![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 12 days ago
Last modified 11 days ago
#19112 closed defect
ChimeraX bug report submission — at Initial Version
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-15.6-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001f468e0c0 (most recent call first):
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 315 in event_loop
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1003 in init
File "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1166 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 59)
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{
"uptime" : 930000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac13,1",
"coalitionID" : 13033,
"osVersion" : {
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"build" : "24G84",
"releaseType" : "User"
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"captureTime" : "2025-10-12 10:51:43.0871 -0400",
"codeSigningMonitor" : 1,
"incident" : "AD50BB20-611C-4D24-BA37-A7CBEDF640D9",
"pid" : 29427,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-10-12 08:59:22.3513 -0400",
"procStartAbsTime" : 22214897104448,
"procExitAbsTime" : 22376671137401,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.8.0","CFBundleVersion":"1.8.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"F5319B2A-99FE-5DFC-A089-2820E639FE6C","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "216F332D-5F24-FDDF-13EF-8C5782DCD983",
"appleIntelligenceStatus" : {"state":"available"},
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRm+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkZDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "24D8D3A7-C4F6-4C7F-A280-CCB2E8DEEDD6",
"sip" : "enabled",
"vmRegionInfo" : "0x2906450e9138 is not in any region. Bytes after previous region: 44625868788025 Bytes before following region: 60446211141320\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000001, 0x00002906450e9138","rawCodes":[1,45106905125176],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x00002906450e9138"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":29427},
"vmregioninfo" : "0x2906450e9138 is not in any region. Bytes after previous region: 44625868788025 Bytes before following region: 60446211141320\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL reserved VM address space (unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600020000000 [512.0M] rw-\/rwx SM=PRV ",
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"vmSummary" : "ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=57.1G written=855.7M(1%) resident=29.3M(0%) swapped_out=826.4M(1%) unallocated=56.3G(99%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 304K 13 \nColorSync 624K 33 \nCoreAnimation 1760K 107 \nCoreGraphics 64K 4 \nCoreUI image data 5680K 51 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 48.1G 589 \nMALLOC guard page 288K 18 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.8M 50 \nStack 168.7M 50 \nVM_ALLOCATE 8.6G 5265 \nVM_ALLOCATE (reserved) 160.0M 2 reserved VM address space (unallocated)\n__AUTH 5521K 695 \n__AUTH_CONST 77.4M 942 \n__CTF 824 1 \n__DATA 34.2M 1088 \n__DATA_CONST 37.0M 1103 \n__DATA_DIRTY 2777K 342 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 648.4M 155 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1082 \n__TEXT (graphics) 22.5M 41 \n__TPRO_CONST 128K 2 \ndyld private memory 1696K 16 \nmapped file 518.7M 69 \npage table in kernel 29.3M 1 \nshared memory 3280K 31 \n=========== ======= ======= \nTOTAL 59.8G 11767 \nTOTAL, minus reserved VM space 59.7G 11767 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "41018a8d6850c30f86fc703849a8521025507e3e",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "64c17a9925d75a7281053d4c",
"factorPackIds" : {
"SIRI_AUDIO_DISABLE_MEDIA_ENTITY_SYNC" : "64d29746ad29a465b3bbeace"
},
"deploymentId" : 240000002
},
{
"rolloutId" : "6434420a89ec2e0a7a38bf5a",
"factorPackIds" : {
},
"deploymentId" : 240000011
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Volumes/Lab Backup/Jun Liu Lab 2025/Application/Application
> Japan/To_Japan/To Osaka/Document/Work with
> Jenny/Presentations/HP_Movie/From-Lab-laptop/For-Osaka-Movie.cxs"
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
level 0.0446, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #1, grid size 220,220,220, pixel 4.3, shown at
level 0.000693, step 1, values float32
Opened Top-middle.mrc as #7, grid size 240,240,240, pixel 2.1, shown at level
0.000178, step 1, values float32
Opened Top-middle.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Log from Fri Oct 10 16:39:33 2025UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Desktop/For-Osaka.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
level 0.0446, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #1, grid size 220,220,220, pixel 4.3, shown at
level 0.000693, step 1, values float32
Opened Top-middle.mrc as #7, grid size 240,240,240, pixel 2.1, shown at level
0.000178, step 1, values float32
Opened Top-middle.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Log from Tue Oct 7 16:41:24 2025UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Volumes/Lab Backup/Jun Liu Lab 2025/Poster/2025_MB/All-
> model_HP_for_Topcage_Poster.cxs"
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
level 0.0446, step 1, values float32
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.143, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #1, grid size 220,220,220, pixel 4.3, shown at
level 0.000693, step 1, values float32
Opened Top-middle.mrc as #7, grid size 240,240,240, pixel 2.1, shown at level
0.000178, step 1, values float32
Opened Top-middle.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened Top-middle.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Log from Mon Sep 8 16:24:57 2025UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Desktop/All-model_HP_for_Topcage.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
level 2.81, step 1, values float32
Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
level 0.0446, step 1, values float32
Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.162, step 1, values float32
Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.127, step 1, values float32
Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
0.0467, step 1, values float32
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.143, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #1, grid size 220,220,220, pixel 4.3, shown at
level 0.000693, step 1, values float32
Log from Mon Sep 8 12:14:54 2025UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Desktop/Final-ver5_-10032024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
level 2.81, step 1, values float32
Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
level 0.0446, step 1, values float32
Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.162, step 1, values float32
Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.127, step 1, values float32
Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
0.0467, step 1, values float32
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.143, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #1, grid size 220,220,220, pixel 4.3, shown at
level 0.000693, step 1, values float32
Log from Fri Oct 4 17:19:37 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-
> view4top-09042024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
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Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Log from Wed Sep 4 21:55:24 2024UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-
> view3-08222024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
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Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.162, step 1, values float32
Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.127, step 1, values float32
Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
0.0467, step 1, values float32
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.143, step 1, values float32
Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Log from Thu Aug 22 13:00:43 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-view3.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
level 2.81, step 1, values float32
Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
level 0.0446, step 1, values float32
Opened FliL.mrc copy as #101, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #102, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.162, step 1, values float32
Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.127, step 1, values float32
Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
0.0467, step 1, values float32
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.143, step 1, values float32
Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Log from Tue Jul 9 07:42:16 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure2.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
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Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
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Opened FliL.mrc copy as #102, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
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0.162, step 1, values float32
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at level 0.127, step 1, values float32
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0.0467, step 1, values float32
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Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
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shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
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shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
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Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
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Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Log from Fri Jul 5 20:17:51 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure2.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
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Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Log from Fri Jul 5 19:02:42 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
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Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened PflA-2.1A-230911.mrc as #167, grid size 240,240,240, pixel 2.1, shown
at level 0.956, step 1, values float32
Opened HP-PflA-PflB-2.1A.mrc as #168, grid size 240,240,240, pixel 2.14, shown
at level 4.32, step 1, values float32
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.0868, step 1, values float32
Log from Fri Jul 5 13:48:53 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> set bgColor #ffffff00
Log from Wed Jul 3 12:25:35 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/HP_Model_FlgY_Ver4-fitting.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
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Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Opened PflA-2.1A-230911.mrc as #167, grid size 240,240,240, pixel 2.1, shown
at level 0.956, step 1, values float32
Opened HP-PflA-PflB-2.1A.mrc as #168, grid size 240,240,240, pixel 2.14, shown
at level 4.32, step 1, values float32
Log from Tue Jul 2 19:24:30 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/HP_Model_FlgY_Ver4.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
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Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.162, step 1, values float32
Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.127, step 1, values float32
Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
0.0467, step 1, values float32
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.143, step 1, values float32
Opened MotB_new.mrc as #72, grid size 240,240,240, pixel 2.1, shown at level
0.0995, step 1, values float32
Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Log from Tue Jul 2 16:30:21 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Desktop/HP_Model_FlgY_Ver4.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0702, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0323, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
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Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
0.0732, step 1, values float32
Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.162, step 1, values float32
Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.127, step 1, values float32
Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
0.0467, step 1, values float32
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.143, step 1, values float32
Opened MotB_new.mrc as #72, grid size 240,240,240, pixel 2.1, shown at level
0.0995, step 1, values float32
Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
level 0.162, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at level 0.15, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
level 0.0467, step 1, values float32
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.0995, step 1, values float32
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at level
0.162, step 1, values float32
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at level 2.81, step 1, values float32
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.0425, step 1, values float32
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at level 0.0105, step 1, values float32
Log from Tue Jul 2 15:40:56 2024UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver3_FlgY_2024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
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Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
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Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
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Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
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4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.143, step 1, values float32
Log from Mon Jul 1 22:18:22 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> set bgColor #ffffff00
Log from Mon Jul 1 19:41:19 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver2_FlgY_2024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
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Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
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Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
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4.2, shown at level 0.015, step 1, values float32
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Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at level
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Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
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Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
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0.162, step 1, values float32
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at level 0.127, step 1, values float32
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0.143, step 1, values float32
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Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
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Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
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shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
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Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
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shown at level 0.127, step 1, values float32
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shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
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shown at level 0.127, step 1, values float32
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shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
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shown at level 0.127, step 1, values float32
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at level 0.127, step 1, values float32
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Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
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Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
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Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
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Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
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4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00437, step 1, values float32
Log from Sun Jun 30 10:10:34 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver6_2024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
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0.091, step 1, values float32
Opened PflB.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at level
0.091, step 1, values float32
Opened PflB.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at level
0.091, step 1, values float32
Opened PflB.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at level
0.091, step 1, values float32
Opened MotBpg.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #142, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #143, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #144, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #145, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #146, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #147, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #148, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #149, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #150, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #151, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #152, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #153, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #154, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #155, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #156, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened MotBpg.mrc copy as #157, grid size 240,240,240, pixel 2.1, shown at
level 0.095, step 1, values float32
Opened Top_Cage.mrc copy as #158, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #159, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #160, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #161, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #162, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #163, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #164, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #165, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #166, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #167, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #168, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #169, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #170, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #171, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #172, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #173, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #174, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Top_Cage.mrc copy as #175, grid size 240,240,240, pixel 2.1, shown at
level 0.0418, step 1, values float32
Opened Unknown.mrc copy as #176, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #178, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #179, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #180, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #181, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #182, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #183, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #184, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #185, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #186, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #187, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #188, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #189, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #190, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #191, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #192, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #193, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Unknown.mrc copy as #194, grid size 240,240,240, pixel 2.1, shown at
level 0.0956, step 1, values float32
Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at level
0.0891, step 1, values float32
Log from Thu Jun 13 21:33:25 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver5_2024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
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Opened 1x_Cage-units.mrc copy as #70, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #71, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #72, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
level 0.481, step 1, values float32
Log from Wed Jun 12 09:30:40 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver3_2024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened Cage-top-Model2.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #3, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #4, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #5, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #6, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #10, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #11, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #12, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #13, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #14, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #15, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #17, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #18, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #19, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #20, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #21, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened 1x_Cage-units.mrc as #68, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #70, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #71, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #72, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
level 0.481, step 1, values float32
Log from Tue Jun 11 22:15:39 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_2024.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened 1x_Cage-units.mrc as #68, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #70, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #71, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #72, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Opened 1x_Cage-units.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown
at level 0.000178, step 1, values float32
Log from Tue Jun 11 19:04:10 2024UCSF ChimeraX version: 1.7 (2023-12-19)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-
> Structural_Seminar_2024/H.pylori_Movie_Hight-resolution_model.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Wed Mar 13 09:49:54 2024UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated7-Nov-32023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened Cage-top-Model2.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #3, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #4, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #5, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #6, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #10, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #11, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #12, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #13, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #14, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #15, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #17, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #18, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #19, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #20, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #21, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Sat Nov 4 16:03:20 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated7-Nov-32023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
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pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Sat Nov 4 15:06:51 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated7-Nov-32023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened Cage-top-Model2.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #3, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #4, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #5, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #6, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #10, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #11, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #12, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #13, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #14, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #15, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #17, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #18, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #19, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #20, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #21, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Sat Nov 4 13:13:32 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated6-Nov-32023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
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Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Sat Nov 4 10:04:57 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated5-Nov-32023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Fri Nov 3 19:42:44 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated3-Nov-32023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened Cage-top-Model2.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #3, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #4, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #5, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #6, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #10, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #11, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #12, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #13, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #14, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #15, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #17, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #18, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #19, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #20, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #21, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.1, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.2, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.3, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.4, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.5, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.6, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.7, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.8, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.9, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.10, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.11, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.12, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.13, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.14, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.15, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.16, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.17, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Fri Nov 3 16:43:20 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated2-Nov2023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
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Opened HP_C-ring_monomer.mrc copy gaussian as #177.18, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.19, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.20, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.21, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.22, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.23, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.24, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.25, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.26, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.27, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.28, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.29, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.30, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.31, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.32, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.33, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.34, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.35, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.36, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.37, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.38, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.39, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177.40, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #259.1, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.2, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.3, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.4, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.5, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.6, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.7, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.8, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.9, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.10, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.11, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.12, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.13, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.14, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.15, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.16, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.17, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.18, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.19, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.20, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259.21, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Log from Thu Nov 2 12:56:02 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Must-use-this-for-RIP-
> models.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #178, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #179, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #180, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #181, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #182, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #183, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #184, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #185, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #186, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #187, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #188, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #189, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #190, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #191, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #192, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #193, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #194, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #195, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #196, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #197, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #198, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #199, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #200, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #201, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #202, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #203, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #204, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #205, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #206, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #207, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #208, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #209, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #210, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #211, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #212, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #213, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #214, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #215, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #216, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #239, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #240, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #241, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #242, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #243, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #244, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #245, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #246, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #247, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #248, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #249, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #250, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #251, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #252, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #253, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #254, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #255, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #256, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #257, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #258, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened Cage-top-Model2.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #3, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #4, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #5, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #6, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #10, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #11, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #12, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #13, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #14, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #15, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #17, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #18, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #19, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #20, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #21, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Log from Thu Oct 19 23:00:43 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/Meeting/Using_meeting.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
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Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at level 0.0115, step 1, values float32
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at level 0.00316, step 1, values float32
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0072, step 1, values float32
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at level 0.0072, step 1, values float32
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at level 0.00108, step 1, values float32
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at level 0.000387, step 1, values float32
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at level 0.00109, step 1, values float32
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Opened Cage-top-Model2.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #3, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #4, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #5, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #6, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #10, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #11, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #12, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #13, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #14, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #15, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #17, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #18, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #19, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened Cage-top-Model2.mrc copy as #20, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #21, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Log from Tue Sep 5 21:28:34 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> set bgColor #ffffff00
Log from Sun Sep 3 22:34:08 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/For-Poster-
> model_Sep_2023.cxs
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #178, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #179, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #180, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #181, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #182, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #183, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #184, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #185, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #186, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #187, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #188, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #189, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #190, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #191, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #192, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #193, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #194, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #195, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #196, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #197, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #198, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #199, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #200, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #201, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #202, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #203, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #204, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #205, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #206, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #207, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #208, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #209, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #210, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #211, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #212, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #213, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #214, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #215, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #216, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened FlgV_monomer.mrc gaussian as #239, grid size 160,160,160, pixel 4.2,
shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #240, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #241, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #242, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #243, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #244, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #245, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #246, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #247, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #248, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #249, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #250, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #251, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #252, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #253, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #254, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #255, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #256, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #257, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #258, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
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Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
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Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
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Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
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Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
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Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00707, step 1, values float32
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shown at level 0.00707, step 1, values float32
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Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
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Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
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at level 0.0153, step 1, values float32
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at level 0.00979, step 1, values float32
Log from Sun Sep 3 14:32:45 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/Cleaned-10-updated-
> Using_PilNO_maps.cxs
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level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
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Opened HP_C-ring_monomer.mrc copy gaussian as #178, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #179, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #180, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #182, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #183, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #184, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #185, grid size 160,160,160,
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Log from Fri Aug 18 13:15:10 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/08-updated-
> Using_PilNO_maps.cxs
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Opened FlgV_monomer.mrc copy as #226, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #231, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #232, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #233, grid size 160,160,160, pixel 4.2, shown
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Log from Tue Aug 15 12:36:41 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/06-updated-
> Using_PilNO_maps.cxs
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #277, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #278, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #280, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
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at level 0.00712, step 1, values float32
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at level 0.00712, step 1, values float32
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Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
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at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
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Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Log from Tue Aug 15 06:51:52 2023UCSF ChimeraX version: 1.4rc202206032339
(2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/06-updated-
> Using_PilNO_maps.cxs
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Opened HP_C-ring_monomer.mrc copy as #138, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
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Opened HP_C-ring_monomer.mrc copy as #147, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #152, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #160, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #175, grid size 160,160,160, pixel 4.2,
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Log from Mon Aug 14 20:25:29 2023UCSF ChimeraX version: 1.4rc202206032339
(2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/4-updated-
> Using_PilNO_maps.cxs
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4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #257, grid size 160,160,160, pixel
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Opened Single-MotA-truncated.mrc copy as #266, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #267, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Log from Mon Aug 14 13:50:25 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/updated-
> Using_PilNO_maps.cxs
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Log from Mon Aug 14 10:43:10 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/updated-
> Using_PilNO_maps.cxs
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4.2, shown at level 0.015, step 1, values float32
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4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #247, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #248, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #249, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #250, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
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4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #252, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
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4.2, shown at level 0.015, step 1, values float32
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4.2, shown at level 0.015, step 1, values float32
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4.2, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #271, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
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Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
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Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Log from Sun Aug 13 12:17:20 2023UCSF ChimeraX version: 1.4rc202206032339
(2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/updated-
> Using_PilNO_maps.cxs
Opened C-ring.mrc as #1, grid size 250,250,250, pixel 4.3, shown at level
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Opened Disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
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Opened Export2.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
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Opened Rod-rings.mrc as #15, grid size 250,250,250, pixel 4.3, shown at level
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Opened 9839-out.mrc as #20, grid size 240,240,240, pixel 4.3, shown at level
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Opened OM.mrc as #22, grid size 240,240,240, pixel 4.3, shown at level 0.0381,
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Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened Single-MotA-truncated.mrc as #29, grid size 110,110,140, pixel
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Opened Single-MotA-truncated.mrc as #28, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #30, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #31, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened Single-MotA-truncated.mrc as #37, grid size 110,110,140, pixel
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Opened Single-MotA-truncated.mrc as #39, grid size 110,110,140, pixel
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Opened Single-MotA-truncated.mrc as #40, grid size 110,110,140, pixel
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Opened Single-MotA-truncated.mrc as #41, grid size 110,110,140, pixel
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Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #48, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #49, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #50, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #51, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
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Opened Single-MotA-truncated.mrc as #53, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
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Opened Cage-out-short-bottom.mrc as #67, grid size 250,250,250, pixel 4.3,
shown at level 0.013, step 1, values float32
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Opened MotB-Periplasm.mrc as #80, grid size 250,250,250, pixel 4.3, shown at
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level 0.0115, step 1, values float32
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level 0.0208, step 1, values float32
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Opened FmpA-bin2.mrc as #87, grid size 240,240,100, pixel 4.3,4.3,4.3, shown
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Opened Stator-old-maps.mrc as #91, grid size 120,120,120, pixel 8.8, shown at
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Opened HP-WT-8.8A-rev.mrc as #92, grid size 120,120,120, pixel 8.8, shown at
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Opened Hp-L0.15-rev.mrc as #93, grid size 250,250,250, pixel 4.3, shown at
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Opened Part-of-PflA-B.mrc as #98, grid size 250,250,250, pixel 4.3, shown at
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Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
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Opened Hpwt-L0.08-Global-MS.mrc as #114, grid size 240,240,240, pixel 4.3,
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Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
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Opened Hpwt-L0.08-Global-MS-top.mrc as #118, grid size 240,240,240, pixel 4.3,
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Opened Hpwt-L0.08-Global-MS-bottom.mrc as #119, grid size 240,240,240, pixel
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Opened HP_C-ring.mrc as #134, grid size 160,160,160, pixel 4.2, shown at level
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Opened Hp_FlgV.mrc as #135, grid size 160,160,160, pixel 4.2, shown at level
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Opened HP_C-ring_monomer.mrc as #136, grid size 160,160,160, pixel 4.2, shown
at level 0.012, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #138, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #137, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #139, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #140, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #141, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #142, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #143, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #144, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #145, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #147, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #148, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #149, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #150, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #152, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #153, grid size 160,160,160, pixel 4.2,
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shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #160, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
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Opened HP_C-ring_monomer.mrc copy as #163, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #164, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #168, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #170, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #171, grid size 160,160,160, pixel 4.2,
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
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Opened PflB13c-clean.mrc as #423, grid size 180,180,180, pixel 4.3, shown at
level 0.0085, step 1, values float32
Log from Fri Aug 11 09:41:19 2023UCSF ChimeraX version: 1.4rc202206032339
(2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure13.cxs
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Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
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Opened HP_C-ring_monomer.mrc as #136, grid size 160,160,160, pixel 4.2, shown
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Opened HP_C-ring_monomer.mrc copy as #138, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #137, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #139, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #140, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #141, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #142, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #338, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #339, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #340, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #342, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #343, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #344, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #345, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #346, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
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4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #352, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #353, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #354, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Two-cage-polished.mrc as #355, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00833, step 1, values float32
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Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-top-withPflA.mrc as #393, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #396, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #397, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #398, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #399, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #400, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #401, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #402, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
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Opened Cage-top-withPflA.mrc copy as #410, grid size 160,160,200, pixel
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Opened PilM-region.mrc as #376, grid size 160,160,200, pixel 4.3,4.3,4.3,
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
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4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Log from Thu Mar 2 18:00:33 2023UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure12.cxs
