Changes between Initial Version and Version 1 of Ticket #5578, comment 5


Ignore:
Timestamp:
Nov 10, 2021, 8:36:31 PM (4 years ago)
Author:
Tom Goddard

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #5578, comment 5

    initial v1  
    1616
    1717
     18{{{
     19$ python3 run_af21.py --fasta_paths=test.fasta
    1820
     21$ env CUDA_VISIBLE_DEVICES=0 TF_FORCE_\
     22UNIFIED_MEMORY=1 XLA_PYTHON_CLIENT_MEM_FRACTION=4.0 singularity run --nv -B "/w\
     23ynton/group/databases/alphafold_CASP14" -B "/wynton/home/ferrin/goddard/alphafo\
     24ld_singularity" /wynton/home/ferrin/goddard/alphafold_singularity/alphafold21.s\
     25if --fasta_paths=test.fasta --uniref90_database_path=/wynton/group/databases/al\
     26phafold_CASP14/uniref90/uniref90.fasta --mgnify_database_path=/wynton/group/dat\
     27abases/alphafold_CASP14/mgnify/mgy_clusters_2018_12.fa --data_dir=/wynton/group\
     28/databases/alphafold_CASP14 --template_mmcif_dir=/wynton/group/databases/alphaf\
     29old_CASP14/pdb_mmcif/mmcif_files --obsolete_pdbs_path=/wynton/group/databases/a\
     30lphafold_CASP14/pdb_mmcif/obsolete.dat --pdb70_database_path=/wynton/group/data\
     31bases/alphafold_CASP14/pdb70/pdb70 --uniclust30_database_path=/wynton/group/dat\
     32abases/alphafold_CASP14/uniclust30/uniclust30_2018_08/uniclust30_2018_08 --bfd_\
     33database_path=/wynton/group/databases/alphafold_CASP14/bfd/bfd_metaclust_clu_co\
     34mplete_id30_c90_final_seq.sorted_opt --output_dir=/wynton/home/ferrin/goddard/a\
     35lphafold_singularity/output --max_template_date=2100-01-01 --db_preset=full_dbs\
     36 --model_preset=monomer --benchmark=False --use_precomputed_msas=False --logtos\
     37tderr
     38}}}
     39