Changes between Initial Version and Version 1 of Ticket #4185


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Timestamp:
Jan 28, 2021, 10:38:48 AM (5 years ago)
Author:
Eric Pettersen
Comment:

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  • Ticket #4185

    • Property Cc chimera-programmers added
    • Property Component Unassigned → Core
    • Property Milestone → 1.3
    • Property Owner set to Greg Couch
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Problem with multiprocessing scripts

  • Ticket #4185 – Description

    initial v1  
    2424    for thread in thread_list:
    2525        thread.join()
     26
     27Which does not work beacause the scripts are executed in a sandbox
     28
     29
     30
     31Log:
     32UCSF ChimeraX version: 1.2.dev202101090324 (2021-01-09) 
     33© 2016-2020 Regents of the University of California. All rights reserved. 
     34How to cite UCSF ChimeraX 
     35
     36> help help:contact.html
     37
     38> ui tool show Shell
     39
     40Populating font family aliases took 868 ms. Replace uses of missing font
     41family "Monospace" with one that exists to avoid this cost. 
     42
     43
     44
     45
     46OpenGL version: 4.1 ATI-4.2.13
     47OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine
     48OpenGL vendor: ATI Technologies Inc.Hardware:
     49
     50    Hardware Overview:
     51
     52      Model Name: MacBook Pro
     53      Model Identifier: MacBookPro14,3
     54      Processor Name: Quad-Core Intel Core i7
     55      Processor Speed: 2.9 GHz
     56      Number of Processors: 1
     57      Total Number of Cores: 4
     58      L2 Cache (per Core): 256 KB
     59      L3 Cache: 8 MB
     60      Hyper-Threading Technology: Enabled
     61      Memory: 16 GB
     62      System Firmware Version: 429.60.3.0.0
     63      SMC Version (system): 2.45f4
     64
     65Software:
     66
     67    System Software Overview:
     68
     69      System Version: macOS 11.1 (20C69)
     70      Kernel Version: Darwin 20.2.0
     71      Time since boot: 20 days 6:21
     72
     73Graphics/Displays:
     74
     75    Intel HD Graphics 630:
     76
     77      Chipset Model: Intel HD Graphics 630
     78      Type: GPU
     79      Bus: Built-In
     80      VRAM (Dynamic, Max): 1536 MB
     81      Vendor: Intel
     82      Device ID: 0x591b
     83      Revision ID: 0x0004
     84      Automatic Graphics Switching: Supported
     85      gMux Version: 4.0.29 [3.2.8]
     86      Metal Family: Supported, Metal GPUFamily macOS 2
     87
     88    Radeon Pro 560:
     89
     90      Chipset Model: Radeon Pro 560
     91      Type: GPU
     92      Bus: PCIe
     93      PCIe Lane Width: x8
     94      VRAM (Total): 4 GB
     95      Vendor: AMD (0x1002)
     96      Device ID: 0x67ef
     97      Revision ID: 0x00c0
     98      ROM Revision: 113-C980AJ-927
     99      VBIOS Version: 113-C9801AU-A02
     100      EFI Driver Version: 01.A0.927