Opened C-ring.mrc as #1, grid size 250,250,250, pixel 4.3, shown at level
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Opened Export2.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
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Opened Export4.mrc as #9, grid size 250,250,250, pixel 4.3, shown at level
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Opened PlfB.mrc as #14, grid size 250,250,250, pixel 4.3, shown at level
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Opened 9839-out.mrc as #20, grid size 240,240,240, pixel 4.3, shown at level
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Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened Single-MotA-truncated.mrc as #29, grid size 110,110,140, pixel
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Opened Single-MotA-truncated.mrc as #28, grid size 110,110,140, pixel
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Opened Single-MotA-truncated.mrc as #30, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #31, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #37, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #38, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #39, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #40, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #41, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #48, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #49, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #50, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #51, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #52, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #53, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #60, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #61, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #62, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 0838-disk.mrc as #10, grid size 240,240,240, pixel 4.3, shown at level
0.0152, step 1, values float32
Opened Cage-out-other.mrc as #12, grid size 250,250,250, pixel 4.3, shown at
level 0.0299, step 1, values float32
Opened OM.mrc copy as #27, grid size 240,240,240, pixel 4.3, shown at level
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Opened Export.mrc gaussian as #23, grid size 250,250,250, pixel 4.3, shown at
level 0.0227, step 1, values float32
Opened Cage-out-long-bottom.mrc as #4, grid size 250,250,250, pixel 4.3, shown
at level 0.0137, step 1, values float32
Opened Cage-out-long-middle.mrc as #65, grid size 250,250,250, pixel 4.3,
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Opened Cage-out-long-top.mrc as #66, grid size 250,250,250, pixel 4.3, shown
at level 0.0156, step 1, values float32
Opened Cage-out-other.mrc as #64, grid size 250,250,250, pixel 4.3, shown at
level 0.0137, step 1, values float32
Opened Cage-out-short-bottom.mrc as #67, grid size 250,250,250, pixel 4.3,
shown at level 0.013, step 1, values float32
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shown at level 0.0134, step 1, values float32
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Opened Hpwt-L0.08-Global-MS-bottom.mrc as #119, grid size 240,240,240, pixel
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Opened HP_C-ring_monomer.mrc copy as #140, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #141, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #142, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #143, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #144, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #145, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #147, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #148, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #149, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #150, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #151, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #152, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #153, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #154, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #155, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #156, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #157, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #158, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #159, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #160, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #162, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #164, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #165, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #166, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #167, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #170, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #171, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #172, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #173, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #174, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #175, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #176, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy gaussian as #177, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #180, grid size 160,160,160,
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Cage.mrc as #310, grid size 250,250,250, pixel 4.3, shown at level
0.0157, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
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Opened PilM-old-map.mrc gaussian as #315, grid size 120,120,120, pixel 8.8,
shown at level 0.0299, step 1, values float32
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Opened PlfB.mrc as #311, grid size 250,250,250, pixel 4.3, shown at level
0.0158, step 1, values float32
Opened Part-of-PflA-B.mrc as #314, grid size 250,250,250, pixel 4.3, shown at
level 0.0147, step 1, values float32
Opened Two-cage.mrc as #299, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.01, step 1, values float32
Opened Test_two-cage.mrc as #317, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Test_two-cage.mrc copy as #318, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
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4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #320, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #321, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #322, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #323, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #324, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #325, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #326, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #327, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #328, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #329, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #330, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #331, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #332, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #333, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #334, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #335, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc gaussian as #336, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #337, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #338, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #339, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #340, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #341, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #342, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #343, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #344, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #345, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #346, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #347, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #348, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #349, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #350, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #351, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #352, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #353, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #354, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Two-cage-polished.mrc as #355, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00833, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-top-withPflA.mrc as #393, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #394, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #395, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #396, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #397, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #398, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #399, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #400, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #401, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #402, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #403, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #404, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #405, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #406, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #407, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #408, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #409, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #410, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened PilM-region.mrc as #376, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00704, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Log from Thu Mar 2 10:55:15 2023UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure10.cxs
Opened C-ring.mrc as #1, grid size 250,250,250, pixel 4.3, shown at level
0.014, step 1, values float32
Opened Disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
0.0214, step 1, values float32
Opened Export2.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
0.0135, step 1, values float32
Opened Export3.mrc as #8, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened Export4.mrc as #9, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened PlfB.mrc as #14, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened Rod-rings.mrc as #15, grid size 250,250,250, pixel 4.3, shown at level
0.0156, step 1, values float32
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
level 0.0144, step 1, values float32
Opened 0838-top.mrc as #19, grid size 240,240,240, pixel 4.3, shown at level
0.0142, step 1, values float32
Opened 9839-out.mrc as #20, grid size 240,240,240, pixel 4.3, shown at level
0.0143, step 1, values float32
Opened OM.mrc as #22, grid size 240,240,240, pixel 4.3, shown at level 0.0381,
step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #29, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00658, step 1, values float32
Opened Single-MotA-truncated.mrc as #28, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #30, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #31, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #37, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #38, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #39, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #40, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #41, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened FlgV_monomer.mrc copy gaussian as #257, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #258, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened FlgV_monomer.mrc copy gaussian as #259, grid size 160,160,160, pixel
4.2, shown at level 0.015, step 1, values float32
Opened Hp_FliFc.mrc as #261, grid size 160,160,160, pixel 4.2, shown at level
0.0165, step 1, values float32
Opened Hp-FlgVr-4.2A.mrc as #262, grid size 160,160,160, pixel 4.2, shown at
level 0.0773, step 1, values float32
Opened Hp_FliFc.mrc gaussian as #263, grid size 160,160,160, pixel 4.2, shown
at level 0.02, step 1, values float32
Opened PilM-old-map.mrc gaussian as #260, grid size 120,120,120, pixel 8.8,
shown at level 0.0214, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #264, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #265, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #266, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #267, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #268, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #269, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #270, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #271, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #272, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #273, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #274, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #275, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #276, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #277, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #278, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #279, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #280, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #281, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #287, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #288, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #289, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #290, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #291, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #292, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #293, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #294, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #295, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #296, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #297, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #298, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Cage.mrc as #310, grid size 250,250,250, pixel 4.3, shown at level
0.0157, step 1, values float32
Opened Disk.mrc gaussian as #312, grid size 250,250,250, pixel 4.3, shown at
level 0.0186, step 1, values float32
Opened IM-old-maps.mrc gaussian as #313, grid size 120,120,120, pixel 8.8,
shown at level 0.0691, step 1, values float32
Opened PilM-old-map.mrc gaussian as #315, grid size 120,120,120, pixel 8.8,
shown at level 0.0299, step 1, values float32
Opened OM.mrc copy gaussian as #316, grid size 240,240,240, pixel 4.3, shown
at level 0.0364, step 1, values float32
Opened PlfB.mrc as #311, grid size 250,250,250, pixel 4.3, shown at level
0.0158, step 1, values float32
Opened Part-of-PflA-B.mrc as #314, grid size 250,250,250, pixel 4.3, shown at
level 0.0147, step 1, values float32
Opened Two-cage.mrc as #299, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.01, step 1, values float32
Opened Test_two-cage.mrc as #317, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #318, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #319, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #320, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #321, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #322, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #323, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #324, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #325, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #326, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #327, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #328, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #329, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #330, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #331, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #332, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #333, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #334, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc copy as #335, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc gaussian as #336, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #337, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #338, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #339, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #340, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #341, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #342, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #343, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #344, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #345, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #346, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #347, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #348, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #349, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #350, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #351, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #352, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #353, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #354, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Two-cage-polished.mrc as #355, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00833, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-top-withPflA.mrc as #393, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #394, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #395, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #396, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #397, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #398, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #399, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #400, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #401, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #402, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #403, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #404, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #405, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #406, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #407, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #408, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #409, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #410, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened PilM-region.mrc as #376, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00704, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Log from Fri Feb 17 13:21:43 2023UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure7.cxs
Opened C-ring.mrc as #1, grid size 250,250,250, pixel 4.3, shown at level
0.014, step 1, values float32
Opened Disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
0.0214, step 1, values float32
Opened Export2.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
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Opened Cage-top-withPflA.mrc copy as #410, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened PilM-region.mrc as #376, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00704, step 1, values float32
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Log from Thu Feb 16 19:17:05 2023UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure6.cxs
Opened C-ring.mrc as #1, grid size 250,250,250, pixel 4.3, shown at level
0.014, step 1, values float32
Opened Disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
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Opened Export2.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
0.0135, step 1, values float32
Opened Export3.mrc as #8, grid size 250,250,250, pixel 4.3, shown at level
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Opened Export4.mrc as #9, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened PlfB.mrc as #14, grid size 250,250,250, pixel 4.3, shown at level
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Opened Rod-rings.mrc as #15, grid size 250,250,250, pixel 4.3, shown at level
0.0156, step 1, values float32
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Opened 0838-top.mrc as #19, grid size 240,240,240, pixel 4.3, shown at level
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Opened 9839-out.mrc as #20, grid size 240,240,240, pixel 4.3, shown at level
0.0143, step 1, values float32
Opened OM.mrc as #22, grid size 240,240,240, pixel 4.3, shown at level 0.0381,
step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #29, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00658, step 1, values float32
Opened Single-MotA-truncated.mrc as #28, grid size 110,110,140, pixel
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Opened Single-MotA-truncated.mrc as #30, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #31, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #37, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #38, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #39, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #40, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #41, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #48, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #49, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #50, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #51, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #52, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #53, grid size 110,110,140, pixel
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Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
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level 0.0066, step 1, values float32
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Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #60, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #61, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #62, grid size 110,110,140, pixel
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Opened 0838-disk.mrc as #10, grid size 240,240,240, pixel 4.3, shown at level
0.0152, step 1, values float32
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level 0.0299, step 1, values float32
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level 0.0227, step 1, values float32
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at level 0.0137, step 1, values float32
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Opened Cage-out-long-top.mrc as #66, grid size 250,250,250, pixel 4.3, shown
at level 0.0156, step 1, values float32
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level 0.0137, step 1, values float32
Opened Cage-out-short-bottom.mrc as #67, grid size 250,250,250, pixel 4.3,
shown at level 0.013, step 1, values float32
Opened Cage-out-short-middle.mrc as #71, grid size 250,250,250, pixel 4.3,
shown at level 0.0134, step 1, values float32
Opened MotB-Periplasm.mrc as #80, grid size 250,250,250, pixel 4.3, shown at
level 0.0131, step 1, values float32
Opened PflA-complete.mrc as #84, grid size 250,250,250, pixel 4.3, shown at
level 0.0115, step 1, values float32
Opened IM-old-maps.mrc as #81, grid size 120,120,120, pixel 8.8, shown at
level 0.0843, step 1, values float32
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level 0.0208, step 1, values float32
Opened C-ring-old-map.mrc as #86, grid size 120,120,120, pixel 8.8, shown at
level 0.026, step 1, values float32
Opened FmpA-bin2.mrc as #87, grid size 240,240,100, pixel 4.3,4.3,4.3, shown
at level 0.0322, step 1, values float32
Opened Stator-old-maps.mrc as #91, grid size 120,120,120, pixel 8.8, shown at
level 0.0193, step 1, values float32
Opened HP-WT-8.8A-rev.mrc as #92, grid size 120,120,120, pixel 8.8, shown at
level 0.0897, step 1, values float32
Opened Hp-L0.15-rev.mrc as #93, grid size 250,250,250, pixel 4.3, shown at
level 0.0224, step 1, values float32
Opened PlfB.mrc as #97, grid size 250,250,250, pixel 4.3, shown at level
0.015, step 1, values float32
Opened Part-of-PflA-B.mrc as #98, grid size 250,250,250, pixel 4.3, shown at
level 0.0155, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-MS.mrc as #114, grid size 240,240,240, pixel 4.3,
shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
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Opened Hpwt-L0.08-Global-disk.mrc as #116, grid size 240,240,240, pixel 4.3,
shown at level 0.0168, step 1, values float32
Opened Cage-top-new.mrc as #117, grid size 250,250,250, pixel 4.3, shown at
level 0.0136, step 1, values float32
Opened Hpwt-L0.08-Global-MS-top.mrc as #118, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-Global-MS-bottom.mrc as #119, grid size 240,240,240, pixel
4.3, shown at level 0.0149, step 1, values float32
Opened HP_C-ring.mrc as #134, grid size 160,160,160, pixel 4.2, shown at level
0.0202, step 1, values float32
Opened Hp_FlgV.mrc as #135, grid size 160,160,160, pixel 4.2, shown at level
0.0135, step 1, values float32
Opened HP_C-ring_monomer.mrc as #136, grid size 160,160,160, pixel 4.2, shown
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Opened HP_C-ring_monomer.mrc copy as #138, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #137, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #139, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #140, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #141, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #142, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #143, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #144, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #145, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #146, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #147, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #148, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #149, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #150, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #151, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #152, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #153, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #154, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
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Opened HP_C-ring_monomer.mrc copy as #159, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #160, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #161, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #162, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #163, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #164, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #165, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #168, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #169, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #170, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #171, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #172, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #173, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #174, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #175, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #176, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #177, grid size 160,160,160,
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pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #185, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #186, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #187, grid size 160,160,160,
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pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #190, grid size 160,160,160,
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Opened HP_C-ring_monomer.mrc copy gaussian as #191, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #192, grid size 160,160,160,
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pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #194, grid size 160,160,160,
pixel 4.2, shown at level 0.04, step 1, values float32
Opened HP_C-ring_monomer.mrc copy gaussian as #195, grid size 160,160,160,
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Opened FlgV_monomer.mrc copy as #218, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #219, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #220, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #222, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #224, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #225, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #226, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #227, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #228, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #229, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #230, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #231, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #232, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #233, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #234, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #235, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #236, grid size 160,160,160, pixel 4.2, shown
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Opened FlgV_monomer.mrc copy as #237, grid size 160,160,160, pixel 4.2, shown
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #270, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
Opened Single-MotA-truncated.mrc copy as #271, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00853, step 1, values float32
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Opened Single-MotA-truncated.mrc copy gaussian as #282, grid size 110,110,140,
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Opened Single-MotA-truncated.mrc copy gaussian as #283, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #284, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #285, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
Opened Single-MotA-truncated.mrc copy gaussian as #286, grid size 110,110,140,
pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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pixel 4.3,4.3,4.3, shown at level 0.00654, step 1, values float32
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Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-top-withPflA.mrc as #393, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #394, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #395, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #396, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #397, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #398, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #399, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #400, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #401, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #402, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #403, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #404, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #405, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #406, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #407, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #408, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #409, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #410, grid size 160,160,200, pixel
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Opened PilM-region.mrc as #376, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.0038, step 1, values float32
Log from Thu Feb 16 17:50:40 2023UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure5.cxs
Opened C-ring.mrc as #1, grid size 250,250,250, pixel 4.3, shown at level
0.014, step 1, values float32
Opened Disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
0.0214, step 1, values float32
Opened Export2.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
0.0135, step 1, values float32
Opened Export3.mrc as #8, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened Export4.mrc as #9, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened PlfB.mrc as #14, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened Rod-rings.mrc as #15, grid size 250,250,250, pixel 4.3, shown at level
0.0156, step 1, values float32
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
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Opened 0838-top.mrc as #19, grid size 240,240,240, pixel 4.3, shown at level
0.0142, step 1, values float32
Opened 9839-out.mrc as #20, grid size 240,240,240, pixel 4.3, shown at level
0.0143, step 1, values float32
Opened OM.mrc as #22, grid size 240,240,240, pixel 4.3, shown at level 0.0381,
step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened Single-MotA-truncated.mrc as #29, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00658, step 1, values float32
Opened Single-MotA-truncated.mrc as #28, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #30, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #31, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #37, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #38, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #39, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #40, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #41, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #48, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #49, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #50, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #51, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #52, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #53, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
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level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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level 0.0066, step 1, values float32
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Opened 0838-disk.mrc as #10, grid size 240,240,240, pixel 4.3, shown at level
0.0152, step 1, values float32
Opened Cage-out-other.mrc as #12, grid size 250,250,250, pixel 4.3, shown at
level 0.0299, step 1, values float32
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Opened Export.mrc gaussian as #23, grid size 250,250,250, pixel 4.3, shown at
level 0.0227, step 1, values float32
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at level 0.0137, step 1, values float32
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Opened Cage-out-long-top.mrc as #66, grid size 250,250,250, pixel 4.3, shown
at level 0.0156, step 1, values float32
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level 0.0137, step 1, values float32
Opened Cage-out-short-bottom.mrc as #67, grid size 250,250,250, pixel 4.3,
shown at level 0.013, step 1, values float32
Opened Cage-out-short-middle.mrc as #71, grid size 250,250,250, pixel 4.3,
shown at level 0.0134, step 1, values float32
Opened MotB-Periplasm.mrc as #80, grid size 250,250,250, pixel 4.3, shown at
level 0.0131, step 1, values float32
Opened PflA-complete.mrc as #84, grid size 250,250,250, pixel 4.3, shown at
level 0.0115, step 1, values float32
Opened IM-old-maps.mrc as #81, grid size 120,120,120, pixel 8.8, shown at
level 0.0843, step 1, values float32
Opened PilM-old-map.mrc as #82, grid size 120,120,120, pixel 8.8, shown at
level 0.0208, step 1, values float32
Opened C-ring-old-map.mrc as #86, grid size 120,120,120, pixel 8.8, shown at
level 0.026, step 1, values float32
Opened FmpA-bin2.mrc as #87, grid size 240,240,100, pixel 4.3,4.3,4.3, shown
at level 0.0322, step 1, values float32
Opened Stator-old-maps.mrc as #91, grid size 120,120,120, pixel 8.8, shown at
level 0.0193, step 1, values float32
Opened HP-WT-8.8A-rev.mrc as #92, grid size 120,120,120, pixel 8.8, shown at
level 0.0897, step 1, values float32
Opened Hp-L0.15-rev.mrc as #93, grid size 250,250,250, pixel 4.3, shown at
level 0.0224, step 1, values float32
Opened PlfB.mrc as #97, grid size 250,250,250, pixel 4.3, shown at level
0.015, step 1, values float32
Opened Part-of-PflA-B.mrc as #98, grid size 250,250,250, pixel 4.3, shown at
level 0.0155, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-MS.mrc as #114, grid size 240,240,240, pixel 4.3,
shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-Global-disk.mrc as #116, grid size 240,240,240, pixel 4.3,
shown at level 0.0168, step 1, values float32
Opened Cage-top-new.mrc as #117, grid size 250,250,250, pixel 4.3, shown at
level 0.0136, step 1, values float32
Opened Hpwt-L0.08-Global-MS-top.mrc as #118, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-Global-MS-bottom.mrc as #119, grid size 240,240,240, pixel
4.3, shown at level 0.0149, step 1, values float32
Opened HP_C-ring.mrc as #134, grid size 160,160,160, pixel 4.2, shown at level
0.0202, step 1, values float32
Opened Hp_FlgV.mrc as #135, grid size 160,160,160, pixel 4.2, shown at level
0.0135, step 1, values float32
Opened HP_C-ring_monomer.mrc as #136, grid size 160,160,160, pixel 4.2, shown
at level 0.012, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #138, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #137, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #139, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #140, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #141, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #142, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #143, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #144, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #145, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #146, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #147, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #148, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #149, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #150, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #151, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #152, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #153, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #154, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #155, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #156, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #157, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #158, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #159, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #160, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #161, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #162, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #163, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #164, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #165, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #166, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #167, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #168, grid size 160,160,160, pixel 4.2,
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Opened HP_C-ring_monomer.mrc copy as #169, grid size 160,160,160, pixel 4.2,
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Opened Test_two-cage.mrc copy gaussian as #341, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #342, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #343, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #344, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #345, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #346, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #347, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #348, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #349, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #350, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #351, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #352, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #353, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #354, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Two-cage-polished.mrc as #355, grid size 160,160,200, pixel
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Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
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Opened Cage-top-withPflA.mrc as #393, grid size 160,160,200, pixel
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Opened Cage-top-withPflA.mrc copy as #394, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #395, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #396, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #397, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #398, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #399, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #400, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #401, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #402, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #403, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #404, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #405, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #406, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #407, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #408, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #409, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #410, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Log from Thu Feb 16 10:05:11 2023UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure4.cxs
Opened C-ring.mrc as #1, grid size 250,250,250, pixel 4.3, shown at level
0.014, step 1, values float32
Opened Disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
0.0214, step 1, values float32
Opened Export2.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
0.0135, step 1, values float32
Opened Export3.mrc as #8, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened Export4.mrc as #9, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
Opened PlfB.mrc as #14, grid size 250,250,250, pixel 4.3, shown at level
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Opened Rod-rings.mrc as #15, grid size 250,250,250, pixel 4.3, shown at level
0.0156, step 1, values float32
Opened 0838-bottom.mrc as #16, grid size 240,240,240, pixel 4.3, shown at
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Opened 0838-top.mrc as #19, grid size 240,240,240, pixel 4.3, shown at level
0.0142, step 1, values float32
Opened 9839-out.mrc as #20, grid size 240,240,240, pixel 4.3, shown at level
0.0143, step 1, values float32
Opened OM.mrc as #22, grid size 240,240,240, pixel 4.3, shown at level 0.0381,
step 1, values float32
Opened 1xFliL.mrc as #26, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened Single-MotA-truncated.mrc as #29, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00658, step 1, values float32
Opened Single-MotA-truncated.mrc as #28, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #30, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #31, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #32, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #33, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #34, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #35, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #36, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #37, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #38, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #39, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #40, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #41, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #42, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #43, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #44, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
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Opened 1xFliL.mrc as #45, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #46, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #47, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #48, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #49, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #50, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #51, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #52, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #53, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 1xFliL.mrc as #54, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #55, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #56, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #57, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #58, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened 1xFliL.mrc as #59, grid size 110,110,140, pixel 4.3,4.3,4.3, shown at
level 0.0066, step 1, values float32
Opened Single-MotA-truncated.mrc as #60, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened Single-MotA-truncated.mrc as #61, grid size 110,110,140, pixel
4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
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4.3,4.3,4.3, shown at level 0.00653, step 1, values float32
Opened 0838-disk.mrc as #10, grid size 240,240,240, pixel 4.3, shown at level
0.0152, step 1, values float32
Opened Cage-out-other.mrc as #12, grid size 250,250,250, pixel 4.3, shown at
level 0.0299, step 1, values float32
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Opened Export.mrc gaussian as #23, grid size 250,250,250, pixel 4.3, shown at
level 0.0227, step 1, values float32
Opened Cage-out-long-bottom.mrc as #4, grid size 250,250,250, pixel 4.3, shown
at level 0.0137, step 1, values float32
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Opened Cage-out-long-top.mrc as #66, grid size 250,250,250, pixel 4.3, shown
at level 0.0156, step 1, values float32
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level 0.0137, step 1, values float32
Opened Cage-out-short-bottom.mrc as #67, grid size 250,250,250, pixel 4.3,
shown at level 0.013, step 1, values float32
Opened Cage-out-short-middle.mrc as #71, grid size 250,250,250, pixel 4.3,
shown at level 0.0134, step 1, values float32
Opened MotB-Periplasm.mrc as #80, grid size 250,250,250, pixel 4.3, shown at
level 0.0131, step 1, values float32
Opened PflA-complete.mrc as #84, grid size 250,250,250, pixel 4.3, shown at
level 0.0115, step 1, values float32
Opened IM-old-maps.mrc as #81, grid size 120,120,120, pixel 8.8, shown at
level 0.0843, step 1, values float32
Opened PilM-old-map.mrc as #82, grid size 120,120,120, pixel 8.8, shown at
level 0.0208, step 1, values float32
Opened C-ring-old-map.mrc as #86, grid size 120,120,120, pixel 8.8, shown at
level 0.026, step 1, values float32
Opened FmpA-bin2.mrc as #87, grid size 240,240,100, pixel 4.3,4.3,4.3, shown
at level 0.0322, step 1, values float32
Opened Stator-old-maps.mrc as #91, grid size 120,120,120, pixel 8.8, shown at
level 0.0193, step 1, values float32
Opened HP-WT-8.8A-rev.mrc as #92, grid size 120,120,120, pixel 8.8, shown at
level 0.0897, step 1, values float32
Opened Hp-L0.15-rev.mrc as #93, grid size 250,250,250, pixel 4.3, shown at
level 0.0224, step 1, values float32
Opened PlfB.mrc as #97, grid size 250,250,250, pixel 4.3, shown at level
0.015, step 1, values float32
Opened Part-of-PflA-B.mrc as #98, grid size 250,250,250, pixel 4.3, shown at
level 0.0155, step 1, values float32
Opened Hpwt-L0.08-Global-Rod-no-MS.mrc as #113, grid size 240,240,240, pixel
4.3, shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-MS.mrc as #114, grid size 240,240,240, pixel 4.3,
shown at level 0.0151, step 1, values float32
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-Global-disk.mrc as #116, grid size 240,240,240, pixel 4.3,
shown at level 0.0168, step 1, values float32
Opened Cage-top-new.mrc as #117, grid size 250,250,250, pixel 4.3, shown at
level 0.0136, step 1, values float32
Opened Hpwt-L0.08-Global-MS-top.mrc as #118, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
Opened Hpwt-L0.08-Global-MS-bottom.mrc as #119, grid size 240,240,240, pixel
4.3, shown at level 0.0149, step 1, values float32
Opened HP_C-ring.mrc as #134, grid size 160,160,160, pixel 4.2, shown at level
0.0202, step 1, values float32
Opened Hp_FlgV.mrc as #135, grid size 160,160,160, pixel 4.2, shown at level
0.0135, step 1, values float32
Opened HP_C-ring_monomer.mrc as #136, grid size 160,160,160, pixel 4.2, shown
at level 0.012, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #138, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #137, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #139, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #140, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #141, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #142, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #143, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #144, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #145, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #146, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #147, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #148, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #149, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #150, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #151, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #152, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #153, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #154, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #155, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #156, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #157, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #158, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #159, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #160, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #161, grid size 160,160,160, pixel 4.2,
shown at level 0.0158, step 1, values float32
Opened HP_C-ring_monomer.mrc copy as #162, grid size 160,160,160, pixel 4.2,
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Opened Test_two-cage.mrc copy as #335, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.03, step 1, values float32
Opened Test_two-cage.mrc gaussian as #336, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #337, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #338, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #339, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #340, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #341, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #342, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #343, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #344, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #345, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #346, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #347, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #348, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #349, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #350, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #351, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #352, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #353, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Test_two-cage.mrc copy gaussian as #354, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.015, step 1, values float32
Opened Two-cage-polished.mrc as #355, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00833, step 1, values float32
Opened Cage-bottom.mrc as #356, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #357, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #358, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #359, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #360, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #361, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #362, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #363, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #364, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #365, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #366, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #367, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #368, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #369, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #370, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #371, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #372, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-bottom.mrc copy as #373, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00933, step 1, values float32
Opened Cage-top-withPflA.mrc as #393, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #394, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #395, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #396, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #397, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #398, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #399, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #400, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #401, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #402, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #403, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #404, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #405, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #406, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #407, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #408, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #409, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Opened Cage-top-withPflA.mrc copy as #410, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at level 0.00959, step 1, values float32
Log from Tue Feb 14 13:49:39 2023
> show #!26 models
> color #26 #dbdbdb66 models
> color #32-36 #dbdbdb66 models
> color #42-47 #dbdbdb66 models
> color #54-59 #dbdbdb66 models
> save /Users/shoichi/Desktop/Hp-PilNO1.png supersample 2
> transparentBackground true
> color #8 #92929299 models
> color #10 #92929299 models
> color #16 #92929299 models
> color #19 #92929299 models
> color #26 #dbdbdb99 models
> color #32 #92929299 models
> color #33 #92929299 models
> color #34 #92929299 models
> color #35 #92929299 models
> color #36 #92929299 models
> color #42 #92929299 models
> color #43 #92929299 models
> color #44 #92929299 models
> color #46 #92929299 models
> color #47 #92929299 models
> color #54 #92929299 models
> color #55 #92929299 models
> color #56 #92929299 models
> color #58 #92929299 models
> color #57 #92929299 models
> color #59 #92929299 models
> color #113 #92929299 models
> color #114 #92929299 models
> color #115 #92929299 models
> color #177 #92929299 models
> color #177-216 #92929299 modelstrue
Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword
> save /Users/shoichi/Desktop/Hp_PilNO1.png supersample 2
> transparentBackground true
> color #177 #929292 models transparency 0
> color #177-216 #929292 models transparency 0
> save /Users/shoichi/Desktop/Hp_PilNO1.png supersample 2
> transparentBackground true
> color #178 #92929299 models
> color #179 #92929299 models
> color #181 #92929299 models
> color #180 #92929299 models
> color #189 #92929299 models
> color #177-216 #92929299 models
> color #177 #40639d models transparency 0
> color #177 #92929299 models
> color #177 #9292929b models
> color #177 #9292929a models
> color #177 #929292 models transparency 0
> color #177-216 #929292 models transparency 0
> save /Users/shoichi/Desktop/Hp_PilNO1.png supersample 2
> transparentBackground true
> color #177 #92929200 models
> color #177 #92929299 models
> color #177-216 #92929299 models
> save /Users/shoichi/Desktop/Hp_PilNO1.png supersample 2
> transparentBackground true
> color #177 #929292 models transparency 0
> color #177-216 #929292 models transparency 0
> color #177 #929292b3 models
> color #177-216 #929292b3 models
> save /Users/shoichi/Desktop/Hp_PilNO1.png supersample 2
