #2/A SER 56 HG 3.539 2.924
agrC_agr4_rigid.pdb #2/A ASN 93 ND2 agrC_agr4vsAIP4.pdb #1.2/A UNK 1 O agrC_agr4_rigid.pdb #2/A ASN 93 1HD2 3.600 2.958
agrC_agr4_rigid.pdb #2/A ASN 93 ND2 agrC_agr4vsAIP4.pdb #1.3/A UNK 1 O agrC_agr4_rigid.pdb #2/A ASN 93 1HD2 2.861 1.997
agrC_agr4_rigid.pdb #2/A ASN 93 ND2 agrC_agr4vsAIP4.pdb #1.4/A UNK 1 O agrC_agr4_rigid.pdb #2/A ASN 93 1HD2 3.349 2.628
agrC_agr4_rigid.pdb #2/A ASN 93 ND2 agrC_agr4vsAIP4.pdb #1.5/A UNK 1 O agrC_agr4_rigid.pdb #2/A ASN 93 1HD2 2.887 2.028
agrC_agr4_rigid.pdb #2/A ASN 93 ND2 agrC_agr4vsAIP4.pdb #1.7/A UNK 1 O agrC_agr4_rigid.pdb #2/A ASN 93 1HD2 2.867 2.185
agrC_agr4_rigid.pdb #2/A ASN 93 ND2 agrC_agr4vsAIP4.pdb #1.9/A UNK 1 O agrC_agr4_rigid.pdb #2/A ASN 93 1HD2 2.798 1.926
agrC_agr4_rigid.pdb #2/A TYR 168 OH agrC_agr4vsAIP4.pdb #1.1/A UNK 1 O agrC_agr4_rigid.pdb #2/A TYR 168 HH 3.055 2.260
34 hydrogen bonds found
> select clear
> color #4 yellow models transparency 0
> select clear
> hide #4 models
> select #1.1/A:1-2 #1.2/A:1-2 #1.3/A:1-2 #1.4/A:1-2 #1.5/A:1-2 #1.6/A:1-2
> #1.7/A:1-2 #1.8/A:1-2 #1.9/A:1-2
837 atoms, 846 bonds, 30 pseudobonds, 27 residues, 19 models selected
> select #1.1/A:1-179 #1.2/A:1-179 #1.3/A:1-179 #1.4/A:1-179 #1.5/A:1-179
> #1.6/A:1-179 #1.7/A:1-179 #1.8/A:1-179 #1.9/A:1-179
1476 atoms, 1404 bonds, 146 pseudobonds, 135 residues, 19 models selected
> show sel atoms
> select clear
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
> select clear
Drag select of 9 pseudobonds
> hide sel
> select clear
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
> select clear
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
Drag select of 9 pseudobonds
> hide sel
> select clear
> hide sel
> select clear
> hide sel
> select clear
> hide sel
> select #1.1/A:2 #1.2/A:2 #1.3/A:2 #1.4/A:2 #1.5/A:2 #1.6/A:2 #1.7/A:2
> #1.8/A:2 #1.9/A:2
54 atoms, 45 bonds, 9 residues, 9 models selected
> select #1.1/A:2-179 #1.2/A:2-179 #1.3/A:2-179 #1.4/A:2-179 #1.5/A:2-179
> #1.6/A:2-179 #1.7/A:2-179 #1.8/A:2-179 #1.9/A:2-179
693 atoms, 603 bonds, 108 pseudobonds, 117 residues, 18 models selected
> show sel surfaces
> select clear
Drag select of 36 atoms, 27 bonds
> show sel surfaces
> select clear
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> hide #!1.6 models
> hide #!1.7 models
> hide #!1.8 models
> hide #!1.9 models
> show #4 models
> select clear
> hide sel
> hide #!1.1 models
> show #!1.2 models
> select clear
> hide sel
> hide #!1.2 models
> show #!1.3 models
> hide sel
> show #!1.4 models
> hide #!1.3 models
> hide sel
> show #!1.5 models
> hide #!1.4 models
> hide sel
> show #!1.6 models
> hide #!1.5 models
> select clear
> hide sel
> show #!1.7 models
> hide #!1.6 models
> hide sel
> show #!1.8 models
> hide #!1.7 models
> select clear
> hide sel
> select clear
> hide sel
> show #!1.9 models
> hide #!1.8 models
> hide sel
> hide #!1.9 models
> show #!2 models
> show #!1.1 models
> show #!1.2 models
> show #!1.3 models
> show #!1.4 models
> show #!1.5 models
> show #!1.6 models
> show #!1.7 models
> show #!1.8 models
> show #!1.9 models
> label @@display
> select clear
> hide #!2 models
Drag select of agrC_agr4vsAIP4.pdb_A SES surface, 6 of 33800 triangles,
agrC_agr4vsAIP4.pdb_A SES surface, 8 of 35828 triangles, agrC_agr4vsAIP4.pdb_A
SES surface, 20 of 36492 triangles, 119 atoms, 137 bonds
> label delete sel
> select clear
> hide #!1.2 models
> hide #!1.3 models
> hide #!1.4 models
> hide #!1.5 models
> hide #!1.6 models
> hide #!1.7 models
> hide #!1.8 models
> hide #!1.9 models
> show #!2 models
> hide #!1.1 models
> show #!1.2 models
> hide #!1.2 models
> show #!1.3 models
> hide #!1.3 models
> show #!1.4 models
> hide #!1.4 models
> show #!1.5 models
> show #!1.6 models
> hide #!1.5 models
> show #!1.7 models
> hide #!1.6 models
> show #!1.8 models
> hide #!1.7 models
> hide #!1.8 models
> show #!1.9 models
Drag select of agrC_agr4vsAIP4.pdb_A SES surface, 832 of 35498 triangles,
agrC_agr4_rigid.pdb_A SES surface, 3425 of 493142 triangles, 11 atoms, 9 bonds
> select clear
> save D:/docking/result/agrC_agr4_AIP4_2_all.cxs
> close #1.9
> close
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 27.20.100.8854
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel
Manufacturer: Dell Inc.
Model: Inspiron 7472
OS: Microsoft Windows 10 Home (Build 19043)
Memory: 8,482,263,040
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-8250U CPU @ 1.60GHz
OSLanguage: ja-JP
Locale: ('ja_JP', 'cp932')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (1)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
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