Changes between Initial Version and Version 1 of Ticket #5578, comment 7


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Timestamp:
Nov 17, 2021, 11:09:32 PM (4 years ago)
Author:
Tom Goddard

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  • Ticket #5578, comment 7

    initial v1  
    55$ qsub -q gpu.q -cwd -l h_rt=12:00:00 -l compute_cap=37,gpu_mem=10000M -S /usr/bin/python3 ./run_af21.py --fasta_paths=6wxq.fasta --model_preset=multimer --is_prokaryote_list=true
    66}}}
     7
     8Failed after an hour due to an AlphaFold docker error where it needs cuda 11.1 but only requests cuda 11.0.  (https://github.com/deepmind/alphafold/issues/224)  I will rebuild the singularity image to fix this as suggested in the AlphaFold bug report.