> transparentBackground true
> color #177 #929292b3 models
> color #239-259 #929292b3 models
> color #312 #929292b3 models
> hide #!312 models
> show #!312 models
> color #312 #929292b3 models
> color #113-115 #929292b3 models
> hide #!113 models
> show #!113 models
> color #113 #929292b3 models
> color #54-59 #929292b3 models
> color #42-47 #929292b3 models
> color #32-36 #929292b3 models
> color #26 #929292b3 models
> color #19 #929292b3 models
> color #16 #929292b3 models
> color #10 #929292b3 models
> color #8 #929292b3 models
> ui tool show "Side View"
[Repeated 1 time(s)]
> save /Users/shoichi/Desktop/Hp_PilNO1.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-Karen/For-Figure/For-PilNO_figure3.cxs" includeMaps true
> select add #373
2 models selected
> select subtract #373
Nothing selected
> select add #372
2 models selected
> select subtract #372
Nothing selected
> select add #371
2 models selected
> color #371 #1a8ccb4c models
> color #371 #1a8ccb20 models
[Repeated 1 time(s)]
> color #371 #1a8ccb2d models
> color #371 #1a8ccb32 models
> show #!414 models
> color #371 #1a8ccb33 models
> hide #!414 models
> show #!413 models
> hide #!413 models
> select add #413
100530 atoms, 101592 bonds, 6048 residues, 21 models selected
> show #!413 models
> select subtract #371
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
Alignment identifier is 1
Alignment identifier is 2
> select #413.1/A:157 #413.2/A:157 #413.3/A:157 #413.4/A:157 #413.5/A:157
> #413.6/A:157 #413.7/A:157 #413.8/A:157 #413.9/A:157 #413.10/A:157
> #413.11/A:157 #413.12/A:157 #413.13/A:157 #413.14/A:157 #413.15/A:157
> #413.16/A:157 #413.17/A:157 #413.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #413.1/A:156-157 #413.2/A:156-157 #413.3/A:156-157 #413.4/A:156-157
> #413.5/A:156-157 #413.6/A:156-157 #413.7/A:156-157 #413.8/A:156-157
> #413.9/A:156-157 #413.10/A:156-157 #413.11/A:156-157 #413.12/A:156-157
> #413.13/A:156-157 #413.14/A:156-157 #413.15/A:156-157 #413.16/A:156-157
> #413.17/A:156-157 #413.18/A:156-157
756 atoms, 738 bonds, 36 residues, 18 models selected
1 [ID: 1] region 18 chains [156-157] RMSD: 562.657
> select #413.1/A:1-157 #413.2/A:1-157 #413.3/A:1-157 #413.4/A:1-157
> #413.5/A:1-157 #413.6/A:1-157 #413.7/A:1-157 #413.8/A:1-157 #413.9/A:1-157
> #413.10/A:1-157 #413.11/A:1-157 #413.12/A:1-157 #413.13/A:1-157
> #413.14/A:1-157 #413.15/A:1-157 #413.16/A:1-157 #413.17/A:1-157
> #413.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
> select #413.1/A:1-157 #413.2/A:1-157 #413.3/A:1-157 #413.4/A:1-157
> #413.5/A:1-157 #413.6/A:1-157 #413.7/A:1-157 #413.8/A:1-157 #413.9/A:1-157
> #413.10/A:1-157 #413.11/A:1-157 #413.12/A:1-157 #413.13/A:1-157
> #413.14/A:1-157 #413.15/A:1-157 #413.16/A:1-157 #413.17/A:1-157
> #413.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 560.765
> color (#!413.1-18 & sel) #1a8ccbff
> color (#!413.1-18 & sel) #5abfffff
> color (#!413.1-18 & sel) #1a8ccbff
> select add #413
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #413
36 models selected
> select #413.1/B:179 #413.2/B:179 #413.3/B:179 #413.4/B:179 #413.5/B:179
> #413.6/B:179 #413.7/B:179 #413.8/B:179 #413.9/B:179 #413.10/B:179
> #413.11/B:179 #413.12/B:179 #413.13/B:179 #413.14/B:179 #413.15/B:179
> #413.16/B:179 #413.17/B:179 #413.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #413.1/B:1-179 #413.2/B:1-179 #413.3/B:1-179 #413.4/B:1-179
> #413.5/B:1-179 #413.6/B:1-179 #413.7/B:1-179 #413.8/B:1-179 #413.9/B:1-179
> #413.10/B:1-179 #413.11/B:1-179 #413.12/B:1-179 #413.13/B:1-179
> #413.14/B:1-179 #413.15/B:1-179 #413.16/B:1-179 #413.17/B:1-179
> #413.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 540.562
> color (#!413.1-18 & sel) #27eaadff
> color (#!413.1-18 & sel) #53ddabff
> color (#!413.1-18 & sel) #27eaadff
[Repeated 1 time(s)]
> color (#!413.1-18 & sel) #2affbdff
> color (#!413.1-18 & sel) #24ffb3ff
> color (#!413.1-18 & sel) #23ffadff
> color (#!413.1-18 & sel) #24ffa8ff
> color (#!413.1-18 & sel) #2effa5ff
> color (#!413.1-18 & sel) #35ffa4ff
[Repeated 1 time(s)]
> color (#!413.1-18 & sel) #2eff9fff
[Repeated 1 time(s)]
> color (#!413.1-18 & sel) #25ca7eff
> color (#!413.1-18 & sel) #24c87cff
> color (#!413.1-18 & sel) #23c178ff
> color (#!413.1-18 & sel) #26d081ff
> color (#!413.1-18 & sel) #27d886ff
> color (#!413.1-18 & sel) #2aea92ff
> color (#!413.1-18 & sel) #2ae68fff
> select add #413
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #413
36 models selected
> show #!414 models
> select add #414
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #414.1/A:157 #414.2/A:157 #414.3/A:157 #414.4/A:157 #414.5/A:157
> #414.6/A:157 #414.7/A:157 #414.8/A:157 #414.9/A:157 #414.10/A:157
> #414.11/A:157 #414.12/A:157 #414.13/A:157 #414.14/A:157 #414.15/A:157
> #414.16/A:157 #414.17/A:157 #414.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #414.1/A:1-157 #414.2/A:1-157 #414.3/A:1-157 #414.4/A:1-157
> #414.5/A:1-157 #414.6/A:1-157 #414.7/A:1-157 #414.8/A:1-157 #414.9/A:1-157
> #414.10/A:1-157 #414.11/A:1-157 #414.12/A:1-157 #414.13/A:1-157
> #414.14/A:1-157 #414.15/A:1-157 #414.16/A:1-157 #414.17/A:1-157
> #414.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 574.649
> select add #414
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
> select #414.1/A:157 #414.2/A:157 #414.3/A:157 #414.4/A:157 #414.5/A:157
> #414.6/A:157 #414.7/A:157 #414.8/A:157 #414.9/A:157 #414.10/A:157
> #414.11/A:157 #414.12/A:157 #414.13/A:157 #414.14/A:157 #414.15/A:157
> #414.16/A:157 #414.17/A:157 #414.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #414.1/A:1-157 #414.2/A:1-157 #414.3/A:1-157 #414.4/A:1-157
> #414.5/A:1-157 #414.6/A:1-157 #414.7/A:1-157 #414.8/A:1-157 #414.9/A:1-157
> #414.10/A:1-157 #414.11/A:1-157 #414.12/A:1-157 #414.13/A:1-157
> #414.14/A:1-157 #414.15/A:1-157 #414.16/A:1-157 #414.17/A:1-157
> #414.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 574.649
> color (#!414.1-18 & sel) #1a8ccbff
> select #414.1/B:179 #414.2/B:179 #414.3/B:179 #414.4/B:179 #414.5/B:179
> #414.6/B:179 #414.7/B:179 #414.8/B:179 #414.9/B:179 #414.10/B:179
> #414.11/B:179 #414.12/B:179 #414.13/B:179 #414.14/B:179 #414.15/B:179
> #414.16/B:179 #414.17/B:179 #414.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #414.1/B:1-179 #414.2/B:1-179 #414.3/B:1-179 #414.4/B:1-179
> #414.5/B:1-179 #414.6/B:1-179 #414.7/B:1-179 #414.8/B:1-179 #414.9/B:1-179
> #414.10/B:1-179 #414.11/B:1-179 #414.12/B:1-179 #414.13/B:1-179
> #414.14/B:1-179 #414.15/B:1-179 #414.16/B:1-179 #414.17/B:1-179
> #414.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 560.009
> color (#!414.1-18 & sel) #2ae68fff
> turn x 90
[Repeated 3 time(s)]
> View name SIDE
Unknown command: View name SIDE
> view name SIDE
> view SIDE
> turn x 90
> view SIDE
> hide #!393 models
> hide #!393-410 models
> ui tool show "Side View"
> turn x 90
> hide #!414 models
> hide #!413 models
> select add #414
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #414
36 models selected
> show #411 models
> show #412 models
> hide #!313 models
> view orient
> select add #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #412,0.78981,0.41151,-0.45482,155.85,0.53153,-0.089199,0.84233,480.46,0.30605,-0.90703,-0.28918,478.95
> ui mousemode right "rotate selected models"
> view matrix models
> #412,0.78669,0.43501,-0.43804,154.79,0.57036,-0.24062,0.78536,486,0.23624,-0.86768,-0.4374,481.61
> ui mousemode right "translate selected models"
> view matrix models
> #412,0.78669,0.43501,-0.43804,156.38,0.57036,-0.24062,0.78536,478.3,0.23624,-0.86768,-0.4374,475.46
> ui mousemode right translate
> view orient
> select subtract #412
Nothing selected
> select add #373
2 models selected
> select subtract #373
Nothing selected
> select add #370
3 models selected
> select subtract #370
Nothing selected
> select add #371
3 models selected
> select subtract #371
Nothing selected
> ui tool show "Fit in Map"
> select add #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> select subtract #412
Nothing selected
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 76
shifted from previous position = 6.53
rotated from previous position = 9.91 degrees
atoms outside contour = 736, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.79664603 -0.42115003 0.43357546 408.54342382
-0.51504021 0.09752299 -0.85160013 384.26654147
0.31636786 -0.90173271 -0.29460051 364.29548275
Axis -0.31664687 0.74030554 -0.59302822
Axis point 295.23835505 0.00000000 325.63566576
Rotation angle (degrees) 175.45962129
Shift along axis -60.92685128
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 24
shifted from previous position = 0.0348
rotated from previous position = 0.306 degrees
atoms outside contour = 737, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.79980872 -0.41889521 0.42992179 408.52683508
-0.51110716 0.09968217 -0.85371709 384.25841814
0.31476247 -0.90254652 -0.29382702 364.26400179
Axis -0.31421859 0.74105300 -0.59338616
Axis point 294.36118758 0.00000000 325.74453317
Rotation angle (degrees) 175.54363863
Shift along axis -59.76009178
> select add #411
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> select add #412
11170 atoms, 11288 bonds, 672 residues, 2 models selected
> select subtract #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #411,0.67258,0.63351,-0.38249,150.61,0.60874,-0.17973,0.77274,539.13,0.4208,-0.75257,-0.50653,486.01
> view matrix models
> #411,0.67258,0.63351,-0.38249,156.05,0.60874,-0.17973,0.77274,541.03,0.4208,-0.75257,-0.50653,486.29
> ui mousemode right "rotate selected models"
> view matrix models
> #411,0.71774,0.4814,-0.50309,163.16,0.62259,-0.12015,0.77327,539.35,0.3118,-0.86823,-0.38595,486.66
> ui mousemode right "translate selected models"
> view matrix models
> #411,0.71774,0.4814,-0.50309,159.89,0.62259,-0.12015,0.77327,541.9,0.3118,-0.86823,-0.38595,487.28
> fitmap #411 inMap #371
Fit molecule PilN-PilO.pdb (#411) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1308, steps = 68
shifted from previous position = 4.33
rotated from previous position = 11.6 degrees
atoms outside contour = 713, contour level = 0.0093282
Position of PilN-PilO.pdb (#411) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.69483678 -0.63150854 0.34409128 401.28883804
-0.57744115 0.20470664 -0.79035239 325.15033250
0.42867651 -0.74785838 -0.50689672 371.61032078
Axis 0.38980928 -0.77592366 0.49597499
Axis point 276.55905729 0.00000000 296.17081394
Rotation angle (degrees) 176.87547885
Shift along axis 88.44370339
> fitmap #411 inMap #371
Fit molecule PilN-PilO.pdb (#411) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1308, steps = 44
shifted from previous position = 0.103
rotated from previous position = 1.02 degrees
atoms outside contour = 707, contour level = 0.0093282
Position of PilN-PilO.pdb (#411) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.68307903 -0.63830697 0.35491866 401.36075447
-0.59080931 0.19725121 -0.78232750 325.24713721
0.42935696 -0.74408075 -0.51185586 371.62430580
Axis 0.39745804 -0.77355868 0.49359302
Axis point 279.15674653 0.00000000 295.25882612
Rotation angle (degrees) 177.24219488
Shift along axis 91.35747684
> select subtract #411
Nothing selected
> view orient
> turn x 90
[Repeated 1 time(s)]
> select add #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view orient
> turn x 90
[Repeated 1 time(s)]
> view matrix models
> #412,0.71999,0.57883,-0.38284,144.94,0.58865,-0.2172,0.77867,484.27,0.36756,-0.78599,-0.49711,479.92
> ui mousemode right "translate selected models"
> view matrix models
> #412,0.71999,0.57883,-0.38284,149.22,0.58865,-0.2172,0.77867,485.33,0.36756,-0.78599,-0.49711,480.58
> view matrix models
> #412,0.71999,0.57883,-0.38284,151.25,0.58865,-0.2172,0.77867,485.94,0.36756,-0.78599,-0.49711,480.91
> view matrix models
> #412,0.71999,0.57883,-0.38284,154.44,0.58865,-0.2172,0.77867,485.35,0.36756,-0.78599,-0.49711,481.35
> view matrix models
> #412,0.71999,0.57883,-0.38284,157.54,0.58865,-0.2172,0.77867,484.17,0.36756,-0.78599,-0.49711,481.66
> view matrix models
> #412,0.71999,0.57883,-0.38284,161.68,0.58865,-0.2172,0.77867,482.68,0.36756,-0.78599,-0.49711,482.05
> view matrix models
> #412,0.71999,0.57883,-0.38284,169.93,0.58865,-0.2172,0.77867,482.01,0.36756,-0.78599,-0.49711,483
> view matrix models
> #412,0.71999,0.57883,-0.38284,170.1,0.58865,-0.2172,0.77867,475.98,0.36756,-0.78599,-0.49711,479.31
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 92
shifted from previous position = 21
rotated from previous position = 14.1 degrees
atoms outside contour = 745, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.77845121 -0.43214016 0.45526752 408.59799319
-0.53770317 0.08486476 -0.83885232 384.30780507
0.32386562 -0.89780444 -0.29842622 364.47788347
Axis -0.33014428 0.73587827 -0.59117504
Axis point 300.37039009 0.00000000 324.86723653
Rotation angle (degrees) 174.87767681
Shift along axis -67.56275598
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 40
shifted from previous position = 0.0802
rotated from previous position = 0.277 degrees
atoms outside contour = 742, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.78134487 -0.43049066 0.45186050 408.59460614
-0.53440071 0.08752281 -0.84068756 384.35896893
0.32236006 -0.89834153 -0.29844003 364.42844602
Axis -0.32802634 0.73680192 -0.59120356
Axis point 299.57301487 0.00000000 324.85987089
Rotation angle (degrees) 174.95833778
Shift along axis -66.28476265
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 40
shifted from previous position = 0.112
rotated from previous position = 0.51 degrees
atoms outside contour = 740, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.78669593 -0.42721543 0.44564156 408.56434934
-0.52748208 0.09012396 -0.84477231 384.25656210
0.32073680 -0.89964693 -0.29624865 364.40981189
Axis -0.32410765 0.73772890 -0.59220799
Axis point 298.06109009 0.00000000 325.29613804
Rotation angle (degrees) 175.14381814
Shift along axis -64.74806394
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 36
shifted from previous position = 0.0281
rotated from previous position = 0.236 degrees
atoms outside contour = 742, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.78913455 -0.42585097 0.44262572 408.55775146
-0.52440067 0.09191416 -0.84649611 384.23922927
0.31979763 -0.90011260 -0.29584919 364.38703938
Axis -0.32230442 0.73835560 -0.59241106
Axis point 297.35526839 0.00000000 325.39284487
Rotation angle (degrees) 175.22880903
Shift along axis -63.84169734
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 40
shifted from previous position = 0.0291
rotated from previous position = 0.198 degrees
atoms outside contour = 741, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.79118281 -0.42461567 0.44014908 408.54388736
-0.52187143 0.09349631 -0.84788477 384.22701574
0.31887285 -0.90053314 -0.29556747 364.36321440
Axis -0.32077354 0.73890622 -0.59255543
Axis point 296.76694612 0.00000000 325.44417844
Rotation angle (degrees) 175.29274542
Shift along axis -63.04773510
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 40
shifted from previous position = 0.068
rotated from previous position = 0.246 degrees
atoms outside contour = 736, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.79374590 -0.42291505 0.43716155 408.55195233
-0.51878553 0.09550894 -0.84955256 384.27703602
0.31753574 -0.90112200 -0.29521205 364.32739418
Axis -0.31883511 0.73960296 -0.59273234
Axis point 296.07435140 0.00000000 325.50194830
Rotation angle (degrees) 175.36133042
Shift along axis -61.99690259
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 28
shifted from previous position = 0.103
rotated from previous position = 0.343 degrees
atoms outside contour = 741, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.79726316 -0.42060811 0.43296674 408.52242570
-0.51407048 0.09715213 -0.85222822 384.18120542
0.31639047 -0.90202563 -0.29367804 364.31861003
Axis -0.31618184 0.74018510 -0.59342654
Axis point 295.05649911 0.00000000 325.79480043
Rotation angle (degrees) 175.48339282
Shift along axis -60.99849879
> fitmap #412 inMap #371
Fit molecule PilN-PilO.pdb (#412) to map Cage-bottom.mrc copy (#371) using
5585 atoms
average map value = 0.1113, steps = 40
shifted from previous position = 0.0796
rotated from previous position = 0.228 degrees
atoms outside contour = 740, contour level = 0.0093282
Position of PilN-PilO.pdb (#412) relative to Cage-bottom.mrc copy (#371)
coordinates:
Matrix rotation and translation
-0.79954792 -0.41924698 0.43006397 408.53172722
-0.51123107 0.09925206 -0.85369301 384.23968328
0.31522349 -0.90243058 -0.29368887 364.27701923
Axis -0.31443751 0.74091003 -0.59344871
Axis point 294.40878952 0.00000000 325.81569419
Rotation angle (degrees) 175.55514205
Shift along axis -59.95038968
> ui mousemode right "rotate selected models"
> view matrix models
> #412,0.78386,0.4552,-0.42232,149.24,0.55125,-0.19708,0.81073,483,0.28582,-0.8683,-0.40541,480.06
> ui mousemode right "translate selected models"
> view matrix models
> #412,0.78386,0.4552,-0.42232,153.94,0.55125,-0.19708,0.81073,485.15,0.28582,-0.8683,-0.40541,480.95
> view matrix models
> #412,0.78386,0.4552,-0.42232,157.33,0.55125,-0.19708,0.81073,485.6,0.28582,-0.8683,-0.40541,481.45
> view matrix models
> #412,0.78386,0.4552,-0.42232,159.39,0.55125,-0.19708,0.81073,484.4,0.28582,-0.8683,-0.40541,481.67
> view matrix models
> #412,0.78386,0.4552,-0.42232,159.88,0.55125,-0.19708,0.81073,479.09,0.28582,-0.8683,-0.40541,478.18
> select subtract #412
Nothing selected
> select add #411
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #411,0.73929,0.46894,-0.48326,163.76,0.61308,-0.17189,0.7711,538.24,0.27853,-0.86635,-0.41457,486.71
> view matrix models
> #411,0.74202,0.46024,-0.48742,164.1,0.61376,-0.17397,0.77009,538.32,0.26963,-0.87059,-0.41156,486.76
> ui mousemode right "translate selected models"
> view matrix models
> #411,0.74202,0.46024,-0.48742,165.98,0.61376,-0.17397,0.77009,539.6,0.26963,-0.87059,-0.41156,486.88
> view matrix models
> #411,0.74202,0.46024,-0.48742,156.41,0.61376,-0.17397,0.77009,542.69,0.26963,-0.87059,-0.41156,486.57
> show #!69 models
> select subtract #411
Nothing selected
> hide #!69 models
> view orient
> turn x 90
[Repeated 1 time(s)]
> ui mousemode right translate
> ui mousemode right select
> ui mousemode right zoom
> select add #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> select add #411
11170 atoms, 11288 bonds, 672 residues, 2 models selected
> select subtract #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #411,0.74202,0.46024,-0.48742,156.4,0.61376,-0.17397,0.77009,542.06,0.26963,-0.87059,-0.41156,486.5
> ui mousemode right "rotate selected models"
> view matrix models
> #411,0.67894,0.48339,-0.55261,157.45,0.67634,-0.11892,0.72693,541.52,0.28567,-0.86729,-0.40768,486.29
> undo
> hide #!316 models
> hide #!312 models
> turn x 90
[Repeated 2 time(s)]
> ui mousemode right zoom
> select subtract #411
Nothing selected
> view orient
> turn x 90
[Repeated 1 time(s)]
> sym #411 C18 copies true center #8
> sym #412 C18 copies true center #8
> hide #!356 models
> hide #!356-373 models
> show #!356-373 models
> hide #!356-373 models
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> select subtract #374
Nothing selected
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
Alignment identifier is 1
Alignment identifier is 2
> select #374.1/A:157 #374.2/A:157 #374.3/A:157 #374.4/A:157 #374.5/A:157
> #374.6/A:157 #374.7/A:157 #374.8/A:157 #374.9/A:157 #374.10/A:157
> #374.11/A:157 #374.12/A:157 #374.13/A:157 #374.14/A:157 #374.15/A:157
> #374.16/A:157 #374.17/A:157 #374.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #374.1/A:1-157 #374.2/A:1-157 #374.3/A:1-157 #374.4/A:1-157
> #374.5/A:1-157 #374.6/A:1-157 #374.7/A:1-157 #374.8/A:1-157 #374.9/A:1-157
> #374.10/A:1-157 #374.11/A:1-157 #374.12/A:1-157 #374.13/A:1-157
> #374.14/A:1-157 #374.15/A:1-157 #374.16/A:1-157 #374.17/A:1-157
> #374.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 560.558
> color (#!374.1-18 & sel) #2ae68fff
> color (#!374.1-18 & sel) #1a8ccbff
> select #374.1/B:1-2 #374.2/B:1-2 #374.3/B:1-2 #374.4/B:1-2 #374.5/B:1-2
> #374.6/B:1-2 #374.7/B:1-2 #374.8/B:1-2 #374.9/B:1-2 #374.10/B:1-2
> #374.11/B:1-2 #374.12/B:1-2 #374.13/B:1-2 #374.14/B:1-2 #374.15/B:1-2
> #374.16/B:1-2 #374.17/B:1-2 #374.18/B:1-2
738 atoms, 720 bonds, 36 residues, 18 models selected
> select #374.1/B:1-179 #374.2/B:1-179 #374.3/B:1-179 #374.4/B:1-179
> #374.5/B:1-179 #374.6/B:1-179 #374.7/B:1-179 #374.8/B:1-179 #374.9/B:1-179
> #374.10/B:1-179 #374.11/B:1-179 #374.12/B:1-179 #374.13/B:1-179
> #374.14/B:1-179 #374.15/B:1-179 #374.16/B:1-179 #374.17/B:1-179
> #374.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.853
> color (#!374.1-18 & sel) #2ae68fff
> color (#!374.1-18 & sel) #2affbdff
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #374
36 models selected
> show #!393 models
> select #374.1/B:179 #374.2/B:179 #374.3/B:179 #374.4/B:179 #374.5/B:179
> #374.6/B:179 #374.7/B:179 #374.8/B:179 #374.9/B:179 #374.10/B:179
> #374.11/B:179 #374.12/B:179 #374.13/B:179 #374.14/B:179 #374.15/B:179
> #374.16/B:179 #374.17/B:179 #374.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #374.1/B:1-179 #374.2/B:1-179 #374.3/B:1-179 #374.4/B:1-179
> #374.5/B:1-179 #374.6/B:1-179 #374.7/B:1-179 #374.8/B:1-179 #374.9/B:1-179
> #374.10/B:1-179 #374.11/B:1-179 #374.12/B:1-179 #374.13/B:1-179
> #374.14/B:1-179 #374.15/B:1-179 #374.16/B:1-179 #374.17/B:1-179
> #374.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.853
> color (#!374.1-18 & sel) #2ae68fff
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #374
36 models selected
> select add #375
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
Alignment identifier is 1
Alignment identifier is 2
> select #375.1/A:157 #375.2/A:157 #375.3/A:157 #375.4/A:157 #375.5/A:157
> #375.6/A:157 #375.7/A:157 #375.8/A:157 #375.9/A:157 #375.10/A:157
> #375.11/A:157 #375.12/A:157 #375.13/A:157 #375.14/A:157 #375.15/A:157
> #375.16/A:157 #375.17/A:157 #375.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #375.1/A:1-157 #375.2/A:1-157 #375.3/A:1-157 #375.4/A:1-157
> #375.5/A:1-157 #375.6/A:1-157 #375.7/A:1-157 #375.8/A:1-157 #375.9/A:1-157
> #375.10/A:1-157 #375.11/A:1-157 #375.12/A:1-157 #375.13/A:1-157
> #375.14/A:1-157 #375.15/A:1-157 #375.16/A:1-157 #375.17/A:1-157
> #375.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 562.480
> color (#!375.1-18 & sel) #1a8ccbff
> select #375.1/B:179 #375.2/B:179 #375.3/B:179 #375.4/B:179 #375.5/B:179
> #375.6/B:179 #375.7/B:179 #375.8/B:179 #375.9/B:179 #375.10/B:179
> #375.11/B:179 #375.12/B:179 #375.13/B:179 #375.14/B:179 #375.15/B:179
> #375.16/B:179 #375.17/B:179 #375.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #375.1/B:1-179 #375.2/B:1-179 #375.3/B:1-179 #375.4/B:1-179
> #375.5/B:1-179 #375.6/B:1-179 #375.7/B:1-179 #375.8/B:1-179 #375.9/B:1-179
> #375.10/B:1-179 #375.11/B:1-179 #375.12/B:1-179 #375.13/B:1-179
> #375.14/B:1-179 #375.15/B:1-179 #375.16/B:1-179 #375.17/B:1-179
> #375.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.438
> color (#!375.1-18 & sel) #2ae68fff
> select add #375
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #375
18 models selected
> select add #375
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #375
36 models selected
> show #!356 models
> show #!394 models
> show #!394-410 models
> show #!313 models
> show #!316 models
> show #!116 models
> view SIDE
> show #!357 models
> hide #!356 models
> show #!356 models
> show #!357-373- models
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #!357-373 models
> color #371 #1a8ccb05 models
> color #371 #1a8ccb40 models
> color #356-373 #1a8ccb40 models
> save /Users/shoichi/Desktop/Hp_PilNO2.png supersample 2
> transparentBackground true
> color #356 #1a8ccb1a models
> color #356 #1a8ccb66 models
> color #356 #1a8ccb00 models
> color #356 #1a8ccb models transparency 0
> color #356 #1a8ccb66 models
> color #356-373 #1a8ccb66 models
> save /Users/shoichi/Desktop/Hp_PilNO2.png supersample 2
> transparentBackground true
> color #356 #1a8ccb4d models
> color #356-373 #1a8ccb4d models
> save /Users/shoichi/Desktop/Hp_PilNO2.png supersample 2
> transparentBackground true
> hide #!116 models
> show #!312 models
> color #312 #929292b3 models
> save /Users/shoichi/Desktop/Hp_PilNO2.png supersample 2
> transparentBackground true
> turn x 90
> hide #!393 models
> hide #!394-410 models
> show #!95 models
> show #!96 models
> show #!73 models
> hide #!313 models
> show #!81 models
> hide #!81 models
> show #!313 models
> hide #!313 models
> color #73 #b1bf99 models transparency 0
> color #73 #d8da64 models transparency 0
> color #73 #d4d663 models transparency 0
> color #73 #d9db65 models transparency 0
> color #96 #b694bf models transparency 0
> color #96 #ba98bf models transparency 0
> color #96 #af81bf models transparency 0
> color #96 #9865bf models transparency 0
> turn x 90
[Repeated 2 time(s)]
> select add #96
175860 atoms, 179010 bonds, 22950 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
[Repeated 1 time(s)]
> select add #96
175860 atoms, 179010 bonds, 22950 residues, 112 models selected
> select subtract #96
90 models selected
> color #96 #ad92c6 models transparency 0
> color #96 #b49cc6 models transparency 0
> color #96 #c0a6d2 models transparency 0
> color #96 #bfa5d1 models transparency 0
> color #96 #a18bb0 models transparency 0
[Repeated 1 time(s)]
> color #96 #9d72b0 models transparency 0
> color #96 #9f77b0 models transparency 0
> select add #73
129762 atoms, 131418 bonds, 16560 residues, 19 models selected
> select subtract #73
Nothing selected
> hide #!73.1-18#!95.1-18#!96.1-18#!374.1-18#!375.1-18 cartoons
> show #!73.1-18#!95.1-18#!96.1-18#!374.1-18#!375.1-18 surfaces
> color #73 #d2d17e models transparency 0
> color #73 #c7c677 models transparency 0
> color #96 #bb7378 models transparency 0
> color #96 #9f77b0 models transparency 0
> color #95 #bf9068 models transparency 0
> color #95 #bf7d5a models transparency 0
> color #95 #ca835e models transparency 0
> turn x 90
> show #!393 models
> hide #!312 models
> color #393 #8ae1e625 models
> color #393 #8ae1e627 models
> save /Users/shoichi/Desktop/Hptest.png supersample 2 transparentBackground
> true
> color #393 #8ae1e6 models transparency 0
> hide #!393 models
> color #26 #9292924d models
> color #370 #1a8ccb4d models
> color #26 #9292924d models
> color #32-36 #9292924d models
> color #42-47 #9292924d models
> color #54-59 #9292924d models
> save /Users/shoichi/Desktop/Hp-PilNO3.png supersample 2
> transparentBackground true
> turn x 90
[Repeated 2 time(s)]
> show #!393 models
> show #!393-410 models
> show #!312 models
> show #!313 models
> save /Users/shoichi/Desktop/Hp-PilNOSupp1.png supersample 2
> transparentBackground true
> color #393 #8ae1e633 models
> color #393-410 #8ae1e633 models
> save /Users/shoichi/Desktop/Hp-PilNOSupp1.png supersample 2
> transparentBackground true
> save /Users/shoichi/Desktop/Hp-PilNOSupp2.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-Karen/For-Figure/For-PilNO_figure4.cxs" includeMaps true
> turn x 10
> save /Users/shoichi/Desktop/Hp-PilNOSupp3.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-Karen/For-Figure/For-PilNO_figure4.cxs" includeMaps true
[Repeated 1 time(s)]
——— End of log from Tue Feb 14 13:49:39 2023 ———
opened ChimeraX session
> view SIDE
> color #10 #929292b3 models
> color #10 #929292 models transparency 0
> color #8 #929292 models transparency 0
> color #16 #929292 models transparency 0
> color #19 #929292 models transparency 0
> color #26 #929292 models transparency 0
> color #32-36 #929292 models transparency 0
> color #42-47 #929292 models transparency 0
> color #54-59 #929292 models transparency 0
> color #73 #929292 models transparency 0
> color #95-96 #929292 models transparency 0
> color #113-115 #929292 models transparency 0
> color #95 #ca835e models transparency 0
> color #96 #dbcb98 models transparency 0
> color #96 #9f77b0 models transparency 0
> color #73 #e7d7a0 models transparency 0
> color #177-216 #929292 models transparency 0
> color #239-259 #929292 models transparency 0
> color #312 #929292 models transparency 0
> color #393-410 #929292 models transparency 0
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-Karen/For-Figure/For-PilNO_figure5.cxs" includeMaps true
——— End of log from Thu Feb 16 10:05:11 2023 ———
opened ChimeraX session
> hide #!8 models
> hide #!8-410 models
> show #!356 models
> show #!356-373 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/New_PilN-
> PilO-predictions/prediction/PilM-region.mrc
Opened PilM-region.mrc as #376, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00704, step 1, values float32
> hide #!373 models
> hide #!372 models
> hide #!371 models
> hide #!370 models
> hide #!369 models
> hide #!368 models
> hide #!366 models
> hide #!365 models
> hide #!357 models
> hide #!356 models
> hide #!358 models
> hide #!360 models
> hide #!359 models
> hide #!361 models
> hide #!362 models
> hide #!363 models
> hide #!364 models
> show #!366 models
> hide #!367 models
> hide #!366 models
> show #!370 models
> hide #!370 models
> show #!371 models
> hide #!371 models
> show #!373 models
> ui tool show "Show Volume Menu"
> ui tool show "Hide Dust"
> surface dust #376 size 25.78
> select add #376
2 models selected
> select subtract #376
Nothing selected
> show #!372 models
> select add #376
2 models selected
> select subtract #376
Nothing selected
No segmentation chosen
> ui mousemode right "translate selected models"
> select add #376
2 models selected
> select subtract #376
Nothing selected
> ui mousemode right "rotate selected models"
> select add #376
2 models selected
> select subtract #376
Nothing selected
> select add #376
2 models selected
> view matrix models
> #376,0.98277,0.032522,-0.18197,34.368,-0.046493,0.99624,-0.073045,34.375,0.17891,0.080246,0.98059,-90.324
> ui mousemode right "translate selected models"
> view matrix models
> #376,0.98277,0.032522,-0.18197,-79.757,-0.046493,0.99624,-0.073045,-10.087,0.17891,0.080246,0.98059,-56.504
> ui mousemode right "rotate selected models"
> view matrix models
> #376,0.967,0.056483,0.24844,-172.15,-0.0090409,0.98211,-0.18809,4.4084,-0.25462,0.17964,0.95021,83.399
> view matrix models
> #376,-0.60217,0.66062,-0.44831,378.58,-0.77001,-0.6289,0.10754,755.39,-0.2109,0.40996,0.88739,5.2397
> ui mousemode right "translate selected models"
> view matrix models
> #376,-0.60217,0.66062,-0.44831,373.88,-0.77001,-0.6289,0.10754,781.8,-0.2109,0.40996,0.88739,71.704
> ui mousemode right "rotate selected models"
> view matrix models
> #376,-0.61952,0.74722,-0.24052,308.68,-0.75493,-0.65112,-0.078291,822.37,-0.21511,0.13307,0.96748,146.22
> ui mousemode right "translate selected models"
> view matrix models
> #376,-0.61952,0.74722,-0.24052,304.41,-0.75493,-0.65112,-0.078291,825.69,-0.21511,0.13307,0.96748,158.03
> ui tool show "Fit in Map"
> hide #!372 models
> fitmap #376 inMap #373
Fit map PilM-region.mrc in map Cage-bottom.mrc copy using 51051 points
correlation = 0.9942, correlation about mean = 0.99, overlap = 5.78
steps = 256, shift = 15.5, angle = 17.4 degrees
Position of PilM-region.mrc (#376) relative to Cage-bottom.mrc copy (#373)
coordinates:
Matrix rotation and translation
0.99999998 -0.00003125 -0.00021508 0.16909182
0.00003128 0.99999999 0.00013005 0.03050335
0.00021507 -0.00013005 0.99999997 0.29848893
Axis -0.51347313 -0.84918232 0.12342903
Axis point -1431.30606940 0.00000000 605.18040071
Rotation angle (degrees) 0.01451152
Shift along axis -0.07588481
> fitmap #376 inMap #373
Fit map PilM-region.mrc in map Cage-bottom.mrc copy using 51051 points
correlation = 0.9945, correlation about mean = 0.9906, overlap = 5.783
steps = 40, shift = 0.00802, angle = 0.00553 degrees
Position of PilM-region.mrc (#376) relative to Cage-bottom.mrc copy (#373)
coordinates:
Matrix rotation and translation
0.99999995 -0.00005445 -0.00030479 0.19778208
0.00005448 1.00000000 0.00010322 0.02982914
0.00030478 -0.00010323 0.99999995 0.24925006
Axis -0.31627866 -0.93387034 0.16689514
Axis point -844.42308357 0.00000000 598.39652232
Rotation angle (degrees) 0.01869952
Shift along axis -0.04881218
> vop gaussian #376 sd 3
Opened PilM-region.mrc gaussian as #377, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> select subtract #376
Nothing selected
> volume #377 level 0.01
> volume #377 level 0.005
> volume #377 level 0.004
> volume #377 level 0.0035
> volume #377 level 0.003
> ui tool show "Hide Dust"
> surface dust #377 size 25.78
> surface dust #377 size 33.49
> surface dust #377 size 33.1
[Repeated 1 time(s)]
> surface dust #377 size 85.17
[Repeated 1 time(s)]
> surface dust #377 size 60.04
[Repeated 1 time(s)]
> hide #!373 models
> ui tool show "Map Eraser"
> volume erase #377 center 539.27,291.53,227.08 radius 160.97
> volume erase #377 center 474.05,153.32,354.18 radius 160.97
> volume erase #377 center -21.065,204.45,232.92 radius 160.97
> volume erase #377 center 86.089,257.79,99.189 radius 160.97
> volume erase #377 center 362.63,258.65,93.85 radius 160.97
> volume erase #377 center 262.28,-35.94,826.76 radius 160.97
> volume erase #377 center 52.331,24.155,679.93 radius 160.97
> volume erase #377 center 296.78,-10.212,272.97 radius 160.97
> volume erase #377 center 185.17,91.817,207.9 radius 160.97
> volume erase #377 center 3.0858,443.9,143.94 radius 160.97
> volume erase #377 center 334.43,607.52,189.9 radius 160.97
> volume erase #377 center 397.03,538.52,216.64 radius 160.97
> volume erase #377 center -42.621,293.09,351.97 radius 160.97
> volume erase #377 center 155.91,545.58,384.35 radius 160.97
> volume erase #377 center 144.78,438.64,160.55 radius 160.97
> volume erase #377 center 350.83,61.168,119.72 radius 160.97
> volume erase #377 center 248.14,-77.305,119.8 radius 160.97
> volume erase #377 center 26.083,54.058,402.34 radius 160.97
> volume erase #377 center -180.66,56.257,610.07 radius 160.97
> volume erase #377 center -55.957,361.38,812.94 radius 160.97
> volume erase #377 center 44.962,420.98,769.52 radius 160.97
> volume erase #377 center 481.64,480.31,929.48 radius 160.97
> volume erase #377 center 219.42,164.69,142.92 radius 160.97
> show #!373 models
> show #!356-373 models
> gide #!356-373 models
Unknown command: gide #!356-373 models
> ui mousemode right zoom
> hide #!356 models
> hide #!356-372 models
> hide #!373 models
> ui tool show "Map Eraser"
> volume erase #377 center 217.06,276.86,342.71 radius 22.76
> ui mousemode right zoom
> ui mousemode right select
Drag select of eraser sphere, 6 of 1000 triangles
> ui mousemode right "translate selected models"
> view matrix models #378,1,0,0,233.49,0,1,0,279.59,0,0,1,292.79
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models #378,1,0,0,235.71,0,1,0,276.33,0,0,1,293.86
> view matrix models #378,1,0,0,243.55,0,1,0,275.54,0,0,1,296.94
> volume erase #377 center 243.55,275.54,296.94 radius 9.1499
> ui mousemode right translate
> ui mousemode right "translate selected models"
> ui mousemode right zoom
> show #!356-373 models
> view orient
[Repeated 1 time(s)]
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> volume model #377-391 level 0.008
Expected a density maps specifier or a keyword
> volume #377-391 level 0.008
> volume #377-391 level 0.007
> volume #377-391 level 0.006
> volume #377-391 level 0.0055
> volume #377-391 level 0.005
> volume #377-391 level 0.0056
> volume #415-418 level 0.0056
> volume #415-418 level 0.005
> volume #377-391 level 0.005
> volume #377-391 level 0.0045
> volume #377-391 level 0.004
> volume #377-391 level 0.003
> volume #377-391 level 0.0035
> volume #377-391 level 0.0038
> volume #415-418 level 0.0038
> surface dust #378 size 25.78
> surface dust #378 size 25.9
> surface dust #378 size 81.31
> surface dust #378 size 79.43
> surface dust #378 size 74.07
> ui windowfill toggle
[Repeated 3 time(s)]
> surface dust #378-391 size 74.07
> surface dust #415-418 size 74.07
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure6.cxs includeMaps true
> color height #415 axis 0,-0.5,-1 update true coordinateSystem #415 palette
> blues-5
> color height #415 axis 0,-0.5,-1 update true coordinateSystem #415 palette
> blues-9
> color height #415 axis 0,-0.5,1 update true coordinateSystem #415 palette
> blues-9
> color height #415 axis 0,0,1 update true coordinateSystem #415 palette
> blues-9
> hide #!356 models
> hide #!356-373 models
> volume #!377-391,415-418 showOutlineBox true
> ui mousemode right "crop volume"
> volume #377 region 0,0,0,159,159,189
> volume #378 region 0,0,0,159,159,106
> volume #415 region 0,0,0,159,159,91
> volume #417 region 0,0,0,143,159,199
> volume #389 region 0,0,0,159,159,117
> volume #387 region 0,0,0,159,159,90
> volume #388 region 0,0,0,159,159,91
> volume #386 region 0,0,0,159,159,92
> volume #390 region 0,0,0,159,159,91
> volume #385 region 0,0,0,159,159,93
> volume #391 region 0,20,0,159,159,199
> volume #384 region 0,0,0,159,143,199
> show #!376 models
> hide #!376 models
> hide #!378 models
> hide #!379 models
> hide #!380 models
> hide #!381 models
> hide #!382 models
> hide #!383 models
> hide #!384 models
> hide #!385 models
> hide #!386 models
> hide #!387 models
> hide #!391 models
> hide #!390 models
> hide #!389 models
> hide #!388 models
> show #!376 models
> hide #!377 models
> hide #!415 models
> hide #!416 models
> hide #!417 models
> hide #!418 models
> hide #!376 models
> show #!377 models
> volume #377 region 13,0,0,159,159,189
> volume #377 region 13,55,0,159,159,189
> volume #377 region 13,59,0,159,159,189
> volume #377 region 13,59,0,159,91,189
> volume #377 region 13,59,0,159,91,99
> volume #377 region 13,59,36,159,91,99
> volume #377 region 13,16,36,159,121,99
> volume #377 region 13,16,36,159,92,99
> volume #377 region 13,60,36,159,92,99
> volume #377 region 13,60,36,100,92,99
> volume #377 region 78,60,36,100,92,99
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-9
> volume #377 region 78,62,36,100,92,99
> volume #377 region 78,62,36,100,92,144
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-9
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> volume #377 region 78,62,0,100,92,144
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-9
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> volume #377 region 78,62,35,100,92,144
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> volume #377 region 78,62,35,103,92,144
> volume #377 region 78,53,35,103,92,144
> volume #377 region 78,60,35,103,92,144
> volume #377 region 78,60,35,103,92,199
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-9
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> volume #377 region 78,60,35,103,92,177
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
[Repeated 1 time(s)]
> volume #377 region 78,60,35,103,92,140
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> volume #377 region 78,60,35,103,92,168
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-9
> volume #377 region 78,60,35,103,92,147
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-9
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> volume #377 region 78,60,35,103,92,159
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> volume #377 region 78,60,35,103,92,154
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> close #378-391
> close #415-418
> ui mousemode right zoom
> volume #!377 showOutlineBox false
> view orient
> show #!356 models
> show #!356-373 models
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #378, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #379, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #380, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #381, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #382, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #383, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #384, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #385, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #386, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #387, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #388, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #389, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #390, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #391, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #415, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #416, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #417, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> turn z 20 models #377 center #8
> volume copy #377
Opened PilM-region.mrc gaussian copy as #418, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #377 show
> volume #!356-373,377-391,415-418 showOutlineBox true
> show #!355 models
> hide #!355 models
> hide #!377 models
> show #!377 models
> hide #!377 models
> hide #!373 models
> hide #!372 models
> hide #!371 models
> hide #!370 models
> hide #!369 models
> hide #!368 models
> hide #!367 models
> hide #!366 models
> hide #!365 models
> hide #!364 models
> hide #!363 models
> hide #!362 models
> hide #!361 models
> hide #!360 models
> hide #!359 models
> hide #!356 models
> hide #!357 models
> hide #!358 models
> show #!377 models
> select add #377
2 models selected
> select add #377
2 models selected
> select add #377
2 models selected
> select add #377
2 models selected
> select add #378
4 models selected
> select add #377
4 models selected
> select add #377
4 models selected
> select clear
> select add #378
2 models selected
> select add #377
4 models selected
> select add #379
6 models selected
> select add #380
8 models selected
> select add #381
10 models selected
> select add #382
12 models selected
> select add #383
14 models selected
> select add #384
16 models selected
> select add #385
18 models selected
> select add #386
20 models selected
> select add #387
22 models selected
> select add #388
24 models selected
> select add #388
24 models selected
> select add #389
26 models selected
> select subtract #389
24 models selected
> select add #390
26 models selected
> select add #390
26 models selected
> select add #389
28 models selected
> select add #391
30 models selected
> view orient
> turn x 90
[Repeated 2 time(s)]
> ui mousemode right "crop volume"
> volume #381 region 0,0,0,159,159,199
> volume sel showOutlineBox false
> select add #415
32 models selected
> select add #416
34 models selected
> select add #417
36 models selected
> select add #418
38 models selected
> volume sel showOutlineBox false
> select clear
> volume #378 region 0,0,0,150,159,199
> select add #415
2 models selected
> volume sel showOutlineBox true
> view orient
> turn x 90
[Repeated 2 time(s)]
> volume #418 region 0,0,0,159,159,199
> volume #417 region 0,0,0,159,159,199
> hide #!377 models
> show #!377 models
> hide #!378 models
> hide #!379 models
> hide #!381 models
> hide #!382 models
> hide #!383 models
> hide #!385 models
> hide #!386 models
> hide #!387 models
> hide #!389 models
> hide #!388 models
> hide #!390 models
> hide #!391 models
> hide #!384 models
> hide #!415 models
> hide #!416 models
> hide #!417 models
> hide #!418 models
> select add #415
2 models selected
> select add #415
2 models selected
> select add #415
2 models selected
> select clear
> hide #!380 models
> volume #!377 showOutlineBox true
> show #!378 models
> volume #!377-378 showOutlineBox false
> volume #!377-378 showOutlineBox true
> volume #!377-378 showOutlineBox false
> hide #!378 models
> volume #!377 showOutlineBox true
> volume #377 region 0,0,0,159,159,130
> hide #!377 models
> show #!378 models
> volume #!378 showOutlineBox true
> volume #378 region 0,0,0,150,159,127
[Repeated 1 time(s)]
> volume #378 region 0,0,0,150,159,143
> show #!377 models
> hide #!378 models
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> volume #377 region 0,0,0,159,159,110
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> volume #377 region 0,0,0,159,159,126
> volume #377 region 0,0,32,159,159,126
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> volume #377 region 0,0,32,159,159,82
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> view orient
> turn x 90
[Repeated 2 time(s)]
> volume #377 region 0,0,32,159,159,76
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-3
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> volume #377 region 0,0,32,159,159,88
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> hide #!377 models
> show #!378 models
> volume #378 region 0,0,0,150,159,138
> volume #378 region 0,0,32,150,159,88
> hide #!378 models
> show #!379 models
> volume #!379 showOutlineBox true
> ui mousemode right zoom
> ui mousemode right "crop volume"
> volume #379 region 0,0,0,159,159,196
> volume #379 region 0,0,32,159,159,88
> hide #!379 models
> show #!380 models
> volume #!380 showOutlineBox true
> volume #380 region 0,0,0,159,159,195
> volume #380 region 0,0,0,32,159,88
> hide #!379 models
> show #!379 models
> show #!380 models
> hide #!379 models
> volume #380 region 0,0,0,159,159,88
> show #!379 models
> hide #!379 models
> volume #380 region 0,0,3,159,159,88
> volume #380 region 0,0,0,159,159,88
> volume #380 region 0,0,32,159,159,88
> hide #!380 models
> show #!381 models
> ui mousemode right zoom
> ui mousemode right "crop volume"
> volume #!381 showOutlineBox true
> volume #381 region 0,0,0,159,159,189
> volume #381 region 0,0,32,159,159,88
> hide #!381 models
> show #!382 models
> volume #!382 showOutlineBox true
> volume #382 region 0,0,0,159,159,194
> volume #382 region 0,0,32,159,159,88
> hide #!382 models
> show #!383 models
> volume #!383 showOutlineBox true
> volume #383 region 0,0,0,159,159,192
> volume #383 region 0,0,32,159,159,88
> show #!384 models
> hide #!383 models
> volume #!384 showOutlineBox true
> volume #384 region 0,0,0,159,159,191
[Repeated 1 time(s)]
> volume #384 region 0,0,32,159,159,88
> hide #!384 models
> show #!385 models
> volume #!385 showOutlineBox true
> volume #385 region 0,0,0,159,159,189
> volume #385 region 0,0,32,159,159,88
> hide #!385 models
> show #!386 models
> volume #!386 showOutlineBox true
> volume #386 region 0,0,0,159,159,194
> volume #386 region 0,0,32,159,159,88
> hide #!386 models
> show #!387 models
> volume #!387 showOutlineBox true
> volume #387 region 0,0,0,159,159,195
> volume #387 region 0,0,32,159,159,88
> hide #!387 models
> show #!388 models
> volume #!388 showOutlineBox true
> volume #388 region 0,0,0,159,159,193
> volume #388 region 0,0,32,159,159,88
> hide #!388 models
> show #!389 models
> volume #!389 showOutlineBox true
> volume #389 region 0,0,0,159,159,195
> volume #389 region 0,0,32,159,159,88
> hide #!389 models
> show #!390 models
> volume #!390 showOutlineBox true
> volume #390 region 0,0,0,159,159,197
> volume #390 region 0,0,32,159,159,88
> hide #!390 models
> show #!391 models
> volume #!391 showOutlineBox true
> volume #391 region 0,0,0,159,159,196
> volume #391 region 0,0,32,159,159,88
> show #!415 models
> hide #!391 models
> volume #415 region 0,0,0,159,159,196
> volume #415 region 0,0,32,159,159,88
> show #!416 models
> hide #!415 models
> volume #!416 showOutlineBox true
> volume #416 region 0,0,0,159,159,196
> volume #416 region 0,0,0,32,159,88
[Repeated 3 time(s)]
> volume #416 region 0,0,0,159,159,88
> lume #416 region 0,0,32,159,159,88
Unknown command: lume #416 region 0,0,32,159,159,88
> volume #416 region 0,0,32,159,159,88
> show #!415 models
> hide #!415 models
> hide #!416 models
> show #!417 models
> volume #!417 showOutlineBox true
> volume #417 region 0,0,0,159,159,194
> volume #417 region 0,0,32,159,159,88
> hide #!417 models
> show #!418 models
> volume #!418 showOutlineBox true
> volume #418 region 0,0,0,159,159,195
> volume #418 region 0,0,32,159,159,88
> show #!417 models
> show #!416 models
> hide #!416 models
> show #!416 models
> show #!415 models
> show #!377 models
> show #!378 models
> show #!379 models
> show #!380 models
> show #!381 models
> show #!382 models
> show #!383 models
> show #!384 models
> show #!385 models
> show #!386 models
> show #!387 models
> show #!388 models
> show #!389 models
> show #!390 models
> show #!391 models
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-5
> color height #379 axis 0,0,1 update true coordinateSystem #379 palette
> blues-5
> color height #380 axis 0,0,1 update true coordinateSystem #380 palette
> blues-5
> color height #381-391 axis 0,0,1 update true coordinateSystem #381-391
> palette blues-5
Invalid "coordinateSystem" argument: Must specify 1 model, got 11
> color height #381 axis 0,0,1 update true coordinateSystem #381 palette
> blues-5
> color height #382 axis 0,0,1 update true coordinateSystem #382 palette
> blues-5
> color height #383 axis 0,0,1 update true coordinateSystem #383 palette
> blues-5
> color height #384 axis 0,0,1 update true coordinateSystem #384 palette
> blues-5
> color height #385 axis 0,0,1 update true coordinateSystem #385 palette
> blues-5
> color height #386 axis 0,0,1 update true coordinateSystem #386 palette
> blues-5
> color height #387 axis 0,0,1 update true coordinateSystem #387 palette
> blues-5
> color height #388 axis 0,0,1 update true coordinateSystem #388 palette
> blues-5
> color height #389 axis 0,0,1 update true coordinateSystem #389 palette
> blues-5
> color height #390 axis 0,0,1 update true coordinateSystem #390 palette
> blues-5
> color height #391 axis 0,0,1 update true coordinateSystem #391 palette
> blues-5
> color height #415axis 0,0,1 update true coordinateSystem #415 palette
> blues-5
Missing or invalid "surfaces" argument: invalid surfaces specifier
> color height #415 axis 0,0,1 update true coordinateSystem #415 palette
> blues-5
> color height #416 axis 0,0,1 update true coordinateSystem #416 palette
> blues-5
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-5
> color height #418 axis 0,0,1 update true coordinateSystem #418 palette
> blues-5
> select add #377
2 models selected
> select add #378
4 models selected
> select add #379
6 models selected
> select add #380
8 models selected
> select add #381
10 models selected
> select add #382
12 models selected
> select add #383
14 models selected
> select add #385
16 models selected
> select add #386
18 models selected
> select add #387
20 models selected
> select add #384
22 models selected
> select add #388
24 models selected
> select add #389
26 models selected
> select add #390
28 models selected
> select add #391
30 models selected
> select add #415
32 models selected
> select add #416
34 models selected
> select add #417
36 models selected
> select add #418
38 models selected
> volume sel showOutlineBox false
> select clear
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure6.cxs includeMaps true
> ui tool show "Hide Dust"
> surface dust #377 size 60.04
[Repeated 1 time(s)]
> surface dust #377 size 57.96
> surface dust #377 size 91.38
[Repeated 1 time(s)]
> surface dust #377 size 94.59
> surface dust #377 size 55.3
> hide #!377 models
> show #!377 models
> hide #!377 models
> surface dust #378 size 25.78
> surface dust #378 size 26.21
> surface dust #378 size 70.67
> surface dust #378-391 size 70.67
> surface dust #415-418 size 70.67
> show #!356 models
> volume #!356,378-391,415-418 showOutlineBox false
> show #!356-373 models
> select add #356
2 models selected
> select add #357
4 models selected
> select add #358
6 models selected
> select add #359
8 models selected
> select add #360
10 models selected
> select add #361
12 models selected
> select add #362
14 models selected
> select add #363
16 models selected
> select add #364
18 models selected
> select add #365
20 models selected
> select add #366
22 models selected
> select add #367
24 models selected
> select add #368
26 models selected
> select add #370
28 models selected
> select add #369
30 models selected
> select add #371
32 models selected
> select add #372
34 models selected
> select add #373
36 models selected
> volume sel showOutlineBox false
> select clear
> turn x 90
[Repeated 2 time(s)]
> select add #356
2 models selected
> select subtract #356
Nothing selected
> ui mousemode right zoom
> hide #!356 models
> show #!356 models
> color #356 #4796c8 models transparency 0
> color #356 #6aa5ce models transparency 0
> color #356 #6aa6cf models transparency 0
> color #356 #659ec6 models transparency 0
> color #356 #5382a3 models transparency 0
> color #356 #83ccff models transparency 0
> color #356 #77bae9 models transparency 0
> color #356 #77b9e8 models transparency 0
> color #356 #1a8ccb models transparency 0
> color #356 #56b6f3 models transparency 0
> color #356 #50a8e1 models transparency 0
> color #356 #58bbfa models transparency 0
> color #356 #5abffe models transparency 0
> color #356 #55b3ef models transparency 0
> color #356 #77b9e8 models transparency 0
> show #!313 models
> color #356 #98c8ee models transparency 0
> color #356 #91cdee models transparency 0
> color #356 #5ba5ee models transparency 0
> color #356 #489aee models transparency 0
> color #356 #50a3ee models transparency 0
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-9
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-3
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-5
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-6
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-9
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-8
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-5
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-3
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-4
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-5
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-6
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-4
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-5
> color #356 #00bdff models transparency 0
> color #356 #4f98e5 models transparency 0
> color #356 #45caf4 models transparency 0
> color #356 #4f98e5 models transparency 0
> color #356 #1a8ccb models transparency 0
> color #356 #4a9ed2 models transparency 0
> color #356-373 #4a9ed2 models transparency 0
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure6.cxs includeMaps true
> show #!393 models
> show #!393-410 models
> show #!316 models
> show #!312 models
> show #!8 models
> show #!10 models
> show #!16 models
> show #!19 models
> show #!26 models
> show #!32-36 models
> show #!42-47 models
> show #!54-59 models
> show #!73 models
> show #!95-96 models
> hide #!95 models
> hide #!96 models
> show #! 113-115 models
> show #! 177-216 models
> show #! 239-259 models
> hide #!73 models
> show #! 312 models
> show #! 313 models
> show #! 316 models
> view SIDE
> set bgColor white
> set bgColor #ffffff00
> set bgColor gray
> set bgColor #80808000
> set bgColor black
> set bgColor transparent
> save /Users/shoichi/Desktop/Hpmotor.png supersample 2 transparentBackground
> true
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure6.cxs includeMaps true
[Repeated 1 time(s)]
——— End of log from Thu Feb 16 17:50:40 2023 ———
opened ChimeraX session
> hide #!8 models
> hide #!10 models
> hide #!10-418 models
> show #!370 models
> hide #!370 models
> show #!371 models
> show #!372 models
> show #!373 models
> show #!374 models
> show #!375 models
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #374.1/A:157 #374.2/A:157 #374.3/A:157 #374.4/A:157 #374.5/A:157
> #374.6/A:157 #374.7/A:157 #374.8/A:157 #374.9/A:157 #374.10/A:157
> #374.11/A:157 #374.12/A:157 #374.13/A:157 #374.14/A:157 #374.15/A:157
> #374.16/A:157 #374.17/A:157 #374.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #374.1/A:1-157 #374.2/A:1-157 #374.3/A:1-157 #374.4/A:1-157
> #374.5/A:1-157 #374.6/A:1-157 #374.7/A:1-157 #374.8/A:1-157 #374.9/A:1-157
> #374.10/A:1-157 #374.11/A:1-157 #374.12/A:1-157 #374.13/A:1-157
> #374.14/A:1-157 #374.15/A:1-157 #374.16/A:1-157 #374.17/A:1-157