     101      Automatic Graphics Switching: Supported
     102      gMux Version: 4.0.29 [3.2.8]
     103      Metal Family: Supported, Metal GPUFamily macOS 2
     104      Displays:
     105        Color LCD:
     106          Display Type: Built-In Retina LCD
     107          Resolution: 2880 x 1800 Retina
     108          Framebuffer Depth: 24-Bit Color (ARGB8888)
     109          Main Display: Yes
     110          Mirror: Off
     111          Online: Yes
     112          Automatically Adjust Brightness: Yes
     113          Connection Type: Internal
     114        BenQ PD3200U:
     115          Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
     116          UI Looks like: 2560 x 1440 @ 60.00Hz
     117          Framebuffer Depth: 30-Bit Color (ARGB2101010)
     118          Display Serial Number: S9H01523019
     119          Mirror: Off
     120          Online: Yes
     121          Rotation: Supported
     122          Automatically Adjust Brightness: No
     123          Connection Type: Thunderbolt/DisplayPort
     124          Television: Yes
     125
     126Locale: (None, 'UTF-8')
     127PySide2 version: 5.15.2
     128Qt version: 5.15.2
     129Installed Packages:
     130    alabaster: 0.7.12
     131    appdirs: 1.4.4
     132    appnope: 0.1.2
     133    Babel: 2.9.0
     134    backcall: 0.2.0
     135    blockdiag: 2.0.1
     136    certifi: 2020.12.5
     137    cftime: 1.3.0
     138    chardet: 3.0.4
     139    ChimeraX-AddH: 2.1.3
     140    ChimeraX-AlignmentAlgorithms: 2.0
     141    ChimeraX-AlignmentHdrs: 3.2
     142    ChimeraX-AlignmentMatrices: 2.0
     143    ChimeraX-Alignments: 2.1
     144    ChimeraX-Arrays: 1.0
     145    ChimeraX-Atomic: 1.10.4
     146    ChimeraX-AtomicLibrary: 1.1.1
     147    ChimeraX-AtomSearch: 2.0
     148    ChimeraX-AtomSearchLibrary: 1.0
     149    ChimeraX-AxesPlanes: 2.0
     150    ChimeraX-BasicActions: 1.1
     151    ChimeraX-BILD: 1.0
     152    ChimeraX-BlastProtein: 1.1
     153    ChimeraX-BondRot: 2.0
     154    ChimeraX-BugReporter: 1.0
     155    ChimeraX-BuildStructure: 2.2
     156    ChimeraX-Bumps: 1.0
     157    ChimeraX-BundleBuilder: 1.1
     158    ChimeraX-ButtonPanel: 1.0
     159    ChimeraX-CageBuilder: 1.0
     160    ChimeraX-CellPack: 1.0
     161    ChimeraX-Centroids: 1.1
     162    ChimeraX-ChemGroup: 2.0
     163    ChimeraX-Clashes: 2.1
     164    ChimeraX-ColorActions: 1.0
     165    ChimeraX-ColorGlobe: 1.0
     166    ChimeraX-CommandLine: 1.1.3
     167    ChimeraX-ConnectStructure: 2.0
     168    ChimeraX-Contacts: 1.0
     169    ChimeraX-Core: 1.2.dev202101090324
     170    ChimeraX-CoreFormats: 1.0
     171    ChimeraX-coulombic: 1.0.3
     172    ChimeraX-Crosslinks: 1.0
     173    ChimeraX-Crystal: 1.0
     174    ChimeraX-DataFormats: 1.1
     175    ChimeraX-Dicom: 1.0
     176    ChimeraX-DistMonitor: 1.1
     177    ChimeraX-DistUI: 1.0
     178    ChimeraX-Dssp: 2.0
     179    ChimeraX-EMDB-SFF: 1.0
     180    ChimeraX-ExperimentalCommands: 1.0
