Opened 6 years ago

Last modified 6 years ago

#2459 assigned enhancement

Add smoothing option to fitmap command — at Initial Version

Reported by: olibclarke@… Owned by: Tom Goddard
Priority: moderate Milestone:
Component: Volume Data Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Begin forwarded message:

From: Oliver Clarke <olibclarke@…>
Subject: [Chimera-users] Gaussian filter prior to fitmap?
Date: October 1, 2019 at 5:50:12 AM PDT
To: UCSF Chimera Mailing List <chimera-users@…>

Hi,

Would it be possible to add an option to fitmap (in either/both chimera/chimerax) to restrict the spatial frequencies used for fitting? That is, to fit gaussian filtered versions of the input maps behind the scenes, but apply the resulting transform to the unfiltered maps? Filtering maps to say 15 Å gives a much better radius of convergence in my experience - much less prone to getting stuck in local minima.

...

Cheers
Oli

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