> #374.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 560.558
> select #374.1/B:179 #374.2/B:179 #374.3/B:179 #374.4/B:179 #374.5/B:179
> #374.6/B:179 #374.7/B:179 #374.8/B:179 #374.9/B:179 #374.10/B:179
> #374.11/B:179 #374.12/B:179 #374.13/B:179 #374.14/B:179 #374.15/B:179
> #374.16/B:179 #374.17/B:179 #374.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #374.1/B:1-179 #374.2/B:1-179 #374.3/B:1-179 #374.4/B:1-179
> #374.5/B:1-179 #374.6/B:1-179 #374.7/B:1-179 #374.8/B:1-179 #374.9/B:1-179
> #374.10/B:1-179 #374.11/B:1-179 #374.12/B:1-179 #374.13/B:1-179
> #374.14/B:1-179 #374.15/B:1-179 #374.16/B:1-179 #374.17/B:1-179
> #374.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.853
> color (#!374.1-18 & sel) #fff5f0ff
> color (#!374.1-18 & sel) #fff4f0ff
> color (#!374.1-18 & sel) #ffebf8ff
> color (#!374.1-18 & sel) #fcccffff
> color (#!374.1-18 & sel) #ffbbfaff
> color (#!374.1-18 & sel) #ff99f2ff
> color (#!374.1-18 & sel) #ff94f0ff
> color (#!374.1-18 & sel) #ffbcdbff
> color (#!374.1-18 & sel) #ffccadff
> color (#!374.1-18 & sel) #ffccacff
> color (#!374.1-18 & sel) #ffcdacff
> color (#!374.1-18 & sel) #ffed91ff
> color (#!374.1-18 & sel) #ffed90ff
> color (#!374.1-18 & sel) #faff5aff
> color (#!374.1-18 & sel) #faff58ff
> color (#!374.1-18 & sel) #fdff49ff
> color (#!374.1-18 & sel) #ffe833ff
> color (#!374.1-18 & sel) #ffe733ff
> color (#!374.1-18 & sel) #fff041ff
> color (#!374.1-18 & sel) #feff5aff
> color (#!374.1-18 & sel) #f7ff61ff
> color (#!374.1-18 & sel) #f5ff65ff
> color (#!374.1-18 & sel) #f4ff66ff
> color (#!374.1-18 & sel) #8cff8aff
> color (#!374.1-18 & sel) #8bff89ff
> color (#!374.1-18 & sel) #9aff71ff
> color (#!374.1-18 & sel) #aaff6aff
> color (#!374.1-18 & sel) #aeff6aff
> color (#!374.1-18 & sel) #aeff66ff
> color (#!374.1-18 & sel) #aeff65ff
> color (#!374.1-18 & sel) #c8ff6aff
> color (#!374.1-18 & sel) #d5ff5fff
> color (#!374.1-18 & sel) #d6ff5cff
> color (#!374.1-18 & sel) #deff40ff
[Repeated 1 time(s)]
> color (#!374.1-18 & sel) #feff28ff
> color (#!374.1-18 & sel) #fefe28ff
> color (#!374.1-18 & sel) #f4f526ff
> color (#!374.1-18 & sel) #eff025ff
> color (#!374.1-18 & sel) #e9ea24ff
> select clear
> select #374.1/B:179 #374.2/B:179 #374.3/B:179 #374.4/B:179 #374.5/B:179
> #374.6/B:179 #374.7/B:179 #374.8/B:179 #374.9/B:179 #374.10/B:179
> #374.11/B:179 #374.12/B:179 #374.13/B:179 #374.14/B:179 #374.15/B:179
> #374.16/B:179 #374.17/B:179 #374.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #374.1/B:1-179 #374.2/B:1-179 #374.3/B:1-179 #374.4/B:1-179
> #374.5/B:1-179 #374.6/B:1-179 #374.7/B:1-179 #374.8/B:1-179 #374.9/B:1-179
> #374.10/B:1-179 #374.11/B:1-179 #374.12/B:1-179 #374.13/B:1-179
> #374.14/B:1-179 #374.15/B:1-179 #374.16/B:1-179 #374.17/B:1-179
> #374.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.853
> color (#!374.1-18 & sel) #7af1efff
> color (#!374.1-18 & sel) #2affbdff
> color (#!374.1-18 & sel) #28ffbcff
> color (#!374.1-18 & sel) #25e9acff
> color (#!374.1-18 & sel) #24e6aaff
> color (#!374.1-18 & sel) #23dea4ff
> color (#!374.1-18 & sel) #22daa1ff
> select clear
> select add #375
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #375.1/B:179 #375.2/B:179 #375.3/B:179 #375.4/B:179 #375.5/B:179
> #375.6/B:179 #375.7/B:179 #375.8/B:179 #375.9/B:179 #375.10/B:179
> #375.11/B:179 #375.12/B:179 #375.13/B:179 #375.14/B:179 #375.15/B:179
> #375.16/B:179 #375.17/B:179 #375.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #375.1/B:1-179 #375.2/B:1-179 #375.3/B:1-179 #375.4/B:1-179
> #375.5/B:1-179 #375.6/B:1-179 #375.7/B:1-179 #375.8/B:1-179 #375.9/B:1-179
> #375.10/B:1-179 #375.11/B:1-179 #375.12/B:1-179 #375.13/B:1-179
> #375.14/B:1-179 #375.15/B:1-179 #375.16/B:1-179 #375.17/B:1-179
> #375.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.438
> color (#!375.1-18 & sel) #77b9e8ff
> color (#!375.1-18 & sel) #22daa1ff
> select clear
> hide #!375 models
> hide #!374 models
> show #411 models
> show #412 models
> hide #!371 models
> show #!371 models
> hide #!372 models
> hide #!373 models
> show #!384 models
> hide #!384 models
> show #!415 models
> hide #!415 models
> show #!416 models
> select add #411
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> hide sel cartoons
> show sel surfaces
> select add #17
45875 atoms, 46342 bonds, 68 pseudobonds, 5436 residues, 5 models selected
> select subtract #17
5585 atoms, 5644 bonds, 336 residues, 3 models selected
> select add #412
11170 atoms, 11288 bonds, 672 residues, 4 models selected
> hide sel cartoons
> show sel surfaces
> select subtract #412
5585 atoms, 5644 bonds, 336 residues, 5 models selected
Alignment identifier is 411/A
Alignment identifier is 411/B
> select #411/A:157
23 atoms, 22 bonds, 1 residue, 1 model selected
> select #411/A:1-157
2567 atoms, 2595 bonds, 157 residues, 1 model selected
> color (#!411 & sel) #4796c8ff
> color (#!411 & sel) #77b9e8ff
> color (#!411 & sel) #1a8ccbff
> select #411/B:179
18 atoms, 17 bonds, 1 residue, 1 model selected
> select #411/B:1-179
3018 atoms, 3049 bonds, 179 residues, 1 model selected
> color (#!411 & sel) #22daa1ff
> hide #!371 models
> show #!371 models
> select add #412
8603 atoms, 8693 bonds, 515 residues, 3 models selected
> select add #411
11170 atoms, 11288 bonds, 672 residues, 5 models selected
> select subtract #411
5585 atoms, 5644 bonds, 336 residues, 5 models selected
Alignment identifier is 412/A
Alignment identifier is 412/B
> select #412/A:109-157
807 atoms, 822 bonds, 49 residues, 1 model selected
> select #412/A:1-157
2567 atoms, 2595 bonds, 157 residues, 1 model selected
> color (#!412 & sel) #1a8ccbff
> select #412/B:179
18 atoms, 17 bonds, 1 residue, 1 model selected
> select #412/B:1-179
3018 atoms, 3049 bonds, 179 residues, 1 model selected
> color (#!412 & sel) #22daa1ff
> select clear
> ui mousemode right translate
> ui mousemode right zoom
> ui mousemode right translate
> view SIDE
> show #!403 models
> hide #!403 models
> show #!405 models
> hide #!405 models
> show #!406 models
> color #371 #4a9ed243 models
> color #371 #4a9ed242 models
> select add #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #412,0.76847,0.41347,-0.48835,152.13,0.5626,-0.072982,0.8235,478.92,0.30486,-0.90759,-0.2887,477.99
> view matrix models
> #412,0.72127,0.52493,-0.45191,147.57,0.56462,-0.067659,0.82257,478.76,0.40122,-0.84845,-0.34519,477.07
> view matrix models
> #412,0.71877,0.5299,-0.45009,147.36,0.58755,-0.11686,0.80071,480.94,0.3717,-0.83997,-0.39533,478.02
> view matrix models
> #412,0.71799,0.5315,-0.44944,147.29,0.59462,-0.13272,0.79298,481.66,0.36182,-0.83659,-0.41133,478.3
> view matrix models
> #412,0.71751,0.53252,-0.44901,147.25,0.59899,-0.1427,0.78794,482.12,0.35552,-0.8343,-0.42136,478.47
> view matrix models
> #412,0.71583,0.53614,-0.44736,147.09,0.6141,-0.17843,0.7688,483.78,0.33237,-0.82505,-0.45697,479.03
> ui mousemode right "translate selected models"
> view matrix models
> #412,0.71583,0.53614,-0.44736,147.6,0.6141,-0.17843,0.7688,478.39,0.33237,-0.82505,-0.45697,476.41
> ui mousemode right "rotate selected models"
> view matrix models
> #412,0.71638,0.53494,-0.44792,147.66,0.6092,-0.16662,0.77532,477.84,0.34012,-0.8283,-0.44525,476.24
> view matrix models
> #412,0.71678,0.53407,-0.44832,147.7,0.60559,-0.15806,0.77992,477.44,0.34567,-0.83053,-0.43673,476.1
> select subtract #412
2 models selected
> view SIDE
> ui mousemode right zoom
> color #416 #e5bf99e5 models
> show #!415 models
> hide #!415 models
> hide #!416 models
> show #!416 models
> color height #416 axis 0,0,1 update true coordinateSystem #416 palette
> blues-5
> color #416 #e5bf9961 models
> color height #416 axis 0,0,1 update true coordinateSystem #416 palette
> blues-5
> select add #412
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #412,0.78981,0.41151,-0.45482,151.37,0.55839,-0.17563,0.81077,482.66,0.25376,-0.89432,-0.3685,479.51
> ui mousemode right "translate selected models"
> view matrix models
> #412,0.78981,0.41151,-0.45482,151.37,0.55839,-0.17563,0.81077,478.07,0.25376,-0.89432,-0.3685,476.84
> ui mousemode right "rotate selected models"
> view matrix models
> #412,0.77951,0.45917,-0.42605,149.12,0.54819,-0.17099,0.81869,477.75,0.30307,-0.87174,-0.385,476.35
> view matrix models
> #412,0.77423,0.47822,-0.41458,148.22,0.54733,-0.17698,0.81799,477.97,0.3178,-0.86022,-0.39877,476.24
> select clear
> color #416 #77b9e8 models transparency 0
> color #416 #a1e8e6 models transparency 0
> color #416 #9ce8e7 models transparency 0
> color #416 #9ce8e73e models
> color #416 #9ce8e740 models
[Repeated 1 time(s)]
> color #416 #9ce8e73e models
> save /Users/shoichi/Desktop/PilNO-zoom.png supersample 2
> transparentBackground true
> color #416 #d0ebd43e models
> color #416 #d0ebd4 models transparency 0
> color #416 #c3ebdc models transparency 0
> color #416 #c5ebdb models transparency 0
> color #416 #d3e6eb models transparency 0
> color #416 #d3e6eb66 models
> color #371 #4a9ed266 models
> save /Users/shoichi/Desktop/PilNO-zoom.png supersample 2
> transparentBackground true
> view SIDE
[Repeated 1 time(s)]
> show #!356 models
> show #!356-373 models
> show #!377-391 models
> show #!415-418 models
> show #!393-410 models
> show #!10 models
> show #!8 models
> show #!16 models
> show #!19 models
> show #!26 models
> show #!32-36 models
> show #!42-47 models
> show #!54-59 models
> show #!73 models
> hide #!73 models
> show #!95-96 models
> show #!113-115 models
> show #!177-216 models
> hide #!95 models
> hide #!96 models
> show #!239-259 models
> show #!312-313 models
> show #!316 models
> show #!356-375 models
> hide #!356 models
> show #!356 models
> hide #!374 models
> hide #!375 models
> color #415 #d3e6eb66 models
> color #415-418 #d3e6eb66 models
> color #377-391 #d3e6eb66 models
> hide #!371 models
> show #!371 models
> color #356 #4a9ed266 models
> color #356-373 #4a9ed266 models
> close #413-414
> sym #411 C18 copies true center #8
> hide #!413 models
> show #!413 models
> close #413
> show #!411 models
> select add #411
5585 atoms, 5644 bonds, 336 residues, 1 model selected
> select add #412
11170 atoms, 11288 bonds, 672 residues, 4 models selected
> hide sel surfaces
> show sel cartoons
> sym #411 C18 copies true center #8
> sym #412 C18 copies true center #8
> select subtract #411
5585 atoms, 5644 bonds, 336 residues, 5 models selected
> select subtract #412
2 models selected
> select add #413
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> select add #414
201060 atoms, 203184 bonds, 12096 residues, 38 models selected
> hide sel cartoons
> show sel surfaces
> select subtract #414
100530 atoms, 101592 bonds, 6048 residues, 91 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #413.1/A:157 #413.2/A:157 #413.3/A:157 #413.4/A:157 #413.5/A:157
> #413.6/A:157 #413.7/A:157 #413.8/A:157 #413.9/A:157 #413.10/A:157
> #413.11/A:157 #413.12/A:157 #413.13/A:157 #413.14/A:157 #413.15/A:157
> #413.16/A:157 #413.17/A:157 #413.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #413.1/A:1-157 #413.2/A:1-157 #413.3/A:1-157 #413.4/A:1-157
> #413.5/A:1-157 #413.6/A:1-157 #413.7/A:1-157 #413.8/A:1-157 #413.9/A:1-157
> #413.10/A:1-157 #413.11/A:1-157 #413.12/A:1-157 #413.13/A:1-157
> #413.14/A:1-157 #413.15/A:1-157 #413.16/A:1-157 #413.17/A:1-157
> #413.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 560.765
> select #413.1/B:179 #413.2/B:179 #413.3/B:179 #413.4/B:179 #413.5/B:179
> #413.6/B:179 #413.7/B:179 #413.8/B:179 #413.9/B:179 #413.10/B:179
> #413.11/B:179 #413.12/B:179 #413.13/B:179 #413.14/B:179 #413.15/B:179
> #413.16/B:179 #413.17/B:179 #413.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #413.1/A:113-157 #413.2/A:113-157 #413.3/A:113-157 #413.4/A:113-157
> #413.5/A:113-157 #413.6/A:113-157 #413.7/A:113-157 #413.8/A:113-157
> #413.9/A:113-157 #413.10/A:113-157 #413.11/A:113-157 #413.12/A:113-157
> #413.13/A:113-157 #413.14/A:113-157 #413.15/A:113-157 #413.16/A:113-157
> #413.17/A:113-157 #413.18/A:113-157
13248 atoms, 13464 bonds, 810 residues, 18 models selected
> select #413.1/A:1-157 #413.2/A:1-157 #413.3/A:1-157 #413.4/A:1-157
> #413.5/A:1-157 #413.6/A:1-157 #413.7/A:1-157 #413.8/A:1-157 #413.9/A:1-157
> #413.10/A:1-157 #413.11/A:1-157 #413.12/A:1-157 #413.13/A:1-157
> #413.14/A:1-157 #413.15/A:1-157 #413.16/A:1-157 #413.17/A:1-157
> #413.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 560.765
> color (#!413.1-18 & sel) #d09bdaff
> color (#!413.1-18 & sel) #1a8ccbff
> select #413.1/B:179 #413.2/B:179 #413.3/B:179 #413.4/B:179 #413.5/B:179
> #413.6/B:179 #413.7/B:179 #413.8/B:179 #413.9/B:179 #413.10/B:179
> #413.11/B:179 #413.12/B:179 #413.13/B:179 #413.14/B:179 #413.15/B:179
> #413.16/B:179 #413.17/B:179 #413.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #413.1/B:1-179 #413.2/B:1-179 #413.3/B:1-179 #413.4/B:1-179
> #413.5/B:1-179 #413.6/B:1-179 #413.7/B:1-179 #413.8/B:1-179 #413.9/B:1-179
> #413.10/B:1-179 #413.11/B:1-179 #413.12/B:1-179 #413.13/B:1-179
> #413.14/B:1-179 #413.15/B:1-179 #413.16/B:1-179 #413.17/B:1-179
> #413.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 540.562
> color (#!413.1-18 & sel) #22daa1ff
> select add #414
154854 atoms, 156474 bonds, 9270 residues, 55 models selected
> select add #413
201060 atoms, 203184 bonds, 12096 residues, 92 models selected
> select add #413
201060 atoms, 203184 bonds, 12096 residues, 110 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #413.1/A:157 #413.2/A:157 #413.3/A:157 #413.4/A:157 #413.5/A:157
> #413.6/A:157 #413.7/A:157 #413.8/A:157 #413.9/A:157 #413.10/A:157
> #413.11/A:157 #413.12/A:157 #413.13/A:157 #413.14/A:157 #413.15/A:157
> #413.16/A:157 #413.17/A:157 #413.18/A:157 #414.1/A:157 #414.2/A:157
> #414.3/A:157 #414.4/A:157 #414.5/A:157 #414.6/A:157 #414.7/A:157
> #414.8/A:157 #414.9/A:157 #414.10/A:157 #414.11/A:157 #414.12/A:157
> #414.13/A:157 #414.14/A:157 #414.15/A:157 #414.16/A:157 #414.17/A:157
> #414.18/A:157
828 atoms, 792 bonds, 36 residues, 36 models selected
> select #413.1/A:1-157 #413.2/A:1-157 #413.3/A:1-157 #413.4/A:1-157
> #413.5/A:1-157 #413.6/A:1-157 #413.7/A:1-157 #413.8/A:1-157 #413.9/A:1-157
> #413.10/A:1-157 #413.11/A:1-157 #413.12/A:1-157 #413.13/A:1-157
> #413.14/A:1-157 #413.15/A:1-157 #413.16/A:1-157 #413.17/A:1-157
> #413.18/A:1-157 #414.1/A:1-157 #414.2/A:1-157 #414.3/A:1-157 #414.4/A:1-157
> #414.5/A:1-157 #414.6/A:1-157 #414.7/A:1-157 #414.8/A:1-157 #414.9/A:1-157
> #414.10/A:1-157 #414.11/A:1-157 #414.12/A:1-157 #414.13/A:1-157
> #414.14/A:1-157 #414.15/A:1-157 #414.16/A:1-157 #414.17/A:1-157
> #414.18/A:1-157
92412 atoms, 93420 bonds, 5652 residues, 36 models selected
1 [ID: 1] region 36 chains [1-157] RMSD: 559.604
> color (#!413.1-18#!414.1-18 & sel) #1a8ccbff
> select #413.1/B:179 #413.2/B:179 #413.3/B:179 #413.4/B:179 #413.5/B:179
> #413.6/B:179 #413.7/B:179 #413.8/B:179 #413.9/B:179 #413.10/B:179
> #413.11/B:179 #413.12/B:179 #413.13/B:179 #413.14/B:179 #413.15/B:179
> #413.16/B:179 #413.17/B:179 #413.18/B:179 #414.1/B:179 #414.2/B:179
> #414.3/B:179 #414.4/B:179 #414.5/B:179 #414.6/B:179 #414.7/B:179
> #414.8/B:179 #414.9/B:179 #414.10/B:179 #414.11/B:179 #414.12/B:179
> #414.13/B:179 #414.14/B:179 #414.15/B:179 #414.16/B:179 #414.17/B:179
> #414.18/B:179
648 atoms, 612 bonds, 36 residues, 36 models selected
> select #413.1/B:1-179 #413.2/B:1-179 #413.3/B:1-179 #413.4/B:1-179
> #413.5/B:1-179 #413.6/B:1-179 #413.7/B:1-179 #413.8/B:1-179 #413.9/B:1-179
> #413.10/B:1-179 #413.11/B:1-179 #413.12/B:1-179 #413.13/B:1-179
> #413.14/B:1-179 #413.15/B:1-179 #413.16/B:1-179 #413.17/B:1-179
> #413.18/B:1-179 #414.1/B:1-179 #414.2/B:1-179 #414.3/B:1-179 #414.4/B:1-179
> #414.5/B:1-179 #414.6/B:1-179 #414.7/B:1-179 #414.8/B:1-179 #414.9/B:1-179
> #414.10/B:1-179 #414.11/B:1-179 #414.12/B:1-179 #414.13/B:1-179
> #414.14/B:1-179 #414.15/B:1-179 #414.16/B:1-179 #414.17/B:1-179
> #414.18/B:1-179
108648 atoms, 109764 bonds, 6444 residues, 36 models selected
2 [ID: 2] region 36 chains [1-179] RMSD: 542.490
> color (#!413.1-18#!414.1-18 & sel) #22daa1ff
> select clear
> show #!282 models
> show #!281 models
> show #!281-288 models
> show #!281-298 models
> color #281 #929292 models transparency 0
> color #281-298 #929292 models transparency 0
> save /Users/shoichi/Desktop/Side-dock.png supersample 2
> transparentBackground true
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure7.cxs includeMaps true
> color #415 #d3e6eb99 models
> color #415-418 #d3e6eb99 models
> color #377-391 #d3e6eb99 models
> save /Users/shoichi/Desktop/Side-dock.png supersample 2
> transparentBackground true
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure7.cxs includeMaps true
——— End of log from Thu Feb 16 19:17:05 2023 ———
opened ChimeraX session
> hide #!316 models
> hide #!1-418 models
> show #!413 models
> show #!414 models
> show #!377 models
> hide #!377 models
> show #!95 models
> show #!96 models
> show #!73 models
> hide #!73 models
> show #!73 models
> color #73 #a9bfb9 models transparency 0
> color #73 #5dbf49 models transparency 0
> color #73 #2dbdbf models transparency 0
> color #73 #2fbf7c models transparency 0
> color #73 #b9bf2a models transparency 0
> color #73 #b3bf35 models transparency 0
> color #73 #bfbe13 models transparency 0
> color #73 #bab912 models transparency 0
> color #95 #bf6311 models transparency 0
> color #95 #bf5712 models transparency 0
> color #95 #bf6142 models transparency 0
> color #95 #d76d4b models transparency 0
> color #95 #e0724e models transparency 0
> color #96 #9f77b0 models transparency 0
> show #!8 models
> show #!10 models
> show #!16 models
> show #!19 models
> show #!26 models
> show #!32-36 models
> hide #!32-36 models
> hide #!26 models
> show #!113-115 models
> show #!177-216 models
> show #!239-259 models
> show #!312 models
> show #!313 models
> color #313 #dbdbdb4d models
> show #!316 models
> show #!377 models
> show #!377-391 models
> show #!393-410 models
> show #!413-418 models
> color height #413 axis 0,0,1 update true coordinateSystem #413 palette
> blues-5
> select add #413
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> select #413.1/A:157 #413.2/A:157 #413.3/A:157 #413.4/A:157 #413.5/A:157
> #413.6/A:157 #413.7/A:157 #413.8/A:157 #413.9/A:157 #413.10/A:157
> #413.11/A:157 #413.12/A:157 #413.13/A:157 #413.14/A:157 #413.15/A:157
> #413.16/A:157 #413.17/A:157 #413.18/A:157 #414.1/A:157 #414.2/A:157
> #414.3/A:157 #414.4/A:157 #414.5/A:157 #414.6/A:157 #414.7/A:157
> #414.8/A:157 #414.9/A:157 #414.10/A:157 #414.11/A:157 #414.12/A:157
> #414.13/A:157 #414.14/A:157 #414.15/A:157 #414.16/A:157 #414.17/A:157
> #414.18/A:157
828 atoms, 792 bonds, 36 residues, 36 models selected
> select #413.1/A:1-157 #413.2/A:1-157 #413.3/A:1-157 #413.4/A:1-157
> #413.5/A:1-157 #413.6/A:1-157 #413.7/A:1-157 #413.8/A:1-157 #413.9/A:1-157
> #413.10/A:1-157 #413.11/A:1-157 #413.12/A:1-157 #413.13/A:1-157
> #413.14/A:1-157 #413.15/A:1-157 #413.16/A:1-157 #413.17/A:1-157
> #413.18/A:1-157 #414.1/A:1-157 #414.2/A:1-157 #414.3/A:1-157 #414.4/A:1-157
> #414.5/A:1-157 #414.6/A:1-157 #414.7/A:1-157 #414.8/A:1-157 #414.9/A:1-157
> #414.10/A:1-157 #414.11/A:1-157 #414.12/A:1-157 #414.13/A:1-157
> #414.14/A:1-157 #414.15/A:1-157 #414.16/A:1-157 #414.17/A:1-157
> #414.18/A:1-157
92412 atoms, 93420 bonds, 5652 residues, 36 models selected
1 [ID: 1] region 36 chains [1-157] RMSD: 559.604
> color (#!413.1-18#!414.1-18 & sel) #1a8ccbff
> color (#!413.1-18#!414.1-18 & sel) #22daa1ff
> color (#!413.1-18#!414.1-18 & sel) #1a8ccbff
> select #413.1/B:179 #413.2/B:179 #413.3/B:179 #413.4/B:179 #413.5/B:179
> #413.6/B:179 #413.7/B:179 #413.8/B:179 #413.9/B:179 #413.10/B:179
> #413.11/B:179 #413.12/B:179 #413.13/B:179 #413.14/B:179 #413.15/B:179
> #413.16/B:179 #413.17/B:179 #413.18/B:179 #414.1/B:179 #414.2/B:179
> #414.3/B:179 #414.4/B:179 #414.5/B:179 #414.6/B:179 #414.7/B:179
> #414.8/B:179 #414.9/B:179 #414.10/B:179 #414.11/B:179 #414.12/B:179
> #414.13/B:179 #414.14/B:179 #414.15/B:179 #414.16/B:179 #414.17/B:179
> #414.18/B:179
648 atoms, 612 bonds, 36 residues, 36 models selected
> select #413.1/B:1-179 #413.2/B:1-179 #413.3/B:1-179 #413.4/B:1-179
> #413.5/B:1-179 #413.6/B:1-179 #413.7/B:1-179 #413.8/B:1-179 #413.9/B:1-179
> #413.10/B:1-179 #413.11/B:1-179 #413.12/B:1-179 #413.13/B:1-179
> #413.14/B:1-179 #413.15/B:1-179 #413.16/B:1-179 #413.17/B:1-179
> #413.18/B:1-179 #414.1/B:1-179 #414.2/B:1-179 #414.3/B:1-179 #414.4/B:1-179
> #414.5/B:1-179 #414.6/B:1-179 #414.7/B:1-179 #414.8/B:1-179 #414.9/B:1-179
> #414.10/B:1-179 #414.11/B:1-179 #414.12/B:1-179 #414.13/B:1-179
> #414.14/B:1-179 #414.15/B:1-179 #414.16/B:1-179 #414.17/B:1-179
> #414.18/B:1-179
108648 atoms, 109764 bonds, 6444 residues, 36 models selected
2 [ID: 2] region 36 chains [1-179] RMSD: 542.490
> color (#!413.1-18#!414.1-18 & sel) #22daa1ff
> select add #413
154854 atoms, 156474 bonds, 9270 residues, 73 models selected
> select subtract #413
54324 atoms, 54882 bonds, 3222 residues, 54 models selected
> select add #414
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select add #414
100530 atoms, 101592 bonds, 6048 residues, 55 models selected
> select subtract #414
36 models selected
> color height #415 axis 0,0,1 update true coordinateSystem #415 palette
> blues-5
> show #!374 models
> hide #!413 models
> hide #!414 models
> show #!375 models
> color #415 #d3e6eba4 models
> color #415 #d3e6eb90 models
> hide #!95 models
> hide #!73 models
> hide #!96 models
> show #!26 models
> show #!32-36 models
> show #!42-47 models
> show #!54-59 models
> show #!281-298 models
> view SIDE
> show #!356-373 models
> save /Users/shoichi/Desktop/PilNO_Dock.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-Karen/For-Figure/For-PilNO_figure9.cxs" includeMaps true
> hide #!281 models
> hide #!281-298 models
> hide #!356-373 models
> hide #!26 models
> hide #!26-59 models
> show #!95 models
> show #!96 models
> show #!73 models
> color height #415 axis 0,0,1 update true coordinateSystem #415 palette
> blues-5
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/PilM-
> predictions-Oct12-2022/PilM-ranked_0.pdb
Chain information for PilM-ranked_0.pdb #419
---
Chain | Description
A | No description available
> ui mousemode right zoom
> select add #419
5131 atoms, 5180 bonds, 310 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #419,1,0,0,1.8288e-06,0,1,0,722.51,0,0,1,351.54
> view matrix models #419,1,0,0,1.5503e-06,0,1,0,613.24,0,0,1,352.86
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #419,1,0,0,193.01,0,1,0,463.31,0,0,1,314.51
> view matrix models #419,1,0,0,167.67,0,1,0,510.82,0,0,1,322.9
> view matrix models #419,1,0,0,160.62,0,1,0,542.26,0,0,1,327.42
> hide #!374 models
> hide #!375 models
> hide #!95 models
> hide #!96 models
> hide #!73 models
> view matrix models #419,1,0,0,155.31,0,1,0,565.71,0,0,1,331.41
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #419,0.97455,0.22075,0.038971,156.74,-0.15207,0.52331,0.83846,565.23,0.1647,-0.82305,0.54356,325.23
> view matrix models
> #419,0.9875,-0.061605,0.14506,155.4,-0.10413,0.43581,0.89399,565.02,-0.11829,-0.89793,0.42395,323.57
> view matrix models
> #419,0.97443,-0.13659,0.17841,155.01,-0.10465,0.42675,0.89829,564.97,-0.19884,-0.89399,0.40155,323.29
> view matrix models
> #419,0.97286,-0.082088,0.21634,155.48,-0.20918,0.087693,0.97394,562.85,-0.09892,-0.99276,0.068142,321.81
> ui mousemode right "translate selected models"
> view matrix models
> #419,0.97286,-0.082088,0.21634,154.2,-0.20918,0.087693,0.97394,570.6,-0.09892,-0.99276,0.068142,324.29
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #419,0.97286,-0.082088,0.21634,164.83,-0.20918,0.087693,0.97394,571.07,-0.09892,-0.99276,0.068142,320.51
> ui tool show "Fit in Map"
> fitmap #419 inMap #416
Fit molecule PilM-ranked_0.pdb (#419) to map PilM-region.mrc gaussian copy
(#416) using 5131 atoms
average map value = 0.03138, steps = 92
shifted from previous position = 13.3
rotated from previous position = 49.1 degrees
atoms outside contour = 437, contour level = 0.0038
Position of PilM-ranked_0.pdb (#419) relative to PilM-region.mrc gaussian copy
(#416) coordinates:
Matrix rotation and translation
-0.45506044 0.37000073 -0.80995040 380.71893906
0.72251041 -0.37823678 -0.57871913 295.47133640
-0.52047948 -0.84854970 -0.09520878 214.04177246
Axis -0.50914597 -0.54620555 0.66515402
Axis point 254.10636236 263.23571092 0.00000000
Rotation angle (degrees) 164.63402847
Shift along axis -212.85885442
> fitmap #419 inMap #416
Fit molecule PilM-ranked_0.pdb (#419) to map PilM-region.mrc gaussian copy
(#416) using 5131 atoms
average map value = 0.03138, steps = 28
shifted from previous position = 0.0934
rotated from previous position = 0.0949 degrees
atoms outside contour = 436, contour level = 0.0038
Position of PilM-ranked_0.pdb (#419) relative to PilM-region.mrc gaussian copy
(#416) coordinates:
Matrix rotation and translation
-0.45432647 0.37123981 -0.80979544 380.79586807
0.72207829 -0.37890831 -0.57881917 295.45728660
-0.52171889 -0.84770849 -0.09591613 214.09392410
Axis -0.50963204 -0.54599804 0.66495213
Axis point 254.35204376 263.11352067 0.00000000
Rotation angle (degrees) 164.70390516
Shift along axis -213.02266110
> fitmap #419 inMap #416
Fit molecule PilM-ranked_0.pdb (#419) to map PilM-region.mrc gaussian copy
(#416) using 5131 atoms
average map value = 0.03138, steps = 28
shifted from previous position = 0.106
rotated from previous position = 0.13 degrees
atoms outside contour = 439, contour level = 0.0038
Position of PilM-ranked_0.pdb (#419) relative to PilM-region.mrc gaussian copy
(#416) coordinates:
Matrix rotation and translation
-0.45569788 0.36974360 -0.80970940 380.70736218
0.72238462 -0.37788249 -0.57910748 295.47853436
-0.52009624 -0.84881958 -0.09489683 214.03733863
Axis -0.50882185 -0.54636593 0.66527032
Axis point 254.02906341 263.25973796 0.00000000
Rotation angle (degrees) 164.63091562
Shift along axis -212.75893969
> ui mousemode right "translate selected models"
> view matrix models
> #419,0.47034,-0.39258,0.79036,172.65,-0.70672,0.36882,0.60376,569.22,-0.52852,-0.84253,-0.10397,329.01
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/PilM-
> predictions-Oct12-2022/PilM-ranked_0.pdb
Chain information for PilM-ranked_0.pdb #420
---
Chain | Description
A | No description available
> ui mousemode right zoom
> select add #420
10262 atoms, 10360 bonds, 620 residues, 2 models selected
> select subtract #419
5131 atoms, 5180 bonds, 310 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #420,1,0,0,121.76,0,1,0,594.06,0,0,1,-9.6312
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #420,1,0,0,204.81,0,1,0,618.58,0,0,1,259
> view matrix models #420,1,0,0,166.05,0,1,0,509.97,0,0,1,257.99
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #420,0.57329,-0.4751,0.66755,164.23,-0.38993,0.55836,0.73225,508.68,-0.72062,-0.68009,0.13485,248.83
> ui mousemode right "translate selected models"
> view matrix models
> #420,0.57329,-0.4751,0.66755,157.71,-0.38993,0.55836,0.73225,512.77,-0.72062,-0.68009,0.13485,317.06
> ui mousemode right "rotate selected models"
> view matrix models
> #420,0.563,-0.46282,0.68471,157.82,-0.56728,0.38608,0.72741,511.2,-0.60102,-0.79796,-0.04519,316.05
> ui mousemode right "translate selected models"
> view matrix models
> #420,0.563,-0.46282,0.68471,170.63,-0.56728,0.38608,0.72741,508.87,-0.60102,-0.79796,-0.04519,313.75
> ui mousemode right "rotate selected models"
> view matrix models
> #420,0.60327,-0.50154,0.62009,170.28,-0.50744,0.35845,0.78359,509.06,-0.61528,-0.78738,-0.038264,313.8
> fitmap #420 inMap #416
Fit molecule PilM-ranked_0.pdb (#420) to map PilM-region.mrc gaussian copy
(#416) using 5131 atoms
average map value = 0.02604, steps = 76
shifted from previous position = 3.71
rotated from previous position = 25.6 degrees
atoms outside contour = 459, contour level = 0.0038
Position of PilM-ranked_0.pdb (#420) relative to PilM-region.mrc gaussian copy
(#416) coordinates:
Matrix rotation and translation
-0.73166273 0.45810717 -0.50478458 382.92538530
0.16786291 -0.59662680 -0.78476653 354.74263542
-0.66067518 -0.65891902 0.35963039 199.35595172
Axis 0.35683482 0.44202064 -0.82297428
Axis point 250.74732800 212.72675863 0.00000000
Rotation angle (degrees) 169.84343430
Shift along axis 129.37985677
> fitmap #420 inMap #416
Fit molecule PilM-ranked_0.pdb (#420) to map PilM-region.mrc gaussian copy
(#416) using 5131 atoms
average map value = 0.02604, steps = 40
shifted from previous position = 0.0785
rotated from previous position = 0.166 degrees
atoms outside contour = 459, contour level = 0.0038
Position of PilM-ranked_0.pdb (#420) relative to PilM-region.mrc gaussian copy
(#416) coordinates:
Matrix rotation and translation
-0.73183572 0.46010381 -0.50271359 383.00317381
0.16555120 -0.59554903 -0.78607515 354.71957575
-0.66106677 -0.65850271 0.35967332 199.32947485
Axis 0.35642032 0.44241759 -0.82294060
Axis point 250.97098883 212.47592452 0.00000000
Rotation angle (degrees) 169.69060907
Shift along axis 129.40797923
> view matrix models
> #420,0.71815,-0.54051,0.4383,173.21,-0.10301,0.54033,0.83513,509.77,-0.68822,-0.6449,0.33235,313.23
> fitmap #420 inMap #416
Fit molecule PilM-ranked_0.pdb (#420) to map PilM-region.mrc gaussian copy
(#416) using 5131 atoms
average map value = 0.02604, steps = 40
shifted from previous position = 0.398
rotated from previous position = 4.02 degrees
atoms outside contour = 459, contour level = 0.0038
Position of PilM-ranked_0.pdb (#420) relative to PilM-region.mrc gaussian copy
(#416) coordinates:
Matrix rotation and translation
-0.73152683 0.46164713 -0.50174737 382.99722614
0.16439204 -0.59476747 -0.78690972 354.72055877
-0.66169763 -0.65812885 0.35919725 199.34698183
Axis 0.35644913 0.44272203 -0.82276438
Axis point 251.13821718 212.35246278 0.00000000
Rotation angle (degrees) 169.59272014
Shift along axis 129.54603592
> view matrix models
> #420,0.73754,-0.57091,0.3607,172.83,-0.31746,0.17832,0.93136,507.27,-0.59604,-0.80141,-0.049724,311.23
> view matrix models
> #420,0.7768,-0.56724,0.27353,172.66,-0.37552,-0.06855,0.92428,505.57,-0.50554,-0.82069,-0.26626,310.61
> ui mousemode right "translate selected models"
> view matrix models
> #420,0.7768,-0.56724,0.27353,171.86,-0.37552,-0.06855,0.92428,510.55,-0.50554,-0.82069,-0.26626,320.65
> ui mousemode right "rotate selected models"
> view matrix models
> #420,0.77667,-0.56817,0.27195,171.85,-0.36845,-0.059598,0.92774,510.64,-0.51091,-0.82075,-0.25563,320.67
> ui mousemode right zoom
> show #!374 models
> show #!375 models
> ui mousemode right "rotate selected models"
> view matrix models
> #420,0.8915,-0.27632,0.35899,174.26,-0.36147,0.043784,0.93135,511.31,-0.27307,-0.96007,-0.06085,321.14
> view matrix models
> #420,0.91729,-0.17329,0.35853,174.97,-0.3523,0.066536,0.93352,511.48,-0.18562,-0.98262,-1.6155e-05,321.45
> select add #419
10262 atoms, 10360 bonds, 620 residues, 2 models selected
> select subtract #419
5131 atoms, 5180 bonds, 310 residues, 1 model selected
> select subtract #420
Nothing selected
> select add #419
5131 atoms, 5180 bonds, 310 residues, 1 model selected
> view matrix models
> #419,0.44026,-0.41629,0.79554,172.44,-0.71475,0.37376,0.59113,569.19,-0.54342,-0.82886,-0.13299,328.95
> view matrix models
> #419,0.44393,-0.41854,0.7923,172.43,-0.7326,0.33962,0.58988,568.92,-0.51597,-0.84231,-0.15586,328.87
> view matrix models
> #419,0.54619,-0.10421,0.83115,174.78,-0.78494,0.28277,0.55128,568.29,-0.29247,-0.95351,0.072654,329.59
> view matrix models
> #419,0.57219,0.0052648,0.8201,175.49,-0.78966,0.27355,0.54919,568.22,-0.22145,-0.96184,0.16068,330.03
> ui mousemode right "translate selected models"
> view matrix models
> #419,0.57219,0.0052648,0.8201,169.49,-0.78966,0.27355,0.54919,568.97,-0.22145,-0.96184,0.16068,331.51
> view matrix models
> #419,0.57219,0.0052648,0.8201,170.25,-0.78966,0.27355,0.54919,568.32,-0.22145,-0.96184,0.16068,331.18
> ui mousemode right zoom
> sym #420 C18 copies true center #8
> sym #419 C18 copies true center #8
> view SIDE
> select subtract #419
Nothing selected
> select add #419
5131 atoms, 5180 bonds, 310 residues, 1 model selected
> select subtract #419
Nothing selected
> select add #421
92358 atoms, 93240 bonds, 5580 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
> select add #422
184716 atoms, 186480 bonds, 11160 residues, 56 models selected
> select subtract #421
92358 atoms, 93240 bonds, 5580 residues, 37 models selected
> hide sel cartoons
> show sel surfaces
> select subtract #422
18 models selected
> color height #421 axis 0,0,1 update true coordinateSystem #421 palette
> blues-5
> color height #422 axis 0,0,1 update true coordinateSystem #422 palette
> blues-5
> color height #422 axis 0,0,1 update true coordinateSystem #422 palette
> blues-3
> color height #422 axis 0,0,1 update true coordinateSystem #422 palette
> blues-3
> color height #421 axis 0,0,1 update true coordinateSystem #421 palette
> blues-3
> hide #!415 models
> hide #!416 models
> close #421-422
> show #420 models
> show #419 models
> select add #419
5131 atoms, 5180 bonds, 310 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #419,0.57351,0.0063281,0.81918,170.26,-0.77899,0.31366,0.54295,568.58,-0.2535,-0.94952,0.18481,331.25
> show #!416 models
> ui mousemode right "translate selected models"
> view matrix models
> #419,0.57351,0.0063281,0.81918,170.36,-0.77899,0.31366,0.54295,571.28,-0.2535,-0.94952,0.18481,331.45
> ui mousemode right "rotate selected models"
> view matrix models
> #419,0.66296,-0.025447,0.74822,170.16,-0.69921,0.33616,0.63096,571.94,-0.26758,-0.94146,0.20506,331.53
> view matrix models
> #419,0.93337,-0.1871,0.3063,168.4,-0.23487,0.32692,0.9154,574.15,-0.27141,-0.92634,0.26119,331.81
> view matrix models
> #419,0.9341,-0.18772,0.30368,168.39,-0.2287,0.33852,0.91274,574.23,-0.27414,-0.92204,0.27328,331.87
> view matrix models
> #419,0.92339,-0.1824,0.33777,168.51,-0.30528,0.18453,0.93421,573.14,-0.23273,-0.96575,0.11471,331.17
> ui mousemode right zoom
> select subtract #419
Nothing selected
> select add #419
5131 atoms, 5180 bonds, 310 residues, 1 model selected
> sym #420 C18 copies true center #8
[Repeated 1 time(s)]
> hide #!422 models
> show #!422 models
> close #422
> sym #419 C18 copies true center #8
> select add #421
97489 atoms, 98420 bonds, 5890 residues, 20 models selected
> select add #422
189847 atoms, 191660 bonds, 11470 residues, 39 models selected
> select subtract #419
184716 atoms, 186480 bonds, 11160 residues, 38 models selected
> hide sel cartoons
> show sel surfaces
> color height #422 axis 0,0,1 update true coordinateSystem #422 palette
> blues-3
> select up
184716 atoms, 186480 bonds, 11160 residues, 74 models selected
> color height #421 axis 0,0,1 update true coordinateSystem #422 palette
> blues-3
> select clear
> hide #!416 models
> hide #!417-418 models
> hide #!377-391 models
> view SIDE
> save /Users/shoichi/Desktop/Docking-model-full1.png supersample 2
> transparentBackground true
> ui tool show "Side View"
> show #!73 models
> show #94 models
> hide #94 models
> show #!95 models
> show #!96 models
> save /Users/shoichi/Desktop/Docking-model-full1.png supersample 2
> transparentBackground true
> hide #!374 models
> hide #!375 models
> show #25 models
> hide #25 models
> show #!374 models
> show #!375 models
> hide #!406 models
> show #!406 models
> view SIDE
> turn x 90
[Repeated 2 time(s)]
> hide #!313 models
> save /Users/shoichi/Desktop/Docking-model-full2.png supersample 2
> transparentBackground true
> turn x 90
[Repeated 1 time(s)]
> hide #!393-410 models
> save /Users/shoichi/Desktop/Docking-model-full3.png supersample 2
> transparentBackground true
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure10.cxs includeMaps true
——— End of log from Fri Feb 17 13:21:43 2023 ———
opened ChimeraX session
> hide #!421-422 models
> hide #!374-375 models
> hide #!95-96 models
> hide #!73 models
> hide #!176-216 models
> hide #!239-259 models
> turn x 90
[Repeated 2 time(s)]
> ui tool show "Side View"
> show #!1 models
> hide #!1 models
> show #!26 models
> show #!32-36 models
> show #!42-47 models
> show #!54-59 models
> show #!281-298 models
> show #!336 models
> hide #!336 models
> show #!356 models
> hide #!356 models
> show #!355 models
> hide #!355 models
> show #!356-373 models
> color #356 #4a9ed2 models transparency 0
> color #356-373 #4a9ed2 models transparency 0
> show #!393-410 models
> show #!415 models
> hide #!415 models
> show #!377-391 models
> show #!415-418 models
> color #377 #6f2071 models transparency 0
> color #377 #d3e6eb99 models
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-5
> color height #379 axis 0,0,1 update true coordinateSystem #379 palette
> blues-5
> color height #380 axis 0,0,1 update true coordinateSystem #380 palette
> blues-5
> color height #381 axis 0,0,1 update true coordinateSystem #381 palette
> blues-5
> color height #382 axis 0,0,1 update true coordinateSystem #382 palette
> blues-5
> color height #383 axis 0,0,1 update true coordinateSystem #383 palette
> blues-5
> color height #384 axis 0,0,1 update true coordinateSystem #384 palette
> blues-5
> color height #385 axis 0,0,1 update true coordinateSystem #385 palette
> blues-5
> color height #386 axis 0,0,1 update true coordinateSystem #386 palette
> blues-5
> color height #387 axis 0,0,1 update true coordinateSystem #387 palette
> blues-5
> color height #388 axis 0,0,1 update true coordinateSystem #388 palette
> blues-5
> color height #389 axis 0,0,1 update true coordinateSystem #389 palette
> blues-5
> color height #390 axis 0,0,1 update true coordinateSystem #390 palette
> blues-5
> color height #391 axis 0,0,1 update true coordinateSystem #391 palette
> blues-5
> color height #415 axis 0,0,1 update true coordinateSystem #415 palette
> blues-5
> color height #416 axis 0,0,1 update true coordinateSystem #416 palette
> blues-5
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-5
> color height #418 axis 0,0,1 update true coordinateSystem #418 palette
> blues-5
> show #!313 models
> color #316 #4796c8 models transparency 0
> color #316 #dbdbdb66 models
> color #313 #77b9e8 models transparency 0
> color #313 #dbdbdb4d models
> color #406 #aeaeae models transparency 0
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> color #406 #9dab9e models transparency 0
> color #406 #89ab74 models transparency 0
> color #406 #a499ab models transparency 0
> color #406 #ab968c models transparency 0
> color #406 #61ab89 models transparency 0
> color #406 #82ab94 models transparency 0
> color #406 #71ab97 models transparency 0
> color #406 #71ab98 models transparency 0
> color #406 #69ab92 models transparency 0
> color #406 #5aab98 models transparency 0
> color #406 #5cab98 models transparency 0
> color #406 #ab6c64 models transparency 0
> color #406 #ab8a5d models transparency 0
> color #406 #ab8f57 models transparency 0
> color #406 #ab8023 models transparency 0
> color #406 #ab8946 models transparency 0
> color #406 #ab944a models transparency 0
> color #406 #ab804b models transparency 0
> color #406 #ab7f46 models transparency 0
> color #406 #916c3b models transparency 0
> color #406 #9b743f models transparency 0
> color #406 #f4b664 models transparency 0
> color #406 #a77d44 models transparency 0
> color #406 #a57b43 models transparency 0
> color #406 #a57494 models transparency 0
> color #406 #a58198 models transparency 0
> color #406 #a58199 models transparency 0
> color #406 #5a7fa5 models transparency 0
> color #406 #5b80a5 models transparency 0
> color #406 #696da5 models transparency 0
> color #406 #5253a5 models transparency 0
> color #406 #d6d6d6 models transparency 0
> color #406 silver models transparency 0
> color #406 darkgrey models transparency 0
> color #406 silver models transparency 0
> color #406 #d6d6d6 models transparency 0
> color #406 #ebebeb models transparency 0
> color #406 white models transparency 0
> color #406 #eceded models transparency 0
> color #406 #cab9ed models transparency 0
> color #406 #dac7ed models transparency 0
> color #406 #d9b4ed models transparency 0
> color #406 #dab4ed models transparency 0
> color #406 #d8aded models transparency 0
> color #406 #edadde models transparency 0
> color #406 #e19fed models transparency 0
> color #406 #dea7ed models transparency 0
> color #406 #b88ac5 models transparency 0
> color #406 #b88ac4 models transparency 0
> color #406 #b789c3 models transparency 0
> color #406 #b47dc3 models transparency 0
> color #406 #c176c3 models transparency 0
> color #406 #c185c3 models transparency 0
[Repeated 1 time(s)]
> color #406 #c33432 models transparency 0
> color #406 #c32011 models transparency 0
> color #406 #97190d models transparency 0
> color #406 #91180c models transparency 0
> color #406 #913101 models transparency 0
> color #406 #913201 models transparency 0
> color #406 #913301 models transparency 0
> color #406 #915c22 models transparency 0
> color #406 #9f6525 models transparency 0
> color #406 #9f4c25 models transparency 0
> color #406 #9f481a models transparency 0
> color #406 #9b4619 models transparency 0
> color #406 #a54a1a models transparency 0
> color #406 #a55935 models transparency 0
> color #406 #a5684e models transparency 0
> color #406 #a57053 models transparency 0
> color #406 #a56548 models transparency 0
> color #406 #b66f4f models transparency 0
> color #406 #b56f4f models transparency 0
> color #393-410 #b56f4f models transparency 0
> color #406 #a06246 models transparency 0
> color #406 #a05437 models transparency 0
> color #406 #a05337 models transparency 0
> color #393-410406 #a05337 models transparency 0
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword
> color #393-410 #a05337 models transparency 0
> hide #!45 models
> hide #!46 models
> hide #!47 models
> hide #!44 models
> hide #!43 models
> hide #!42 models
> show #!73 models
> hide #!73 models
> show #!42 models
> show #!43 models
> show #!44 models
> show #!45 models
> show #!46 models
> show #!47 models
> color #406 #a7745a models transparency 0
> color #406 #a76d51 models transparency 0
> color #406 #a76f54 models transparency 0
> color #393-410 #a05337 models transparency 0
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-Karen/For-Figure/For-PilNO_figure11.cxs" includeMaps true
> color #406 #afa549 models transparency 0
> color #406 #afaa78 models transparency 0
> color #406 #af8e2e models transparency 0
> color #406 #af9e33 models transparency 0
> color #406 #af992b models transparency 0
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> color #406 #bea660 models transparency 0
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> color #406 #d0b565 models transparency 0
> color #406 #ab9452 models transparency 0
> color #406 #ac9553 models transparency 0
> color #393-410 #ac9553 models transparency 0
> hide #!8 models
> hide #!8-418 models
> show #!1 models
> show #!9 models
> hide #!9 models
> volume #!1 showOutlineBox true
> ui mousemode right "crop volume"
> volume #1 region 0,123,0,249,249,176
> volume #1 region 0,0,0,249,249,176
> volume #!1 showOutlineBox false
> show #!9 models
> view SIDE
> color #1 #929292 models transparency 0
> color #9 #929292 models transparency 0
> show #!8 models
> show #!10 models
> show #!16 models
> show #!19 models
> show #!26 models
> show #!32-36 models
> show #!42-47 models
> show #!54-59 models
> show #!113 models
> show #!114-115 models
> show #!281-298 models
> show #!356-373 models
> show #!393-410 models
> show #!377-391 models
> show #!415-418 models
> show #!313 models
> show #!316 models
> show #!312 models
> color #393 #bf79e1 models transparency 0
> color #400 #af5db7 models transparency 0
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> color #405 #b783b3 models transparency 0
> color #405 #8b61b7 models transparency 0
> color #405 #8c6ab7 models transparency 0
> color #405 #8d6ab7 models transparency 0
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> color #405 #a275b7 models transparency 0
> color #405 #a283b7 models transparency 0
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> color #405 #b71e94 models transparency 0
> color #405 #b76ca1 models transparency 0
> color #405 #b76cb4 models transparency 0
> color #405 #e084dc models transparency 0
> color #405 #aa65a8 models transparency 0
> color #405 #a773aa models transparency 0
> color #405 #a471aa models transparency 0
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> color #405 #9971aa models transparency 0
> color #405 #b284c7 models transparency 0
> color #405 #af81c2 models transparency 0
> color #405 #b284c7 models transparency 0
[Repeated 1 time(s)]
> color #405 #b693c7 models transparency 0
> color #405 #c478c7 models transparency 0
> color #405 #c684c7 models transparency 0
> color #405 #be7ac7 models transparency 0
> color #405 #b574bd models transparency 0
> color #405 #aa6db1 models transparency 0
> color #405 #98629f models transparency 0
> color #405 #ab6eb3 models transparency 0
> color #405 #a164b3 models transparency 0
> color #405 #a260b3 models transparency 0
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> color #405 #8d539c models transparency 0
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> color #405 #9356a2 models transparency 0
> color #405 #9457a3 models transparency 0
> color #405 #9658a5 models transparency 0
> color #405 #9759a7 models transparency 0
> color #393-410 #9759a7 models transparency 0
> color #405 #9f77a7 models transparency 0
> color #405 #a375a7 models transparency 0
> color #405 #a770a5 models transparency 0
> color #405 #b97cb7 models transparency 0
> color #405 #b87bb6 models transparency 0
> color #393-410 #b87bb6 models transparency 0
> color #405 #b890b5 models transparency 0
> color #405 #b68ab8 models transparency 0
> color #405 #b790b8 models transparency 0
> color #393-410 #b790b8 models transparency 0
> save /Users/shoichi/Desktop/Hp-side.png supersample 2 transparentBackground
> true
> color #356 #4a9ed266 models
> color #356-410 #4a9ed266 models
> color #356-373 #4a9ed266 models
> color #393-410 #b87bb6 models transparency 0
> color #393-410 #b790b8 models transparency 0
> color #377-391 #d3e6eb99 models
> color #415-418 #d3e6eb99 models
> show #!411 models
> hide #!411 models
> show #!413 models
> show #!414 models
> save /Users/shoichi/Desktop/Hp-side2.png supersample 2 transparentBackground
> true
> show #!411 models
> hide #!411 models
> hide #!413 models
> hide #!414 models
> show #!411 models
> hide #!411 models
> show #!411 models
> hide #!411 models
> show #!413 models
> show #!414 models
> hide #!414 models
> hide #!413 models
> show #!374 models
> show #!375 models
> color #374 #22daa1 models transparency 0
> color #375 #22daa1 models transparency 0
> turn x 90
[Repeated 7 time(s)]
> show #!414 models
> hide #!414 models
> show #!413 models
> hide #!413 models
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
> select subtract #374
Nothing selected
Alignment identifier is 1
Alignment identifier is 2
Alignment identifier is 3
Alignment identifier is 4
Alignment identifier is 5
Alignment identifier is 6
Alignment identifier is 7
Alignment identifier is 8
Alignment identifier is 9
Alignment identifier is 10
Alignment identifier is 11
Alignment identifier is 12
Alignment identifier is 13
Alignment identifier is 14
Alignment identifier is 15
Alignment identifier is 16
Alignment identifier is 17
Alignment identifier is 18
Alignment identifier is 89/De
Alignment identifier is 19
Alignment identifier is 20
Alignment identifier is 21
Alignment identifier is 22
Alignment identifier is 23
Alignment identifier is 24
Alignment identifier is 25
Alignment identifier is 300/B
Alignment identifier is 300/C
Alignment identifier is 301/A
Alignment identifier is 302/A
Alignment identifier is 303/C
Alignment identifier is 303/D
Alignment identifier is 26
Alignment identifier is 27
Alignment identifier is 28
Alignment identifier is 29
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #374.1/A:157 #374.2/A:157 #374.3/A:157 #374.4/A:157 #374.5/A:157
> #374.6/A:157 #374.7/A:157 #374.8/A:157 #374.9/A:157 #374.10/A:157
> #374.11/A:157 #374.12/A:157 #374.13/A:157 #374.14/A:157 #374.15/A:157
> #374.16/A:157 #374.17/A:157 #374.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #374.1/A:1-157 #374.2/A:1-157 #374.3/A:1-157 #374.4/A:1-157
> #374.5/A:1-157 #374.6/A:1-157 #374.7/A:1-157 #374.8/A:1-157 #374.9/A:1-157
> #374.10/A:1-157 #374.11/A:1-157 #374.12/A:1-157 #374.13/A:1-157
> #374.14/A:1-157 #374.15/A:1-157 #374.16/A:1-157 #374.17/A:1-157
> #374.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 560.558
> color (#!374.1-18 & sel) #1a8ccbff
> select #374.1/B:179 #374.2/B:179 #374.3/B:179 #374.4/B:179 #374.5/B:179
> #374.6/B:179 #374.7/B:179 #374.8/B:179 #374.9/B:179 #374.10/B:179
> #374.11/B:179 #374.12/B:179 #374.13/B:179 #374.14/B:179 #374.15/B:179
> #374.16/B:179 #374.17/B:179 #374.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #374.1/B:1-179 #374.2/B:1-179 #374.3/B:1-179 #374.4/B:1-179
> #374.5/B:1-179 #374.6/B:1-179 #374.7/B:1-179 #374.8/B:1-179 #374.9/B:1-179
> #374.10/B:1-179 #374.11/B:1-179 #374.12/B:1-179 #374.13/B:1-179
> #374.14/B:1-179 #374.15/B:1-179 #374.16/B:1-179 #374.17/B:1-179
> #374.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.853
> color (#!374.1-18 & sel) #22daa1ff
> select add #374
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #374
36 models selected
> select add #375
100530 atoms, 101592 bonds, 6048 residues, 19 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #375.1/A:157 #375.2/A:157 #375.3/A:157 #375.4/A:157 #375.5/A:157
> #375.6/A:157 #375.7/A:157 #375.8/A:157 #375.9/A:157 #375.10/A:157
> #375.11/A:157 #375.12/A:157 #375.13/A:157 #375.14/A:157 #375.15/A:157
> #375.16/A:157 #375.17/A:157 #375.18/A:157
414 atoms, 396 bonds, 18 residues, 18 models selected
> select #375.1/A:1-157 #375.2/A:1-157 #375.3/A:1-157 #375.4/A:1-157
> #375.5/A:1-157 #375.6/A:1-157 #375.7/A:1-157 #375.8/A:1-157 #375.9/A:1-157
> #375.10/A:1-157 #375.11/A:1-157 #375.12/A:1-157 #375.13/A:1-157
> #375.14/A:1-157 #375.15/A:1-157 #375.16/A:1-157 #375.17/A:1-157
> #375.18/A:1-157
46206 atoms, 46710 bonds, 2826 residues, 18 models selected
1 [ID: 1] region 18 chains [1-157] RMSD: 562.480
> color (#!375.1-18 & sel) #1a8ccbff
> select #375.1/B:179 #375.2/B:179 #375.3/B:179 #375.4/B:179 #375.5/B:179
> #375.6/B:179 #375.7/B:179 #375.8/B:179 #375.9/B:179 #375.10/B:179
> #375.11/B:179 #375.12/B:179 #375.13/B:179 #375.14/B:179 #375.15/B:179
> #375.16/B:179 #375.17/B:179 #375.18/B:179
324 atoms, 306 bonds, 18 residues, 18 models selected
> select #375.1/B:1-179 #375.2/B:1-179 #375.3/B:1-179 #375.4/B:1-179
> #375.5/B:1-179 #375.6/B:1-179 #375.7/B:1-179 #375.8/B:1-179 #375.9/B:1-179
> #375.10/B:1-179 #375.11/B:1-179 #375.12/B:1-179 #375.13/B:1-179
> #375.14/B:1-179 #375.15/B:1-179 #375.16/B:1-179 #375.17/B:1-179
> #375.18/B:1-179
54324 atoms, 54882 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 546.438
> color (#!375.1-18 & sel) #22daa1ff
> select add #375
100530 atoms, 101592 bonds, 6048 residues, 37 models selected
> select subtract #375
36 models selected
> color #406 #c2afbe models transparency 0
> color #406 #c2b48d models transparency 0
> color #406 #c2b48c models transparency 0
> color #406 #c2af87 models transparency 0
> color #406 #c2b490 models transparency 0
> color #393-410 #c2b490 models transparency 0
> hide #!374 models
> hide #!375 models
> color #356-373 #4a9ed2 models transparency 0
> color height #377 axis 0,0,1 update true coordinateSystem #377 palette
> blues-5
> color height #378 axis 0,0,1 update true coordinateSystem #378 palette
> blues-5
> color height #379 axis 0,0,1 update true coordinateSystem #379 palette
> blues-5
> color height #380 axis 0,0,1 update true coordinateSystem #379 palette
> blues-5
> color height #380 axis 0,0,1 update true coordinateSystem #380 palette
> blues-5
> color height #381 axis 0,0,1 update true coordinateSystem #381 palette
> blues-5
> color height #382 axis 0,0,1 update true coordinateSystem #382 palette
> blues-5
> color height #383 axis 0,0,1 update true coordinateSystem #383 palette
> blues-5
> color height #384 axis 0,0,1 update true coordinateSystem #384 palette
> blues-5
> color height #385 axis 0,0,1 update true coordinateSystem #385 palette
> blues-5
> color height #386 axis 0,0,1 update true coordinateSystem #386 palette
> blues-5
> color height #387 axis 0,0,1 update true coordinateSystem #387 palette
> blues-5
> color height #388 axis 0,0,1 update true coordinateSystem #388 palette
> blues-5
> color height #389 axis 0,0,1 update true coordinateSystem #389 palette
> blues-5
> color height #390 axis 0,0,1 update true coordinateSystem #390 palette
> blues-5
> color height #391 axis 0,0,1 update true coordinateSystem #391 palette
> blues-5
> color height #415 axis 0,0,1 update true coordinateSystem #415 palette
> blues-5
> color height #416 axis 0,0,1 update true coordinateSystem #416 palette
> blues-5
> ui mousemode right translate
> ui mousemode right zoom
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-5
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-3
Could not find palette Blues-2 at COLOURlovers.com using keyword search
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-9
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-6
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-5
> color #417 #d3e6eb99 models
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-5
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-3
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-9
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-5
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-6
> color height #417 axis 0,0,1 update true coordinateSystem #417 palette
> blues-5
> color #406 #c6bca2 models transparency 0
> color #406 #c1b79d models transparency 0
> view SIDE
> color #406 #bdb49a models transparency 0
> color #406 #bda778 models transparency 0
> color #406 #bd996d models transparency 0
> color #406 #bd966d models transparency 0
> color #406 #ba936b models transparency 0
> color #406 #b18c66 models transparency 0
> color #406 #b7916a models transparency 0
> color #393-410 #b7916a models transparency 0
> save /Users/shoichi/Desktop/HP-side1.png supersample 2 transparentBackground
> true
> color #356 #4a9ed2 models transparency 0
> color #357 #4a9ed2 models transparency 0
> color #356-373 #4a9ed2 models transparency 0
> save /Users/shoichi/Desktop/HP-side1.png supersample 2 transparentBackground
> true
> color #356 #4a9ed266 models
> color #356-373 #4a9ed266 models
> color #377-391 #d3e6eb99 models
> color #415-418 #d3e6eb99 models
> show #!374 models
> show #!375 models
> save /Users/shoichi/Desktop/HP-side2.png supersample 2 transparentBackground
> true
> hide #!377 models
> hide #!377-391 models
> hide #!415-418 models
> hide #!356-473 models
> show #!374 models
> show #!375 models
> show #!393 models
> show #!394 models
> show #!395 models
> show #!396 models
> show #!397 models
> show #!398 models
> show #!399 models
> show #!400 models
> show #!401 models
> show #!402 models
> show #!403 models
> show #!404 models
> show #!405 models
> show #!406 models
> show #!408 models
> show #!407 models
> show #!409 models
> show #!410 models
> show #!421 models
> show #!422 models
> hide #!281-298 models
> hide #!54-59 models
> hide #!42-47 models
> hide #!32-36 models
> hide #!26 models
> show #!73 models
> color #73 #e9ea24 models transparency 0
> color #73 #eae905 models transparency 0
> color #73 #dad905 models transparency 0
> show #!95 models
> show #!96 models
> turn x 90
> ui tool show "Side View"
> hide #!393-410 models
> color #95 #a6bfaf models transparency 0
> color #95 #bf3e35 models transparency 0
> color #95 #bf60b4 models transparency 0
[Repeated 2 time(s)]