     181    ChimeraX-FileHistory: 1.0
     182    ChimeraX-FunctionKey: 1.0
     183    ChimeraX-Geometry: 1.1
     184    ChimeraX-gltf: 1.0
     185    ChimeraX-Graphics: 1.0
     186    ChimeraX-Hbonds: 2.1
     187    ChimeraX-Help: 1.0
     188    ChimeraX-HKCage: 1.3
     189    ChimeraX-IHM: 1.0
     190    ChimeraX-ImageFormats: 1.1
     191    ChimeraX-IMOD: 1.0
     192    ChimeraX-IO: 1.0
     193    ChimeraX-Label: 1.0
     194    ChimeraX-ListInfo: 1.1
     195    ChimeraX-Log: 1.1.1
     196    ChimeraX-LookingGlass: 1.1
     197    ChimeraX-Maestro: 1.8.1
     198    ChimeraX-Map: 1.0.2
     199    ChimeraX-MapData: 2.0
     200    ChimeraX-MapEraser: 1.0
     201    ChimeraX-MapFilter: 2.0
     202    ChimeraX-MapFit: 2.0
     203    ChimeraX-MapSeries: 2.0
     204    ChimeraX-Markers: 1.0
     205    ChimeraX-Mask: 1.0
     206    ChimeraX-MatchMaker: 1.1
     207    ChimeraX-MDcrds: 2.2
     208    ChimeraX-MedicalToolbar: 1.0.1
     209    ChimeraX-Meeting: 1.0
     210    ChimeraX-MLP: 1.0
     211    ChimeraX-mmCIF: 2.2
     212    ChimeraX-MMTF: 2.0
     213    ChimeraX-Modeller: 1.0
     214    ChimeraX-ModelPanel: 1.0
     215    ChimeraX-ModelSeries: 1.0
     216    ChimeraX-Mol2: 2.0
     217    ChimeraX-Morph: 1.0
     218    ChimeraX-MouseModes: 1.0
     219    ChimeraX-Movie: 1.0
     220    ChimeraX-Neuron: 1.0
     221    ChimeraX-Nucleotides: 2.0
     222    ChimeraX-OpenCommand: 1.4
     223    ChimeraX-PDB: 2.2
     224    ChimeraX-PDBBio: 1.0
     225    ChimeraX-PDBLibrary: 1.0
     226    ChimeraX-PickBlobs: 1.0
     227    ChimeraX-Positions: 1.0
     228    ChimeraX-PresetMgr: 1.0.1
     229    ChimeraX-PubChem: 2.0.1
     230    ChimeraX-Read-Pbonds: 1.0
     231    ChimeraX-Registration: 1.1
     232    ChimeraX-RemoteControl: 1.0
     233    ChimeraX-ResidueFit: 1.0
     234    ChimeraX-RestServer: 1.1
     235    ChimeraX-RNALayout: 1.0
     236    ChimeraX-RotamerLibMgr: 2.0
     237    ChimeraX-RotamerLibsDunbrack: 2.0
     238    ChimeraX-RotamerLibsDynameomics: 2.0
     239    ChimeraX-RotamerLibsRichardson: 2.0
     240    ChimeraX-SaveCommand: 1.3
     241    ChimeraX-SchemeMgr: 1.0
     242    ChimeraX-SDF: 2.0
     243    ChimeraX-Segger: 1.0
     244    ChimeraX-Segment: 1.0
     245    ChimeraX-SeqView: 2.3
     246    ChimeraX-Shape: 1.0.1
     247    ChimeraX-Shell: 1.0
     248    ChimeraX-Shortcuts: 1.0
     249    ChimeraX-ShowAttr: 1.0
     250    ChimeraX-ShowSequences: 1.0
     251    ChimeraX-SideView: 1.0
     252    ChimeraX-Smiles: 2.0.1
     253    ChimeraX-SmoothLines: 1.0
     254    ChimeraX-SpaceNavigator: 1.0
     255    ChimeraX-StdCommands: 1.2.2
     256    ChimeraX-STL: 1.0
     257    ChimeraX-Storm: 1.0
     258    ChimeraX-Struts: 1.0
     259    ChimeraX-Surface: 1.0
     260    ChimeraX-SwapAA: 2.0
     261    ChimeraX-SwapRes: 2.0
     262    ChimeraX-TapeMeasure: 1.0
     263    ChimeraX-Test: 1.0
     264    ChimeraX-Toolbar: 1.0
     265    ChimeraX-ToolshedUtils: 1.1