> color #95 #7a6abf models transparency 0
> color #95 #bf3c49 models transparency 0
> color #95 #bf3446 models transparency 0
> color #95 #e03d52 models transparency 0
> color #95 #b23042 models transparency 0
> color #95 #ad2f40 models transparency 0
> tirn x 90
Unknown command: tirn x 90
> tirn x 90
Unknown command: tirn x 90
> turn x 90
[Repeated 2 time(s)]
> show #!393 models
> show #!393-410 models
> view SIDE
> save /Users/shoichi/Desktop/Hp-Side.png supersample 2 transparentBackground
> true
> save /Users/shoichi/Desktop/Hp-Side3.png supersample 2 transparentBackground
> true
> turn x 90
> hide #!312 models
> hide #!316 models
> hide #!16 models
> hide #!19 models
> hide #!10 models
> hide #!313 models
> hide #!393-410 models
> ui tool show "Side View"
> hide #!113 models
> hide #!115 models
> save /Users/shoichi/Desktop/Hp-top1.png supersample 2 transparentBackground
> true
> turn x 90
[Repeated 1 time(s)]
> show #!312 models
> hide #!312 models
> show #!313 models
> hide #!313 models
> save /Users/shoichi/Desktop/Hp-bottom.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-Karen/For-Figure/For-PilNO_figure12.cxs" includeMaps true
——— End of log from Thu Mar 2 10:55:15 2023 ———
opened ChimeraX session
> view SIDE
> show #!372 models
> hide #!372 models
> hide #!96 models
> hide #!95 models
> hide #!73 models
> show #!368 models
> hide #!368 models
> show #!372 models
> hide #!372 models
> show #!371 models
> show #!391 models
> hide #!391 models
> show #!389 models
> hide #!389 models
> show #!416 models
> hide #!1 models
> hide #!8 models
> hide #!9 models
> hide #!114 models
> show #!409 models
> hide #!409 models
> show #!403 models
> hide #!403 models
> show #!398 models
> hide #!398 models
> show #!410 models
> hide #!410 models
> show #!393 models
> show #!394 models
> show #!401 models
> show #!409 models
> show #!405 models
> show #!404 models
> show #!406 models
> hide #!405 models
> hide #!404 models
> hide #!401 models
> hide #!394 models
> hide #!393 models
> hide #!409 models
> hide #!374.9 models
> hide #!374.8 models
> hide #!374.7 models
> hide #!374.6 models
> hide #!374.5 models
> hide #!374.4 models
> hide #!374.3 models
> hide #!374.2 models
> hide #!374 models
> show #!374 models
> hide #!374.10 models
> hide #!374.11 models
> hide #!374.12 models
> hide #!374.13 models
> hide #!374.14 models
> hide #!374.15 models
> hide #!374.16 models
> hide #!374.17 models
> hide #!374.18 models
> hide #!375.2 models
> hide #!375.3 models
> hide #!375.4 models
> hide #!375.5 models
> hide #!375.6 models
> hide #!375.7 models
> hide #!375.8 models
> hide #!375.9 models
> hide #!375.10 models
> hide #!375.11 models
> hide #!375.12 models
> hide #!375.13 models
> hide #!375.14 models
> hide #!375.15 models
> ui mousemode right zoom
> hide #!375.16 models
> hide #!375.17 models
> hide #!375.18 models
> hide #!421.1 models
> show #!421.1 models
> hide #!421.2 models
> hide #!421.2-421.18 models
> hide #!421.3 models
> hide #!421.4 models
> hide #!421.5 models
> hide #!421.6 models
> hide #!421.7 models
> hide #!421.8 models
> hide #!421.9 models
> hide #!421.10 models
> hide #!421.11 models
> hide #!421.12 models
> hide #!421.13 models
> hide #!421.14 models
> hide #!421.15 models
> hide #!421.16 models
> hide #!421.17 models
> hide #!421.18 models
> hide #!422.2 models
> hide #!422.3 models
> hide #!422.4 models
> hide #!422.5 models
> hide #!422.6 models
> hide #!422.7 models
> hide #!422.8 models
> hide #!422.9 models
> hide #!422.10 models
> hide #!422.11 models
> hide #!422.12 models
> hide #!422.13 models
> hide #!422.14 models
> hide #!422.15 models
> hide #!422.16 models
> hide #!422.17 models
> hide #!422.18 models
> color #416 #d3e6eb66 models
> save /Users/shoichi/Desktop/Hp-zoom1.png supersample 2 transparentBackground
> true
> hide #!422.1 models
> hide #!421.1 models
> hide #!422 models
> hide #!421 models
> hide #!374 models
> hide #!375 models
> color #371 #4a9ed2 models transparency 0
> color #416 #d3e6eb models transparency 0
> color height #416 axis 0,0,1 update true coordinateSystem #416 palette
> blues-5
> save /Users/shoichi/Desktop/Hp-zoom2.png supersample 2 transparentBackground
> true
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/For-PilNO_figure13.cxs includeMaps true
——— End of log from Thu Mar 2 18:00:33 2023 ———
opened ChimeraX session
Traceback (most recent call last):
File
"/private/var/folders/fc/84cmpfs17bnfxryyzdntzgn00000gn/T/AppTranslocation/CFBF0252-2605-4758-B109-EF80AABB2E3B/d/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map/volume_viewer.py", line 1530, in
QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50))
RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted
Populating font family aliases took 312 ms. Replace uses of missing font
family ".AppleSystemUIFont" with one that exists to avoid this cost.
RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted
File
"/private/var/folders/fc/84cmpfs17bnfxryyzdntzgn00000gn/T/AppTranslocation/CFBF0252-2605-4758-B109-EF80AABB2E3B/d/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map/volume_viewer.py", line 1530, in
QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50))
See log for complete Python traceback.
Traceback (most recent call last):
File
"/private/var/folders/fc/84cmpfs17bnfxryyzdntzgn00000gn/T/AppTranslocation/CFBF0252-2605-4758-B109-EF80AABB2E3B/d/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map/volume_viewer.py", line 1530, in
QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50))
RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted
RuntimeError: wrapped C/C++ object of type QScrollArea has been deleted
File
"/private/var/folders/fc/84cmpfs17bnfxryyzdntzgn00000gn/T/AppTranslocation/CFBF0252-2605-4758-B109-EF80AABB2E3B/d/ChimeraX-1.4-rc2022.06.03.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/map/volume_viewer.py", line 1530, in
QTimer.singleShot(200, lambda f=f: f.setMinimumHeight(50))
See log for complete Python traceback.
> save "/Users/shoichitachiyama/OneDrive - Yale
> University/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_maps.cxs" includeMaps true
> show #!418 models
> show #!415-418 models
> show #!393-410 models
> show #!377-391 models
> show #!356-373 models
> show #!239-259 models
> show #!177-216 models
> show #!282 models
> show #!282-298 models
> show #!281 models
> show #!26 models
> show #!117 models
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/13c-PflB_Seg_Shoichi_Bin2/For-
> Chimera/Segmentations/PflB13c-clean.mrc
Opened PflB13c-clean.mrc as #423, grid size 180,180,180, pixel 4.3, shown at
level 0.0085, step 1, values float32
> hide #!410 models
> hide #!393-410 models
> hide #!117 models
> show #!310 models
> hide #!310 models
> show #!310 models
> show #!355 models
> hide #!355 models
> show #!394 models
> hide #!394 models
> show #!393 models
> hide #!393 models
> select add #423
2 models selected
> select subtract #423
Nothing selected
> ui mousemode right "translate selected models"
> select add #423
2 models selected
> view matrix models #423,1,0,0,155.73,0,1,0,154.41,0,0,1,15.429
> view matrix models #423,1,0,0,157.99,0,1,0,151.91,0,0,1,32.577
> view matrix models #423,1,0,0,153.93,0,1,0,154.67,0,0,1,113.31
> view matrix models #423,1,0,0,148.64,0,1,0,155.77,0,0,1,147.5
> show #!263 models
> hide #!263 models
> show #!263 models
> select subtract #423
Nothing selected
> hide #!423 models
> show #!97 models
> show #!423 models
> ui tool show "Fit in Map"
> fitmap #423 inMap #97
Fit map PflB13c-clean.mrc in map PlfB.mrc using 58034 points
correlation = 0.3507, correlation about mean = 0.08099, overlap = 104.4
steps = 288, shift = 11.4, angle = 8.44 degrees
Position of PflB13c-clean.mrc (#423) relative to PlfB.mrc (#97) coordinates:
Matrix rotation and translation
0.98917476 0.14673969 0.00086767 97.94960180
-0.14674021 0.98917491 0.00056187 211.29044863
-0.00077583 -0.00068311 0.99999947 158.13344864
Axis -0.00424201 0.00559991 -0.99997532
Axis point 1486.71563233 -553.27920408 0.00000000
Rotation angle (degrees) 8.43825860
Shift along axis -157.36184227
> fitmap #423 inMap #97
Fit map PflB13c-clean.mrc in map PlfB.mrc using 58034 points
correlation = 0.3508, correlation about mean = 0.08094, overlap = 104.5
steps = 40, shift = 0.0203, angle = 0.111 degrees
Position of PflB13c-clean.mrc (#423) relative to PlfB.mrc (#97) coordinates:
Matrix rotation and translation
0.98888985 0.14864764 0.00086712 97.31707070
-0.14864821 0.98888993 0.00064309 212.11778689
-0.00076189 -0.00076484 0.99999942 158.17396099
Axis -0.00473567 0.00547929 -0.99997378
Axis point 1473.11015306 -539.56372078 0.00000000
Rotation angle (degrees) 8.54880586
Shift along axis -157.46841857
> fitmap #423 inMap #97
Fit map PflB13c-clean.mrc in map PlfB.mrc using 58034 points
correlation = 0.351, correlation about mean = 0.0811, overlap = 104.5
steps = 40, shift = 0.0528, angle = 0.0435 degrees
Position of PflB13c-clean.mrc (#423) relative to PlfB.mrc (#97) coordinates:
Matrix rotation and translation
0.98877808 0.14938983 0.00076233 97.10861793
-0.14939030 0.98877812 0.00061244 212.46170848
-0.00066228 -0.00071945 0.99999952 158.17070331
Axis -0.00445766 0.00476800 -0.99997870
Axis point 1467.41751602 -535.10278270 0.00000000
Rotation angle (degrees) 8.59176594
Shift along axis -157.58719266
> hide #!97 models
> show #!410 models
> hide #!410 models
> color #310 #1a8ccb36 models
> color #310 #af7301 models transparency 0
> color #310 #c47a34 models transparency 0
> color #310 #a99366 models transparency 0
> color #310 #7c6c4b models transparency 0
> hide #!310 models
> show #!410 models
> show #!409 models
> show #!408 models
> show #!407 models
> save "/Users/shoichitachiyama/OneDrive - Yale
> University/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/updated-
> Using_PilNO_maps.cxs" includeMaps true
[Repeated 1 time(s)]
——— End of log from Fri Aug 11 09:41:19 2023 ———
opened ChimeraX session
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/Using_previous-map-
> Cage-Top-withPflA/PflA.mrc
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
> hide #!26 models
> hide #!177-216 models
> hide #!239-259 models
> hide #!281-298 models
> ui tool show "Hide Dust"
> surface dust #424 size 25.78
> select add #424
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #424,1,0,0,-222.29,0,1,0,138.8,0,0,1,-72.891
> ui mousemode right "rotate selected models"
> view matrix models
> #424,0.97282,0.19893,0.11851,-331.07,-0.22051,0.63972,0.7363,40.537,0.070653,-0.74242,0.6662,299.38
> view matrix models
> #424,0.62339,0.44086,0.64578,-522.58,-0.15661,-0.73876,0.65552,539.77,0.76607,-0.50978,-0.39149,432.05
> view matrix models
> #424,0.68005,0.37164,0.63199,-509.07,0.1091,-0.9037,0.41402,616.18,0.725,-0.2126,-0.65512,442.47
> view matrix models
> #424,0.97168,0.13536,-0.19368,-185.93,0.17709,-0.95984,0.21761,693.42,-0.15644,-0.24575,-0.95663,825.9
> view matrix models
> #424,0.95317,0.089602,-0.28887,-127.14,0.059605,-0.99203,-0.11103,867.42,-0.29652,0.088616,-0.95091,746.08
> view matrix models
> #424,0.96429,0.086802,-0.25024,-144.5,0.017058,-0.96317,-0.26837,931.17,-0.26432,0.25451,-0.93025,670.24
> ui mousemode right "translate selected models"
> view matrix models
> #424,0.96429,0.086802,-0.25024,-32.895,0.017058,-0.96317,-0.26837,909.66,-0.26432,0.25451,-0.93025,676.19
> hide #!423 models
> view matrix models
> #424,0.96429,0.086802,-0.25024,50.21,0.017058,-0.96317,-0.26837,946.71,-0.26432,0.25451,-0.93025,670.89
> view matrix models
> #424,0.96429,0.086802,-0.25024,-228.46,0.017058,-0.96317,-0.26837,895.88,-0.26432,0.25451,-0.93025,800.46
> view matrix models
> #424,0.96429,0.086802,-0.25024,-228.59,0.017058,-0.96317,-0.26837,895.78,-0.26432,0.25451,-0.93025,800.57
> ui mousemode right "rotate selected models"
> view matrix models
> #424,0.95957,0.091206,-0.26628,-222.5,0.0055653,-0.95201,-0.30603,909.92,-0.28141,0.29217,-0.91403,785.85
> view matrix models
> #424,0.74639,0.44363,-0.49608,-195.32,-0.52106,-0.074147,-0.85029,965.33,-0.414,0.89314,0.17582,184.82
> view matrix models
> #424,0.16524,-0.048197,0.98508,-435.52,0.86456,0.48771,-0.12116,82.831,-0.47459,0.87167,0.12226,230.82
> view matrix models
> #424,-0.4533,-0.32352,0.83058,-99.97,0.76223,0.34237,0.54935,-99.399,-0.46209,0.88211,0.091399,235.64
> view matrix models
> #424,0.83263,0.35279,0.42693,-550,0.31455,0.33325,-0.88882,596.48,-0.45584,0.87435,0.1665,207.13
> view matrix models
> #424,0.89699,0.43062,0.099918,-467.73,0.012601,0.20103,-0.9795,765.49,-0.44188,0.87986,0.1749,197.88
> close #424
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/Using_previous-map-
> Cage-Top-withPflA/PflA.mrc
Opened PflA.mrc as #424, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00712, step 1, values float32
> hide #!356-373 models
> hide #!377-391 models
> surface dust #424 size 25.78
> select add #424
2 models selected
> view matrix models
> #424,-0.92194,0.19608,0.33402,352.73,-0.19257,-0.9803,0.043951,736.25,0.33606,-0.023802,0.94154,-65.351
> ui mousemode right "translate selected models"
> view matrix models
> #424,-0.92194,0.19608,0.33402,382.07,-0.19257,-0.9803,0.043951,817.84,0.33606,-0.023802,0.94154,31.746
> view matrix models
> #424,-0.92194,0.19608,0.33402,347.72,-0.19257,-0.9803,0.043951,836.94,0.33606,-0.023802,0.94154,41.773
> hide #!407 models
> hide #!408 models
> show #!407 models
> hide #!409 models
> hide #!410 models
> ui mousemode right "rotate selected models"
> view matrix models
> #424,-0.84305,0.49069,0.22023,265.78,-0.50828,-0.86074,-0.027927,913.78,0.17586,-0.13548,0.97505,114.08
> ui mousemode right "translate selected models"
> view matrix models
> #424,-0.84305,0.49069,0.22023,267.98,-0.50828,-0.86074,-0.027927,889.51,0.17586,-0.13548,0.97505,103.82
> select subtract #424
Nothing selected
> color #407 #b7916a74 models
> color #424 #3924fc models transparency 0
> ui tool show "Fit in Map"
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.93
steps = 560, shift = 20.7, angle = 14.5 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999886 0.00147149 -0.00034354 0.50003838
-0.00147154 0.99999891 -0.00015166 0.77100993
0.00034331 0.00015217 0.99999993 -0.23304520
Axis 0.10003028 -0.22613640 -0.96894596
Axis point 539.78871727 -332.50135502 0.00000000
Rotation angle (degrees) 0.08701369
Shift along axis 0.10147378
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.0753, angle = 0.00596 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999888 0.00143132 -0.00043307 0.53036138
-0.00143140 0.99999896 -0.00018643 0.78891186
0.00043280 0.00018705 0.99999989 -0.20713616
Axis 0.12391128 -0.28728172 -0.94979746
Axis point 558.60077637 -367.00235561 0.00000000
Rotation angle (degrees) 0.08634589
Shift along axis 0.03581520
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.92
steps = 44, shift = 0.0914, angle = 0.00576 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999885 0.00147467 -0.00035100 0.50368196
-0.00147472 0.99999890 -0.00014784 0.76308613
0.00035078 0.00014836 0.99999993 -0.24857672
Axis 0.09723499 -0.23038012 -0.96823053
Axis point 535.47885130 -333.63122246 0.00000000
Rotation angle (degrees) 0.08726631
Shift along axis 0.11385521
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.93
steps = 560, shift = 20.7, angle = 14.5 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999886 0.00147149 -0.00034354 0.50003838
-0.00147154 0.99999891 -0.00015166 0.77100993
0.00034331 0.00015217 0.99999993 -0.23304520
Axis 0.10003028 -0.22613640 -0.96894596
Axis point 539.78871727 -332.50135502 0.00000000
Rotation angle (degrees) 0.08701369
Shift along axis 0.10147378
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.0753, angle = 0.00596 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999888 0.00143132 -0.00043307 0.53036138
-0.00143140 0.99999896 -0.00018643 0.78891186
0.00043280 0.00018705 0.99999989 -0.20713616
Axis 0.12391128 -0.28728172 -0.94979746
Axis point 558.60077637 -367.00235561 0.00000000
Rotation angle (degrees) 0.08634589
Shift along axis 0.03581520
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.92
steps = 44, shift = 0.0914, angle = 0.00576 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999885 0.00147467 -0.00035100 0.50368196
-0.00147472 0.99999890 -0.00014784 0.76308613
0.00035078 0.00014836 0.99999993 -0.24857672
Axis 0.09723499 -0.23038012 -0.96823053
Axis point 535.47885130 -333.63122246 0.00000000
Rotation angle (degrees) 0.08726631
Shift along axis 0.11385521
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.0777, angle = 0.00364 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999887 0.00144617 -0.00040169 0.51697918
-0.00144624 0.99999894 -0.00017333 0.78624611
0.00040144 0.00017391 0.99999990 -0.20392747
Axis 0.11491069 -0.26577315 -0.95716256
Axis point 552.29235308 -353.42424819 0.00000000
Rotation angle (degrees) 0.08657017
Shift along axis 0.04563507
> show #!423 models
> hide #!423 models
> show #!423 models
> hide #!423 models
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 shos;
Expected a keyword
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> hide #!424 models
> show #!424 models
> hide #!407 models
> show #!407 models
> hide #!425 models
> show #!425 models
> hide #!426 models
> show #!426 models
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #263
> volume copy #424
Opened PflA.mrc copy as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
[Repeated 1 time(s)]
> hide #!442 models
> close #442
> close #425-441
> select add #424
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #424,-0.92543,0.37621,0.045326,399.57,-0.37647,-0.92643,0.0030801,849.86,0.04315,-0.014213,0.99897,72.43
> ui mousemode right "translate selected models"
> view matrix models
> #424,-0.92543,0.37621,0.045326,405.6,-0.37647,-0.92643,0.0030801,857.42,0.04315,-0.014213,0.99897,104.77
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9974, overlap = 30.96
steps = 72, shift = 5.25, angle = 1.95 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999894 0.00142583 -0.00041507 0.53782685
-0.00142592 0.99999901 -0.00021211 0.79914217
0.00041476 0.00021270 0.99999995 -0.22157301
Axis 0.14159005 -0.27658446 -0.95050160
Axis point 573.45789657 -370.23155969 0.00000000
Rotation angle (degrees) 0.08595121
Shift along axis 0.06572613
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9974, overlap = 30.96
steps = 44, shift = 0.0584, angle = 0.00633 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999886 0.00147980 -0.00042894 0.52924335
-0.00147985 0.99999895 -0.00011674 0.73816564
0.00042877 0.00011737 0.99999996 -0.21787448
Axis 0.07575772 -0.27754937 -0.95771975
Axis point 507.30563626 -354.99230067 0.00000000
Rotation angle (degrees) 0.08853077
Shift along axis 0.04387955
> select subtract #424
Nothing selected
> view orient
> show #!15 models
> view orient
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 shos;
Expected a keyword
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 shos;
Expected a keyword
> close #425-426
> show #!424 models
> select add #424
2 models selected
> view matrix models
> #424,-0.46189,0.88664,0.022983,143.34,-0.88693,-0.46168,-0.014017,828.88,-0.0018174,-0.026858,0.99964,80.698
> view matrix models
> #424,-0.46189,0.88664,0.022983,134.9,-0.88693,-0.46168,-0.014017,828.9,-0.0018174,-0.026858,0.99964,116.27
> ui mousemode right "rotate selected models"
> view matrix models
> #424,-0.87969,0.4746,0.030025,397.57,-0.47532,-0.87554,-0.086643,884.87,-0.014833,-0.09049,0.99579,143.95
> ui mousemode right "translate selected models"
> view matrix models
> #424,-0.87969,0.4746,0.030025,362.43,-0.47532,-0.87554,-0.086643,903.12,-0.014833,-0.09049,0.99579,141.84
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.93
steps = 148, shift = 7.98, angle = 7.85 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999893 0.00143891 -0.00040653 0.53297975
-0.00143899 0.99999900 -0.00018059 0.77258318
0.00040627 0.00018117 0.99999996 -0.25798886
Axis 0.12009541 -0.26982789 -0.95538997
Axis point 556.28915611 -361.45725385 0.00000000
Rotation angle (degrees) 0.08629538
Shift along axis 0.10202391
> select subtract #424
Nothing selected
> view orient
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
[Repeated 1 time(s)]
> hide #!424 models
> show #!424 models
> volume #424 show
> hide #!424 models
> show #!424 models
> hide #!425 models
> show #!425 models
> close #425-441
> select add #424
2 models selected
> view matrix models
> #424,-0.99896,0.043924,0.012318,553.21,-0.043867,-0.99903,0.0048723,807.98,0.01252,0.0043269,0.99991,97.594
> ui mousemode right "rotate selected models"
> view matrix models
> #424,-0.93025,0.36436,-0.043311,442.29,-0.36578,-0.93019,0.030819,866.13,-0.029058,0.044511,0.99859,95.907
> ui mousemode right "translate selected models"
> view matrix models
> #424,-0.93025,0.36436,-0.043311,450.52,-0.36578,-0.93019,0.030819,847.48,-0.029058,0.044511,0.99859,93.894
> view matrix models
> #424,-0.93025,0.36436,-0.043311,449.1,-0.36578,-0.93019,0.030819,846.22,-0.029058,0.044511,0.99859,98.623
> fitmap #424 inMap #407
Fit map PflA.mrc in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.94
steps = 124, shift = 12.4, angle = 3.77 degrees
Position of PflA.mrc (#424) relative to Cage-top-withPflA.mrc copy (#407)
coordinates:
Matrix rotation and translation
0.99999889 0.00147736 -0.00036768 0.50087060
-0.00147741 0.99999895 -0.00013425 0.77238990
0.00036748 0.00013479 0.99999996 -0.21737809
Axis 0.08801405 -0.24050737 -0.96664871
Axis point 534.19178724 -334.53413507 0.00000000
Rotation angle (degrees) 0.08756845
Shift along axis 0.06844644
> select subtract #424
Nothing selected
> view orient
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #425, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #426, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #427, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #428, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #429, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #430, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #431, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #432, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #433, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #434, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #435, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #436, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #437, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #438, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #439, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #440, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #441, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> turn z 20 models #424 center #15
> volume copy #424
Opened PflA.mrc copy as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #424 show
> surface dust #424 size 25.78
> surface dust #425 size 25.78
> surface dust #425 size 29.31
[Repeated 1 time(s)]
> surface dust #425 size 31.89
[Repeated 2 time(s)]
> surface dust #426 size 25.78
> surface dust #427 size 25.78
> surface dust #428 size 25.78
> surface dust #429 size 25.78
[Repeated 1 time(s)]
> surface dust #430 size 25.78
> surface dust #431 size 25.78
> surface dust #432 size 25.78
[Repeated 1 time(s)]
> surface dust #433 size 25.78
> surface dust #434 size 25.78
[Repeated 1 time(s)]
> surface dust #435 size 25.78
> surface dust #436 size 25.78
> surface dust #437 size 25.78
[Repeated 2 time(s)]
> surface dust #438 size 25.78
> surface dust #439 size 25.78
> surface dust #440 size 25.78
> surface dust #441 size 25.78
> surface dust #442 size 25.78
> show #!423 models
> hide #!407 models
> show #!408 models
> hide #!424 models
> hide #!425 models
> show #!425 models
> hide #!426 models
> hide #!427 models
> hide #!428 models
> hide #!429 models
> hide #!430 models
> hide #!431 models
> hide #!432 models
> hide #!433 models
> hide #!434 models
> hide #!435 models
> hide #!436 models
> hide #!437 models
> hide #!438 models
> hide #!439 models
> hide #!440 models
> hide #!441 models
> hide #!442 models
> fitmap #425 inMap #408
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.93
steps = 64, shift = 5.84, angle = 1.15 degrees
Position of PflA.mrc copy (#425) relative to Cage-top-withPflA.mrc copy (#408)
coordinates:
Matrix rotation and translation
0.99999897 0.00139342 -0.00044797 0.56268741
-0.00139353 0.99999905 -0.00024032 0.78797142
0.00044763 0.00024094 0.99999991 -0.28837028
Axis 0.16222690 -0.30189222 -0.93943788
Axis point 592.65753919 -388.88844666 0.00000000
Rotation angle (degrees) 0.08498749
Shift along axis 0.12430656
> show #!424 models
> show #!409 models
> hide #!409 models
> show #!407 models
> show #!409 models
> show #!426 models
> hide #!426 models
> show #!426 models
> fitmap #426 inMap #409
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.94
steps = 76, shift = 12.1, angle = 2.26 degrees
Position of PflA.mrc copy (#426) relative to Cage-top-withPflA.mrc copy (#409)
coordinates:
Matrix rotation and translation
0.99999892 0.00144952 -0.00038853 0.51936424
-0.00144959 0.99999898 -0.00017132 0.77596493
0.00038828 0.00017188 0.99999995 -0.23723649
Axis 0.11360878 -0.25714105 -0.95967261
Axis point 551.01518037 -351.04195402 0.00000000
Rotation angle (degrees) 0.08654363
Shift along axis 0.08714127
> show #!410 models
> show #!427 models
> fitmap #427 inMap #410
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9962, correlation about mean = 0.9975, overlap = 30.96
steps = 100, shift = 19.1, angle = 3.3 degrees
Position of PflA.mrc copy (#427) relative to Cage-top-withPflA.mrc copy (#410)
coordinates:
Matrix rotation and translation
0.99999893 0.00143122 -0.00043003 0.52663484
-0.00143130 0.99999901 -0.00018597 0.79233060
0.00042976 0.00018658 0.99999993 -0.19513171
Axis 0.12369100 -0.28545552 -0.95037660
Axis point 558.70901956 -365.41641874 0.00000000
Rotation angle (degrees) 0.08628704
Shift along axis 0.02441346
> show #!393 models
> show #!428 models
> fitmap #428 inMap #393
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.93
steps = 144, shift = 26.6, angle = 4.24 degrees
Position of PflA.mrc copy (#428) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999892 0.00145203 -0.00038436 0.52171036
-0.00145209 0.99999898 -0.00016830 0.77076225
0.00038412 0.00016886 0.99999995 -0.25260718
Axis 0.11153447 -0.25421638 -0.96069459
Axis point 549.42251841 -350.81175365 0.00000000
Rotation angle (degrees) 0.08660070
Shift along axis 0.10492665
> fitmap #428 inMap #393
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.077, angle = 0.00343 degrees
Position of PflA.mrc copy (#428) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999893 0.00142936 -0.00043650 0.53128165
-0.00142944 0.99999901 -0.00018715 0.78889559
0.00043623 0.00018777 0.99999993 -0.20562266
Axis 0.12445797 -0.28970732 -0.94898887
Axis point 558.78680293 -368.40718896 0.00000000
Rotation angle (degrees) 0.08630105
Shift along axis 0.03270703
> show #!394 models
> hide #!394 models
> show #!394 models
> hide #!394 models
> show #!394 models
> show #!429 models
> fitmap #429 inMap #394
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.93
steps = 164, shift = 34.2, angle = 5.06 degrees
Position of PflA.mrc copy (#429) relative to Cage-top-withPflA.mrc copy (#394)
coordinates:
Matrix rotation and translation
0.99999893 0.00144051 -0.00040372 0.53150954
-0.00144059 0.99999899 -0.00017895 0.77270146
0.00040346 0.00017953 0.99999994 -0.25731411
Axis 0.11896232 -0.26785823 -0.95608574
Axis point 555.65848731 -360.09448244 0.00000000
Rotation angle (degrees) 0.08632859
Shift along axis 0.10226951
> show #!395 models
> hide #!395 models
> show #!395 models
> show #!430 models
> fitmap #430 inMap #395
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.92
steps = 168, shift = 41.1, angle = 5.71 degrees
Position of PflA.mrc copy (#430) relative to Cage-top-withPflA.mrc copy (#395)
coordinates:
Matrix rotation and translation
0.99999889 0.00148517 -0.00031621 0.49357114
-0.00148522 0.99999893 -0.00014776 0.77110227
0.00031598 0.00014822 0.99999998 -0.23219821
Axis 0.09700144 -0.20718594 -0.97348072
Axis point 535.35217300 -324.46113544 0.00000000
Rotation angle (degrees) 0.08741362
Shift along axis 0.11415604
> fitmap #430 inMap #395
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.96
steps = 36, shift = 0.0868, angle = 0.0123 degrees
Position of PflA.mrc copy (#430) relative to Cage-top-withPflA.mrc copy (#395)
coordinates:
Matrix rotation and translation
0.99999895 0.00139742 -0.00049943 0.56714498
-0.00139753 0.99999905 -0.00021732 0.78901080
0.00049913 0.00021802 0.99999989 -0.24339287
Axis 0.14512468 -0.33288304 -0.93173371
Axis point 575.92341556 -400.57542448 0.00000000
Rotation angle (degrees) 0.08593590
Shift along axis 0.04643576
> show #!396 models
> show #!431 models
> fitmap #431 inMap #396
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.93
steps = 188, shift = 46.7, angle = 6.2 degrees
Position of PflA.mrc copy (#431) relative to Cage-top-withPflA.mrc copy (#396)
coordinates:
Matrix rotation and translation
0.99999889 0.00148027 -0.00034186 0.49817379
-0.00148032 0.99999894 -0.00014147 0.76640138
0.00034165 0.00014198 0.99999997 -0.23350963
Axis 0.09288445 -0.22398006 -0.97015742
Axis point 533.27722052 -329.77835673 0.00000000
Rotation angle (degrees) 0.08742388
Shift along axis 0.10115507
> fitmap #431 inMap #396
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.0782, angle = 0.00622 degrees
Position of PflA.mrc copy (#431) relative to Cage-top-withPflA.mrc copy (#396)
coordinates:
Matrix rotation and translation
0.99999893 0.00143334 -0.00042901 0.52899448
-0.00143342 0.99999900 -0.00018600 0.78876568
0.00042874 0.00018661 0.99999993 -0.20852986
Axis 0.12356844 -0.28445023 -0.95069391
Axis point 558.32274119 -365.24391739 0.00000000
Rotation angle (degrees) 0.08638613
Shift along axis 0.03925051
> show #!397 models
> show #!432 models
> fitmap #432 inMap #397
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.94
steps = 212, shift = 50.5, angle = 6.5 degrees
Position of PflA.mrc copy (#432) relative to Cage-top-withPflA.mrc copy (#397)
coordinates:
Matrix rotation and translation
0.99999892 0.00144356 -0.00040260 0.52807501
-0.00144363 0.99999899 -0.00017768 0.77519073
0.00040234 0.00017826 0.99999994 -0.24893553
Axis 0.11792486 -0.26668036 -0.95654342
Axis point 554.53826105 -357.73248081 0.00000000
Rotation angle (degrees) 0.08646946
Shift along axis 0.09366267
> fitmap #432 inMap #397
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9962, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.0707, angle = 0.00425 degrees
Position of PflA.mrc copy (#432) relative to Cage-top-withPflA.mrc copy (#397)
coordinates:
Matrix rotation and translation
0.99999892 0.00142658 -0.00047478 0.54339889
-0.00142666 0.99999902 -0.00017901 0.77782484
0.00047452 0.00017968 0.99999991 -0.20703645
Axis 0.11844587 -0.31347439 -0.94218065
Axis point 548.90861956 -379.18072669 0.00000000
Rotation angle (degrees) 0.08675547
Shift along axis 0.01560092
> show #!398 models
> show #!433 models
> fitmap #433 inMap #398
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.96
steps = 216, shift = 51.9, angle = 6.6 degrees
Position of PflA.mrc copy (#433) relative to Cage-top-withPflA.mrc copy (#398)
coordinates:
Matrix rotation and translation
0.99999892 0.00143822 -0.00042465 0.52672482
-0.00143830 0.99999900 -0.00018728 0.78650285
0.00042438 0.00018788 0.99999993 -0.22325883
Axis 0.12411928 -0.28089416 -0.95167898
Axis point 558.20964739 -360.88527154 0.00000000
Rotation angle (degrees) 0.08659030
Shift along axis 0.05692338
> show #!399 models
> show #!434 models
> fitmap #434 inMap #399
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9962, correlation about mean = 0.9975, overlap = 30.97
steps = 208, shift = 50.8, angle = 6.5 degrees
Position of PflA.mrc copy (#434) relative to Cage-top-withPflA.mrc copy (#399)
coordinates:
Matrix rotation and translation
0.99999890 0.00144966 -0.00043092 0.52455976
-0.00144972 0.99999899 -0.00014204 0.77163958
0.00043071 0.00014266 0.99999994 -0.18013059
Axis 0.09371094 -0.28361135 -0.95434944
Axis point 532.96616637 -361.28644774 0.00000000
Rotation angle (degrees) 0.08703433
Shift along axis 0.00221877
> show #!400 models
> show #!435 models
> fitmap #435 inMap #400
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.96
steps = 216, shift = 47.3, angle = 6.2 degrees
Position of PflA.mrc copy (#435) relative to Cage-top-withPflA.mrc copy (#400)
coordinates:
Matrix rotation and translation
0.99999893 0.00141405 -0.00048279 0.55365528
-0.00141414 0.99999903 -0.00019850 0.78758897
0.00048251 0.00019918 0.99999991 -0.21623873
Axis 0.13191286 -0.32019595 -0.93812236
Axis point 562.58676209 -388.88397008 0.00000000
Rotation angle (degrees) 0.08636573
Shift along axis 0.02370984
> fitmap #435 inMap #400
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.93
steps = 28, shift = 0.0927, angle = 0.00967 degrees
Position of PflA.mrc copy (#435) relative to Cage-top-withPflA.mrc copy (#400)
coordinates:
Matrix rotation and translation
0.99999890 0.00147969 -0.00033831 0.49597829
-0.00147974 0.99999895 -0.00014102 0.76795857
0.00033809 0.00014152 0.99999997 -0.23109993
Axis 0.09266879 -0.22185336 -0.97066656
Axis point 534.20707048 -328.51773418 0.00000000
Rotation angle (degrees) 0.08734349
Shift along axis 0.09990849
> fitmap #435 inMap #400
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.0766, angle = 0.00613 degrees
Position of PflA.mrc copy (#435) relative to Cage-top-withPflA.mrc copy (#400)
coordinates:
Matrix rotation and translation
0.99999893 0.00143467 -0.00042541 0.52700803
-0.00143475 0.99999900 -0.00018396 0.78852014
0.00042515 0.00018457 0.99999993 -0.20635584
Axis 0.12221716 -0.28206909 -0.95157763
Axis point 557.39409486 -363.63530645 0.00000000
Rotation angle (degrees) 0.08638574
Shift along axis 0.03835587
> show #!401 models
> show #!436 models
> fitmap #436 inMap #401
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9962, correlation about mean = 0.9976, overlap = 30.96
steps = 204, shift = 41.8, angle = 5.71 degrees
Position of PflA.mrc copy (#436) relative to Cage-top-withPflA.mrc copy (#401)
coordinates:
Matrix rotation and translation
0.99999893 0.00143131 -0.00043325 0.52170214
-0.00143139 0.99999901 -0.00018307 0.79498329
0.00043299 0.00018368 0.99999993 -0.17617493
Axis 0.12171146 -0.28747411 -0.95002366
Axis point 556.12697752 -363.86115710 0.00000000
Rotation angle (degrees) 0.08632427
Shift along axis 0.00233036
> show #!402 models
> show #!437 models
> fitmap #437 inMap #402
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.93
steps = 184, shift = 34.8, angle = 5.05 degrees
Position of PflA.mrc copy (#437) relative to Cage-top-withPflA.mrc copy (#402)
coordinates:
Matrix rotation and translation
0.99999892 0.00144409 -0.00041309 0.53447571
-0.00144417 0.99999899 -0.00017273 0.76978198
0.00041284 0.00017332 0.99999994 -0.26070898
Axis 0.11443910 -0.27313231 -0.95514524
Axis point 552.19312804 -361.76130073 0.00000000
Rotation angle (degrees) 0.08662824
Shift along axis 0.09992753
> fitmap #437 inMap #402
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.96
steps = 36, shift = 0.0754, angle = 0.00308 degrees
Position of PflA.mrc copy (#437) relative to Cage-top-withPflA.mrc copy (#402)
coordinates:
Matrix rotation and translation
0.99999893 0.00142066 -0.00045658 0.54137770
-0.00142075 0.99999902 -0.00019377 0.78800768
0.00045630 0.00019442 0.99999992 -0.21291255
Axis 0.12898256 -0.30332294 -0.94411794
Axis point 561.71068738 -377.74604708 0.00000000
Rotation angle (degrees) 0.08621831
Shift along axis 0.03182203
> show #!403 models
> show #!438 models
> fitmap #438 inMap #403
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.93
steps = 164, shift = 27.2, angle = 4.24 degrees
Position of PflA.mrc copy (#438) relative to Cage-top-withPflA.mrc copy (#403)
coordinates:
Matrix rotation and translation
0.99999890 0.00147756 -0.00034465 0.49852110
-0.00147761 0.99999895 -0.00014550 0.76876222
0.00034443 0.00014601 0.99999997 -0.23245991
Axis 0.09562685 -0.22604664 -0.96941138
Axis point 535.70254817 -330.55399571 0.00000000
Rotation angle (degrees) 0.08733087
Shift along axis 0.09924517
> fitmap #438 inMap #403
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.97
steps = 36, shift = 0.0732, angle = 0.00546 degrees
Position of PflA.mrc copy (#438) relative to Cage-top-withPflA.mrc copy (#403)
coordinates:
Matrix rotation and translation
0.99999893 0.00143609 -0.00042196 0.52565638
-0.00143616 0.99999900 -0.00018253 0.78837121
0.00042170 0.00018314 0.99999994 -0.20552274
Axis 0.12124886 -0.27974436 -0.95238743
Axis point 556.78992353 -362.31276705 0.00000000
Rotation angle (degrees) 0.08639754
Shift along axis 0.03893012
> show #!404 models
> show #!439 models
> fitmap #439 inMap #404
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9959, correlation about mean = 0.9973, overlap = 30.93
steps = 124, shift = 19.5, angle = 3.3 degrees
Position of PflA.mrc copy (#439) relative to Cage-top-withPflA.mrc copy (#404)
coordinates:
Matrix rotation and translation
0.99999889 0.00147839 -0.00035741 0.50493087
-0.00147844 0.99999895 -0.00013891 0.76269196
0.00035721 0.00013944 0.99999997 -0.23728450
Axis 0.09112067 -0.23394258 -0.96797102
Axis point 531.51659343 -335.12949863 0.00000000
Rotation angle (degrees) 0.08750996
Shift along axis 0.09726803
> fitmap #439 inMap #404
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.96
steps = 36, shift = 0.0749, angle = 0.00648 degrees
Position of PflA.mrc copy (#439) relative to Cage-top-withPflA.mrc copy (#404)
coordinates:
Matrix rotation and translation
0.99999893 0.00142650 -0.00044169 0.53705791
-0.00142658 0.99999901 -0.00019357 0.78855454
0.00044141 0.00019420 0.99999993 -0.21913133
Axis 0.12875410 -0.29322517 -0.94733383
Axis point 562.38273396 -371.93922583 0.00000000
Rotation angle (degrees) 0.08627878
Shift along axis 0.04551489
> show #!405 models
> show #!440 models
> hide #!440 models
> show #!440 models
> fitmap #440 inMap #405
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.9961, correlation about mean = 0.9975, overlap = 30.96
steps = 88, shift = 12.3, angle = 2.25 degrees
Position of PflA.mrc copy (#440) relative to Cage-top-withPflA.mrc copy (#405)
coordinates:
Matrix rotation and translation
0.99999894 0.00141837 -0.00045590 0.54518091
-0.00141846 0.99999902 -0.00020186 0.78917849
0.00045561 0.00020251 0.99999992 -0.22710215
Axis 0.13447578 -0.30313051 -0.94341304
Axis point 566.96894310 -379.34585291 0.00000000
Rotation angle (degrees) 0.08614363
Shift along axis 0.04834068
> show #!406 models
> show #!441 models
> fitmap #441 inMap #406
Fit map PflA.mrc copy in map Cage-top-withPflA.mrc copy using 45194 points
correlation = 0.996, correlation about mean = 0.9974, overlap = 30.93
steps = 60, shift = 5.85, angle = 1.14 degrees
Position of PflA.mrc copy (#441) relative to Cage-top-withPflA.mrc copy (#406)
coordinates:
Matrix rotation and translation
0.99999897 0.00141380 -0.00040782 0.52579739
-0.00141390 0.99999903 -0.00022674 0.81787793
0.00040750 0.00022731 0.99999993 -0.26000919
Axis 0.15248215 -0.27380878 -0.94961990
Axis point 598.69187771 -360.31989097 0.00000000
Rotation angle (degrees) 0.08530541
Shift along axis 0.10314246
> close #442
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/Using_previous-map-
> Cage-Top-withPflA/Cage_top.mrc
Opened Cage_top.mrc as #442, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
> hide #!410 models
> hide #!409 models
> hide #!408 models
> hide #!407 models
> hide #!406 models
> hide #!405 models
> hide #!404 models
> hide #!403 models
> hide #!402 models
> hide #!401 models
> hide #!400 models
> hide #!399 models
> hide #!398 models
> hide #!397 models
> hide #!396 models
> hide #!395 models
> hide #!394 models
> select add #442
2 models selected
> view matrix models #442,1,0,0,370.3,0,1,0,-285.12,0,0,1,-16.788
> ui mousemode right "rotate selected models"
> view matrix models
> #442,0.99894,0.005816,0.04561,349.18,-0.0036931,0.99891,-0.046492,-263.61,-0.04583,0.046274,0.99788,-16.032
> view matrix models
> #442,0.99998,0.00068425,0.006379,367.35,-0.00064293,0.99998,-0.0064758,-282.12,-0.0063833,0.0064716,0.99996,-16.801
> view matrix models
> #442,0.99905,-0.014045,-0.041267,393.06,0.013715,0.99987,-0.0082891,-286.21,0.041378,0.0077153,0.99911,-33.176
> view matrix models
> #442,0.99985,-0.0061882,-0.015883,379.26,0.0060739,0.99996,-0.0072376,-284.08,0.015927,0.0071401,0.99985,-24.601
> view matrix models
> #442,0.58841,0.7755,-0.22885,343.84,-0.76933,0.62406,0.1367,47.597,0.24882,0.095626,0.96382,-118.96
> ui mousemode right "translate selected models"
> view matrix models
> #442,0.58841,0.7755,-0.22885,338.59,-0.76933,0.62406,0.1367,31.181,0.24882,0.095626,0.96382,-23.083
> view matrix models
> #442,0.58841,0.7755,-0.22885,245.44,-0.76933,0.62406,0.1367,183.38,0.24882,0.095626,0.96382,25.033
> view matrix models
> #442,0.58841,0.7755,-0.22885,235.25,-0.76933,0.62406,0.1367,202.83,0.24882,0.095626,0.96382,24.459
> ui mousemode right "rotate selected models"
> view matrix models
> #442,0.28415,0.94263,-0.17522,259.16,-0.92657,0.31696,0.20251,333.29,0.24643,0.10481,0.96348,22.286
> ui mousemode right "translate selected models"
> view matrix models
> #442,0.28415,0.94263,-0.17522,260.81,-0.92657,0.31696,0.20251,334.72,0.24643,0.10481,0.96348,22.287
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 388, shift = 46.2, angle = 16 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999785 0.00204013 0.00037370 -1.30861054
-0.00204010 0.99999792 -0.00008744 0.82031283
-0.00037388 0.00008668 0.99999993 0.16932203
Axis 0.04193739 0.18006350 -0.98276060
Axis point 407.93489720 640.35338149 0.00000000
Rotation angle (degrees) 0.11894030
Shift along axis -0.07357432
> hide #!415 models
> hide #!416 models
> hide #!417 models
> hide #!418 models
> select subtract #442
Nothing selected
> view orient
> ui mousemode right zoom
> turn z 20 models #442 center #15
> volume copy #424
Opened PflA.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #424
Opened PflA.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #424
Opened PflA.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at step 1, values float32
> volume #442 show
> show #!424 models
> hide #!445 models
> hide #!444 models
> hide #!443 models
> hide #!424 models
> show #!424 models
> close #443
> close #444-445
> select add #442
2 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #442,0.95334,0.3012,-0.020511,183.54,-0.30147,0.9534,-0.011965,-41.44,0.015952,0.017591,0.99972,99.509
> ui mousemode right "rotate selected models"
> view matrix models
> #442,0.067519,0.9977,0.0060815,236.83,-0.99765,0.067441,0.012294,488.54,0.011856,-0.0068973,0.99991,109.19
> ui mousemode right "translate selected models"
> view matrix models
> #442,0.067519,0.9977,0.0060815,234,-0.99765,0.067441,0.012294,544.61,0.011856,-0.0068973,0.99991,110.31
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 344, shift = 13, angle = 8.61 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999768 0.00211866 0.00042137 -1.36491191
-0.00211909 0.99999723 0.00104027 0.33512399
-0.00041917 -0.00104117 0.99999938 0.64196098
Axis -0.43403445 0.17527520 -0.88368134
Axis point 150.38330660 627.21888762 0.00000000
Rotation angle (degrees) 0.13738286
Shift along axis 0.08386878
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164.1
steps = 84, shift = 0.0409, angle = 0.023 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999804 0.00192831 0.00046286 -1.31818420
-0.00192863 0.99999791 0.00068885 0.36227265
-0.00046153 -0.00068974 0.99999967 0.49617320
Axis -0.32832147 0.22014933 -0.91855282
Axis point 180.62539926 674.11320309 0.00000000
Rotation angle (degrees) 0.12029035
Shift along axis 0.05678096
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164.1
steps = 28, shift = 0.0628, angle = 0.00872 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999808 0.00193183 0.00035710 -1.27650152
-0.00193211 0.99999783 0.00079835 0.38950545
-0.00035556 -0.00079904 0.99999963 0.51123020
Axis -0.37661676 0.16802276 -0.91100393
Axis point 193.86830794 645.28057425 0.00000000
Rotation angle (degrees) 0.12150753
Shift along axis 0.08046493
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9992, correlation about mean = 0.9994, overlap = 164
steps = 28, shift = 0.046, angle = 0.0166 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999807 0.00192285 0.00043515 -1.29162715
-0.00192308 0.99999803 0.00052028 0.43999516
-0.00043415 -0.00052112 0.99999978 0.47643284
Axis -0.25535975 0.21315954 -0.94305589
Axis point 230.94735618 675.36921336 0.00000000
Rotation angle (degrees) 0.11683065
Shift along axis -0.02568404
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 24, shift = 0.0463, angle = 0.017 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999810 0.00191301 0.00038556 -1.28530216
-0.00191332 0.99999785 0.00081294 0.30213299
-0.00038401 -0.00081367 0.99999961 0.56756304
Axis -0.38469140 0.18200212 -0.90492417
Axis point 153.75074052 664.82152947 0.00000000
Rotation angle (degrees) 0.12113333
Shift along axis 0.03583201
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9991, correlation about mean = 0.9993, overlap = 163.9
steps = 24, shift = 0.0219, angle = 0.00925 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999805 0.00193918 0.00039179 -1.29308049
-0.00193956 0.99999766 0.00097203 0.24254054
-0.00038991 -0.00097279 0.99999946 0.63249238
Axis -0.44111803 0.17730122 -0.87976085
Axis point 119.04865423 653.98068078 0.00000000
Rotation angle (degrees) 0.12630459
Shift along axis 0.05696181
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9991, correlation about mean = 0.9993, overlap = 163.9
steps = 28, shift = 0.0225, angle = 0.00439 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999797 0.00196663 0.00046013 -1.34594693
-0.00196707 0.99999762 0.00095076 0.26131145
-0.00045826 -0.00095167 0.99999945 0.64756747
Axis -0.42607012 0.20568465 -0.88099834
Axis point 126.09744861 672.23546367 0.00000000
Rotation angle (degrees) 0.12791454
Shift along axis 0.05670965
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9992, correlation about mean = 0.9994, overlap = 164.1
steps = 40, shift = 0.0889, angle = 0.00767 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999785 0.00200400 0.00054244 -1.35933020
-0.00200447 0.99999764 0.00085193 0.38378251
-0.00054073 -0.00085302 0.99999950 0.60933132
Axis -0.37983625 0.24131337 -0.89302423
Axis point 182.87583600 666.22413755 0.00000000
Rotation angle (degrees) 0.12859034
Shift along axis 0.06478709
> fitmap #442 inMap #393
Fit map Cage_top.mrc in map Cage-top-withPflA.mrc using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 40, shift = 0.0385, angle = 0.0166 degrees
Position of Cage_top.mrc (#442) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999817 0.00188173 0.00037922 -1.24175519
-0.00188197 0.99999803 0.00064664 0.38184199
-0.00037800 -0.00064735 0.99999973 0.49907726
Axis -0.31940046 0.18690567 -0.92900464
Axis point 201.76971381 659.36223853 0.00000000
Rotation angle (degrees) 0.11606205
Shift along axis 0.00434052
> hide #!424 models
> hide #!425 models
> hide #!426 models
> hide #!427 models
> hide #!428 models
> hide #!429 models
> hide #!430 models
> hide #!431 models
> hide #!432 models
> hide #!433 models
> hide #!434 models
> hide #!435 models
> hide #!436 models
> hide #!437 models
> hide #!438 models
> hide #!439 models
> hide #!440 models
> hide #!441 models
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #443, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #444, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #445, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #446, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #447, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #448, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #449, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #450, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #451, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #452, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #453, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #454, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #455, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #456, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #457, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #458, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #459, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> turn z 20 models #442 center #15
> volume copy #442
Opened Cage_top.mrc copy as #460, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #442 show
> surface dust #442 size 25.78
> surface dust #443 size 25.78
> surface dust #444 size 25.78
> surface dust #445 size 25.78
> surface dust #446 size 25.78
> surface dust #447 size 25.78
> surface dust #448 size 25.78
> surface dust #449 size 25.78
> surface dust #450 size 25.78
> surface dust #451 size 25.78
> surface dust #452 size 25.78
> surface dust #453 size 25.78
> surface dust #454 size 25.78
> surface dust #455 size 25.78
> surface dust #456 size 25.78
> surface dust #457 size 25.78
> surface dust #458 size 25.78
> surface dust #459 size 25.78
> surface dust #460 size 25.78
> select subtract #442
Nothing selected
> show #!394 models
> fitmap #443 inMap #394
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164
steps = 48, shift = 2.05, angle = 0.414 degrees
Position of Cage_top.mrc copy (#443) relative to Cage-top-withPflA.mrc copy
(#394) coordinates:
Matrix rotation and translation
0.99999819 0.00184250 0.00050625 -1.29339117
-0.00184262 0.99999829 0.00023707 0.52743490
-0.00050582 -0.00023800 0.99999986 0.39283575
Axis -0.12336218 0.26280845 -0.95692920
Axis point 296.66762601 707.47482169 0.00000000
Rotation angle (degrees) 0.11032278
Shift along axis -0.07774609
> show #!395 models
> fitmap #444 inMap #395
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 64, shift = 4.07, angle = 0.852 degrees
Position of Cage_top.mrc copy (#444) relative to Cage-top-withPflA.mrc copy
(#395) coordinates:
Matrix rotation and translation
0.99999814 0.00187406 0.00047737 -1.28956302
-0.00187427 0.99999817 0.00043567 0.46895590
-0.00047656 -0.00043656 0.99999981 0.45276468
Axis -0.21998568 0.24059094 -0.94536887
Axis point 253.56930982 692.06365531 0.00000000
Rotation angle (degrees) 0.11358731
Shift along axis -0.03151769
> show #!396 models
> hide #!445 models
> show #!445 models
> fitmap #445 inMap #396
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9994, overlap = 164
steps = 108, shift = 6.27, angle = 1.25 degrees
Position of Cage_top.mrc copy (#445) relative to Cage-top-withPflA.mrc copy
(#396) coordinates:
Matrix rotation and translation
0.99999820 0.00185184 0.00045972 -1.28589164
-0.00185201 0.99999824 0.00036191 0.47721704
-0.00045905 -0.00036276 0.99999985 0.41752362
Axis -0.18656399 0.23653343 -0.95354382
Axis point 262.79540036 699.21328474 0.00000000
Rotation angle (degrees) 0.11127689
Shift along axis -0.04534821
> fitmap #445 inMap #396
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 28, shift = 0.00998, angle = 0.0054 degrees
Position of Cage_top.mrc copy (#445) relative to Cage-top-withPflA.mrc copy
(#396) coordinates:
Matrix rotation and translation
0.99999817 0.00186765 0.00044989 -1.29522936
-0.00186785 0.99999817 0.00045426 0.44773459
-0.00044905 -0.00045510 0.99999981 0.44805289
Axis -0.23031779 0.22767875 -0.94610576
Axis point 241.89954768 696.66442306 0.00000000
Rotation angle (degrees) 0.11311019
Shift along axis -0.02365140
> show #!397 models
> hide #!397 models
> show #!397 models
> hide #!446 models
> show #!446 models
> hide #!447 models
> hide #!448 models
> hide #!449 models
> hide #!450 models
> hide #!451 models
> hide #!452 models
> hide #!453 models
> hide #!454 models
> hide #!455 models
> hide #!456 models
> hide #!457 models
> hide #!458 models
> hide #!459 models
> hide #!460 models
> fitmap #446 inMap #397
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 108, shift = 8.69, angle = 1.59 degrees
Position of Cage_top.mrc copy (#446) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999831 0.00178293 0.00049576 -1.27064264
-0.00178290 0.99999843 -0.00006375 0.66993147
-0.00049588 0.00006286 0.99999990 0.25504800
Axis 0.03418759 0.26777144 -0.96287573
Axis point 391.58465423 710.94452364 0.00000000
Rotation angle (degrees) 0.10609218
Shift along axis -0.10963122
> show #!398 models
> show #!447 models
> fitmap #447 inMap #398
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 148, shift = 11.4, angle = 1.92 degrees
Position of Cage_top.mrc copy (#447) relative to Cage-top-withPflA.mrc copy
(#398) coordinates:
Matrix rotation and translation
0.99999827 0.00181183 0.00046145 -1.26620265
-0.00181193 0.99999836 0.00021041 0.55863521
-0.00046107 -0.00021125 0.99999990 0.34956198
Axis -0.11205261 0.24515020 -0.96298785
Axis point 315.48324786 702.72975970 0.00000000
Rotation angle (degrees) 0.10780334
Shift along axis -0.05779309
> show #!399 models
> show #!448 models
> fitmap #448 inMap #399
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 144, shift = 14.1, angle = 2.17 degrees
Position of Cage_top.mrc copy (#448) relative to Cage-top-withPflA.mrc copy
(#399) coordinates:
Matrix rotation and translation
0.99999820 0.00186430 0.00041883 -1.26883186
-0.00186441 0.99999825 0.00026801 0.54510126
-0.00041833 -0.00026879 0.99999990 0.35971963
Axis -0.13910363 0.21693536 -0.96622421
Axis point 297.86576145 684.82683478 0.00000000
Rotation angle (degrees) 0.11055387
Shift along axis -0.05281896
> show #!400 models
> show #!449 models
> fitmap #449 inMap #400
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 140, shift = 16.5, angle = 2.36 degrees
Position of Cage_top.mrc copy (#449) relative to Cage-top-withPflA.mrc copy
(#400) coordinates:
Matrix rotation and translation
0.99999814 0.00189532 0.00043116 -1.28567646
-0.00189545 0.99999819 0.00029790 0.54192788
-0.00043060 -0.00029871 0.99999989 0.37623440
Axis -0.15169370 0.21910874 -0.96383628
Axis point 290.89492347 682.54253348 0.00000000
Rotation angle (degrees) 0.11267232
Shift along axis -0.04885821
> show #!450 models
> show #!401 models
> fitmap #450 inMap #401
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9994, overlap = 164.1
steps = 160, shift = 18.4, angle = 2.49 degrees
Position of Cage_top.mrc copy (#450) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999756 0.00219056 0.00036176 -1.36956312
-0.00219080 0.99999741 0.00067295 0.53211674
-0.00036029 -0.00067374 0.99999974 0.47479308
Axis -0.29022319 0.15560824 -0.94422274
Axis point 239.87128554 621.24609319 0.00000000
Rotation angle (degrees) 0.13293137
Shift along axis 0.03197029
> fitmap #450 inMap #401
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 28, shift = 0.0593, angle = 0.0125 degrees
Position of Cage_top.mrc copy (#450) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999793 0.00199915 0.00045680 -1.30275230
-0.00199943 0.99999783 0.00063025 0.43025735
-0.00045554 -0.00063116 0.99999973 0.52349233
Axis -0.29396949 0.21262175 -0.93186583
Axis point 215.89304041 653.84775984 0.00000000
Rotation angle (degrees) 0.12292649
Shift along axis -0.01337312
> show #!402 models
> show #!451 models
> fitmap #451 inMap #402
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 148, shift = 19.4, angle = 2.52 degrees
Position of Cage_top.mrc copy (#451) relative to Cage-top-withPflA.mrc copy
(#402) coordinates:
Matrix rotation and translation
0.99999749 0.00222890 0.00033784 -1.36876556
-0.00222911 0.99999737 0.00060612 0.52247509
-0.00033649 -0.00060687 0.99999979 0.46602976
Axis -0.25979425 0.14442648 -0.95480257
Axis point 234.55168017 615.98749854 0.00000000
Rotation angle (degrees) 0.13375813
Shift along axis -0.01390975
> show #!452 models
> show #!403 models
> fitmap #452 inMap #403
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.999, correlation about mean = 0.9993, overlap = 163.9
steps = 152, shift = 19.5, angle = 2.49 degrees
Position of Cage_top.mrc copy (#452) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999704 0.00242733 0.00031103 -1.43598351
-0.00242772 0.99999631 0.00125217 0.30338645
-0.00030800 -0.00125292 0.99999921 0.70916579
Axis -0.45562048 0.11258733 -0.88302552
Axis point 121.19106473 580.06102728 0.00000000
Rotation angle (degrees) 0.15751225
Shift along axis 0.06220947
> fitmap #452 inMap #403
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9991, correlation about mean = 0.9993, overlap = 163.9
steps = 28, shift = 0.0246, angle = 0.0215 degrees
Position of Cage_top.mrc copy (#452) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999780 0.00207744 0.00038801 -1.33850816
-0.00207797 0.99999695 0.00136376 0.11687733
-0.00038518 -0.00136456 0.99999903 0.79016647
Axis -0.54232292 0.15369085 -0.82599332
Axis point 48.57852748 620.55114796 0.00000000
Rotation angle (degrees) 0.14412219
Shift along axis 0.09119440
> fitmap #452 inMap #403
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 36, shift = 0.128, angle = 0.0241 degrees
Position of Cage_top.mrc copy (#452) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999795 0.00199894 0.00041482 -1.31744262
-0.00199933 0.99999759 0.00095224 0.33118955
-0.00041291 -0.00095307 0.99999950 0.60387929
Axis -0.42286632 0.18370606 -0.88737600
Axis point 157.32152766 641.87287736 0.00000000
Rotation angle (degrees) 0.12907949
Shift along axis 0.08207565
> fitmap #452 inMap #403
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 40, shift = 0.0368, angle = 0.0148 degrees
Position of Cage_top.mrc copy (#452) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999807 0.00192631 0.00045961 -1.31885496
-0.00192664 0.99999793 0.00070817 0.38668805
-0.00045825 -0.00070906 0.99999968 0.56954921
Axis -0.33689925 0.21819174 -0.91591007
Axis point 199.16177075 683.62505882 0.00000000
Rotation angle (degrees) 0.12051281
Shift along axis 0.00703752
> show #!404 models
> show #!453 models
> fitmap #453 inMap #404
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 152, shift = 18.6, angle = 2.36 degrees
Position of Cage_top.mrc copy (#453) relative to Cage-top-withPflA.mrc copy
(#404) coordinates:
Matrix rotation and translation
0.99999750 0.00224641 0.00019258 -1.32796345
-0.00224655 0.99999722 0.00076743 0.51779687
-0.00019086 -0.00076786 0.99999973 0.44653398
Axis -0.32230483 0.08049483 -0.94320739
Axis point 228.01359439 584.44746397 0.00000000
Rotation angle (degrees) 0.13646409
Shift along axis 0.04851487
> show #!454 models
> show #!405 models
> fitmap #454 inMap #405
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 136, shift = 16.8, angle = 2.17 degrees
Position of Cage_top.mrc copy (#454) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999814 0.00194922 0.00003910 -1.14141660
-0.00194923 0.99999807 0.00038915 0.52725109
-0.00003835 -0.00038922 0.99999997 0.26772601
Axis -0.19575945 0.01947846 -0.98045848
Axis point 270.18275919 588.73112895 0.00000000
Rotation angle (degrees) 0.11390831
Shift along axis -0.02878111
> show #!406 models
> show #!455 models
> fitmap #455 inMap #406
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9991, correlation about mean = 0.9993, overlap = 163.9
steps = 160, shift = 14.3, angle = 1.92 degrees
Position of Cage_top.mrc copy (#455) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999754 0.00220039 0.00040702 -1.39314686
-0.00220092 0.99999678 0.00130103 0.20673614
-0.00040415 -0.00130193 0.99999912 0.75761106
Axis -0.50275873 0.15667693 -0.85010940
Axis point 86.70323415 612.95505687 0.00000000
Rotation angle (degrees) 0.14832026
Shift along axis 0.08875525
> show #!456 models
> show #!407 models
> fitmap #456 inMap #407
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9991, correlation about mean = 0.9993, overlap = 164
steps = 136, shift = 11.4, angle = 1.61 degrees
Position of Cage_top.mrc copy (#456) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999774 0.00210505 0.00043091 -1.36379429
-0.00210551 0.99999726 0.00107132 0.31514869
-0.00042866 -0.00107222 0.99999938 0.65785017
Axis -0.44635267 0.17899046 -0.87677346
Axis point 141.33283866 629.28795477 0.00000000
Rotation angle (degrees) 0.13757691
Shift along axis 0.08835627
> show #!408 models
> show #!457 models
> fitmap #457 inMap #408
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9993, correlation about mean = 0.9994, overlap = 164.1
steps = 84, shift = 8.27, angle = 1.26 degrees
Position of Cage_top.mrc copy (#457) relative to Cage-top-withPflA.mrc copy
(#408) coordinates:
Matrix rotation and translation
0.99999812 0.00191713 0.00041847 -1.28900885
-0.00191739 0.99999802 0.00062291 0.41826118
-0.00041728 -0.00062371 0.99999977 0.45245649
Axis -0.30274242 0.20296306 -0.93121051
Axis point 211.74270213 664.08213059 0.00000000
Rotation angle (degrees) 0.11796563
Shift along axis 0.05379699
> show #!458 models
> show #!409 models
> fitmap #458 inMap #409
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9991, correlation about mean = 0.9993, overlap = 163.9
steps = 108, shift = 5.1, angle = 0.839 degrees
Position of Cage_top.mrc copy (#458) relative to Cage-top-withPflA.mrc copy
(#409) coordinates:
Matrix rotation and translation
0.99999773 0.00211186 0.00041543 -1.36203692
-0.00211236 0.99999708 0.00122044 0.21324040
-0.00041285 -0.00122131 0.99999922 0.72798953
Axis -0.49338693 0.16736387 -0.85355649
Axis point 93.22934725 624.88349564 0.00000000
Rotation angle (degrees) 0.14177741
Shift along axis 0.08631977
> show #!410 models
> show #!459 models
> fitmap #459 inMap #410
Fit map Cage_top.mrc copy in map Cage-top-withPflA.mrc copy using 49433 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 164
steps = 80, shift = 2.38, angle = 0.419 degrees
Position of Cage_top.mrc copy (#459) relative to Cage-top-withPflA.mrc copy
(#410) coordinates:
Matrix rotation and translation
0.99999784 0.00206004 0.00043553 -1.34870495
-0.00206050 0.99999737 0.00106312 0.29939020
-0.00043334 -0.00106401 0.99999940 0.65756848
Axis -0.45086590 0.18416338 -0.87338640
Axis point 136.52436391 635.38720045 0.00000000
Rotation angle (degrees) 0.13515753
Shift along axis 0.08891042
> close #460
> save "/Users/shoichitachiyama/OneDrive - Yale
> University/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/updated-
> Using_PilNO_maps.cxs" includeMaps true
[Repeated 1 time(s)]
——— End of log from Sun Aug 13 12:17:20 2023 ———
opened ChimeraX session
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/Using_previous-map-
> Cage-Top-withPflA/MotB_PG.mrc
Opened MotB_PG.mrc as #460, grid size 160,160,200, pixel 4.3,4.3,4.3, shown at
level 0.00707, step 1, values float32
> hide #!423 models
> select add #460
2 models selected
> ui mousemode right "translate selected models"
> hide #!442 models
> ui windowfill toggle
[Repeated 3 time(s)]
> ui tool show "Command Line Interface"
> hide #!442-459 models
> hide #!393 models
> hide #!394 models
> hide #!395 models
> hide #!396 models
> hide #!397 models
> hide #!398 models
> hide #!399 models
> hide #!400 models
> hide #!401 models
> hide #!402 models
> hide #!403 models
> hide #!409 models
> hide #!408 models
> hide #!410 models
> hide #!407 models
> hide #!406 models
> hide #!405 models
> hide #!404 models
> show #!408 models
> ui mousemode right "rotate selected models"
> view matrix models
> #460,-0.43004,0.86534,0.25739,82.845,-0.77846,-0.49981,0.37972,615.79,0.45723,-0.037067,0.88857,-95.871
> view matrix models
> #460,-0.62797,0.77562,-0.063818,318.39,-0.77794,-0.62788,0.023909,811.45,-0.021526,0.064661,0.99768,-13.738
> ui tool show "Hide Dust"
> surface dust #15 size 4.3
> surface dust #460 size 25.78
> ui mousemode right "translate selected models"
> view matrix models
> #460,-0.62797,0.77562,-0.063818,254.8,-0.77794,-0.62788,0.023909,787.27,-0.021526,0.064661,0.99768,4.2205
> view matrix models
> #460,-0.62797,0.77562,-0.063818,304.29,-0.77794,-0.62788,0.023909,772.05,-0.021526,0.064661,0.99768,71.285
> view matrix models
> #460,-0.62797,0.77562,-0.063818,274.31,-0.77794,-0.62788,0.023909,794.83,-0.021526,0.064661,0.99768,76.474
> view matrix models
> #460,-0.62797,0.77562,-0.063818,273.27,-0.77794,-0.62788,0.023909,791.43,-0.021526,0.064661,0.99768,99.41
> ui tool show "Fit in Map"
> fitmap #460 inMap #408
Fit map MotB_PG.mrc in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.991, correlation about mean = 0.9946, overlap = 38.35
steps = 1144, shift = 14.8, angle = 9.47 degrees
Position of MotB_PG.mrc (#460) relative to Cage-top-withPflA.mrc copy (#408)
coordinates:
Matrix rotation and translation
0.99999831 -0.00049012 0.00177444 0.94145823
0.00049076 0.99999982 -0.00035846 0.10299590
-0.00177427 0.00035933 0.99999836 -0.20523552
Axis 0.19135676 0.94604678 0.26149201
Axis point -148.20765889 0.00000000 -506.55804770
Rotation angle (degrees) 0.10746113
Shift along axis 0.22392589
> color #408 #b7916a84 models
> fitmap #460 inMap #408
Fit map MotB_PG.mrc in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 44, shift = 0.137, angle = 0.0226 degrees
Position of MotB_PG.mrc (#460) relative to Cage-top-withPflA.mrc copy (#408)
coordinates:
Matrix rotation and translation
0.99999858 -0.00031428 0.00165370 0.94485884
0.00031433 0.99999995 -0.00002713 -0.05303431
-0.00165370 0.00002765 0.99999863 -0.08902868
Axis 0.01626845 0.98228343 0.18669385
Axis point -47.34088219 0.00000000 -571.92475437
Rotation angle (degrees) 0.09645893
Shift along axis -0.05334444
> fitmap #460 inMap #408
Fit map MotB_PG.mrc in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.37
steps = 28, shift = 0.0814, angle = 0.00118 degrees
Position of MotB_PG.mrc (#460) relative to Cage-top-withPflA.mrc copy (#408)
coordinates:
Matrix rotation and translation
0.99999857 -0.00030139 0.00166247 0.91912377
0.00030142 0.99999996 -0.00001371 0.01683584
-0.00166247 0.00001421 0.99999862 -0.12006073
Axis 0.00826196 0.98392606 0.17838512
Axis point -72.05302969 0.00000000 -552.91446802
Rotation angle (degrees) 0.09680856
Shift along axis 0.00274194
> fitmap #460 inMap #408
Fit map MotB_PG.mrc in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9947, overlap = 38.37
steps = 40, shift = 0.0215, angle = 0.00214 degrees
Position of MotB_PG.mrc (#460) relative to Cage-top-withPflA.mrc copy (#408)
coordinates:
Matrix rotation and translation
0.99999856 -0.00029705 0.00167041 0.91922143
0.00029713 0.99999996 -0.00004994 0.04446735
-0.00167039 0.00005043 0.99999860 -0.11494297
Axis 0.02956644 0.98411910 0.17502978
Axis point -73.67783585 0.00000000 -549.46184745
Rotation angle (degrees) 0.09725132
Shift along axis 0.05082083
> fitmap #460 inMap #408
Fit map MotB_PG.mrc in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0852, angle = 0.0089 degrees
Position of MotB_PG.mrc (#460) relative to Cage-top-withPflA.mrc copy (#408)
coordinates:
Matrix rotation and translation
0.99999866 -0.00023987 0.00162098 0.92707407
0.00023973 0.99999997 0.00008562 -0.05609639
-0.00162100 -0.00008523 0.99999868 -0.06991000
Axis -0.05206200 0.98789230 0.14614497
Axis point -32.39695134 0.00000000 -568.29076595
Rotation angle (degrees) 0.09401421
Shift along axis -0.11389952
> select subtract #460
Nothing selected
> view orient
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #461, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #462, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #463, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #464, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #465, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #466, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #467, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #468, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #469, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #470, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #471, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #472, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #473, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #474, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #475, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #476, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #477, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> turn z 20 models #460 center #15
> volume copy #460
Opened MotB_PG.mrc copy as #478, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #460 show
> surface dust #461 size 25.78
> surface dust #462 size 25.78
> surface dust #463 size 25.78
> surface dust #464 size 25.78
[Repeated 1 time(s)]
> surface dust #465 size 25.78
> surface dust #467 size 25.78
> surface dust #468 size 25.78
> surface dust #466 size 25.78
> surface dust #469 size 25.78
> surface dust #470 size 25.78
[Repeated 1 time(s)]
> surface dust #471 size 25.78
> surface dust #472 size 25.78
[Repeated 1 time(s)]
> surface dust #473 size 25.78
> surface dust #474 size 25.78
> surface dust #475 size 25.78
> surface dust #476 size 25.78
> surface dust #477 size 25.78
[Repeated 1 time(s)]
> surface dust #478 size 25.78
> show #!409 models
> hide #!460 models
> hide #!461 models
> show #!461 models
> fitmap #461 inMap #409
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 84, shift = 7.03, angle = 1.37 degrees
Position of MotB_PG.mrc copy (#461) relative to Cage-top-withPflA.mrc copy
(#409) coordinates:
Matrix rotation and translation
0.99999858 -0.00032250 0.00165352 0.94358560
0.00032255 0.99999995 -0.00002695 -0.03656193
-0.00165352 0.00002748 0.99999863 -0.09842146
Axis 0.01615191 0.98137512 0.19142099
Axis point -54.47974753 0.00000000 -571.08299277
Rotation angle (degrees) 0.09653786
Shift along axis -0.03948020
> fitmap #461 inMap #409
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0274, angle = 0.00915 degrees
Position of MotB_PG.mrc copy (#461) relative to Cage-top-withPflA.mrc copy
(#409) coordinates:
Matrix rotation and translation
0.99999865 -0.00022107 0.00162658 0.90946577
0.00022091 0.99999997 0.00009323 -0.01375629
-0.00162660 -0.00009287 0.99999867 -0.08486032
Axis -0.05659595 0.98930841 0.13440893
Axis point -45.39602826 0.00000000 -556.50438855
Rotation angle (degrees) 0.09420390
Shift along axis -0.07648728
> fitmap #461 inMap #409
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0234, angle = 0.0083 degrees
Position of MotB_PG.mrc copy (#461) relative to Cage-top-withPflA.mrc copy
(#409) coordinates:
Matrix rotation and translation
0.99999854 -0.00028249 0.00168472 0.90577029
0.00028253 0.99999996 -0.00002420 0.01718990
-0.00168471 0.00002468 0.99999858 -0.11322662
Axis 0.01430622 0.98612892 0.16536348
Axis point -67.85339073 0.00000000 -537.60319688
Rotation angle (degrees) 0.09788479
Shift along axis 0.01118606
> fitmap #461 inMap #409
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 44, shift = 0.023, angle = 0.0103 degrees
Position of MotB_PG.mrc copy (#461) relative to Cage-top-withPflA.mrc copy
(#409) coordinates:
Matrix rotation and translation
0.99999867 -0.00021445 0.00161463 0.91130817
0.00021425 0.99999997 0.00012611 -0.02097685
-0.00161466 -0.00012577 0.99999869 -0.07990651
Axis -0.07708978 0.98835302 0.13120778
Axis point -40.78829975 0.00000000 -559.59629100
Rotation angle (degrees) 0.09360239
Shift along axis -0.10146943
> fitmap #461 inMap #409
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 40, shift = 0.044, angle = 0.00787 degrees
Position of MotB_PG.mrc copy (#461) relative to Cage-top-withPflA.mrc copy
(#409) coordinates:
Matrix rotation and translation
0.99999861 -0.00027944 0.00164322 0.93458548
0.00027942 0.99999996 0.00000862 -0.04611873
-0.00164322 -0.00000816 0.99999865 -0.08451814
Axis -0.00503521 0.98583514 0.16764167
Axis point -44.40321982 0.00000000 -568.59262065
Rotation angle (degrees) 0.09550251
Shift along axis -0.06434006
> fitmap #461 inMap #409
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 36, shift = 0.00411, angle = 0.000325 degrees
Position of MotB_PG.mrc copy (#461) relative to Cage-top-withPflA.mrc copy
(#409) coordinates:
Matrix rotation and translation
0.99999860 -0.00028494 0.00164461 0.93640924
0.00028492 0.99999996 0.00000867 -0.05139930
-0.00164461 -0.00000821 0.99999865 -0.08143463
Axis -0.00505667 0.98530908 0.17070574
Axis point -41.85685572 0.00000000 -569.20382867
Rotation angle (degrees) 0.09563417
Shift along axis -0.06928067
> show #!410 models
> fitmap #462 inMap #410
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9947, overlap = 38.36
steps = 136, shift = 13.7, angle = 2.7 degrees
Position of MotB_PG.mrc copy (#462) relative to Cage-top-withPflA.mrc copy
(#410) coordinates:
Matrix rotation and translation
0.99999846 -0.00035438 0.00171299 0.91489376
0.00035466 0.99999992 -0.00016790 0.08076408
-0.00171293 0.00016851 0.99999852 -0.14624201
Axis 0.09571552 0.97475150 0.20173759
Axis point -101.03051298 0.00000000 -526.53879091
Rotation angle (degrees) 0.10068760
Shift along axis 0.13679193
> fitmap #462 inMap #410
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.108, angle = 0.0138 degrees
Position of MotB_PG.mrc copy (#462) relative to Cage-top-withPflA.mrc copy
(#410) coordinates:
Matrix rotation and translation
0.99999862 -0.00026161 0.00163582 0.92951946
0.00026154 0.99999996 0.00004124 -0.04754990
-0.00163583 -0.00004081 0.99999866 -0.07873396
Axis -0.02475781 0.98715281 0.15784923
Axis point -39.71762684 0.00000000 -567.01574375
Rotation angle (degrees) 0.09494559
Shift along axis -0.08237999
> fitmap #462 inMap #410
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.37
steps = 40, shift = 0.0775, angle = 0.00752 degrees
Position of MotB_PG.mrc copy (#462) relative to Cage-top-withPflA.mrc copy
(#410) coordinates:
Matrix rotation and translation
0.99999854 -0.00031232 0.00167981 0.91752969
0.00031244 0.99999995 -0.00007140 0.03567663
-0.00167979 0.00007192 0.99999858 -0.13115391
Axis 0.04190401 0.98228092 0.18266977
Axis point -83.00551413 0.00000000 -545.04529494
Rotation angle (degrees) 0.09798185
Shift along axis 0.04953479
> fitmap #462 inMap #410
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.46
steps = 28, shift = 0.0973, angle = 0.00112 degrees
Position of MotB_PG.mrc copy (#462) relative to Cage-top-withPflA.mrc copy
(#410) coordinates:
Matrix rotation and translation
0.99999852 -0.00031494 0.00168960 0.92563903
0.00031503 0.99999995 -0.00005473 -0.05944191
-0.00168959 0.00005526 0.99999857 -0.08451419
Axis 0.03198034 0.98256023 0.18317384
Axis point -44.75557304 0.00000000 -548.72050860
Rotation angle (degrees) 0.09852509
Shift along axis -0.04428379
> fitmap #462 inMap #410
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9948, overlap = 38.38
steps = 28, shift = 0.112, angle = 0.00222 degrees
Position of MotB_PG.mrc copy (#462) relative to Cage-top-withPflA.mrc copy
(#410) coordinates:
Matrix rotation and translation
0.99999857 -0.00030358 0.00165859 0.89939246
0.00030364 0.99999995 -0.00003440 0.04584907
-0.00165858 0.00003491 0.99999862 -0.09131865
Axis 0.02054937 0.98344775 0.18002289
Axis point -59.72460490 0.00000000 -541.72968692
Rotation angle (degrees) 0.09662953
Shift along axis 0.04713266
> show #!393 models
> fitmap #463 inMap #393
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 252, shift = 20.5, angle = 3.93 degrees
Position of MotB_PG.mrc copy (#463) relative to Cage-top-withPflA.mrc (#393)
coordinates:
Matrix rotation and translation
0.99999868 -0.00022360 0.00160309 0.93130348
0.00022340 0.99999996 0.00012588 -0.07883808
-0.00160312 -0.00012552 0.99999870 -0.05654859
Axis -0.07742844 0.98744730 0.13766868
Axis point -21.26548562 0.00000000 -573.34105503
Rotation angle (degrees) 0.09301880
Shift along axis -0.15774280
> show #!394 models
> fitmap #464 inMap #394
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.41
steps = 496, shift = 28.1, angle = 5.05 degrees
Position of MotB_PG.mrc copy (#464) relative to Cage-top-withPflA.mrc copy
(#394) coordinates:
Matrix rotation and translation
0.99999864 -0.00021211 0.00163116 0.90571532
0.00021193 0.99999996 0.00010826 -0.03160196
-0.00163118 -0.00010791 0.99999866 -0.06965032
Axis -0.06556954 0.98952412 0.12861822
Axis point -34.39297983 0.00000000 -551.28296463
Rotation angle (degrees) 0.09444864
Shift along axis -0.09961653
> fitmap #464 inMap #394
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 48, shift = 0.0289, angle = 0.00783 degrees
Position of MotB_PG.mrc copy (#464) relative to Cage-top-withPflA.mrc copy
(#394) coordinates:
Matrix rotation and translation
0.99999860 -0.00030281 0.00163765 0.94616303
0.00030280 0.99999995 0.00000637 -0.05712243
-0.00163766 -0.00000587 0.99999865 -0.08613115
Axis -0.00367605 0.98332475 0.18182111
Axis point -43.76007440 0.00000000 -577.62349423
Rotation angle (degrees) 0.09542189
Shift along axis -0.07530850
> fitmap #464 inMap #394
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 36, shift = 0.0113, angle = 0.00206 degrees
Position of MotB_PG.mrc copy (#464) relative to Cage-top-withPflA.mrc copy
(#394) coordinates:
Matrix rotation and translation
0.99999856 -0.00029795 0.00166480 0.92812486
0.00029798 0.99999995 -0.00001668 -0.04470733
-0.00166480 0.00001717 0.99999861 -0.09017368
Axis 0.01000734 0.98430881 0.17617043
Axis point -48.34556751 0.00000000 -557.84348698
Rotation angle (degrees) 0.09690676
Shift along axis -0.05060369
> fitmap #464 inMap #394
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.41
steps = 40, shift = 0.0391, angle = 0.00761 degrees
Position of MotB_PG.mrc copy (#464) relative to Cage-top-withPflA.mrc copy
(#394) coordinates:
Matrix rotation and translation
0.99999849 -0.00036941 0.00168924 0.94798441
0.00036962 0.99999992 -0.00012577 -0.00200079
-0.00168920 0.00012640 0.99999856 -0.12861146
Axis 0.07272257 0.97431402 0.21312819
Axis point -80.65614456 0.00000000 -559.55567789
Rotation angle (degrees) 0.09933689
Shift along axis 0.03957974
> fitmap #464 inMap #394
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 48, shift = 0.0357, angle = 0.00581 degrees
Position of MotB_PG.mrc copy (#464) relative to Cage-top-withPflA.mrc copy
(#394) coordinates:
Matrix rotation and translation
0.99999856 -0.00032087 0.00165706 0.94478903
0.00032094 0.99999994 -0.00004292 -0.04015712
-0.00165705 0.00004345 0.99999862 -0.09728718
Axis 0.02557699 0.98143861 0.19006333
Axis point -54.36820500 0.00000000 -570.72616465
Rotation angle (degrees) 0.09673797
Shift along axis -0.03373762
> fitmap #464 inMap #394
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 40, shift = 0.0287, angle = 0.0115 degrees
Position of MotB_PG.mrc copy (#464) relative to Cage-top-withPflA.mrc copy
(#394) coordinates:
Matrix rotation and translation
0.99999868 -0.00022529 0.00159999 0.93186870
0.00022510 0.99999996 0.00012373 -0.08137349
-0.00160002 -0.00012337 0.99999871 -0.05906991
Axis -0.07623971 0.98735795 0.13896687
Axis point -22.59397769 0.00000000 -574.83517289
Rotation angle (degrees) 0.09284728
Shift along axis -0.15959892
> show #!395 models
> fitmap #465 inMap #395
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.37
steps = 816, shift = 36.2, angle = 6.02 degrees
Position of MotB_PG.mrc copy (#465) relative to Cage-top-withPflA.mrc copy
(#395) coordinates:
Matrix rotation and translation
0.99999868 -0.00020318 0.00160328 0.91011225
0.00020296 0.99999996 0.00013887 -0.00724663
-0.00160331 -0.00013855 0.99999870 -0.08576967
Axis -0.08551686 0.98843974 0.12519487
Axis point -45.56596483 0.00000000 -562.58816294
Rotation angle (degrees) 0.09293627
Shift along axis -0.09573072
> fitmap #465 inMap #395
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0533, angle = 0.00717 degrees
Position of MotB_PG.mrc copy (#465) relative to Cage-top-withPflA.mrc copy
(#395) coordinates:
Matrix rotation and translation
0.99999862 -0.00027733 0.00163036 0.93688109
0.00027726 0.99999995 0.00004193 -0.05142726
-0.00163037 -0.00004148 0.99999866 -0.08119471
Axis -0.02520784 0.98552942 0.16761957
Axis point -40.29564248 0.00000000 -573.32139701
Rotation angle (degrees) 0.09478470
Shift along axis -0.08790964
> show #!396 models
> fitmap #466 inMap #396
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 1236, shift = 44.3, angle = 6.8 degrees
Position of MotB_PG.mrc copy (#466) relative to Cage-top-withPflA.mrc copy
(#396) coordinates:
Matrix rotation and translation
0.99999868 -0.00021218 0.00160244 0.92631129
0.00021196 0.99999996 0.00013472 -0.07384651
-0.00160248 -0.00013438 0.99999870 -0.05507210
Axis -0.08295414 0.98793966 0.13074342
Axis point -21.09784779 0.00000000 -569.95082343
Rotation angle (degrees) 0.09293506
Shift along axis -0.15699756
> show #!397 models
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.41
steps = 1396, shift = 51.5, angle = 7.38 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999857 -0.00024242 0.00166090 0.90699389
0.00024226 0.99999995 0.00009596 -0.05924669
-0.00166092 -0.00009556 0.99999860 -0.09028881
Axis -0.05695794 0.98791569 0.14414706
Axis point -43.21642001 0.00000000 -541.89787485
Rotation angle (degrees) 0.09632721
Shift along axis -0.12320610
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.45
steps = 48, shift = 0.0558, angle = 0.00267 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999863 -0.00025821 0.00162152 0.93834586
0.00025809 0.99999995 0.00007677 -0.07664201
-0.00162154 -0.00007635 0.99999867 -0.06050126
Axis -0.04657760 0.98649162 0.15705034
Axis point -24.36777369 0.00000000 -575.00330257
Rotation angle (degrees) 0.09417902
Shift along axis -0.12881434
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.37
steps = 40, shift = 0.0997, angle = 0.00992 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999851 -0.00031262 0.00168499 0.91951210
0.00031275 0.99999993 -0.00007474 0.03587918
-0.00168497 0.00007526 0.99999856 -0.12977295
Axis 0.04372236 0.98227386 0.18228114
Axis point -82.16120617 0.00000000 -544.43455121
Rotation angle (degrees) 0.09828456
Shift along axis 0.05179125
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0183, angle = 0.00452 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999856 -0.00027175 0.00166353 0.91151908
0.00027177 0.99999995 -0.00001093 0.01529965
-0.00166353 0.00001139 0.99999860 -0.11005344
Axis 0.00662075 0.98689595 0.16122203
Axis point -66.02928643 0.00000000 -547.98362298
Rotation angle (degrees) 0.09657912
Shift along axis 0.00339107
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00469, angle = 0.00207 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999858 -0.00026158 0.00165118 0.91300871
0.00026155 0.99999995 0.00002147 0.00519471
-0.00165119 -0.00002104 0.99999862 -0.10309862
Axis -0.01271041 0.98760453 0.15644726
Axis point -59.84078243 0.00000000 -552.81796087
Rotation angle (degrees) 0.09579357
Shift along axis -0.02260389
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00355, angle = 0.0015 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999860 -0.00025113 0.00164441 0.91211615
0.00025105 0.99999995 0.00004455 -0.00103813
-0.00164443 -0.00004414 0.99999863 -0.09707060
Axis -0.02664744 0.98819137 0.15088979
Axis point -54.90590668 0.00000000 -554.07426840
Rotation angle (degrees) 0.09534416
Shift along axis -0.03997839
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00151, angle = 0.0004 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999860 -0.00024788 0.00164470 0.91113387
0.00024779 0.99999995 0.00005072 -0.00298295
-0.00164471 -0.00005031 0.99999863 -0.09424761
Axis -0.03035697 0.98838079 0.14893576
Axis point -52.80538937 0.00000000 -553.20316166
Rotation angle (degrees) 0.09534241
Shift along axis -0.04464439
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00131, angle = 0.00132 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999858 -0.00025506 0.00165538 0.90984097
0.00025501 0.99999995 0.00003153 0.00062843
-0.00165539 -0.00003110 0.99999862 -0.09589423
Axis -0.01869333 0.98816641 0.15224229
Axis point -54.62394806 0.00000000 -549.32256263
Rotation angle (degrees) 0.09598246
Shift along axis -0.03098612
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.39
steps = 40, shift = 0.00865, angle = 0.00198 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999857 -0.00027079 0.00165785 0.91330773
0.00027079 0.99999995 0.00000085 0.01154697
-0.00165785 -0.00000040 0.99999861 -0.10887257
Axis -0.00036969 0.98692121 0.16120295
Axis point -64.58307700 0.00000000 -550.95347282
Rotation angle (degrees) 0.09624646
Shift along axis -0.00649227
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00523, angle = 0.00309 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999860 -0.00024982 0.00164186 0.91187078
0.00024974 0.99999995 0.00004789 0.00059240
-0.00164188 -0.00004748 0.99999864 -0.09822327
Axis -0.02870020 0.98821821 0.15033654
Axis point -55.67329292 0.00000000 -554.72939439
Rotation angle (degrees) 0.09519374
Shift along axis -0.04035200
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 44, shift = 0.0686, angle = 0.00122 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999862 -0.00026783 0.00163049 0.93728423
0.00026776 0.99999995 0.00004654 -0.06494816
-0.00163050 -0.00004610 0.99999866 -0.07216865
Axis -0.02802185 0.98639183 0.16200598
Axis point -33.65735015 0.00000000 -573.12430909
Rotation angle (degrees) 0.09470920
Shift along axis -0.10202052
> fitmap #467 inMap #397
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 44, shift = 0.00617, angle = 0.00196 degrees
Position of MotB_PG.mrc copy (#467) relative to Cage-top-withPflA.mrc copy
(#397) coordinates:
Matrix rotation and translation
0.99999860 -0.00028319 0.00164033 0.93835475
0.00028316 0.99999994 0.00001758 -0.05635572
-0.00164034 -0.00001712 0.99999864 -0.07964230
Axis -0.01042365 0.98537062 0.17010610
Axis point -39.90555028 0.00000000 -571.58328921
Rotation angle (degrees) 0.09537980
Shift along axis -0.07885999
> show #!398 models
> fitmap #468 inMap #398
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.45
steps = 1428, shift = 57.2, angle = 7.74 degrees
Position of MotB_PG.mrc copy (#468) relative to Cage-top-withPflA.mrc copy
(#398) coordinates:
Matrix rotation and translation
0.99999869 -0.00021505 0.00159239 0.93822537
0.00021476 0.99999994 0.00018084 -0.10577867
-0.00159243 -0.00018050 0.99999870 -0.03638926
Axis -0.11173462 0.98481011 0.13290758
Axis point -4.54075151 0.00000000 -574.19050520
Rotation angle (degrees) 0.09264592
Shift along axis -0.21384056
> fitmap #469 inMap #399
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 1404, shift = 60.5, angle = 7.86 degrees
Position of MotB_PG.mrc copy (#469) relative to Cage-top-withPflA.mrc copy
(#399) coordinates:
Matrix rotation and translation
0.99999875 -0.00015082 0.00156099 0.92097634
0.00015043 0.99999994 0.00025116 -0.10089479
-0.00156103 -0.00025092 0.99999873 -0.02782452
Axis -0.15806238 0.98286421 0.09483794
Axis point -2.34314366 0.00000000 -564.94619116
Rotation angle (degrees) 0.09099890
Shift along axis -0.24737641
> show #!399 models
> hide #!470 models
> show #!470 models
> show #!400 models
> fitmap #470 inMap #400
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = -0.1352, correlation about mean = -0.04624, overlap = -2.982
steps = 2000, shift = 46.1, angle = 21.8 degrees
Position of MotB_PG.mrc copy (#470) relative to Cage-top-withPflA.mrc copy
(#400) coordinates:
Matrix rotation and translation
0.97076664 0.00780344 -0.23989826 83.25567773
-0.01317827 0.99969660 -0.02080862 -4.87853245
0.23966310 0.02336176 0.97057498 -138.52920411
Axis 0.09163065 -0.99484134 -0.04352618
Axis point 607.30926255 0.00000000 265.97006507
Rotation angle (degrees) 13.94698857
Shift along axis 18.51178409
> hide #!400 models
> show #!400 models
> fitmap #470 inMap #400
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = -0.135, correlation about mean = -0.04674, overlap = -2.937
steps = 816, shift = 3.65, angle = 3.58 degrees
Position of MotB_PG.mrc copy (#470) relative to Cage-top-withPflA.mrc copy
(#400) coordinates:
Matrix rotation and translation
0.96671648 -0.05326199 -0.25024460 108.86538296
0.04758624 0.99845525 -0.02868119 -21.35167717
0.25138566 0.01581838 0.96775771 -138.81508689
Axis 0.08664272 -0.97669714 0.19635613
Axis point 599.99307868 0.00000000 354.18563391
Rotation angle (degrees) 14.88022815
Shift along axis 3.02932104
> select add #470
2 models selected
> view matrix models
> #470,0.4005,-0.91104,-0.097991,908.44,0.87808,0.41216,-0.24312,475.53,0.26188,0.011326,0.96503,-32.127
> view matrix models
> #470,0.4005,-0.91104,-0.097991,907.69,0.87808,0.41216,-0.24312,475,0.26188,0.011326,0.96503,26.918
> view matrix models
> #470,0.4005,-0.91104,-0.097991,904.27,0.87808,0.41216,-0.24312,482.45,0.26188,0.011326,0.96503,25.767
> fitmap #470 inMap #400
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.4
steps = 1632, shift = 29.5, angle = 15 degrees
Position of MotB_PG.mrc copy (#470) relative to Cage-top-withPflA.mrc copy
(#400) coordinates:
Matrix rotation and translation
0.99999864 -0.00019159 0.00162026 0.90318947
0.00019138 0.99999995 0.00012522 -0.02341278
-0.00162029 -0.00012491 0.99999866 -0.07274297
Axis -0.07642757 0.99018430 0.11702081
Axis point -37.17022620 0.00000000 -552.71416748
Rotation angle (degrees) 0.09375508
Shift along axis -0.10072398
> fitmap #470 inMap #400
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 40, shift = 0.0426, angle = 0.00457 degrees
Position of MotB_PG.mrc copy (#470) relative to Cage-top-withPflA.mrc copy
(#400) coordinates:
Matrix rotation and translation
0.99999865 -0.00025847 0.00160383 0.94189560
0.00025833 0.99999994 0.00008499 -0.07150167
-0.00160386 -0.00008458 0.99999869 -0.07071971
Axis -0.05211963 0.98592652 0.15884724
Axis point -30.66809446 0.00000000 -583.05061054
Rotation angle (degrees) 0.09320545
Shift along axis -0.13082027
> show #!401 models
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.5982, correlation about mean = 0.6773, overlap = 19.78
steps = 2000, shift = 42.2, angle = 13.9 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.96076894 -0.24176254 0.13591857 33.89603122
0.23881423 0.97032758 0.03784301 -47.95801188
-0.14103456 -0.00389910 0.98999697 15.27035077
Axis -0.07504376 0.49790501 0.86397861
Axis point 186.38809630 105.85213953 0.00000000
Rotation angle (degrees) 16.14794001
Shift along axis -13.22896359
> select subtract #470
Nothing selected
> select add #471
2 models selected
> view matrix models
> #471,-0.11229,-0.99335,-0.025264,930.02,0.98496,-0.11463,0.12929,507.2,-0.13133,-0.010366,0.99128,158.57
> view matrix models
> #471,-0.11229,-0.99335,-0.025264,962.7,0.98496,-0.11463,0.12929,503.39,-0.13133,-0.010366,0.99128,163.89
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9911, correlation about mean = 0.9946, overlap = 38.36
steps = 1644, shift = 24.9, angle = 16.1 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999835 -0.00044824 0.00174490 0.93394776
0.00044870 0.99999984 -0.00026275 0.07586433
-0.00174478 0.00026353 0.99999842 -0.18051829
Axis 0.14452789 0.95835147 0.24632125
Axis point -126.03890641 0.00000000 -521.84173244
Rotation angle (degrees) 0.10431680
Shift along axis 0.16322070
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 44, shift = 0.0718, angle = 0.0227 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999859 -0.00023526 0.00164286 0.90838852
0.00023517 0.99999994 0.00005599 -0.00461354
-0.00164288 -0.00005561 0.99999863 -0.09181425
Axis -0.03360277 0.98934677 0.14164679
Axis point -51.28576763 0.00000000 -551.98975529
Rotation angle (degrees) 0.09514307
Shift along axis -0.04809396
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.45
steps = 28, shift = 0.0582, angle = 0.00544 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999855 -0.00031050 0.00165810 0.94331422
0.00031050 0.99999993 0.00000022 -0.06464056
-0.00165810 0.00000030 0.99999861 -0.07549491
Axis 0.00002405 0.98291418 0.18406442
Axis point -36.46620784 0.00000000 -568.94625168
Rotation angle (degrees) 0.09665340
Shift along axis -0.07740936
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0147, angle = 0.00348 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999860 -0.00027726 0.00163047 0.93712232
0.00027719 0.99999993 0.00004281 -0.05344925
-0.00163048 -0.00004236 0.99999865 -0.08046028
Axis -0.02574218 0.98552435 0.16756819
Axis point -39.60138096 0.00000000 -573.36413965
Rotation angle (degrees) 0.09479154
Shift along axis -0.09028169
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.38
steps = 44, shift = 0.0635, angle = 0.00527 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999852 -0.00028996 0.00167869 0.91043794
0.00029002 0.99999993 -0.00003445 0.01306134
-0.00167868 0.00003494 0.99999857 -0.12585876
Axis 0.02036283 0.98520091 0.17018965
Axis point -75.53194470 0.00000000 -542.29391458
Rotation angle (degrees) 0.09762648
Shift along axis 0.00998728
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 44, shift = 0.0118, angle = 0.00482 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999858 -0.00025537 0.00164671 0.91127584
0.00025531 0.99999994 0.00003518 0.00757760
-0.00164673 -0.00003476 0.99999862 -0.10286141
Axis -0.02098178 0.98797342 0.15319360
Axis point -59.46048496 0.00000000 -553.09139752
Rotation angle (degrees) 0.09549862
Shift along axis -0.02739143
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0436, angle = 0.00643 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999854 -0.00032225 0.00166322 0.94016625
0.00032234 0.99999992 -0.00005327 -0.02685516
-0.00166321 0.00005380 0.99999860 -0.10359504
Axis 0.03158274 0.98124835 0.19014258
Axis point -59.94556052 0.00000000 -565.62983618
Rotation angle (degrees) 0.09711633
Shift along axis -0.01635639
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0327, angle = 0.00875 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999861 -0.00023598 0.00163367 0.91085506
0.00023587 0.99999994 0.00006908 -0.00555099
-0.00163369 -0.00006870 0.99999864 -0.09252214
Axis -0.04169873 0.98887209 0.14280479
Axis point -51.22396429 0.00000000 -556.14645536
Rotation angle (degrees) 0.09465638
Shift along axis -0.05668333
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00277, angle = 0.00105 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999862 -0.00022917 0.00163053 0.90993437
0.00022903 0.99999994 0.00008580 -0.01055253
-0.00163055 -0.00008543 0.99999865 -0.08746748
Axis -0.05192845 0.98893699 0.13894989
Axis point -47.23686692 0.00000000 -555.87503377
Rotation angle (degrees) 0.09446827
Shift along axis -0.06984086
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.000641, angle = 0.000506 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999861 -0.00023242 0.00163585 0.90940551
0.00023229 0.99999994 0.00007956 -0.00987012
-0.00163587 -0.00007918 0.99999864 -0.08697963
Axis -0.04798003 0.98892213 0.14046686
Axis point -47.08224597 0.00000000 -554.03769787
Rotation angle (degrees) 0.09477772
Shift along axis -0.06561184
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00487, angle = 0.00209 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999858 -0.00024867 0.00164623 0.91082675
0.00024859 0.99999994 0.00004862 -0.00223146
-0.00164625 -0.00004822 0.99999862 -0.09425437
Axis -0.02907034 0.98836835 0.14927461
Axis point -52.92215688 0.00000000 -552.56806484
Rotation angle (degrees) 0.09543278
Shift along axis -0.04275333
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00256, angle = 0.00152 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999856 -0.00025830 0.00166057 0.90937328
0.00025825 0.99999994 0.00002861 -0.00086352
-0.00166058 -0.00002818 0.99999860 -0.09337741
Axis -0.01689434 0.98797895 0.15366251
Axis point -52.94875480 0.00000000 -547.35928957
Rotation angle (degrees) 0.09630190
Shift along axis -0.03056501
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0421, angle = 0.00208 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999858 -0.00028827 0.00164234 0.93596589
0.00028824 0.99999993 0.00001965 -0.04580522
-0.00164235 -0.00001918 0.99999863 -0.08514673
Axis -0.01164460 0.98487776 0.17285890
Axis point -43.93252475 0.00000000 -569.43360061
Rotation angle (degrees) 0.09554417
Shift along axis -0.07072987
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.39
steps = 40, shift = 0.0523, angle = 0.00346 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999851 -0.00029155 0.00168161 0.91118920
0.00029160 0.99999993 -0.00002621 0.00538525
-0.00168160 0.00002669 0.99999857 -0.11767887
Axis 0.01549575 0.98518007 0.17082189
Axis point -69.45570139 0.00000000 -541.92197780
Rotation angle (degrees) 0.09779829
Shift along axis -0.00067713
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 44, shift = 0.00925, angle = 0.005 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999859 -0.00025186 0.00164470 0.91104527
0.00025179 0.99999994 0.00004216 0.00524643
-0.00164471 -0.00004175 0.99999863 -0.10077751
Axis -0.02520848 0.98816593 0.15130310
Axis point -57.77967397 0.00000000 -553.46972174
Rotation angle (degrees) 0.09536335
Shift along axis -0.03302967
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.044, angle = 0.00655 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999854 -0.00031886 0.00166153 0.94002720
0.00031894 0.99999992 -0.00004875 -0.02881645
-0.00166152 0.00004928 0.99999860 -0.10201749
Axis 0.02895969 0.98166252 0.18841450
Axis point -58.62895581 0.00000000 -566.16316401
Rotation angle (degrees) 0.09697672
Shift along axis -0.02028671
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0377, angle = 0.00739 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999860 -0.00023796 0.00163940 0.90902933
0.00023788 0.99999994 0.00004910 0.00265194
-0.00163941 -0.00004871 0.99999863 -0.09796322
Axis -0.02951117 0.98920150 0.14356007
Axis point -55.94979450 0.00000000 -553.84732399
Rotation angle (degrees) 0.09495641
Shift along axis -0.03826682
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00467, angle = 0.00203 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999862 -0.00022818 0.00163000 0.90949033
0.00022805 0.99999994 0.00008182 -0.00771421
-0.00163002 -0.00008145 0.99999865 -0.08957424
Axis -0.04953816 0.98913290 0.13842715
Axis point -48.97126328 0.00000000 -556.03081956
Rotation angle (degrees) 0.09441899
Shift along axis -0.06508437
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00397, angle = 0.00136 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999863 -0.00021764 0.00162494 0.90827311
0.00021747 0.99999994 0.00010238 -0.01355201
-0.00162497 -0.00010203 0.99999865 -0.08368251
Axis -0.06222095 0.98923580 0.13244275
Axis point -44.44244914 0.00000000 -555.89186498
Rotation angle (degrees) 0.09411616
Shift along axis -0.08100289
> fitmap #471 inMap #401
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00114, angle = 0.000861 degrees
Position of MotB_PG.mrc copy (#471) relative to Cage-top-withPflA.mrc copy
(#401) coordinates:
Matrix rotation and translation
0.99999861 -0.00022573 0.00163262 0.90837630
0.00022558 0.99999994 0.00009233 -0.01289388
-0.00163264 -0.00009196 0.99999864 -0.08350105
Axis -0.05581966 0.98903841 0.13670112
Axis point -44.42207351 0.00000000 -553.86807537
Rotation angle (degrees) 0.09457974
Shift along axis -0.07487249
> select subtract #471
Nothing selected
> show #!402 models
> select add #472
2 models selected
> view matrix models
> #472,-0.22033,-0.97542,-0.0010907,873.8,0.96964,-0.21915,0.10847,545.21,-0.10604,0.022841,0.9941,165.9
> fitmap #472 inMap #402
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.41
steps = 1104, shift = 31.1, angle = 6.8 degrees
Position of MotB_PG.mrc copy (#472) relative to Cage-top-withPflA.mrc copy
(#402) coordinates:
Matrix rotation and translation
0.99999846 -0.00038072 0.00169535 0.94440201
0.00038093 0.99999989 -0.00012016 -0.00458957
-0.00169530 0.00012081 0.99999853 -0.12577982
Axis 0.06917527 0.97334941 0.21864515
Axis point -78.02225397 0.00000000 -555.76314653
Rotation angle (degrees) 0.09979462
Shift along axis 0.03336086
> fitmap #472 inMap #402
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0414, angle = 0.00897 degrees
Position of MotB_PG.mrc copy (#472) relative to Cage-top-withPflA.mrc copy
(#402) coordinates:
Matrix rotation and translation
0.99999857 -0.00029275 0.00164605 0.93757419
0.00029275 0.99999993 -0.00000062 -0.04410484
-0.00164605 0.00000110 0.99999862 -0.08853526
Axis 0.00051640 0.98455061 0.17509947
Axis point -47.10083821 0.00000000 -569.64800240
Rotation angle (degrees) 0.09579179
Shift along axis -0.05844176
> fitmap #472 inMap #402
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 48, shift = 0.0117, angle = 0.00188 degrees
Position of MotB_PG.mrc copy (#472) relative to Cage-top-withPflA.mrc copy
(#402) coordinates:
Matrix rotation and translation
0.99999860 -0.00029009 0.00162905 0.94499312
0.00029004 0.99999993 0.00002736 -0.06204573
-0.00162906 -0.00002689 0.99999865 -0.08215054
Axis -0.01639085 0.98438262 0.17527749
Axis point -40.16898183 0.00000000 -579.20667338
Rotation angle (degrees) 0.09481883
Shift along axis -0.09096512
> fitmap #472 inMap #402
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.00559, angle = 0.00274 degrees
Position of MotB_PG.mrc copy (#472) relative to Cage-top-withPflA.mrc copy
(#402) coordinates:
Matrix rotation and translation
0.99999862 -0.00025993 0.00162402 0.93375646
0.00025983 0.99999994 0.00006397 -0.05750571
-0.00162404 -0.00006355 0.99999866 -0.07470172
Axis -0.03873874 0.98669633 0.15789131
Axis point -35.35209746 0.00000000 -572.49783841
Rotation angle (degrees) 0.09430461
Shift along axis -0.10470797
> select subtract #472
Nothing selected
> select add #473
2 models selected
> show #!403 models
> view matrix models
> #473,-0.54017,-0.84141,-0.015851,845.41,0.83704,-0.53912,0.093317,669.85,-0.087063,0.037138,0.99551,97.46
> view matrix models
> #473,-0.54017,-0.84141,-0.015851,846.45,0.83704,-0.53912,0.093317,671.34,-0.087063,0.037138,0.99551,131.95
> view matrix models
> #473,-0.54017,-0.84141,-0.015851,844.97,0.83704,-0.53912,0.093317,670.28,-0.087063,0.037138,0.99551,131.7
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.42
steps = 704, shift = 14.8, angle = 6.01 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999840 -0.00043280 0.00171706 0.96042987
0.00043318 0.99999985 -0.00022161 0.00348528
-0.00171697 0.00022235 0.99999848 -0.14376513
Axis 0.12438457 0.96211384 0.24262199
Axis point -95.67547434 0.00000000 -553.06298145
Rotation angle (degrees) 0.10225148
Shift along axis 0.08793532
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.038, angle = 0.0124 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999851 -0.00028858 0.00168204 0.90917715
0.00028869 0.99999992 -0.00006516 0.04012128
-0.00168202 0.00006565 0.99999856 -0.12559534
Axis 0.03829552 0.98487112 0.16900396
Axis point -79.55088672 0.00000000 -539.38049692
Rotation angle (degrees) 0.09785369
Shift along axis 0.05310559
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0142, angle = 0.00428 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999856 -0.00027293 0.00165649 0.91410675
0.00027292 0.99999993 0.00000325 0.01227802
-0.00165650 -0.00000280 0.99999860 -0.10949951
Axis -0.00180332 0.98669560 0.16256858
Axis point -64.92618881 0.00000000 -551.87940512
Rotation angle (degrees) 0.09618994
Shift along axis -0.00733494
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00894, angle = 0.00396 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999860 -0.00024121 0.00163589 0.91112302
0.00024111 0.99999994 0.00006115 -0.00135213
-0.00163591 -0.00006075 0.99999864 -0.09598640
Axis -0.03683487 0.98863698 0.14573990
Axis point -53.86424798 0.00000000 -555.90303619
Rotation angle (degrees) 0.09480732
Shift along axis -0.04888692
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0419, angle = 0.00716 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999854 -0.00031170 0.00165904 0.93888451
0.00031177 0.99999992 -0.00003922 -0.03197894
-0.00165904 0.00003973 0.99999860 -0.09864364
Axis 0.02337811 0.98253215 0.18461863
Axis point -55.90787527 0.00000000 -566.35621109
Rotation angle (degrees) 0.09674600
Shift along axis -0.02768245
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.42
steps = 40, shift = 0.00503, angle = 0.00126 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999857 -0.00031787 0.00163831 0.94768673
0.00031794 0.99999992 -0.00004353 -0.02982823
-0.00163830 0.00004405 0.99999863 -0.11171869
Axis 0.02622928 0.98135129 0.19042499
Axis point -64.73129269 0.00000000 -578.91802479
Rotation angle (degrees) 0.09565203
Shift along axis -0.02568887
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9947, overlap = 38.36
steps = 28, shift = 0.078, angle = 0.00212 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999854 -0.00029773 0.00166126 0.90964640
0.00029777 0.99999992 -0.00002280 0.04014489
-0.00166125 0.00002329 0.99999860 -0.12436786
Axis 0.01365401 0.98422294 0.17640513
Axis point -77.59411958 0.00000000 -547.38507144
Rotation angle (degrees) 0.09670865
Shift along axis 0.02999271
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9947, overlap = 38.37
steps = 40, shift = 0.0174, angle = 0.000912 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999854 -0.00028240 0.00166509 0.91106553
0.00028244 0.99999993 -0.00002097 0.03060910
-0.00166508 0.00002144 0.99999859 -0.11712825
Axis 0.01255222 0.98584101 0.16721227
Axis point -72.10025599 0.00000000 -547.05327292
Rotation angle (degrees) 0.09677259
Shift along axis 0.02202632
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 44, shift = 0.102, angle = 0.00949 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999864 -0.00023307 0.00161023 0.93151413
0.00023287 0.99999993 0.00012717 -0.08777463
-0.00161026 -0.00012680 0.99999867 -0.05425301
Axis -0.07781270 0.98669447 0.14275577
Axis point -18.43937455 0.00000000 -570.45115691
Rotation angle (degrees) 0.09350430
Shift along axis -0.16683530
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 28, shift = 0.076, angle = 0.00156 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999864 -0.00020781 0.00161574 0.90675748
0.00020761 0.99999994 0.00011880 -0.00824603
-0.00161577 -0.00011846 0.99999866 -0.08655156
Axis -0.07262824 0.98921869 0.12716731
Axis point -46.42271098 0.00000000 -557.41832771
Rotation angle (degrees) 0.09358492
Shift along axis -0.08501986
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0447, angle = 0.00716 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999860 -0.00028493 0.00163024 0.93929756
0.00028490 0.99999993 0.00002171 -0.04475119
-0.00163025 -0.00002125 0.99999865 -0.08989656
Axis -0.01297767 0.98498604 0.17214555
Axis point -47.09786098 0.00000000 -575.64056560
Rotation angle (degrees) 0.09482973
Shift along axis -0.07174448
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.36
steps = 28, shift = 0.0791, angle = 0.00166 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999858 -0.00026588 0.00164506 0.90285695
0.00026581 0.99999993 0.00003784 0.02486070
-0.00164507 -0.00003740 0.99999862 -0.11186831
Axis -0.02256796 0.98694144 0.15949067
Axis point -66.22409052 0.00000000 -548.69678506
Rotation angle (degrees) 0.09550256
Shift along axis -0.01368154
> fitmap #473 inMap #403
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.45
steps = 44, shift = 0.116, angle = 0.00574 degrees
Position of MotB_PG.mrc copy (#473) relative to Cage-top-withPflA.mrc copy
(#403) coordinates:
Matrix rotation and translation
0.99999865 -0.00022859 0.00160374 0.93394269
0.00022840 0.99999993 0.00012106 -0.08702344
-0.00160377 -0.00012070 0.99999868 -0.05395382
Axis -0.07441153 0.98725792 0.14065815
Axis point -18.88248331 0.00000000 -574.80424643
Rotation angle (degrees) 0.09307451
Shift along axis -0.16299972
> select subtract #473
Nothing selected
> select add #473
2 models selected
> select subtract #473
Nothing selected
> show #!404 models
> select add #474
2 models selected
> view matrix models
> #474,-0.79508,-0.60601,-0.024524,768.85,0.60308,-0.79424,0.074026,770.56,-0.064338,0.044067,0.99695,94.898
> view matrix models
> #474,-0.79508,-0.60601,-0.024524,770.74,0.60308,-0.79424,0.074026,771.03,-0.064338,0.044067,0.99695,120.66
> fitmap #474 inMap #404
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9911, correlation about mean = 0.9946, overlap = 38.36
steps = 488, shift = 11.5, angle = 5.04 degrees
Position of MotB_PG.mrc copy (#474) relative to Cage-top-withPflA.mrc copy
(#404) coordinates:
Matrix rotation and translation
0.99999838 -0.00042558 0.00172772 0.93536120
0.00042597 0.99999985 -0.00022315 0.06391499
-0.00172763 0.00022389 0.99999846 -0.17150770
Axis 0.12463864 0.96337808 0.23741920
Axis point -117.69396494 0.00000000 -531.57697489
Rotation angle (degrees) 0.10275149
Shift along axis 0.13743723
> fitmap #474 inMap #404
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0944, angle = 0.016 degrees
Position of MotB_PG.mrc copy (#474) relative to Cage-top-withPflA.mrc copy
(#404) coordinates:
Matrix rotation and translation
0.99999857 -0.00028383 0.00164539 0.93260035
0.00028382 0.99999993 0.00000239 -0.03442457
-0.00164539 -0.00000193 0.99999862 -0.09195694
Axis -0.00129410 0.98544555 0.16998645
Axis point -50.17699744 0.00000000 -566.79784494
Rotation angle (degrees) 0.09566645
Shift along axis -0.05076185
> fitmap #474 inMap #404
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.03, angle = 0.00597 degrees
Position of MotB_PG.mrc copy (#474) relative to Cage-top-withPflA.mrc copy
(#404) coordinates:
Matrix rotation and translation
0.99999861 -0.00021581 0.00163115 0.90599060
0.00021568 0.99999994 0.00007982 -0.00760117
-0.00163118 -0.00007947 0.99999864 -0.08734062
Axis -0.04834641 0.99020672 0.13097055
Axis point -48.05235286 0.00000000 -553.60798205
Rotation angle (degrees) 0.09438322
Shift along axis -0.06276718
> fitmap #474 inMap #404
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.45
steps = 28, shift = 0.0565, angle = 0.00683 degrees
Position of MotB_PG.mrc copy (#474) relative to Cage-top-withPflA.mrc copy
(#404) coordinates:
Matrix rotation and translation
0.99999855 -0.00030804 0.00165539 0.94354504
0.00030802 0.99999992 0.00000833 -0.06774461
-0.00165540 -0.00000783 0.99999860 -0.07326682
Axis -0.00479850 0.98311347 0.18293410
Axis point -34.44648005 0.00000000 -569.76762323
Rotation angle (degrees) 0.09647619
Shift along axis -0.08453124
> select subtract #474
Nothing selected
> select add #475
2 models selected
> show #!405 models
> view matrix models
> #475,-0.95433,-0.29762,-0.026062,664.3,0.29598,-0.95373,0.052923,836.59,-0.040607,0.042792,0.99826,94.484
> view matrix models
> #475,-0.95433,-0.29762,-0.026062,664.87,0.29598,-0.95373,0.052923,838.39,-0.040607,0.042792,0.99826,111.2
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 252, shift = 9.13, angle = 3.93 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999857 -0.00027773 0.00164503 0.93395262
0.00027772 0.99999992 0.00000772 -0.05152256
-0.00164504 -0.00000726 0.99999862 -0.08699380
Axis -0.00449017 0.98603654 0.16646856
Axis point -45.38483265 0.00000000 -567.58841550
Rotation angle (degrees) 0.09558851
Shift along axis -0.06947846
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.38
steps = 40, shift = 0.07, angle = 0.00275 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999853 -0.00028741 0.00166730 0.91513523
0.00028746 0.99999992 -0.00003363 0.02063990