     266    ChimeraX-Tug: 1.0
     267    ChimeraX-UI: 1.3.2
     268    ChimeraX-uniprot: 2.1
     269    ChimeraX-ViewDockX: 1.0
     270    ChimeraX-Vive: 1.1
     271    ChimeraX-VolumeMenu: 1.0
     272    ChimeraX-VTK: 1.0
     273    ChimeraX-WavefrontOBJ: 1.0
     274    ChimeraX-WebCam: 1.0
     275    ChimeraX-WebServices: 1.0
     276    ChimeraX-Zone: 1.0
     277    colorama: 0.4.3
     278    comtypes: 1.1.7
     279    cxservices: 1.0
     280    cycler: 0.10.0
     281    Cython: 0.29.21
     282    decorator: 4.4.2
     283    distlib: 0.3.1
     284    docutils: 0.16
     285    filelock: 3.0.12
     286    funcparserlib: 0.3.6
     287    grako: 3.16.5
     288    h5py: 2.10.0
     289    html2text: 2020.1.16
     290    idna: 2.10
     291    ihm: 0.17
     292    imagecodecs: 2020.5.30
     293    imagesize: 1.2.0
     294    ipykernel: 5.3.4
     295    ipython: 7.18.1
     296    ipython-genutils: 0.2.0
     297    jedi: 0.17.2
     298    Jinja2: 2.11.2
     299    jupyter-client: 6.1.7
     300    jupyter-core: 4.7.0
     301    kiwisolver: 1.3.1
     302    line-profiler: 2.1.2
     303    lxml: 4.5.2
     304    lz4: 3.1.0
     305    MarkupSafe: 1.1.1
     306    matplotlib: 3.3.2
     307    msgpack: 1.0.0
     308    netCDF4: 1.5.4
     309    networkx: 2.5
     310    numexpr: 2.7.2
     311    numpy: 1.19.2
     312    numpydoc: 1.1.0
     313    openvr: 1.14.1501
     314    packaging: 20.8
     315    ParmEd: 3.2.0
     316    parso: 0.7.1
     317    pexpect: 4.8.0
     318    pickleshare: 0.7.5
     319    Pillow: 7.2.0
     320    pip: 20.3.1
     321    pkginfo: 1.5.0.1
     322    prompt-toolkit: 3.0.10
     323    psutil: 5.7.2
     324    ptyprocess: 0.7.0
     325    pycollada: 0.7.1
     326    pydicom: 2.0.0
     327    Pygments: 2.7.1
     328    PyOpenGL: 3.1.5
     329    PyOpenGL-accelerate: 3.1.5
     330    pyparsing: 2.4.7
     331    PySide2: 5.15.2
     332    python-dateutil: 2.8.1
     333    pytz: 2020.5
     334    pyzmq: 20.0.0
     335    qtconsole: 4.7.7
     336    QtPy: 1.9.0
     337    RandomWords: 0.3.0
     338    requests: 2.24.0
     339    scipy: 1.5.2
     340    setuptools: 50.3.2
     341    sfftk-rw: 0.6.7.dev1
     342    shiboken2: 5.15.2
     343    six: 1.15.0
     344    snowballstemmer: 2.0.0
     345    sortedcontainers: 2.2.2
     346    Sphinx: 3.2.1
     347    sphinxcontrib-applehelp: 1.0.2
     348    sphinxcontrib-blockdiag: 2.0.0
     349    sphinxcontrib-devhelp: 1.0.2
     350    sphinxcontrib-htmlhelp: 1.0.3
     351    sphinxcontrib-jsmath: 1.0.1
     352    sphinxcontrib-qthelp: 1.0.3
     353    sphinxcontrib-serializinghtml: 1.1.4
     354    suds-jurko: 0.6
     355    tables: 3.6.1
     356    tifffile: 2020.9.3
     357    tinyarray: 1.2.3
     358    tornado: 6.1
     359    traitlets: 5.0.5
     360    urllib3: 1.25.11
     361    wcwidth: 0.2.5
     362    webcolors: 1.11.1
     363    wheel: 0.36.0
     364    wheel-filename: 1.2.0
     365
     366}}}