-0.00166729 0.00003411 0.99999858 -0.11709628
Axis 0.02001558 0.98526578 0.16985500
Axis point -71.68526470 0.00000000 -548.70794937
Rotation angle (degrees) 0.09695777
Shift along axis 0.01876336
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00709, angle = 0.00319 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999856 -0.00026559 0.00165254 0.91350964
0.00026556 0.99999993 0.00001541 0.00759971
-0.00165255 -0.00001498 0.99999861 -0.10534893
Axis -0.00907845 0.98729081 0.15866456
Axis point -61.61207839 0.00000000 -552.74740700
Rotation angle (degrees) 0.09590255
Shift along axis -0.01750527
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00597, angle = 0.00278 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999859 -0.00024477 0.00163900 0.91157552
0.00024467 0.99999993 0.00005711 -0.00253965
-0.00163902 -0.00005671 0.99999863 -0.09533834
Axis -0.03432181 0.98845355 0.14758586
Axis point -53.40229280 0.00000000 -555.22040815
Rotation angle (degrees) 0.09500517
Shift along axis -0.04786783
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00573, angle = 0.00218 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999861 -0.00022599 0.00162822 0.90961440
0.00022585 0.99999993 0.00008845 -0.01013987
-0.00162825 -0.00008808 0.99999864 -0.08769141
Axis -0.05361584 0.98908626 0.13723596
Axis point -47.43197455 0.00000000 -556.36100482
Rotation angle (degrees) 0.09432040
Shift along axis -0.07083336
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00185, angle = 0.000662 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999861 -0.00022091 0.00162716 0.90850963
0.00022075 0.99999993 0.00009876 -0.01301139
-0.00162719 -0.00009840 0.99999864 -0.08411870
Axis -0.05992372 0.98913548 0.13423915
Axis point -44.75758263 0.00000000 -555.48102784
Rotation angle (degrees) 0.09425443
Shift along axis -0.07860333
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.000893, angle = 0.00065 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999860 -0.00022639 0.00163325 0.90831017
0.00022624 0.99999993 0.00009092 -0.01260222
-0.00163328 -0.00009055 0.99999863 -0.08369122
Axis -0.05494678 0.98903918 0.13704869
Axis point -44.59168032 0.00000000 -553.68842238
Rotation angle (degrees) 0.09461622
Shift along axis -0.07384258
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00699, angle = 0.00242 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999858 -0.00024617 0.00164218 0.91126480
0.00024608 0.99999993 0.00005471 -0.00274285
-0.00164220 -0.00005431 0.99999862 -0.09427387
Axis -0.03281091 0.98842189 0.14814054
Axis point -52.75012480 0.00000000 -554.02371299
Rotation angle (degrees) 0.09519284
Shift along axis -0.04657631
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0029, angle = 0.000566 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999858 -0.00024121 0.00164140 0.91024460
0.00024111 0.99999993 0.00006321 -0.00607093
-0.00164141 -0.00006282 0.99999862 -0.09071357
Axis -0.03795442 0.98866537 0.14525923
Axis point -50.05609046 0.00000000 -553.35416137
Rotation angle (degrees) 0.09512384
Shift along axis -0.05372691
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00372, angle = 0.00183 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999856 -0.00025423 0.00165095 0.91101299
0.00025417 0.99999993 0.00003566 0.00068411
-0.00165096 -0.00003524 0.99999861 -0.09689161
Axis -0.02121976 0.98813019 0.15214616
Axis point -55.15481705 0.00000000 -551.42768835
Rotation angle (degrees) 0.09572924
Shift along axis -0.03339717
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00415, angle = 0.00151 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999855 -0.00026482 0.00165699 0.91202200
0.00026480 0.99999993 0.00001232 0.00747752
-0.00165700 -0.00001188 0.99999860 -0.10354791
Axis -0.00720911 0.98744326 0.15780948
Axis point -60.55615625 0.00000000 -550.39256987
Rotation angle (degrees) 0.09614598
Shift along axis -0.01553208
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00208, angle = 0.000287 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999855 -0.00026145 0.00165790 0.91085693
0.00026142 0.99999993 0.00001591 0.00580180
-0.00165790 -0.00001547 0.99999860 -0.10115968
Axis -0.00934812 0.98775068 0.15576007
Axis point -58.81938388 0.00000000 -549.35039900
Rotation angle (degrees) 0.09616867
Shift along axis -0.01854070
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.39
steps = 40, shift = 0.00665, angle = 0.00155 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999854 -0.00027420 0.00166108 0.91322565
0.00027421 0.99999993 -0.00000773 0.01401009
-0.00166108 0.00000819 0.99999859 -0.11051191
Axis 0.00472909 0.98663582 0.16287230
Axis point -66.08746499 0.00000000 -549.83375204
Rotation angle (degrees) 0.09646207
Shift along axis 0.00014225
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00586, angle = 0.003 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999857 -0.00025502 0.00164508 0.91263496
0.00025496 0.99999993 0.00003820 0.00212090
-0.00164509 -0.00003778 0.99999862 -0.10014808
Axis -0.02281533 0.98794246 0.15313119
Axis point -57.25012478 0.00000000 -554.34245204
Rotation angle (degrees) 0.09540678
Shift along axis -0.03406253
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00609, angle = 0.00271 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999860 -0.00023207 0.00163112 0.91028408
0.00023194 0.99999993 0.00007710 -0.00647306
-0.00163114 -0.00007672 0.99999864 -0.09111807
Axis -0.04662902 0.98895843 0.14066616
Axis point -50.08892584 0.00000000 -556.35011707
Rotation angle (degrees) 0.09450058
Shift along axis -0.06166447
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0047, angle = 0.00107 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999861 -0.00021615 0.00162890 0.90632977
0.00021601 0.99999994 0.00008654 -0.00767609
-0.00162892 -0.00008618 0.99999864 -0.08734085
Axis -0.05248420 0.98994970 0.13132026
Axis point -47.79406871 0.00000000 -554.29833991
Rotation angle (degrees) 0.09427722
Shift along axis -0.06663656
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00685, angle = 0.00283 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999858 -0.00024760 0.00164340 0.91138481
0.00024751 0.99999993 0.00005140 -0.00257442
-0.00164341 -0.00005099 0.99999862 -0.09483617
Axis -0.03078958 0.98837518 0.14888423
Axis point -53.19955466 0.00000000 -553.78004146
Rotation angle (degrees) 0.09526767
Shift along axis -0.04472526
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00213, angle = 0.000375 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999857 -0.00024822 0.00164908 0.90991367
0.00024814 0.99999993 0.00004823 -0.00355461
-0.00164910 -0.00004782 0.99999861 -0.09246661
Axis -0.02878361 0.98845429 0.14876025
Axis point -51.69590682 0.00000000 -551.05341806
Rotation angle (degrees) 0.09558972
Shift along axis -0.04345952
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0107, angle = 0.00251 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999856 -0.00026863 0.00165417 0.91376223
0.00026861 0.99999993 0.00000983 0.00988203
-0.00165418 -0.00000938 0.99999860 -0.10736058
Axis -0.00573151 0.98705373 0.16028747
Axis point -63.21590702 0.00000000 -552.40659885
Rotation angle (degrees) 0.09602058
Shift along axis -0.01269170
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0077, angle = 0.00358 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999859 -0.00024118 0.00163598 0.91132112
0.00024107 0.99999993 0.00006285 -0.00271868
-0.00163600 -0.00006246 0.99999863 -0.09483665
Axis -0.03786082 0.98860298 0.14570762
Axis point -52.97021584 0.00000000 -555.91198307
Rotation angle (degrees) 0.09481599
Shift along axis -0.05100948
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0428, angle = 0.00425 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999857 -0.00028970 0.00164372 0.93582652
0.00028969 0.99999992 0.00000746 -0.04027749
-0.00164373 -0.00000699 0.99999862 -0.08939098
Axis -0.00432992 0.98481260 0.17356667
Axis point -47.66066358 0.00000000 -569.21725934
Rotation angle (degrees) 0.09563097
Shift along axis -0.05923313
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.00733, angle = 0.00148 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999858 -0.00030099 0.00163293 0.94297312
0.00030101 0.99999992 -0.00001314 -0.03860313
-0.00163293 0.00001363 0.99999864 -0.10781502
Axis 0.00806091 0.98340040 0.18126962
Axis point -60.01391116 0.00000000 -577.76897640
Rotation angle (degrees) 0.09513938
Shift along axis -0.04990469
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.00646, angle = 0.00046 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999858 -0.00029854 0.00163691 0.94167910
0.00029855 0.99999992 -0.00000662 -0.03858739
-0.00163691 0.00000711 0.99999863 -0.09775436
Axis 0.00412568 0.98376326 0.17942361
Axis point -53.59027246 0.00000000 -575.45352400
Rotation angle (degrees) 0.09533603
Shift along axis -0.05161524
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.37
steps = 28, shift = 0.0705, angle = 0.00102 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999856 -0.00028597 0.00164958 0.91641548
0.00028598 0.99999992 -0.00000612 0.02714139
-0.00164958 0.00000659 0.99999861 -0.12334192
Axis 0.00379385 0.98529653 0.17081086
Axis point -75.26096373 0.00000000 -555.58659368
Rotation angle (degrees) 0.09592456
Shift along axis 0.00915093
> fitmap #475 inMap #405
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 40, shift = 0.0872, angle = 0.00533 degrees
Position of MotB_PG.mrc copy (#475) relative to Cage-top-withPflA.mrc copy
(#405) coordinates:
Matrix rotation and translation
0.99999861 -0.00024376 0.00162503 0.92821377
0.00024364 0.99999993 0.00007304 -0.05710271
-0.00162505 -0.00007264 0.99999865 -0.06924302
Axis -0.04428329 0.98797097 0.14816323
Axis point -32.32035654 0.00000000 -568.28684923
Rotation angle (degrees) 0.09424169
Shift along axis -0.10777944
> select subtract #475
Nothing selected
> select add #476
2 models selected
> show #!406 models
> view matrix models
> #476,-0.99871,0.046574,-0.02028,547.06,-0.047218,-0.99835,0.032552,866.1,-0.018731,0.033468,0.99926,96.787
> view matrix models
> #476,-0.99871,0.046574,-0.02028,548.89,-0.047218,-0.99835,0.032552,863.6,-0.018731,0.033468,0.99926,113.75
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.42
steps = 188, shift = 13.5, angle = 2.67 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999839 -0.00043305 0.00171704 0.95990616
0.00043347 0.99999984 -0.00024429 0.01461300
-0.00171693 0.00024503 0.99999847 -0.15235172
Axis 0.13686122 0.96048262 0.24236779
Axis point -103.56668818 0.00000000 -550.49539418
Rotation angle (degrees) 0.10242353
Shift along axis 0.10848432
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 40, shift = 0.0628, angle = 0.0247 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999864 -0.00022432 0.00160992 0.92789006
0.00022413 0.99999993 0.00011778 -0.07407068
-0.00160995 -0.00011742 0.99999867 -0.05773199
Axis -0.07216004 0.98785800 0.13758450
Axis point -22.74441940 0.00000000 -569.73747677
Rotation angle (degrees) 0.09337655
Shift along axis -0.14807092
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 28, shift = 0.073, angle = 0.00151 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999863 -0.00021324 0.00161723 0.90749208
0.00021309 0.99999993 0.00009507 0.00058989
-0.00161725 -0.00009472 0.99999866 -0.09488050
Axis -0.05807689 0.98975165 0.13045594
Axis point -53.01154967 0.00000000 -558.86706015
Rotation angle (degrees) 0.09362055
Shift along axis -0.06449819
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.46
steps = 28, shift = 0.0925, angle = 0.00204 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999862 -0.00024709 0.00161489 0.93663474
0.00024695 0.99999993 0.00008440 -0.08787366
-0.00161491 -0.00008400 0.99999866 -0.05415445
Axis -0.05147064 0.98719255 0.15100213
Axis point -19.68430220 0.00000000 -575.45353041
Rotation angle (degrees) 0.09372739
Shift along axis -0.14313484
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 36, shift = 0.0375, angle = 0.00747 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999855 -0.00029531 0.00165392 0.93600995
0.00029536 0.99999992 -0.00003023 -0.03806279
-0.00165392 0.00003071 0.99999860 -0.09231586
Axis 0.01813251 0.98426632 0.17575844
Axis point -51.44611369 0.00000000 -566.37847382
Rotation angle (degrees) 0.09627759
Shift along axis -0.03671700
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.39
steps = 36, shift = 0.0565, angle = 0.00554 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999860 -0.00025940 0.00162483 0.92079882
0.00025931 0.99999993 0.00005472 0.00592833
-0.00162485 -0.00005430 0.99999865 -0.07502952
Axis -0.03311133 0.98695824 0.15753438
Axis point -42.18125812 0.00000000 -565.99493701
Rotation angle (degrees) 0.09432686
Shift along axis -0.03645758
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 44, shift = 0.0634, angle = 0.00357 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999857 -0.00029873 0.00164163 0.94297051
0.00029872 0.99999992 0.00000957 -0.05751611
-0.00164164 -0.00000908 0.99999862 -0.08347915
Axis -0.00559025 0.98382855 0.17902550
Axis point -42.00431923 0.00000000 -574.18374116
Rotation angle (degrees) 0.09560490
Shift along axis -0.07680232
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 28, shift = 0.0638, angle = 0.00152 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999857 -0.00027641 0.00164094 0.92137129
0.00027638 0.99999992 0.00002370 0.00129529
-0.00164095 -0.00002325 0.99999862 -0.10878473
Axis -0.01410743 0.98601125 0.16608068
Axis point -62.81848556 0.00000000 -561.28742931
Rotation angle (degrees) 0.09535294
Shift along axis -0.02978805
> fitmap #476 inMap #406
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9916, correlation about mean = 0.9947, overlap = 38.47
steps = 28, shift = 0.0902, angle = 0.00136 degrees
Position of MotB_PG.mrc copy (#476) relative to Cage-top-withPflA.mrc copy
(#406) coordinates:
Matrix rotation and translation
0.99999855 -0.00028533 0.00165066 0.92693216
0.00028532 0.99999992 0.00000389 -0.07284765
-0.00165067 -0.00000342 0.99999861 -0.06450375
Axis -0.00217923 0.98538530 0.17032632
Axis point -29.86485374 0.00000000 -561.46397047
Rotation angle (degrees) 0.09597895
Shift along axis -0.08478969
> select subtract #476
Nothing selected
> select add #477
2 models selected
> show #!407 models
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 84, shift = 7.95, angle = 1.36 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999854 -0.00027798 0.00166196 0.92706150
0.00027805 0.99999992 -0.00003934 -0.03432903
-0.00166196 0.00003980 0.99999859 -0.09466651
Axis 0.02347793 0.98602375 0.16494228
Axis point -53.74785559 0.00000000 -558.24755788
Rotation angle (degrees) 0.09657306
Shift along axis -0.02769826
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 36, shift = 0.0224, angle = 0.00402 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999851 -0.00031828 0.00167262 0.93639826
0.00031844 0.99999990 -0.00009570 -0.01095949
-0.00167259 0.00009623 0.99999857 -0.11359704
Axis 0.05627521 0.98080675 0.18668481
Axis point -69.76262438 0.00000000 -559.20250694
Rotation angle (degrees) 0.09770847
Shift along axis 0.02074003
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0431, angle = 0.00811 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00025837 0.00164685 0.91230874
0.00025832 0.99999992 0.00002975 0.00880112
-0.00164687 -0.00002932 0.99999861 -0.10462283
Axis -0.01771547 0.98776311 0.15495224
Axis point -60.84433455 0.00000000 -553.76636553
Rotation angle (degrees) 0.09552715
Shift along axis -0.02368010
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0443, angle = 0.0064 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999852 -0.00032331 0.00166443 0.94037004
0.00032341 0.99999990 -0.00005927 -0.02541750
-0.00166441 0.00005981 0.99999858 -0.10499523
Axis 0.03509594 0.98104101 0.19059592
Axis point -61.24383925 0.00000000 -565.28593212
Rotation angle (degrees) 0.09720709
Shift along axis -0.01194411
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0346, angle = 0.00864 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00023967 0.00163610 0.91094762
0.00023957 0.99999993 0.00006280 -0.00333571
-0.00163612 -0.00006241 0.99999863 -0.09431451
Axis -0.03783512 0.98873604 0.14480863
Axis point -52.63898107 0.00000000 -555.63453051
Rotation angle (degrees) 0.09481007
Shift along axis -0.05142150
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00529, angle = 0.00199 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999861 -0.00022208 0.00162781 0.90846833
0.00022193 0.99999993 0.00009146 -0.01019757
-0.00162783 -0.00009110 0.99999864 -0.08671904
Axis -0.05547453 0.98930209 0.13492201
Axis point -46.83601026 0.00000000 -555.67106739
Rotation angle (degrees) 0.09427584
Shift along axis -0.07218565
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00126, angle = 0.000442 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999861 -0.00022069 0.00162743 0.90839605
0.00022052 0.99999993 0.00009904 -0.01304238
-0.00162745 -0.00009868 0.99999864 -0.08387421
Axis -0.06008618 0.98914690 0.13408233
Axis point -44.59731327 0.00000000 -555.30868601
Rotation angle (degrees) 0.09426861
Shift along axis -0.07872893
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00123, angle = 0.000933 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00022788 0.00163603 0.90817293
0.00022774 0.99999993 0.00008725 -0.01259147
-0.00163605 -0.00008687 0.99999863 -0.08350358
Axis -0.05263253 0.98907159 0.13772149
Axis point -44.54613885 0.00000000 -552.83720224
Rotation angle (degrees) 0.09477384
Shift along axis -0.07175354
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.38
steps = 40, shift = 0.0143, angle = 0.00393 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00026024 0.00164797 0.91300486
0.00026019 0.99999992 0.00002798 0.00597374
-0.00164798 -0.00002756 0.99999861 -0.10333150
Axis -0.01664289 0.98762508 0.15594780
Axis point -59.84110790 0.00000000 -553.81227772
Rotation angle (degrees) 0.09560500
Shift along axis -0.02540954
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00845, angle = 0.00302 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999860 -0.00023217 0.00163249 0.90977389
0.00023206 0.99999993 0.00006973 -0.00376918
-0.00163251 -0.00006935 0.99999863 -0.09319733
Axis -0.04213812 0.98916300 0.14064471
Axis point -51.88070456 0.00000000 -555.91142737
Rotation angle (degrees) 0.09456001
Shift along axis -0.05517221
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00464, angle = 0.00107 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999860 -0.00021936 0.00162935 0.90715427
0.00021923 0.99999993 0.00008288 -0.00714257
-0.00162937 -0.00008252 0.99999864 -0.08847009
Axis -0.05024082 0.98981264 0.13321714
Axis point -48.57598495 0.00000000 -554.81083890
Rotation angle (degrees) 0.09431646
Shift along axis -0.06443171
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00602, angle = 0.00253 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00024737 0.00164325 0.91143465
0.00024729 0.99999993 0.00005184 -0.00274683
-0.00164327 -0.00005143 0.99999862 -0.09470852
Axis -0.03105891 0.98838477 0.14876453
Axis point -53.09481169 0.00000000 -553.84461649
Rotation angle (degrees) 0.09525832
Shift along axis -0.04511236
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0025, angle = 0.00051 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00024845 0.00165064 0.90951886
0.00024837 0.99999993 0.00004700 -0.00370126
-0.00165066 -0.00004659 0.99999861 -0.09205366
Axis -0.02802371 0.98847660 0.14875715
Axis point -51.45267503 0.00000000 -550.32533306
Rotation angle (degrees) 0.09567772
Shift along axis -0.04284035
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0183, angle = 0.00508 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999852 -0.00028709 0.00167183 0.91303882
0.00028714 0.99999992 -0.00002983 0.02104833
-0.00167182 0.00003031 0.99999857 -0.11665770
Axis 0.01772468 0.98541683 0.16923212
Axis point -71.06160863 0.00000000 -546.01078225
Rotation angle (degrees) 0.09720610
Shift along axis 0.01718247
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0038, angle = 0.00374 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00025873 0.00165005 0.91095731
0.00025869 0.99999992 0.00002483 0.01214127
-0.00165006 -0.00002440 0.99999861 -0.10605110
Axis -0.01473774 0.98782308 0.15488178
Axis point -62.13957063 0.00000000 -551.97198430
Rotation angle (degrees) 0.09570648
Shift along axis -0.01785740
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.42
steps = 40, shift = 0.0434, angle = 0.00634 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999851 -0.00032738 0.00166564 0.94060780
0.00032748 0.99999990 -0.00006052 -0.02383975
-0.00166562 0.00006106 0.99999858 -0.10627232
Axis 0.03578955 0.98059213 0.19276459
Axis point -62.15200833 0.00000000 -564.98558558
Rotation angle (degrees) 0.09732242
Shift along axis -0.01019869
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0238, angle = 0.00941 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00023463 0.00163464 0.91138967
0.00023452 0.99999993 0.00007119 -0.01117463
-0.00163467 -0.00007081 0.99999863 -0.08889554
Axis -0.04295383 0.98894635 0.14191574
Axis point -48.47299089 0.00000000 -555.93522043
Rotation angle (degrees) 0.09470572
Shift along axis -0.06281446
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.45
steps = 28, shift = 0.0537, angle = 0.00681 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999853 -0.00031512 0.00166138 0.94371273
0.00031513 0.99999991 -0.00001183 -0.06088014
-0.00166138 0.00001235 0.99999859 -0.07878559
Axis 0.00715055 0.98245746 0.18634971
Axis point -39.35103459 0.00000000 -568.35579881
Rotation angle (degrees) 0.09688953
Shift along axis -0.06774575
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0106, angle = 0.00487 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00027110 0.00162863 0.93577473
0.00027101 0.99999992 0.00005297 -0.05693283
-0.00162864 -0.00005253 0.99999864 -0.07701317
Axis -0.03193428 0.98592850 0.16408896
Axis point -36.88052075 0.00000000 -572.67514388
Rotation angle (degrees) 0.09464575
Shift along axis -0.09865201
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.44
steps = 36, shift = 0.00398, angle = 0.0047 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999855 -0.00028894 0.00165288 0.93407162
0.00028898 0.99999992 -0.00002332 -0.04035771
-0.00165288 0.00002379 0.99999860 -0.09020306
Axis 0.01403668 0.98496286 0.17219505
Axis point -49.71254542 0.00000000 -565.51777064
Rotation angle (degrees) 0.09614876
Shift along axis -0.04217210
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.39
steps = 36, shift = 0.0635, angle = 0.000293 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999855 -0.00028850 0.00165097 0.91782231
0.00028853 0.99999992 -0.00001859 0.00452803
-0.00165097 0.00001906 0.99999861 -0.12964583
Axis 0.01123180 0.98500984 0.17213212
Axis point -77.28112444 0.00000000 -556.04446428
Rotation angle (degrees) 0.09603335
Shift along axis -0.00754726
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9947, overlap = 38.37
steps = 44, shift = 0.0278, angle = 0.003 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999853 -0.00027041 0.00166923 0.90284025
0.00027052 0.99999992 -0.00006432 0.05165313
-0.00166922 0.00006477 0.99999857 -0.13262200
Axis 0.03814182 0.98640767 0.15982840
Axis point -85.14681125 0.00000000 -539.47619099
Rotation angle (degrees) 0.09695767
Shift along axis 0.06419025
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 40, shift = 0.0876, angle = 0.00815 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999860 -0.00024637 0.00162630 0.92866704
0.00024626 0.99999992 0.00006906 -0.05651601
-0.00162632 -0.00006866 0.99999864 -0.07016591
Axis -0.04182437 0.98785876 0.14961882
Axis point -33.00558638 0.00000000 -568.35173714
Rotation angle (degrees) 0.09432616
Shift along axis -0.10516889
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.38
steps = 44, shift = 0.073, angle = 0.00711 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999852 -0.00028833 0.00167040 0.91318084
0.00028840 0.99999992 -0.00003892 0.02087751
-0.00167040 0.00003940 0.99999857 -0.12586714
Axis 0.02309698 0.98516099 0.17007162
Axis point -76.95718188 0.00000000 -546.46842398
Rotation angle (degrees) 0.09714847
Shift along axis 0.02025301
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.38
steps = 44, shift = 0.00939, angle = 0.000498 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999851 -0.00029055 0.00167481 0.91165185
0.00029063 0.99999991 -0.00004607 0.03063370
-0.00167480 0.00004655 0.99999857 -0.12279582
Axis 0.02723327 0.98491409 0.17088764
Axis point -76.33447236 0.00000000 -543.84231355
Rotation angle (degrees) 0.09742936
Shift along axis 0.03401454
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.46
steps = 28, shift = 0.095, angle = 0.00112 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999851 -0.00030823 0.00166916 0.93369869
0.00030830 0.99999991 -0.00004007 -0.06208795
-0.00166915 0.00004059 0.99999857 -0.08170554
Axis 0.02375249 0.98309308 0.18155940
Axis point -42.64193462 0.00000000 -560.18155875
Rotation angle (degrees) 0.09728052
Shift along axis -0.05369497
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0835, angle = 0.00563 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00025425 0.00164445 0.91174473
0.00025419 0.99999992 0.00003807 0.00844491
-0.00164446 -0.00003765 0.99999862 -0.10317780
Axis -0.02274799 0.98800491 0.15273779
Axis point -59.67173824 0.00000000 -554.09843296
Rotation angle (degrees) 0.09536423
Shift along axis -0.02815589
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0459, angle = 0.00643 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999852 -0.00032054 0.00166219 0.94017930
0.00032062 0.99999990 -0.00005064 -0.02797869
-0.00166218 0.00005117 0.99999859 -0.10275622
Axis 0.03005744 0.98146097 0.18929054
Axis point -59.22533844 0.00000000 -566.01375286
Rotation angle (degrees) 0.09703523
Shift along axis -0.01865139
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0347, angle = 0.00839 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00023624 0.00163459 0.91046736
0.00023613 0.99999993 0.00006565 -0.00371217
-0.00163461 -0.00006526 0.99999863 -0.09368364
Axis -0.03960148 0.98894562 0.14289255
Axis point -52.21468455 0.00000000 -555.75704258
Rotation angle (degrees) 0.09470250
Shift along axis -0.05311369
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00463, angle = 0.00175 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999861 -0.00022389 0.00162722 0.90939593
0.00022374 0.99999993 0.00009265 -0.01140261
-0.00162724 -0.00009229 0.99999864 -0.08633760
Axis -0.05620931 0.98910685 0.13604466
Axis point -46.40505351 0.00000000 -556.34204584
Rotation angle (degrees) 0.09426029
Shift along axis -0.07414068
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.000668, angle = 0.000226 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999860 -0.00022540 0.00163086 0.90867337
0.00022525 0.99999993 0.00009277 -0.01242030
-0.00163089 -0.00009240 0.99999863 -0.08444131
Axis -0.05614756 0.98902765 0.13664465
Axis point -45.05186945 0.00000000 -554.63273857
Rotation angle (degrees) 0.09447909
Shift along axis -0.07484227
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00213, angle = 0.00178 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999858 -0.00023850 0.00164292 0.90901508
0.00023838 0.99999993 0.00006731 -0.00794371
-0.00164294 -0.00006692 0.99999862 -0.08804803
Axis -0.04039283 0.98882435 0.14350893
Axis point -48.14065670 0.00000000 -551.92635840
Rotation angle (degrees) 0.09519674
Shift along axis -0.05720830
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0116, angle = 0.00285 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00026252 0.00164957 0.91343371
0.00026248 0.99999992 0.00002438 0.00639501
-0.00164958 -0.00002394 0.99999861 -0.10392055
Axis -0.01446249 0.98747056 0.15713918
Axis point -60.32894879 0.00000000 -553.58599979
Rotation angle (degrees) 0.09571318
Shift along axis -0.02322564
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00885, angle = 0.00345 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999860 -0.00023432 0.00163179 0.91086543
0.00023420 0.99999993 0.00007446 -0.00613214
-0.00163181 -0.00007408 0.99999863 -0.09180704
Axis -0.04500612 0.98884878 0.14195963
Axis point -50.57810207 0.00000000 -556.58334397
Rotation angle (degrees) 0.09454983
Shift along axis -0.06009117
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00556, angle = 0.00172 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999861 -0.00021695 0.00162540 0.90781807
0.00021679 0.99999993 0.00009809 -0.01184672
-0.00162543 -0.00009774 0.99999864 -0.08493062
Axis -0.05960479 0.98945405 0.13201494
Axis point -45.54060389 0.00000000 -555.73076638
Rotation angle (degrees) 0.09412205
Shift along axis -0.07704419
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00233, angle = 0.00125 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00023073 0.00163400 0.90935912
0.00023060 0.99999993 0.00008366 -0.01057889
-0.00163403 -0.00008329 0.99999863 -0.08639655
Axis -0.05052036 0.98891837 0.13959999
Axis point -46.57017702 0.00000000 -554.44298870
Rotation angle (degrees) 0.09467141
Shift along axis -0.06846376
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00246, angle = 0.0018 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00024353 0.00164581 0.90953182
0.00024344 0.99999993 0.00005753 -0.00544234
-0.00164583 -0.00005713 0.99999861 -0.09048929
Axis -0.03443561 0.98864633 0.14626215
Axis point -50.08869718 0.00000000 -551.62974331
Rotation angle (degrees) 0.09538174
Shift along axis -0.04993600
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0105, angle = 0.00253 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00026490 0.00165144 0.91360576
0.00026486 0.99999992 0.00001942 0.00740287
-0.00165144 -0.00001898 0.99999860 -0.10491862
Axis -0.01147758 0.98731498 0.15835841
Axis point -61.17684572 0.00000000 -553.13268126
Rotation angle (degrees) 0.09583629
Shift along axis -0.01979176
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00864, angle = 0.00347 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00023736 0.00163347 0.91116767
0.00023725 0.99999993 0.00007015 -0.00540594
-0.00163349 -0.00006976 0.99999863 -0.09279338
Axis -0.04234302 0.98872423 0.14363656
Axis point -51.31702075 0.00000000 -556.36866359
Rotation angle (degrees) 0.09465898
Shift along axis -0.05725510
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00535, angle = 0.00152 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999861 -0.00021860 0.00162785 0.90749000
0.00021846 0.99999993 0.00008811 -0.00867185
-0.00162788 -0.00008775 0.99999864 -0.08739349
Axis -0.05345922 0.98969218 0.13285897
Axis point -47.62480626 0.00000000 -555.25845081
Rotation angle (degrees) 0.09424134
Shift along axis -0.06870717
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00335, angle = 0.00173 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999858 -0.00023850 0.00163883 0.91028459
0.00023838 0.99999993 0.00006829 -0.00709166
-0.00163885 -0.00006790 0.99999862 -0.08996859
Axis -0.04108557 0.98874538 0.14385601
Axis point -49.40813838 0.00000000 -554.04984556
Rotation angle (degrees) 0.09496763
Shift along axis -0.05735393
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.002, angle = 0.00183 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00025093 0.00165263 0.90956892
0.00025086 0.99999993 0.00004236 -0.00260744
-0.00165264 -0.00004195 0.99999860 -0.09287415
Axis -0.02521142 0.98835728 0.15004755
Axis point -52.16149728 0.00000000 -549.81821195
Rotation angle (degrees) 0.09580463
Shift along axis -0.03944415
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.0149, angle = 0.00383 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999853 -0.00028005 0.00166573 0.91289879
0.00028008 0.99999992 -0.00001625 0.01716891
-0.00166572 0.00001671 0.99999858 -0.11335121
Axis 0.00975554 0.98611119 0.16579972
Axis point -68.29376167 0.00000000 -548.06539057
Rotation angle (degrees) 0.09678326
Shift along axis 0.00704268
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.00385, angle = 0.00342 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00025126 0.00164653 0.90991798
0.00025120 0.99999993 0.00003235 0.01014857
-0.00164654 -0.00003194 0.99999861 -0.10379648
Axis -0.01929571 0.98837489 0.15080700
Axis point -60.46127872 0.00000000 -552.40771308
Rotation angle (degrees) 0.09544896
Shift along axis -0.02318016
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0433, angle = 0.00651 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999852 -0.00032290 0.00166357 0.94022733
0.00032299 0.99999990 -0.00005413 -0.02651081
-0.00166355 0.00005467 0.99999858 -0.10389824
Axis 0.03208526 0.98116843 0.19047062
Axis point -60.19472858 0.00000000 -565.53995002
Rotation angle (degrees) 0.09714447
Shift along axis -0.01563369
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0303, angle = 0.00902 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00023472 0.00163277 0.91110916
0.00023461 0.99999993 0.00007237 -0.00796229
-0.00163279 -0.00007199 0.99999863 -0.09087961
Axis -0.04371318 0.98888326 0.14212336
Axis point -49.92760098 0.00000000 -556.43201864
Rotation angle (degrees) 0.09460322
Shift along axis -0.06061737
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.0051, angle = 0.00208 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00025158 0.00164664 0.91152378
0.00025151 0.99999992 0.00004347 -0.00097694
-0.00164665 -0.00004306 0.99999861 -0.09632562
Axis -0.02596375 0.98819909 0.15095838
Axis point -54.45102565 0.00000000 -552.99383516
Rotation angle (degrees) 0.09547259
Shift along axis -0.03917315
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00149, angle = 0.000539 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00025298 0.00165314 0.90996399
0.00025292 0.99999992 0.00003682 -0.00054432
-0.00165315 -0.00003641 0.99999860 -0.09505311
Axis -0.02188862 0.98825882 0.15121310
Axis point -53.85744964 0.00000000 -550.02936251
Rotation angle (degrees) 0.09584372
Shift along axis -0.03482906
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.00987, angle = 0.00217 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999855 -0.00027138 0.00165636 0.91393998
0.00027137 0.99999992 0.00000382 0.01126700
-0.00165636 -0.00000337 0.99999860 -0.10875280
Axis -0.00214232 0.98684042 0.16168302
Axis point -64.37851777 0.00000000 -551.82025306
Rotation angle (degrees) 0.09616800
Shift along axis -0.00842270
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00769, angle = 0.00364 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999858 -0.00024404 0.00163809 0.91141864
0.00024395 0.99999993 0.00005819 -0.00180229
-0.00163811 -0.00005779 0.99999863 -0.09583047
Axis -0.03499216 0.98848246 0.14723444
Axis point -53.75047435 0.00000000 -555.41480167
Rotation angle (degrees) 0.09494977
Shift along axis -0.04778358
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0418, angle = 0.0043 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00029067 0.00164546 0.93539456
0.00029067 0.99999992 -0.00000006 -0.03683939
-0.00164547 0.00000053 0.99999861 -0.09178184
Axis 0.00017681 0.98475308 0.17395789
Axis point -49.80525752 0.00000000 -568.51654982
Rotation angle (degrees) 0.09573787
Shift along axis -0.05207848
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.00547, angle = 0.00165 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999854 -0.00030164 0.00165397 0.93813689
0.00030168 0.99999991 -0.00002521 -0.03768542
-0.00165397 0.00002570 0.99999860 -0.09385574
Axis 0.01513917 0.98365861 0.17940608
Axis point -51.96949133 0.00000000 -567.60944803
Rotation angle (degrees) 0.09633990
Shift along axis -0.03970526
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.44
steps = 36, shift = 0.0281, angle = 0.0112 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999865 -0.00021723 0.00160035 0.92809850
0.00021700 0.99999992 0.00014345 -0.08305035
-0.00160039 -0.00014310 0.99999868 -0.05336496
Axis -0.08836753 0.98704567 0.13391049
Axis point -18.56544248 0.00000000 -570.49917130
Rotation angle (degrees) 0.09289783
Shift along axis -0.17113438
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.39
steps = 40, shift = 0.0825, angle = 0.0106 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999853 -0.00027793 0.00166447 0.91313007
0.00027796 0.99999992 -0.00001815 0.01683270
-0.00166447 0.00001861 0.99999858 -0.11321118
Axis 0.01089021 0.98628424 0.16469611
Axis point -68.34168638 0.00000000 -548.60789717
Rotation angle (degrees) 0.09669322
Shift along axis 0.00790057
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.38
steps = 40, shift = 0.00448, angle = 0.00326 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00025875 0.00164725 0.91272657
0.00025870 0.99999992 0.00003250 0.00491168
-0.00164726 -0.00003207 0.99999861 -0.10220141
Axis -0.01935821 0.98770367 0.15513453
Axis point -58.88683283 0.00000000 -553.80468408
Rotation angle (degrees) 0.09555560
Shift along axis -0.02867244
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.008, angle = 0.000841 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00024410 0.00164781 0.90899754
0.00024404 0.99999993 0.00003301 0.00301972
-0.00164783 -0.00003261 0.99999861 -0.09869671
Axis -0.01969209 0.98901608 0.14649035
Axis point -56.82960293 0.00000000 -551.33437163
Rotation angle (degrees) 0.09546176
Shift along axis -0.02937163
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9912, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.021, angle = 0.0058 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999850 -0.00029482 0.00167818 0.91312801
0.00029490 0.99999991 -0.00004913 0.02764992
-0.00167817 0.00004963 0.99999856 -0.12128324
Axis 0.02896793 0.98449917 0.17298049
Axis point -75.18471985 0.00000000 -543.61887636
Rotation angle (degrees) 0.09766614
Shift along axis 0.03269312
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 40, shift = 0.00783, angle = 0.00469 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00026602 0.00165017 0.91367348
0.00026598 0.99999992 0.00002209 0.01019442
-0.00165018 -0.00002165 0.99999861 -0.10675741
Axis -0.01308082 0.98717120 0.15912858
Axis point -62.41722592 0.00000000 -553.58542822
Rotation angle (degrees) 0.09577707
Shift along axis -0.01887612
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 40, shift = 0.0445, angle = 0.00625 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999851 -0.00032833 0.00166665 0.94111097
0.00032844 0.99999990 -0.00006588 -0.02354092
-0.00166663 0.00006643 0.99999858 -0.10694002
Axis 0.03891497 0.98039260 0.19317343
Axis point -62.86953599 0.00000000 -564.89356778
Rotation angle (degrees) 0.09740108
Shift along axis -0.00711401
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.027, angle = 0.00923 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999859 -0.00023843 0.00163678 0.91163341
0.00023832 0.99999993 0.00006422 -0.00861177
-0.00163680 -0.00006383 0.99999863 -0.09108417
Axis -0.03867688 0.98882040 0.14400804
Axis point -50.18685067 0.00000000 -555.66339214
Rotation angle (degrees) 0.09484166
Shift along axis -0.05689148
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9915, correlation about mean = 0.9947, overlap = 38.45
steps = 28, shift = 0.0667, angle = 0.00311 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00028872 0.00164547 0.94109545
0.00028865 0.99999991 0.00004560 -0.07876365
-0.00164549 -0.00004512 0.99999861 -0.06244821
Axis -0.02714053 0.98459371 0.17273861
Axis point -25.52709773 0.00000000 -570.07295461
Rotation angle (degrees) 0.09575437
Shift along axis -0.11387923
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.43
steps = 36, shift = 0.0302, angle = 0.00418 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999855 -0.00031202 0.00164773 0.94257498
0.00031206 0.99999991 -0.00002350 -0.04027646
-0.00164773 0.00002402 0.99999861 -0.09737615
Axis 0.01416721 0.98243788 0.18605134
Axis point -53.61972353 0.00000000 -572.46945089
Rotation angle (degrees) 0.09609579
Shift along axis -0.04433243
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.38
steps = 28, shift = 0.0574, angle = 0.00134 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999854 -0.00029496 0.00165576 0.92125253
0.00029498 0.99999991 -0.00000972 0.01064598
-0.00165576 0.00001021 0.99999860 -0.11736236
Axis 0.00592507 0.98448234 0.17538364
Axis point -69.92872871 0.00000000 -556.46869068
Rotation angle (degrees) 0.09636339
Shift along axis -0.00464417
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.42
steps = 40, shift = 0.0466, angle = 0.00201 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999853 -0.00031744 0.00165522 0.94049563
0.00031750 0.99999991 -0.00003657 -0.02807937
-0.00165521 0.00003710 0.99999860 -0.10255876
Axis 0.02184948 0.98186402 0.18832324
Axis point -58.49422033 0.00000000 -568.59841637
Rotation angle (degrees) 0.09658842
Shift along axis -0.02633498
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 44, shift = 0.0308, angle = 0.00636 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00023985 0.00164794 0.90733680
0.00023978 0.99999993 0.00004245 0.00167549
-0.00164796 -0.00004206 0.99999861 -0.09580990
Axis -0.02536692 0.98925832 0.14396003
Axis point -54.61429868 0.00000000 -550.09103496
Rotation angle (degrees) 0.09544599
Shift along axis -0.03515165
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9946, overlap = 38.39
steps = 40, shift = 0.012, angle = 0.00394 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999853 -0.00027659 0.00166261 0.91328638
0.00027661 0.99999992 -0.00001371 0.01572732
-0.00166261 0.00001417 0.99999859 -0.11224100
Axis 0.00826865 0.98640819 0.16410519
Axis point -67.51102058 0.00000000 -549.34410426
Rotation angle (degrees) 0.09657295
Shift along axis 0.00464587
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.38
steps = 40, shift = 0.00496, angle = 0.00329 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999857 -0.00025627 0.00164564 0.91246307
0.00025621 0.99999992 0.00003731 0.00364483
-0.00164565 -0.00003688 0.99999861 -0.10090276
Axis -0.02226726 0.98784834 0.15381754
Axis point -57.84548513 0.00000000 -554.08607556
Rotation angle (degrees) 0.09544832
Shift along axis -0.03223812
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9913, correlation about mean = 0.9947, overlap = 38.39
steps = 40, shift = 0.00664, angle = 0.000725 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999856 -0.00024925 0.00165177 0.90922473
0.00024920 0.99999993 0.00002875 0.00276121
-0.00165178 -0.00002834 0.99999860 -0.09887594
Axis -0.01708442 0.98866381 0.14917101
Axis point -56.91728074 0.00000000 -550.21596995
Rotation angle (degrees) 0.09572519
Shift along axis -0.02755310
> fitmap #477 inMap #407
Fit map MotB_PG.mrc copy in map Cage-top-withPflA.mrc copy using 47878 points
correlation = 0.9914, correlation about mean = 0.9947, overlap = 38.45
steps = 28, shift = 0.0713, angle = 0.00481 degrees
Position of MotB_PG.mrc copy (#477) relative to Cage-top-withPflA.mrc copy
(#407) coordinates:
Matrix rotation and translation
0.99999855 -0.00031670 0.00164311 0.95885013
0.00031674 0.99999991 -0.00002040 -0.06274158
-0.00164311 0.00002092 0.99999862 -0.07993276
Axis 0.01234824 0.98184963 0.18925863
Axis point -40.69311917 0.00000000 -584.07982907
Rotation angle (degrees) 0.09588354
Shift along axis -0.06489064
> select subtract #477
Nothing selected
> select add #478
2 models selected
> select subtract #478
Nothing selected
> show #!460 models
> select add #460
2 models selected
> hide #!478 models
> close #478
> select subtract #460
Nothing selected
> hide #!393 models
> hide #!393-410 models
> show #!442 models
> show #!442-459 models
> show #!424-441 models
> show #!423 models
> ui tool show "Hide Dust"
> surface dust #15 size 4.3
> surface dust #423 size 25.78
> color #423 #bf1eb5ff models
> color #423 #f510dcff models
> color #423 #ff10e4ff models
> color #423 #ff8ef9ff models
> color #423 #ff73fcff models
> color #424 #f0f308ff models
> color #424 #f3eb00ff models
> color #424 #fff600ff models
> color #424-441 #fff600ff models
> color #424 #fffb00ff models
> color #424 #fffc79ff models
> color #424 #fffb00ff models
> lighting soft
> color #424 #f5e94eff models
> color #424 #548fe3ff models
> color #424 #5787e2ff models
> color #424 #6eecf6ff models
> color #424 #70eff7ff models
> color #442 #b2b2b2ff models
> color #442-477 #b2b2b2ff models
> hide #!443 models
> show #!443 models
> color #424 #0096ffff models
> color #424 #76d6ffff models
> color #424 #00fdffff models
> color #424 #7dfdf4ff models
> color #424 #00fdffff models
> color #424 #74fbffff models
> set bgColor white
> set bgColor #ffffff00
> color #424 #74fbffff models
> color #424 #fdff18ff models
> color #424 #f9ff26ff models
[Repeated 1 time(s)]
> color #424-441 #fdff18ff models
> color #424 #f9ff26ff models
> show #!356-373 models
> color #356 #4a9ed2ff models
> color #356-373 #4a9ed2ff models
> show #!281-298 models
> show #!239-2259 models
> hide #!299 models
> hide #300 models
> hide #301 models
> hide #302 models
> hide #303 models
> hide #!304 models
> hide #!305 models
> hide #!306 models
> hide #!307 models
> hide #!308 models
> hide #!309 models
> hide #!310 models
> hide #!311 models
> hide #!313 models
> show #!313 models
> hide #!314 models
> hide #!312 models
> hide #!313 models
> hide #!315 models
> hide #!316 models
> hide #!336 models
> hide #!336-355 models
> hide #!374 models
> hide #!375 models
> hide #!376 models
> hide #392 models
> hide #!411 models
> hide #!412 models
> hide #!413 models
> hide #!414 models
> hide #419 models
> hide #420 models
> hide #!421 models
> hide #!422 models
> hide #!261 models
> hide #!262 models
> hide #!263 models
> hide #!393-410 models
> hide #!360 models
> show #!360 models
> hide #!317-335 models
> show #!177 models
> show #!177-216 models
> turn x 90
[Repeated 2 time(s)]
> hide #!260 models
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/updated-
> Using_PilNO_maps.cxs" includeMaps true
——— End of log from Mon Aug 14 10:43:10 2023 ———
opened ChimeraX session
> hide #!15 models
> hide #!177-216 models
> show #!188 models
> hide #!188 models
> hide #!239-259 models
> hide #!264-2298 models
> show #!10 models
> show #!16 models
> show #!19 models
> show #!26 models
> show #!32-36 models
> show #!42-47 models
> show #!54-59 models
> show #!113-115 models
> hide #!115 models
> show #!115 models
> show #!177-216 models
> color #114 #60a36aff models
> color #114 #5da36dff models
> show #!239-259 models
> show #!264-298 models
> hide #!264 models
> hide #!265 models
> hide #!266 models
> hide #!267 models
> hide #!268 models
> hide #!269 models
> hide #!270 models
> hide #!280 models
> hide #!279 models
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> hide #!277 models
> hide #!276 models
> hide #!275 models
> hide #!274 models
> hide #!273 models
> hide #!272 models
> hide #!271 models
> show #!312-313 models
> show #!316 models
> show #!356-373 models
> show #!377-391 models
> show #!415-418 models
> show #!423-477 models
> view orient
> turn x 90
[Repeated 2 time(s)]
> turn y 10
[Repeated 7 time(s)]
> turn z -0.1
[Repeated 4 time(s)]
> view name Side1
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/updated-
> Using_PilNO_maps.cxs includeMaps true
> color #312 #5d8ea1d4 models
> color #312 #5d8ea1ff models
> color #10 #5d8ea1ff models
> color #16 #5d8ea1ff models
> color #19 #5d8ea1ff models
> color #26 #5d8ea1ff models
> color #32-36 #5d8ea1ff models
> color #42-47 #5d8ea1ff models
> color #54-59 #5d8ea1ff models
> color #239-259 #5d8ea1ff models
> color #356-373 #5d8ea1ff models
> color #377-391 #5d8ea1ff models
> color #415-418 #5d8ea1ff models
> color #422-459 #5d8ea1ff models
> save /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/2-updated-
> Using_PilNO_maps.cxs includeMaps true
> hide #!10 models
> hide #!16 models
> hide #!26 models
> hide #!32-36 models
> hide #!42-47 models
> hide #!54-59 models
> hide #!19 models
> hide #!113-477 models
> show #!10 models
> volume #!10 showOutlineBox true
> ui mousemode right "crop volume"
> volume #10 region 105,0,0,239,239,239
> volume #10 region 123,0,0,239,239,239
> volume #10 region 104,0,0,239,239,239
> show #!16 models
> volume #16 region 55,0,0,239,239,239
> hide #!10 models
> volume #16 region 80,0,0,239,239,239
> volume #!16 showOutlineBox true
> volume #16 region 21,0,0,239,239,239
> volume #16 region 112,0,0,239,239,239
> show #!10 models
> hide #!10 models
> show #!10 models
> hide #!10 models
> volume #16 region 100,0,0,239,239,239
> volume #16 region 103,0,0,239,239,239
> volume #16 region 104,0,0,239,239,239
> hide #!16 models
> show #!19 models
> volume #19 region 104,0,0,239,239,239
> show #!10 models
> show #!16 models
> hide #!10 models
> show #!113 models
> hide #!113 models
> show #!114 models
> hide #!114 models
> show #!115 models
> hide #!115 models
> show #!312 models
> volume #312 region 104,0,0,239,239,239
> show #!113 models
> volume #312 region 110,0,0,239,239,239
> volume #312 region 115,0,0,239,239,239
> volume #312 region 120,0,0,239,239,239
> volume #16 region 120,0,0,239,239,239
> volume #10 region 120,0,0,239,239,239
> show #!10 models
> volume #19 region 120,0,0,239,239,239
> show #!313 models
> volume #313 region 120,0,0,239,239,239
> show #!313 models
> hide #!312 models
> hide #!10 models
> hide #!16 models
> hide #!19 models
> hide #!113 models
> volume #313 region 59,0,0,119,119,119
> show #!312 models
> hide #!312 models
> volume #313 region 61,0,0,119,119,119
> show #!316 models
> hide #!313 models
> volume #316 region 113,0,0,239,239,239
> volume #316 region 120,0,0,239,239,239
> hide #!316 models
> show #!313 models
> volume #313 region 62,0,0,119,119,119
> volume #313 region 59,0,0,119,119,119
> show #!312 models
> show #!311 models
> hide #!311 models
> show #!316 models
> show #!10 models
> volume #!10,312-313,316 showOutlineBox false
> show #!16 models
> volume #!10,16,312-313,316 showOutlineBox false
> show #!19 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!36 models
> show #!26 models
> show #!42 models
> hide #!42 models
> show #!42 models
> show #!43 models
> hide #!43 models
> show #!54 models
> show #!55 models
> show #!56 models
> show #!57 models
> show #!58 models
> show #!59 models
> show #!47 models
> hide #!47 models
> show #103 models
> hide #103 models
> show #!113 models
> show #!114 models
> show #!115 models
> show #!177 models
> show #!178 models
> show #!179 models
> turn y 10
> turn y 1
[Repeated 2 time(s)]
> show #!180 models
> show #!181 models
> show #!182 models
> show #!183 models
> show #!184 models
> show #!185 models
> show #!186 models
> show #!187 models
> show #!188 models
> show #!189 models
> show #!190 models
> show #!191 models
> show #!192 models
> show #!193 models
> show #!216 models
> hide #!216 models
> show #!215 models
> hide #!215 models
> show #!215 models
> show #!214 models
> show #!213 models
> show #!212 models
> show #!194 models
> show #!247 models
> hide #!247 models
> show #!239 models
> show #!240 models
> show #!241 models
> show #!242 models
> show #!243 models
> show #!244 models
> show #!245 models
> show #!246 models
> show #!247 models
> show #!248 models
> show #!249 models
> show #!250 models
> show #!259 models
> show #!281 models
> show #!282 models
> show #!283 models
> show #!284 models
> show #!285 models
> show #!299 models
> hide #!299 models
> show #!298 models
> show #!297 models
> show #!296 models
> show #!295 models
> show #!294 models
> show #!293 models
> show #!356 models
> hide #!356 models
> show #!357 models
> hide #!357 models
> show #!373 models
> hide #!373 models
> show #!368 models
> hide #!368 models
> show #!367 models
> hide #!367 models
> show #!365 models
> show #!366 models
> show #!364 models
> show #!363 models
> show #!362 models
> show #!361 models
> show #!360 models
> show #!359 models
> show #!358 models
> show #!357 models
> show #!391 models
> hide #!391 models
> show #!418 models
> hide #!418 models
> show #!415 models
> hide #!415 models
> show #!388 models
> show #!387 models
> show #!386 models
> show #!385 models
> show #!384 models
> show #!383 models
> show #!382 models
> show #!381 models
> show #!380 models
> show #!379 models
> show #!378 models
> hide #!378 models
> hide #!379 models
> show #!379 models
> show #!443 models
> show #!442 models
> show #!444 models
> show #!445 models
> show #!446 models
> show #!447 models
> show #!448 models
> show #!449 models
> show #!450 models
> show #!459 models
> show #!458 models
> hide #!458 models
> show #!458 models
> show #!460 models
> hide #!460 models
> show #!461 models
> show #!462 models
> show #!463 models
> show #!464 models
> show #!465 models
> show #!466 models
> show #!467 models
> show #!468 models
> show #!469 models
> show #!470 models
> show #!471 models
> show #!472 models
> show #!473 models
> hide #!473 models
> hide #!472 models
> color #460 #5da36dff models
> color #460 #5d8ea1ff models
> color #460-477 #5d8ea1ff models
> show #!427 models
> hide #!427 models
> show #!429 models
> hide #!429 models
> show #!439 models
> show #!437 models
> color #437 #f9ff26ff models
> color #424-441 #f9ff26ff models
> show #!441 models
> hide #!441 models
> show #!440 models
> hide #!440 models
> hide #!439 models
> show #!439 models
> hide #!439 models
> show #!438 models
> hide #!438 models
> show #!436 models
> show #!435 models
> show #!434 models
> show #!433 models
> show #!432 models
> show #!431 models
> show #!430 models
> show #!429 models
> show #!428 models
> show #!427 models
> show #!426 models
> show #!425 models
> hide #!425 models
> show #!425 models
> show #!424 models
> hide #!424 models
> show #!423 models
> color #423 #9a20afff models
> color #423 #af4197ff models
> color #423 #ff5fddff models
> color #423 #ff9affff models
> select add #423
2 models selected
> select subtract #423
Nothing selected
> select add #423
2 models selected
> select subtract #423
Nothing selected
> select add #423
2 models selected
> ui mousemode right "crop volume"
> volume #115 region 9,0,0,239,239,239
> select subtract #423
Nothing selected
> hide #!423 models
> hide #!1-477 models
> show #!423 models
> volume #!423 showOutlineBox true
> volume #423 region 86,0,0,179,179,179
> volume #!423 showOutlineBox false
> show #!10 models
> show #!16 models
> show #!19 models
> show #!26 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!36 models
> show #!42 models
> hide #!42 models
> show #!47 models
> show #!46 models
> hide #!46 models
> hide #!47 models
> show #!43 models
> hide #!43 models
> show #!44 models
> hide #!44 models
> show #!54 models
> hide #!54 models
> show #!55 models
> show #!56 models
> show #!57 models
> show #!58 models
> show #!59 models
> show #!54 models
> hide #!54 models
> show #!113 models
> show #!114 models
> show #!115 models
> show #!177 models
> show #!178 models
> show #!179 models
> show #!180 models
> show #!181 models
> show #!182 models
> show #!183 models
> show #!184 models
> show #!185 models
> show #!186 models
> show #!187 models
> show #!188 models
> show #!189 models
> show #!190 models
> show #!191 models
> show #!192 models
> show #!193 models
> show #!194 models
> show #!216 models
> hide #!216 models
> show #!215 models
> hide #!215 models
> show #!215 models
> show #!214 models
> show #!213 models
> show #!212 models
> show #!211 models
> show #!210 models
> hide #!210 models
> hide #!211 models
> show #!239 models
> show #!240 models
> show #!241 models
> show #!242 models
> show #!243 models
> show #!244 models
> show #!245 models
> show #!246 models
> show #!247 models
> show #!248 models
> show #!249 models
> show #!250 models
> show #!259 models
> show #!281 models
> show #!282 models
> show #!283 models
> show #!284 models
> show #!298 models
> show #!297 models
> show #!296 models
> show #!295 models
> show #!294 models
> show #!312 models
> show #!313 models
> show #!316 models
> show #!356 models
> hide #!356 models
> show #!357 models
> hide #!357 models
> show #!358 models
> show #!359 models
> show #!360 models
> show #!361 models
> show #!362 models
> show #!363 models
> show #!364 models
> show #!365 models
> show #!366 models
> show #!367 models
> hide #!367 models
> show #!377 models
> hide #!377 models
> show #!378 models
> hide #!378 models
> show #!379 models
> hide #!379 models
> show #!380 models
> show #!381 models
> show #!382 models
> show #!383 models
> show #!384 models
> show #!385 models
> show #!386 models
> show #!387 models
> show #!388 models
> show #!389 models
> hide #!389 models
> show #!424 models
> hide #!424 models
> show #!428 models
> show #!427 models
> show #!426 models
> hide #!426 models
> show #!429 models
> show #!430 models
> show #!431 models
> show #!432 models
> show #!433 models
> show #!434 models
> show #!435 models
> show #!436 models
> show #!437 models
> hide #!437 models
> show #!459 models
> show #!458 models
> hide #!458 models
> show #!442 models
> show #!443 models
> show #!444 models
> show #!445 models
> show #!446 models
> show #!447 models
> show #!448 models
> show #!449 models
> show #!450 models
> show #!460 models
> hide #!460 models
> show #!462 models
> show #!463 models
> show #!464 models
> show #!465 models
> show #!466 models
> show #!467 models
> show #!468 models
> show #!469 models
> show #!470 models
> show #!471 models
> show #!472 models
> hide #!472 models
> view name Side2
> color #281 #ffd70bff models
> color #281 #e5b97fff models
> color #281-298 #e5b97fff models
> color #177-216 #e5b97fff models
> hide #!443 models
> show #!443 models
> hide #!448 models
> show #!448 models
> hide #!450 models
> show #!450 models
> color #443 #7188afff models
> color #443 #4a56afff models
> color #443 #54afa9ff models
> color #443 #0051b9ff models
> color #443 #2061b9ff models
> color #443 #1b5db9ff models
> hide #!450 models
> show #!450 models
> color #450 #1b5db9ff models
> color #450 #4366b9ff models
> color #450 #003eb9ff models
> color #450 #0011b9ff models
> color #450 #345eb9ff models
> color #450 #5873b9ff models
> color #450 #5f72b9ff models
> color #450 #5cb9b6ff models
> color #450 #60b2b9ff models
> color #450 #63a9b9ff models
> color #450 #3a626cff models
> color #450 #3d6873ff models
> color #450 #5693a2ff models
> color #450 #1c53a2ff models
> color #450 #2c83ffff models
> color #450 #2369ccff models
> color #450 #205eb7ff models
> color #450 #b79a6bff models
> color #450 #9d77b7ff models
> color #450 #5d7ab7ff models
> color #450 #5e7ab7ff models
> color #450 #567db7ff models
> color #450 #5c86b7ff models
> color #450 #5d85b7ff models
> color #450 #6693caff models
> color #450 #557ba8ff models
> color #450 #557ba9ff models
> color #450 #567ba9ff models
> color #442-459 #567ba9ff models
> color #377-391 #567ba9ff models
> color #415-418 #567ba9ff models
> color #356-373 #567ba9ff models
> color #312 #567ba9ff models
> color #239-259 #567ba9ff models
> color #54-59 #567ba9ff models
> color #42-46 #567ba9ff models
> color #42-47 #567ba9ff models
> color #32-36 #567ba9ff models
> color #26 #567ba9ff models
> color #19 #567ba9ff models
> color #16 #567ba9ff models
> color #10 #567ba9ff models
> color #460 #e5b97fff models
> color #460-477 #e5b97fff models
> color #460-477 #567ba9ff models
> view Side2
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/3-updated-
> Using_PilNO_maps.cxs" includeMaps true
> save /Users/shoichi/Desktop/Side-view.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/4-updated-
> Using_PilNO_maps.cxs" includeMaps true
——— End of log from Mon Aug 14 13:50:25 2023 ———
opened ChimeraX session
> history
Unknown command: history
> command history
Unknown command: command history
> history
Unknown command: history
> toolshed show
Must specify 6 comma-separated integers, got 0,0,0250,250,250
Must specify 6 comma-separated integers, got 0,0,0250,250,250
> volume #10 region 0,0,0,250,250,250
> volume #16 region 0,0,0,250,250,250
> volume #19 region 0,0,0,250,250,250
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/New_FliF.mrc
Opened New_FliF.mrc as #478, grid size 256,256,256, pixel 2.1, shown at level
0.0109, step 1, values float32
> volume gaussian #478 sDev 3
Opened New_FliF.mrc gaussian as #479, grid size 256,256,256, pixel 2.1, shown
at step 1, values float32
> ui mousemode right "translate selected models"
> ui tool show "Fit in Map"
> select add #479
2 models selected
> view matrix models #479,1,0,0,14.594,0,1,0,285.57,0,0,1,187.83
> view matrix models #479,1,0,0,233.92,0,1,0,261.5,0,0,1,184.35
> color #114 #5da36d4b models
> view matrix models #479,1,0,0,263.34,0,1,0,268.37,0,0,1,182.71
> fitmap #479 inMap #114
Fit map New_FliF.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167758
points
correlation = 0.9253, correlation about mean = 0.6533, overlap = 480.2
steps = 48, shift = 7.1, angle = 0.0725 degrees
Position of New_FliF.mrc gaussian (#479) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99952882 0.03069414 0.00012186 238.30594887
-0.03069414 0.99952882 -0.00002577 254.83185831
-0.00012259 0.00002202 0.99999999 151.43948092
Axis 0.00077841 0.00398209 -0.99999177
Axis point 8439.03947028 -7638.15358790 0.00000000
Rotation angle (degrees) 1.75893536
Shift along axis -150.23797136
> fitmap #479 inMap #114
Fit map New_FliF.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167758
points
correlation = 0.9253, correlation about mean = 0.6532, overlap = 480.2
steps = 24, shift = 0.000992, angle = 0.0561 degrees
Position of New_FliF.mrc gaussian (#479) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99955839 0.02971542 0.00014048 238.55640944
-0.02971541 0.99955840 -0.00001091 254.55677910
-0.00014074 0.00000673 0.99999999 151.44759727
Axis 0.00029666 0.00473183 -0.99998876
Axis point 8707.80581284 -7900.12506611 0.00000000
Rotation angle (degrees) 1.70283769
Shift along axis -150.17060457
> fitmap #479 inMap #114
Fit map New_FliF.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167758
points
correlation = 0.9253, correlation about mean = 0.6532, overlap = 480.2
steps = 24, shift = 0.00297, angle = 0.0479 degrees
Position of New_FliF.mrc gaussian (#479) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99958289 0.02887953 0.00015019 238.77234711
-0.02887953 0.99958290 0.00000585 254.32099773
-0.00014996 -0.00001019 0.99999999 151.45170190
Axis -0.00027775 0.00519662 -0.99998646
Axis point 8950.82100807 -8137.15246942 0.00000000
Rotation angle (degrees) 1.65492772
Shift along axis -150.19435826
> fitmap #479 inMap #114
Fit map New_FliF.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167758
points
correlation = 0.9253, correlation about mean = 0.6532, overlap = 480.2
steps = 24, shift = 0.00481, angle = 0.0418 degrees
Position of New_FliF.mrc gaussian (#479) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99960369 0.02815038 0.00015150 238.96306484
-0.02815038 0.99960370 0.00002371 254.11470058
-0.00015077 -0.00002797 0.99999999 151.45194426
Axis -0.00091786 0.00536890 -0.99998517
Axis point 9173.32787893 -8354.75890597 0.00000000
Rotation angle (degrees) 1.61313490
Shift along axis -150.30471627
> fitmap #479 inMap #114
Fit map New_FliF.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167758
points
correlation = 0.9253, correlation about mean = 0.6532, overlap = 480.2
steps = 24, shift = 0.00201, angle = 0.037 degrees
Position of New_FliF.mrc gaussian (#479) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99962164 0.02750540 0.00014524 239.13374643
-0.02750541 0.99962165 0.00004096 253.93196191
-0.00014406 -0.00004494 0.99999999 151.45274520
Axis -0.00156138 0.00525881 -0.99998495
Axis point 9378.54366959 -8556.51363655 0.00000000
Rotation angle (degrees) 1.57616616
Shift along axis -150.48846452
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/New_FlhA.mrc
Opened New_FlhA.mrc as #480, grid size 256,256,256, pixel 2.1, shown at level
0.00509, step 1, values float32
> volume gaussian #480 sDev 3
Opened New_FlhA.mrc gaussian as #481, grid size 256,256,256, pixel 2.1, shown
at step 1, values float32
> select add #28
4 models selected
> select add #29
6 models selected
> select subtract #28
4 models selected
> select subtract #29
2 models selected
> select subtract #479
Nothing selected
> select clear
> select #481
2 models selected
> select #481
2 models selected
> select clear
> select add #481
2 models selected
> view matrix models #481,1,0,0,296.29,0,1,0,284.38,0,0,1,45.447
> view matrix models #481,1,0,0,284.99,0,1,0,266.58,0,0,1,173.43
> fitmap #481 inMap #114
Fit map New_FlhA.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167725
points
correlation = 0.7224, correlation about mean = 0.4495, overlap = 61.34
steps = 64, shift = 17.1, angle = 0.989 degrees
Position of New_FlhA.mrc gaussian (#481) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99878943 0.04919023 -0.00007370 233.60423926
-0.04919028 0.99878908 -0.00083039 260.17540800
0.00003276 0.00083301 0.99999965 145.08084981
Axis 0.01690538 -0.00108199 -0.99985651
Axis point 5400.88378525 -4664.67316199 0.00000000
Rotation angle (degrees) 2.81993677
Shift along axis -141.39237177
> fitmap #481 inMap #114
Fit map New_FlhA.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167725
points
correlation = 0.7224, correlation about mean = 0.4495, overlap = 61.34
steps = 40, shift = 0.016, angle = 0.316 degrees
Position of New_FlhA.mrc gaussian (#481) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99850297 0.05469734 0.00013281 232.15948491
-0.05469719 0.99850258 -0.00090146 261.74702701
-0.00018192 0.00089285 0.99999958 145.12564123
Axis 0.01639996 0.00287655 -0.99986137
Axis point 4906.44972231 -4152.29229813 0.00000000
Rotation angle (degrees) 3.13592236
Shift along axis -140.54518885
> fitmap #481 inMap #114
Fit map New_FlhA.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167725
points
correlation = 0.7224, correlation about mean = 0.4496, overlap = 61.34
steps = 60, shift = 0.0355, angle = 0.815 degrees
Position of New_FlhA.mrc gaussian (#481) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99762347 0.06890121 0.00016391 228.60676491
-0.06890098 0.99762286 -0.00113378 265.81990454
-0.00024164 0.00111979 0.99999934 145.07273565
Axis 0.01635145 0.00294254 -0.99986198
Axis point 3974.89098470 -3214.14151898 0.00000000
Rotation angle (degrees) 3.95141856
Shift along axis -140.53247416
> fitmap #481 inMap #114
Fit map New_FlhA.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using 167725
points
correlation = 0.7224, correlation about mean = 0.4496, overlap = 61.34
steps = 44, shift = 0.00674, angle = 0.402 degrees
Position of New_FlhA.mrc gaussian (#481) relative to Hpwt-L0.08-Global-MS.mrc
(#114) coordinates:
Matrix rotation and translation
0.99711920 0.07585048 0.00012127 226.88269441
-0.07585043 0.99711914 -0.00037063 267.73003752
-0.00014903 0.00036036 0.99999992 145.25084057
Axis 0.00481858 0.00178181 -0.99998680
Axis point 3641.78648631 -2861.99582115 0.00000000
Rotation angle (degrees) 4.35014633
Shift along axis -143.67862605
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/New_IM.mrc
Opened New_IM.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.0261, step 1, values float32
> volume #482 level 0.008107
> select subtract #481
Nothing selected
> select add #482
2 models selected
> view matrix models #482,1,0,0,271.96,0,1,0,262.58,0,0,1,-15.749
> view matrix models #482,1,0,0,263,0,1,0,280.83,0,0,1,188.9
> close #482
> volume #312 region 0,0,0,250,250,250
> volume #316 region 0,0,0,250,250,250
> volume #423 region 0,0,0,179,179,179
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/PflBC13.mrc
Opened PflBC13.mrc as #482, grid size 256,256,256, pixel 2.1, shown at level
0.00615, step 1, values float32
> select add #482
2 models selected
> select subtract #482
Nothing selected
> select add #482
2 models selected
> view matrix models #482,1,0,0,269.29,0,1,0,258.93,0,0,1,-76.634
> view matrix models #482,1,0,0,272.52,0,1,0,256.13,0,0,1,184.78
> fitmap #482 inMap #423
Fit map PflBC13.mrc in map PflB13c-clean.mrc using 167771 points
correlation = 0.925, correlation about mean = 0.7121, overlap = 667.7
steps = 68, shift = 13, angle = 6.46 degrees
Position of PflBC13.mrc (#482) relative to PflB13c-clean.mrc (#423)
coordinates:
Matrix rotation and translation
0.96570877 -0.25962775 0.00000136 196.38184807
0.25962775 0.96570877 0.00000083 56.85385216
-0.00000153 -0.00000045 1.00000000 24.69406245
Axis -0.00000247 0.00000555 1.00000000
Axis point -117.03612447 771.85593008 0.00000000
Rotation angle (degrees) 15.04797555
Shift along axis 24.69389327
> fitmap #482 inMap #423
Fit map PflBC13.mrc in map PflB13c-clean.mrc using 167771 points
correlation = 0.925, correlation about mean = 0.7121, overlap = 667.8
steps = 24, shift = 0.00886, angle = 0.00141 degrees
Position of PflBC13.mrc (#482) relative to PflB13c-clean.mrc (#423)
coordinates:
Matrix rotation and translation
0.96571058 -0.25962101 0.00001247 196.37631318
0.25962101 0.96571058 0.00002158 56.84849086
-0.00001764 -0.00001760 1.00000000 24.69414480
Axis -0.00007546 0.00005799 1.00000000
Axis point -117.01858012 771.85845295 0.00000000
Rotation angle (degrees) 15.04757576
Shift along axis 24.68262223
> hide #!423 models
> select subtract #482
Nothing selected
> volume #313 region 0,0,0,120,120,120
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right select
> ui mousemode right zoom
> save "/Users/shoichitachiyama/OneDrive - Yale
> University/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/06-updated-
> Using_PilNO_maps.cxs" includeMaps true
——— End of log from Mon Aug 14 20:25:29 2023 ———
opened ChimeraX session
> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/New_IM_Bottom2.mrc
Opened New_IM_Bottom2.mrc as #483, grid size 256,256,256, pixel 2.1, shown at
level 0.0197, step 1, values float32
> volume #483 level 0.007203
> volume gaussian #483 sDev 5
Opened New_IM_Bottom2.mrc gaussian as #484, grid size 256,256,256, pixel 2.1,
shown at step 1, values float32
> volume #484 level 0.0072
> select add #484
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #484,1,0,0,280.91,0,1,0,271.6,0,0,1,34.454
> view matrix models #484,1,0,0,281.27,0,1,0,262.71,0,0,1,169.63
> view matrix models #484,1,0,0,272.05,0,1,0,267.57,0,0,1,169.45
> ui tool show "Fit in Map"
> fitmap #484 inMap #114
Fit map New_IM_Bottom2.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using
425738 points
correlation = 0.8834, correlation about mean = 0.543, overlap = 308.1
steps = 72, shift = 6.91, angle = 0.316 degrees
Position of New_IM_Bottom2.mrc gaussian (#484) relative to Hpwt-L0.08-Global-
MS.mrc (#114) coordinates:
Matrix rotation and translation
0.99929998 0.03740961 -0.00026147 236.70763083
-0.03740978 0.99929976 -0.00070846 256.91056923
0.00023478 0.00071775 0.99999971 148.84452580
Axis 0.01905822 -0.00663122 -0.99979638
Axis point 6958.98232542 -6271.62016336 0.00000000
Rotation angle (degrees) 2.14435471
Shift along axis -146.00662271
> fitmap #484 inMap #114
Fit map New_IM_Bottom2.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using
425738 points
correlation = 0.8834, correlation about mean = 0.5429, overlap = 308.1
steps = 60, shift = 0.0064, angle = 0.21 degrees
Position of New_IM_Bottom2.mrc gaussian (#484) relative to Hpwt-L0.08-Global-
MS.mrc (#114) coordinates:
Matrix rotation and translation
0.99915645 0.04106455 -0.00030671 235.77220055
-0.04106475 0.99915625 -0.00069480 257.92859528
0.00027792 0.00070681 0.99999971 148.84206023
Axis 0.01706304 -0.00711715 -0.99982908
Axis point 6372.14060452 -5671.53211832 0.00000000
Rotation angle (degrees) 2.35389559
Shift along axis -146.62934658
> fitmap #484 inMap #114
Fit map New_IM_Bottom2.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using
425738 points
correlation = 0.8834, correlation about mean = 0.5429, overlap = 308.1
steps = 60, shift = 0.00451, angle = 0.259 degrees
Position of New_IM_Bottom2.mrc gaussian (#484) relative to Hpwt-L0.08-Global-
MS.mrc (#114) coordinates:
Matrix rotation and translation
0.99896069 0.04557892 -0.00031092 234.61340363
-0.04557913 0.99896048 -0.00070201 259.19494383
0.00027860 0.00071545 0.99999971 148.83510678
Axis 0.01554725 -0.00646605 -0.99985823
Axis point 5781.40299375 -5065.66985413 0.00000000
Rotation angle (degrees) 2.61276128
Shift along axis -146.84238096
> fitmap #484 inMap #114
Fit map New_IM_Bottom2.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using
425738 points
correlation = 0.8834, correlation about mean = 0.5429, overlap = 308.1
steps = 64, shift = 0.00206, angle = 0.316 degrees
Position of New_IM_Bottom2.mrc gaussian (#484) relative to Hpwt-L0.08-Global-
MS.mrc (#114) coordinates:
Matrix rotation and translation
0.99869431 0.05108410 -0.00031446 233.20845628
-0.05108433 0.99869407 -0.00074209 260.75539526
0.00027614 0.00075719 0.99999968 148.82504150
Axis 0.01467278 -0.00577990 -0.99987564
Axis point 5202.17605122 -4474.41175681 0.00000000
Rotation angle (degrees) 2.92854890
Shift along axis -146.89185821
> fitmap #484 inMap #114
Fit map New_IM_Bottom2.mrc gaussian in map Hpwt-L0.08-Global-MS.mrc using
425738 points
correlation = 0.8834, correlation about mean = 0.5429, overlap = 308.1
steps = 64, shift = 0.00351, angle = 0.335 degrees
Position of New_IM_Bottom2.mrc gaussian (#484) relative to Hpwt-L0.08-Global-
MS.mrc (#114) coordinates:
Matrix rotation and translation
0.99837849 0.05692270 -0.00044908 231.75174558
-0.05692303 0.99837829 -0.00074756 262.41315614
0.00040580 0.00077191 0.99999962 148.78774658
Axis 0.01334524 -0.00750830 -0.99988276
Axis point 4703.64918053 -3971.96734212 0.00000000
Rotation angle (degrees) 3.26358682
Shift along axis -147.64779684
> color #114 #5da36d4a models
> hide #!114 models
> color #479 #5da36d4b models
> color #479 #5da36d models transparency 0
> color #484 #dbdbdb4d models
> color #484 #dbdbdba6 models
> color #484 #dbdbdba5 models
> select clear
> color #484 #dbdbdb4d models
> show #!472 models
> show #!472-477 models
> show #!460 models
> show #!461 models
> show #!451-458 models
> show #!424-441 models
> show #!415 models
> show #!416 models
> show #!417 models
> show #!418 models
> show #!389 models
> show #!390 models
> show #!391 models
> show #!377 models
> show #!378 models
> show #!379 models
> show #!356-373 models
> show #!281-298 models
> show #!251-258 models
> show #!195-216 models
> show #!42 models
> show #!43 models
> show #!44 models
> show #!45 models
> show #!46 models
> show #!47 models
> color #481 #929292 models transparency 0
> save /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/06-updated-
> Using_PilNO_maps.cxs includeMaps true
> view Side1
> view top1
Expected an objects specifier or a view name or a keyword
> view Top1
Expected an objects specifier or a view name or a keyword
> turn x 90
> ui tool show "Side View"
> save /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/06-updated-
> Using_PilNO_maps.cxs includeMaps true
——— End of log from Tue Aug 15 06:51:52 2023 ———
opened ChimeraX session
> save /Users/shoichi/Desktop/Top1.png supersample 2 transparentBackground
> true
> ui tool show "Side View"
> save /Users/shoichi/Desktop/Top1.png supersample 2 transparentBackground
> true
> view name Top2
> view Side1
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb
Chain information for PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb #485
---
Chain | Description
A | No description available
B | No description available
> hide #!477 models
> hide #!1-485 models
> show #485 models
> show #!356 models
> hide #!356 models
> show #!357 models
> hide #!357 models
> show #!373 models
> hide #!373 models
> show #!372 models
> show #!371 models
> show #!370 models
> show #!369 models
> show #!368 models
> show #!367 models
> show #!366 models
> show #!364 models
> show #!365 models
> select add #485
2768 atoms, 2827 bonds, 336 residues, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #485,1,0,0,-170.7,0,1,0,270.57,0,0,1,322.63
> ui mousemode right "rotate selected models"
> view matrix models
> #485,0.80457,0.58102,-0.12282,-193.28,0.20647,-0.079761,0.9752,307.65,0.55681,-0.80997,-0.18414,363
> ui mousemode right "translate selected models"
> view matrix models
> #485,0.80457,0.58102,-0.12282,94.729,0.20647,-0.079761,0.9752,417.89,0.55681,-0.80997,-0.18414,505.03
> ui mousemode right "rotate selected models"
> view matrix models
> #485,0.95092,0.13696,-0.27746,113.64,0.30161,-0.21,0.93002,423.41,0.069111,-0.96806,-0.241,512.04
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #485,0.95092,0.13696,-0.27746,114.72,0.30161,-0.21,0.93002,393.75,0.069111,-0.96806,-0.241,494.96
> color #372 #567ba980 models
> view matrix models
> #485,0.95092,0.13696,-0.27746,172.91,0.30161,-0.21,0.93002,392.62,0.069111,-0.96806,-0.241,476.67
> view matrix models
> #485,0.95092,0.13696,-0.27746,167.02,0.30161,-0.21,0.93002,407.3,0.069111,-0.96806,-0.241,480.07
> view matrix models
> #485,0.95092,0.13696,-0.27746,174.07,0.30161,-0.21,0.93002,411.97,0.069111,-0.96806,-0.241,481.27
> ui tool show "Fit in Map"
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1515, steps = 156
shifted from previous position = 11.8
rotated from previous position = 17.7 degrees
atoms outside contour = 117, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
-0.91424281 -0.23462891 -0.33031705 400.29941626
0.25468673 0.30125563 -0.91890136 325.97985790
0.31511069 -0.92422633 -0.21566393 372.49320665
Axis -0.00657436 -0.79686378 0.60412325
Axis point 146.36395566 0.00000000 362.91689290
Rotation angle (degrees) 156.11012762
Shift along axis -37.36145113
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1515, steps = 40
shifted from previous position = 0.0649
rotated from previous position = 0.865 degrees
atoms outside contour = 121, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
-0.91090401 -0.22874690 -0.34340754 400.30793423
0.26907741 0.30163906 -0.91466454 326.01531197
0.31281181 -0.92557481 -0.21321361 372.48908823
Axis -0.01324456 -0.79661979 0.60433558
Axis point 143.79880912 0.00000000 363.98067136
Rotation angle (degrees) 155.67717630
Shift along axis -39.90374146
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1515, steps = 28
shifted from previous position = 0.0773
rotated from previous position = 0.311 degrees
atoms outside contour = 120, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
-0.90970792 -0.22672243 -0.34789141 400.28431459
0.27427209 0.30096813 -0.91334167 325.94410156
0.31177927 -0.92629106 -0.21160945 372.50949984
Axis -0.01563087 -0.79627143 0.60473754
Axis point 142.88235534 0.00000000 364.44501295
Rotation angle (degrees) 155.52949492
Shift along axis -40.52628878
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1515, steps = 40
shifted from previous position = 0.0358
rotated from previous position = 0.602 degrees
atoms outside contour = 123, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
-0.90725139 -0.22257903 -0.35686620 400.30774068
0.28425424 0.30088145 -0.91031306 325.95329141
0.30999102 -0.92732353 -0.20970608 372.50731339
Axis -0.02030432 -0.79598553 0.60497501
Axis point 141.10379840 0.00000000 365.20686671
Rotation angle (degrees) 155.23561212
Shift along axis -42.22446433
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1515, steps = 28
shifted from previous position = 0.0539
rotated from previous position = 0.302 degrees
atoms outside contour = 124, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
-0.90606320 -0.22054190 -0.36112427 400.31173567
0.28925511 0.30007652 -0.90900251 326.00699145
0.30883806 -0.92807077 -0.20809542 372.49689367
Axis -0.02264412 -0.79559998 0.60539897
Axis point 140.22577482 0.00000000 365.69270804
Rotation angle (degrees) 155.09959706
Shift along axis -42.92662798
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1515, steps = 28
shifted from previous position = 0.0317
rotated from previous position = 0.0935 degrees
atoms outside contour = 126, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
-0.90572820 -0.22039610 -0.36205247 400.29552742
0.28974764 0.30149166 -0.90837717 325.96570026
0.30935858 -0.92764667 -0.20921025 372.50912098
Axis -0.02284600 -0.79602787 0.60482864
Axis point 140.07894247 0.00000000 365.56435389
Rotation angle (degrees) 155.05640470
Shift along axis -43.31874780
> ui mousemode right "rotate selected models"
> view matrix models
> #485,0.9976,-0.069221,-0.0018501,195.55,-0.012433,-0.20533,0.97861,408.23,-0.06812,-0.97624,-0.2057,488.43
> ui mousemode right "translate selected models"
> view matrix models
> #485,0.9976,-0.069221,-0.0018501,178.47,-0.012433,-0.20533,0.97861,404.15,-0.06812,-0.97624,-0.2057,486.56
> view matrix models
> #485,0.9976,-0.069221,-0.0018501,178.22,-0.012433,-0.20533,0.97861,406.36,-0.06812,-0.97624,-0.2057,486.9
> ui mousemode right "rotate selected models"
> view matrix models
> #485,-0.51886,-0.36668,0.77223,185.82,-0.85376,0.26806,-0.44636,397.1,-0.043328,-0.89089,-0.45214,485.08
> ui mousemode right "translate selected models"
> view matrix models
> #485,-0.51886,-0.36668,0.77223,183.64,-0.85376,0.26806,-0.44636,411.4,-0.043328,-0.89089,-0.45214,488.34
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1257, steps = 652
shifted from previous position = 2.97
rotated from previous position = 70.5 degrees
atoms outside contour = 405, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
0.82708422 -0.44975362 0.33712514 401.55498255
-0.54520139 -0.49605972 0.67578117 324.94392428
-0.13670083 -0.74272904 -0.65548947 375.39740315
Axis -0.94655891 0.31617974 -0.06369143
Axis point 0.00000000 314.35635962 74.13387368
Rotation angle (degrees) 131.47035767
Shift along axis -301.26435809
> fitmap #485 inMap #372
Fit molecule PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) to map
Cage-bottom.mrc copy (#372) using 2768 atoms
average map value = 0.1257, steps = 48
shifted from previous position = 0.161
rotated from previous position = 2.01 degrees
atoms outside contour = 413, contour level = 0.0093282
Position of PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb (#485) relative
to Cage-bottom.mrc copy (#372) coordinates:
Matrix rotation and translation
0.81059301 -0.45785518 0.36511313 401.42113696
-0.57265470 -0.48931864 0.65774908 324.85449161
-0.12249716 -0.74225056 -0.65883120 375.32835473
Axis -0.94154109 0.32793232 -0.07720607
Axis point 0.00000000 315.64401422 71.04313260
Rotation angle (degrees) 131.97285241
Shift along axis -300.40183317
> ui mousemode right "rotate selected models"
> view matrix models
> #485,-0.85961,-0.13838,0.49185,190.11,-0.51003,0.28995,-0.80981,422.84,-0.030546,-0.94698,-0.31982,495.14
> ui mousemode right "translate selected models"
> view matrix models
> #485,-0.85961,-0.13838,0.49185,193.28,-0.51003,0.28995,-0.80981,415.17,-0.030546,-0.94698,-0.31982,488.3
> view matrix models
> #485,-0.85961,-0.13838,0.49185,182.59,-0.51003,0.28995,-0.80981,417.12,-0.030546,-0.94698,-0.31982,489.21
> ui mousemode right "rotate selected models"
> view matrix models
> #485,-0.87073,-0.16196,0.46433,183.73,-0.48169,0.47102,-0.739,409.31,-0.099024,-0.86713,-0.48815,487.13
> view matrix models
> #485,-0.88118,-0.14786,0.44906,183.27,-0.46171,0.47342,-0.75013,409.28,-0.10168,-0.86834,-0.48544,487.17
> select subtract #485
Nothing selected
> show #!356 models
> show #!357 models
> show #!358 models
> show #!359 models
> show #!360 models
> show #!361 models
> show #!362 models
> show #!363 models
> show #!373 models
> show #!479 models
> select add #485
2768 atoms, 2827 bonds, 336 residues, 1 model selected
> view matrix models
> #485,-0.87989,-0.042529,0.47328,178.85,-0.42423,0.51902,-0.74206,407.37,-0.21408,-0.85371,-0.47472,486.56
> select subtract #485
Nothing selected
> view orient
> sym #485 C18 copies true center #479
Made 18 copies for PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb symmetry
C18
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb
Chain information for PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb #487
---
Chain | Description
A | No description available
B | No description available
> hide #!486 models
> show #485 models
> select add #487
2768 atoms, 2827 bonds, 336 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #487,1,0,0,68.2,0,1,0,280.15,0,0,1,379.88
> ui mousemode right "rotate selected models"
> view matrix models
> #487,-0.27457,-0.24739,0.9292,72.634,-0.94891,0.226,-0.22022,313.37,-0.15552,-0.94219,-0.2968,426.69
> view matrix models
> #487,-0.53752,-0.66227,0.52198,92.247,-0.81433,0.24697,-0.52523,314.48,0.21893,-0.70739,-0.67206,419.51
> view matrix models
> #487,-0.61726,-0.19992,0.76094,71.998,-0.72592,0.51767,-0.45284,303.01,-0.30338,-0.8319,-0.46466,423.42
> view matrix models
> #487,-0.91581,0.15574,0.3702,60.359,-0.23771,0.53278,-0.81218,304.56,-0.32372,-0.8318,-0.4509,423.33
> ui mousemode right "translate selected models"
> view matrix models
> #487,-0.91581,0.15574,0.3702,152.65,-0.23771,0.53278,-0.81218,323.71,-0.32372,-0.8318,-0.4509,523.55
> view matrix models
> #487,-0.91581,0.15574,0.3702,160.67,-0.23771,0.53278,-0.81218,343.64,-0.32372,-0.8318,-0.4509,465.68
> view matrix models
> #487,-0.91581,0.15574,0.3702,203,-0.23771,0.53278,-0.81218,349.5,-0.32372,-0.8318,-0.4509,477.24
> ui mousemode right "rotate selected models"
> view matrix models
> #487,-0.91061,0.17555,0.37412,202.17,-0.2451,0.49948,-0.83093,350.98,-0.33273,-0.84836,-0.4118,477.65
> view matrix models
> #487,-0.91884,0.14396,0.36742,203.49,-0.23347,0.55234,-0.80026,348.63,-0.31815,-0.82109,-0.4739,476.96
> ui mousemode right "translate selected models"
> view matrix models
> #487,-0.91884,0.14396,0.36742,200.65,-0.23347,0.55234,-0.80026,353.28,-0.31815,-0.82109,-0.4739,479.81
> view matrix models
> #487,-0.91884,0.14396,0.36742,204.63,-0.23347,0.55234,-0.80026,350.46,-0.31815,-0.82109,-0.4739,479.84
> ui mousemode right "rotate selected models"
> view matrix models
> #487,-0.92628,0.096525,0.36426,206.58,-0.23183,0.6161,-0.75278,347.57,-0.29708,-0.78173,-0.5483,478.73
> ui mousemode right "translate selected models"
> view matrix models
> #487,-0.92628,0.096525,0.36426,201.67,-0.23183,0.6161,-0.75278,356.13,-0.29708,-0.78173,-0.5483,479.31
> ui mousemode right "rotate selected models"
> view matrix models
> #487,-0.92041,0.13443,0.36713,200.11,-0.23299,0.56546,-0.79118,358.43,-0.31396,-0.81374,-0.48913,480.22
> ui mousemode right "translate selected models"
> view matrix models
> #487,-0.92041,0.13443,0.36713,203.24,-0.23299,0.56546,-0.79118,353.43,-0.31396,-0.81374,-0.48913,479.04
> ui mousemode right "rotate selected models"
> view matrix models
> #487,-0.9153,0.12926,0.38146,203.35,-0.2469,0.56819,-0.78498,353.29,-0.31821,-0.81268,-0.48816,478.99
> view matrix models
> #487,-0.90506,0.11939,0.40818,203.57,-0.27288,0.57312,-0.7727,353.02,-0.32619,-0.81073,-0.48613,478.9
> view matrix models
> #487,-0.8863,0.18384,0.42505,200.84,-0.2578,0.56661,-0.78262,353.34,-0.38472,-0.80322,-0.45479,478.42
> view matrix models
> #487,-0.93173,-0.19088,0.30894,216.79,-0.36204,0.55479,-0.74909,353.65,-0.028407,-0.8098,-0.58602,479.39
> ui mousemode right "translate selected models"
> view matrix models
> #487,-0.93173,-0.19088,0.30894,199.52,-0.36204,0.55479,-0.74909,349,-0.028407,-0.8098,-0.58602,479.01
> close #486
> view matrix models
> #487,-0.93173,-0.19088,0.30894,199.31,-0.36204,0.55479,-0.74909,349.41,-0.028407,-0.8098,-0.58602,479.02
> ui mousemode right "rotate selected models"
> view matrix models
> #487,-0.92951,-0.15171,0.33614,197.54,-0.36658,0.47971,-0.79718,352.77,-0.040306,-0.86421,-0.50151,480.66
> view matrix models
> #487,-0.92603,-0.22577,0.30249,200.76,-0.37743,0.54617,-0.74783,349.75,0.0036242,-0.80668,-0.59098,478.91
> view matrix models
> #487,-0.92865,-0.15998,0.33469,197.89,-0.36839,0.50371,-0.78139,351.69,-0.043584,-0.84893,-0.5267,480.21
> view matrix models
> #487,-0.75897,-0.2396,0.60543,199.22,-0.63385,0.48459,-0.60283,351.4,-0.14895,-0.84129,-0.51966,479.91
> ui mousemode right "translate selected models"
> view matrix models
> #487,-0.75897,-0.2396,0.60543,199.29,-0.63385,0.48459,-0.60283,349.5,-0.14895,-0.84129,-0.51966,479.34
> select add #485
5536 atoms, 5654 bonds, 672 residues, 2 models selected
> select subtract #487
2768 atoms, 2827 bonds, 336 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #485,-0.87909,-0.034314,0.47541,178.5,-0.43055,0.4851,-0.76112,408.87,-0.20451,-0.87378,-0.44122,487.14
> view matrix models
> #485,-0.87791,-0.024959,0.47818,178.1,-0.43059,0.47798,-0.76559,409.18,-0.20945,-0.87802,-0.43037,487.24
> select add #487
5536 atoms, 5654 bonds, 672 residues, 2 models selected
> select subtract #485
2768 atoms, 2827 bonds, 336 residues, 1 model selected
> view matrix models
> #487,-0.75867,-0.17032,0.62882,196.33,-0.62132,0.47943,-0.61977,349.81,-0.19591,-0.8609,-0.46955,479.82
> ui mousemode right "translate selected models"
> view matrix models
> #487,-0.75867,-0.17032,0.62882,197.43,-0.62132,0.47943,-0.61977,349.76,-0.19591,-0.8609,-0.46955,479.76
> select subtract #487
Nothing selected
> view orient
> sym #485 C18 copies true center #479
Made 18 copies for PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb symmetry
C18
> sym #487 C18 copies true center #479
Made 18 copies for PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb symmetry
C18
> hide #!486 models
> hide #!488 models
> color #372 #567ba9ff models
> show #!281 models
> show #!282 models
> show #!283 models
> show #!284 models
> show #!285 models
> show #!287 models
> show #!286 models
> show #!289 models
> show #!288 models
> show #!290 models
> show #!291 models
> show #!292 models
> show #!293 models
> show #!294 models
> show #!295 models
> show #!296 models
> show #!297 models
> show #!298 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/6ykm-
> MotA-only.pdb
Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
PflB/Manuscript-Start2023/Start/Working-
Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/6ykm-
MotA-only.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93
0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
2 messages similar to the above omitted
Chain information for 6ykm-MotA-only.pdb #489
---
Chain | Description
A B C D E | No description available
> select add #489
9770 atoms, 9945 bonds, 1275 residues, 1 model selected
> select subtract #489
Nothing selected
> select add #489
9770 atoms, 9945 bonds, 1275 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> show sel cartoons
> view matrix models #489,1,0,0,78.646,0,1,0,53.799,0,0,1,4.5864
> view matrix models #489,1,0,0,15.66,0,1,0,10.055,0,0,1,1.6901
> color #291 #e5b97f7c models
> color #291 #e5b97f7a models
> ui mousemode right "rotate selected models"
> view matrix models
> #489,0.99032,-0.0092473,0.13851,-33.112,0.026648,0.99189,-0.12431,54.14,-0.13623,0.1268,0.98253,5.4543
> view matrix models
> #489,0.98661,-0.010553,0.16278,-41.17,0.034068,0.98923,-0.14235,59.991,-0.15953,0.14599,0.97634,8.2218
> ui mousemode right "translate selected models"
> view matrix models
> #489,0.98661,-0.010553,0.16278,-39.104,0.034068,0.98923,-0.14235,58.77,-0.15953,0.14599,0.97634,7.845
> ui mousemode right "rotate selected models"
> view matrix models
> #489,0.94652,-0.29244,0.13628,80.202,0.30818,0.94452,-0.11362,-18.602,-0.095493,0.14954,0.98413,-15.473
> ui mousemode right "translate selected models"
> view matrix models
> #489,0.94652,-0.29244,0.13628,80.329,0.30818,0.94452,-0.11362,-20.12,-0.095493,0.14954,0.98413,-15.823
> view matrix models
> #489,0.94652,-0.29244,0.13628,80.226,0.30818,0.94452,-0.11362,-19.811,-0.095493,0.14954,0.98413,-15.755
> ui mousemode right "rotate selected models"
> view matrix models
> #489,0.94529,-0.30077,0.12637,87.379,0.30767,0.9507,-0.038758,-51.418,-0.10848,0.075517,0.99123,10.743
> view matrix models
> #489,0.94395,-0.3013,0.13486,84.598,0.30917,0.95011,-0.041363,-50.627,-0.11567,0.080739,0.99,11.566
> view matrix models
> #489,0.92685,-0.35329,0.12706,110.64,0.36061,0.93189,-0.039376,-60.419,-0.10449,0.082315,0.99111,7.2677
> ui mousemode right "translate selected models"
> view matrix models
> #489,0.92685,-0.35329,0.12706,109.36,0.36061,0.93189,-0.039376,-60.892,-0.10449,0.082315,0.99111,7.3016
> view matrix models
> #489,0.92685,-0.35329,0.12706,109.31,0.36061,0.93189,-0.039376,-60.936,-0.10449,0.082315,0.99111,7.3439
> view matrix models
> #489,0.92685,-0.35329,0.12706,109.16,0.36061,0.93189,-0.039376,-61,-0.10449,0.082315,0.99111,7.3182
> ui mousemode right "rotate selected models"
> view matrix models
> #489,0.94253,-0.32935,0.056333,124.27,0.33299,0.93979,-0.076875,-40.676,-0.027622,0.091215,0.99545,-20.278
> select subtract #489
Nothing selected
> show #!474 models
> hide #!474 models
> show #!475 models
> hide #!475 models
> show #!460 models
> show #!45 models
> hide #!45 models
> show #!34 models
> hide #!34 models
> show #!46 models
> hide #!46 models
> show #!42 models
> hide #!42 models
> show #!43 models
> select add #489
9770 atoms, 9945 bonds, 1275 residues, 1 model selected
> view matrix models
> #489,0.93083,-0.36176,-0.051794,181.68,0.36538,0.92403,0.11253,-119.84,0.0071508,-0.12367,0.9923,44.526
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #489,0.93083,-0.36176,-0.051794,176.13,0.36538,0.92403,0.11253,-114.94,0.0071508,-0.12367,0.9923,31.563
> hide #!43 models
> view matrix models
> #489,0.93083,-0.36176,-0.051794,179.74,0.36538,0.92403,0.11253,-116.59,0.0071508,-0.12367,0.9923,31.6
> view matrix models
> #489,0.93083,-0.36176,-0.051794,179.74,0.36538,0.92403,0.11253,-116.55,0.0071508,-0.12367,0.9923,31.599
> ui mousemode right "rotate selected models"
> view matrix models
> #489,0.87746,-0.4755,-0.062927,239.1,0.47965,0.87019,0.11274,-132.04,0.0011519,-0.1291,0.99163,35.512
> view matrix models
> #489,0.77569,-0.62631,-0.077758,327.03,0.63109,0.76856,0.10509,-139.03,-0.0060566,-0.13059,0.99142,38.246
> ui mousemode right "translate selected models"
> view matrix models
> #489,0.77569,-0.62631,-0.077758,327.61,0.63109,0.76856,0.10509,-139.99,-0.0060566,-0.13059,0.99142,38.29
> ui mousemode right "rotate selected models"
> view matrix models
> #489,0.7757,-0.62528,-0.085556,330.34,0.63109,0.76771,0.11108,-142.07,-0.0037705,-0.14015,0.99012,41.413
> show #!43 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/BbMotB_dimer_extended.pdb
Chain information for BbMotB_dimer_extended.pdb #490
---
Chain | Description
K | No description available
L | No description available
> select subtract #489
Nothing selected
> select add #490
4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #490,1,0,0,-59.749,0,1,0,-55.598,0,0,1,247.81
> color #460 #567ba976 models
> color #460 #567ba975 models
> color #43 #567ba957 models
> view matrix models #490,1,0,0,30.8,0,1,0,72.162,0,0,1,160.11
> view matrix models #490,1,0,0,222.71,0,1,0,284.18,0,0,1,278
> view matrix models #490,1,0,0,188.79,0,1,0,272.82,0,0,1,278.28
> ui mousemode right "rotate selected models"
> view matrix models
> #490,0.79884,0.10306,-0.59264,246.16,0.1553,0.91648,0.36871,235.93,0.58115,-0.38658,0.71612,278.95
> ui mousemode right "translate selected models"
> view matrix models
> #490,0.79884,0.10306,-0.59264,275.08,0.1553,0.91648,0.36871,206.01,0.58115,-0.38658,0.71612,275.54
> view matrix models
> #490,0.79884,0.10306,-0.59264,244.26,0.1553,0.91648,0.36871,166.25,0.58115,-0.38658,0.71612,375.33
> view matrix models
> #490,0.79884,0.10306,-0.59264,278.77,0.1553,0.91648,0.36871,201.06,0.58115,-0.38658,0.71612,378.39
> ui mousemode right "rotate selected models"
> view matrix models
> #490,0.78955,0.14034,-0.59743,276.64,0.10473,0.92841,0.3565,205.93,0.60469,-0.34404,0.71833,371.97
> view matrix models
> #490,0.86015,0.024064,-0.50947,273.4,0.097011,0.97293,0.20974,214.23,0.50072,-0.22983,0.83454,362.51
> ui mousemode right "translate selected models"
> view matrix models
> #490,0.86015,0.024064,-0.50947,265.41,0.097011,0.97293,0.20974,225.79,0.50072,-0.22983,0.83454,373.55
> ui mousemode right "rotate selected models"
> view matrix models
> #490,0.88211,0.0075298,-0.47098,261.71,0.087022,0.98006,0.17865,228.59,0.46294,-0.19858,0.86386,372.09
> ui mousemode right "translate selected models"
> view matrix models
> #490,0.88211,0.0075298,-0.47098,261.08,0.087022,0.98006,0.17865,228.92,0.46294,-0.19858,0.86386,373.66
> select subtract #490
Nothing selected
> select add #490
4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #490,0.86887,0.020279,-0.49462,263.09,0.12109,0.9601,0.25208,221.57,0.48,-0.27892,0.83175,381.93
> view matrix models
> #490,0.85671,0.034192,-0.51467,264.6,0.14804,0.93952,0.30883,216.31,0.4941,-0.34077,0.79984,388.76
> view matrix models
> #490,0.84746,0.010513,-0.53076,268.97,0.17173,0.94061,0.29284,215.13,0.50232,-0.33932,0.79532,388.17
> view matrix models
> #490,0.80978,-0.071414,-0.58237,284.34,0.25127,0.93915,0.23422,212.05,0.53021,-0.336,0.77845,386.45
> ui mousemode right "translate selected models"
> view matrix models
> #490,0.80978,-0.071414,-0.58237,287.88,0.25127,0.93915,0.23422,208.04,0.53021,-0.336,0.77845,384.97
> ui mousemode right "rotate selected models"
> view matrix models
> #490,0.84121,-0.11316,-0.52874,284.37,0.23415,0.95765,0.16757,213.31,0.48738,-0.26477,0.83208,378.38
> select subtract #490
Nothing selected
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/9memb-
> fliL.pdb
Chain information for 9memb-fliL.pdb #491
---
Chain | Description
A B D E H L | No description available
C | No description available
F G | No description available
> ui mousemode right "rotate selected models"
> select add #491
7209 atoms, 7301 bonds, 920 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #491,1,0,0,55.371,0,1,0,218.18,0,0,1,548.79
> hide sel atoms
> hide sel cartoons
> show sel cartoons
> view matrix models #491,1,0,0,-12.48,0,1,0,273.55,0,0,1,527.83
> view matrix models #491,1,0,0,-4.037,0,1,0,275.94,0,0,1,526.64
> view matrix models #491,1,0,0,-6.8941,0,1,0,271.02,0,0,1,494.29
> view matrix models #491,1,0,0,-1.692,0,1,0,269.27,0,0,1,495.4
> view matrix models #491,1,0,0,-1.0276,0,1,0,270.27,0,0,1,495.39
> fitmap #491 inMap #43
Fit molecule 9memb-fliL.pdb (#491) to map 1xFliL.mrc (#43) using 7209 atoms
average map value = 0.08352, steps = 60
shifted from previous position = 6.78
rotated from previous position = 13.3 degrees
atoms outside contour = 1051, contour level = 0.0066006
Position of 9memb-fliL.pdb (#491) relative to 1xFliL.mrc (#43) coordinates:
Matrix rotation and translation
-0.92220555 -0.32050242 0.21636803 629.11814835
0.36054458 -0.91492098 0.18145852 297.84331459
0.13980175 0.24535238 0.95930062 265.62528998
Axis 0.09282723 0.11123816 0.98944893
Axis point 278.91928354 187.46910276 0.00000000
Rotation angle (degrees) 159.86979573
Shift along axis 354.35349467
> fitmap #491 inMap #43
Fit molecule 9memb-fliL.pdb (#491) to map 1xFliL.mrc (#43) using 7209 atoms
average map value = 0.08351, steps = 64
shifted from previous position = 0.101
rotated from previous position = 0.102 degrees
atoms outside contour = 1067, contour level = 0.0066006
Position of 9memb-fliL.pdb (#491) relative to 1xFliL.mrc (#43) coordinates:
Matrix rotation and translation
-0.92207564 -0.32036564 0.21712295 629.08098522
0.36082287 -0.91450839 0.18297886 297.73626199
0.13994062 0.24706328 0.95884115 265.34843606
Axis 0.09307345 0.11209630 0.98932894
Axis point 278.90601515 187.32757116 0.00000000
Rotation angle (degrees) 159.86288445
Shift along axis 354.44276039
> select subtract #491
Nothing selected
> hide #!43 models
> show #!43 models
> view orient
> sym #489 C18 copies true center #479
Made 18 copies for 6ykm-MotA-only.pdb symmetry C18
> sym #490 C18 copies true center #479
Made 18 copies for BbMotB_dimer_extended.pdb symmetry C18
> sym #491 C18 copies true center #479
Made 18 copies for 9memb-fliL.pdb symmetry C18
> hide #!492 models
> hide #!493 models
> hide #!494 models
> color #460 #567ba9ff models
> hide #!460 models
> color #43 #567ba9ff models
> hide #!43 models
> hide #!356 models
> hide #!356-373 models
> hide #!281-298 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/7cg7.pdb
7cg7.pdb title:
Cryo-em structure of the flagellar MS ring with C34 symmetry from salmonella
[more info...]
Chain information for 7cg7.pdb #495
---
Chain | Description | UniProt
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h | flagellar M-ring protein | FLIF_SALTY 1-560
> select add #495
40290 atoms, 40698 bonds, 68 pseudobonds, 5100 residues, 2 models selected
> hide sel atoms
> show sel cartoons
> ui mousemode right "rotate selected models"
> view matrix models
> #495,0.88163,0.40604,0.24053,-201.41,0.46987,-0.80284,-0.36697,603.17,0.044108,0.43655,-0.8986,679.28
> view matrix models
> #495,0.87186,0.4687,0.14205,-175.42,0.48618,-0.86329,-0.13553,515.46,0.059108,0.18723,-0.98054,793.34
> ui mousemode right "translate selected models"
> view matrix models
> #495,0.87186,0.4687,0.14205,39.946,0.48618,-0.86329,-0.13553,629.65,0.059108,0.18723,-0.98054,851.8
> color #479 #5da36d54 models
> view matrix models
> #495,0.87186,0.4687,0.14205,17.853,0.48618,-0.86329,-0.13553,733.37,0.059108,0.18723,-0.98054,848.92
> view matrix models
> #495,0.87186,0.4687,0.14205,16.712,0.48618,-0.86329,-0.13553,733.06,0.059108,0.18723,-0.98054,835.28
> view matrix models
> #495,0.87186,0.4687,0.14205,17.155,0.48618,-0.86329,-0.13553,723.25,0.059108,0.18723,-0.98054,835.76
> ui mousemode right "rotate selected models"
> view matrix models
> #495,0.8749,0.47961,-0.067273,105.04,0.48075,-0.87686,0.00091364,669.27,-0.05855,-0.033141,-0.99773,956.31
> ui mousemode right "translate selected models"
> view matrix models
> #495,0.8749,0.47961,-0.067273,106,0.48075,-0.87686,0.00091364,669.57,-0.05855,-0.033141,-0.99773,948.54
> fitmap #495 inMap #479
Fit molecule 7cg7.pdb (#495) to map New_FliF.mrc gaussian (#479) using 40290
atoms
average map value = 0.02338, steps = 80
shifted from previous position = 8.38
rotated from previous position = 5.26 degrees
atoms outside contour = 10293, contour level = 0.011136
Position of 7cg7.pdb (#495) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.87850221 0.47711315 0.02442965 -197.62682137
0.47725513 -0.87876477 0.00002176 399.94016287
0.02147830 0.01164005 -0.99970154 733.26448142
Axis 0.96914950 0.24618893 0.01184318
Axis point 0.00000000 223.93589010 368.49028034
Rotation angle (degrees) 179.65656333
Shift along axis -84.38491491
> fitmap #495 inMap #479
Fit molecule 7cg7.pdb (#495) to map New_FliF.mrc gaussian (#479) using 40290
atoms
average map value = 0.02338, steps = 28
shifted from previous position = 0.0492
rotated from previous position = 0.0376 degrees
atoms outside contour = 10302, contour level = 0.011136
Position of 7cg7.pdb (#495) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.87819576 0.47768279 0.02431590 -197.66382535
0.47782348 -0.87845586 0.00002825 399.68009483
0.02137394 0.01159390 -0.99970431 733.34813270
Axis 0.96907045 0.24650257 0.01178787
Axis point 0.00000000 223.84942947 368.52358832
Rotation angle (degrees) 179.65809156
Shift along axis -84.38338729
> fitmap #495 inMap #479
Fit molecule 7cg7.pdb (#495) to map New_FliF.mrc gaussian (#479) using 40290
atoms
average map value = 0.02338, steps = 24
shifted from previous position = 0.0344
rotated from previous position = 0.0775 degrees
atoms outside contour = 10305, contour level = 0.011136
Position of 7cg7.pdb (#495) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.87755129 0.47886676 0.02429553 -197.80534099
0.47900461 -0.87781236 0.00016609 398.98226539
0.02140646 0.01149191 -0.99970480 733.37808089
Axis 0.96890418 0.24715503 0.01179304
Axis point 0.00000000 223.61244805 368.52598636
Rotation angle (degrees) 179.66512402
Shift along axis -84.39519405
> fitmap #495 inMap #479
Fit molecule 7cg7.pdb (#495) to map New_FliF.mrc gaussian (#479) using 40290
atoms
average map value = 0.02338, steps = 24
shifted from previous position = 0.0152
rotated from previous position = 0.0424 degrees
atoms outside contour = 10304, contour level = 0.011136
Position of 7cg7.pdb (#495) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.87719606 0.47951651 0.02430830 -197.92176239
0.47965401 -0.87745767 0.00019831 398.62586692
0.02142461 0.01148561 -0.99970448 733.37585972
Axis 0.96881252 0.24751364 0.01180213
Axis point 0.00000000 223.49167704 368.52411503
Rotation angle (degrees) 179.66623149
Shift along axis -84.42834305
> fitmap #495 inMap #479
Fit molecule 7cg7.pdb (#495) to map New_FliF.mrc gaussian (#479) using 40290
atoms
average map value = 0.02338, steps = 24
shifted from previous position = 0.000738
rotated from previous position = 0.0325 degrees
atoms outside contour = 10301, contour level = 0.011136
Position of 7cg7.pdb (#495) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.87692378 0.48001426 0.02430837 -197.99612009
0.48015132 -0.87718563 0.00022577 398.35517857
0.02143134 0.01147371 -0.99970447 733.37778149
Axis 0.96874226 0.24778837 0.01180474
Axis point 0.00000000 223.39942807 368.52340928
Rotation angle (degrees) 179.66737137
Shift along axis -84.44209106
> fitmap #495 inMap #479
Fit molecule 7cg7.pdb (#495) to map New_FliF.mrc gaussian (#479) using 40290
atoms
average map value = 0.02338, steps = 24
shifted from previous position = 0.0004
rotated from previous position = 0.0256 degrees
atoms outside contour = 10299, contour level = 0.011136
Position of 7cg7.pdb (#495) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.87670891 0.48040658 0.02430874 -198.05451249
0.48054333 -0.87697094 0.00024597 398.14244550
0.02143622 0.01146576 -0.99970446 733.37897034
Axis 0.96868681 0.24800497 0.01180677
Axis point 0.00000000 223.32674668 368.52284937
Rotation angle (degrees) 179.66818468
Shift along axis -84.45264984
> select subtract #495
Nothing selected
> hide #!479 models
> ui mousemode right zoom
> select add #495
40290 atoms, 40698 bonds, 68 pseudobonds, 5100 residues, 2 models selected
Alignment identifier is 1
> select #495/A-a,c,b,d-h
40290 atoms, 40698 bonds, 68 pseudobonds, 5100 residues, 2 models selected
> select clear
[Repeated 1 time(s)]
> select #495/L:355
7 atoms, 7 bonds, 1 residue, 1 model selected
> select add #495/L:303
16 atoms, 15 bonds, 1 pseudobond, 2 residues, 2 models selected
> select add #495/L:301
22 atoms, 20 bonds, 1 pseudobond, 3 residues, 2 models selected
> select add #495/L:302
31 atoms, 28 bonds, 1 pseudobond, 4 residues, 2 models selected
> select add #495/L:300
39 atoms, 35 bonds, 1 pseudobond, 5 residues, 2 models selected
> select add #495/L:299
47 atoms, 42 bonds, 1 pseudobond, 6 residues, 2 models selected
> select add #495/L:298
55 atoms, 49 bonds, 1 pseudobond, 7 residues, 2 models selected
> select add #495/L:297
64 atoms, 57 bonds, 1 pseudobond, 8 residues, 2 models selected
> select add #495/L:296
75 atoms, 67 bonds, 1 pseudobond, 9 residues, 2 models selected
> select subtract #495/L:296
64 atoms, 57 bonds, 1 pseudobond, 8 residues, 2 models selected
> select add #495/L:295
70 atoms, 62 bonds, 1 pseudobond, 9 residues, 2 models selected
> select add #495/L:294
81 atoms, 72 bonds, 1 pseudobond, 10 residues, 2 models selected
> select add #495/L:293
89 atoms, 79 bonds, 1 pseudobond, 11 residues, 2 models selected
> select subtract #495/L:293
81 atoms, 72 bonds, 1 pseudobond, 10 residues, 2 models selected
> select add #495/L:289
87 atoms, 77 bonds, 1 pseudobond, 11 residues, 2 models selected
> select add #495/L:304
94 atoms, 83 bonds, 1 pseudobond, 12 residues, 2 models selected
> select clear
Drag select of 1768 residues, 21 pseudobonds
> hide sel cartoons
Drag select of 1034 residues, 11 pseudobonds
> hide sel cartoons
Drag select of 747 residues, 10 pseudobonds
> hide sel cartoons
Drag select of 361 residues, 6 pseudobonds
> hide sel cartoons
Drag select of 628 residues, 9 pseudobonds
> hide sel cartoons
Drag select of 135 residues, 4 pseudobonds
> hide sel cartoons
Drag select of 13 residues
Drag select of 15 residues
Drag select of 28 residues
> hide sel cartoons
Drag select of 14 residues
> hide sel cartoons
Drag select of 9 residues
> hide sel cartoons
[Repeated 1 time(s)]
> select add #495/M:303
37564 atoms, 8 bonds, 61 pseudobonds, 4753 residues, 2 models selected
> select add #495/M:294
37575 atoms, 18 bonds, 61 pseudobonds, 4754 residues, 2 models selected
> select add #495/M:370
37586 atoms, 28 bonds, 61 pseudobonds, 4755 residues, 2 models selected
> select add #495/M:375
37593 atoms, 34 bonds, 61 pseudobonds, 4756 residues, 2 models selected
> select add #495/M:372
37601 atoms, 41 bonds, 61 pseudobonds, 4757 residues, 2 models selected
> select add #495/M:293
37609 atoms, 48 bonds, 61 pseudobonds, 4758 residues, 2 models selected
> select add #495/M:304
37616 atoms, 54 bonds, 61 pseudobonds, 4759 residues, 2 models selected
Drag select of 139 residues, 1 pseudobonds
> hide sel cartoons
Drag select of 8 residues
> select add #495/M:421
38776 atoms, 57 bonds, 62 pseudobonds, 4907 residues, 2 models selected
> select add #495/M:377
38784 atoms, 64 bonds, 62 pseudobonds, 4908 residues, 2 models selected
> select add #495/M:371
38791 atoms, 70 bonds, 62 pseudobonds, 4909 residues, 2 models selected
> select add #495/M:376
38800 atoms, 78 bonds, 62 pseudobonds, 4910 residues, 2 models selected
> select add #495/M:380
38804 atoms, 81 bonds, 62 pseudobonds, 4911 residues, 2 models selected
> hide sel cartoons
Drag select of 9 residues
> select add #495/K:286
38893 atoms, 84 bonds, 62 pseudobonds, 4921 residues, 2 models selected
Drag select of 20 residues
> hide sel cartoons
Drag select of 2 residues
[Repeated 1 time(s)]Drag select of 3 residues
> select add #495/K:437
39099 atoms, 95 bonds, 62 pseudobonds, 4949 residues, 2 models selected
> hide sel cartoons
Drag select of 1 residues
> hide sel cartoons
> select clear
[Repeated 1 time(s)]Drag select of 150 residues, 2 pseudobonds
> hide sel cartoons
> show sel cartoons
> show #!479 models
> ui mousemode right "translate selected models"
> view orient
> view matrix models
> #495,0.87456,0.48431,0.024283,72.233,0.48444,-0.87482,0.00032231,661.81,0.021399,0.011482,-0.99971,910.79
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/FliF_7cg7_mono.pdb"
> selectedOnly true
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/FliF_7cg7_mono.pdb
Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
PflB/Manuscript-Start2023/Start/Working-
Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/FliF_7cg7_mono.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93
0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
2 messages similar to the above omitted
Chain information for FliF_7cg7_mono.pdb #496
---
Chain | Description
L | No description available
> select add #495
40290 atoms, 40698 bonds, 68 pseudobonds, 5100 residues, 2 models selected
> select subtract #495
Nothing selected
> select add #495
40290 atoms, 40698 bonds, 68 pseudobonds, 5100 residues, 2 models selected
> hide #!495 models
> sym #496 C39 copies true center #479
Made 39 copies for FliF_7cg7_mono.pdb symmetry C39
> select subtract #495
Nothing selected
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/8fte.pdb
8fte.pdb title:
Cryoem strucutre of 22-mer RBM2 of the salmonella MS-ring [more info...]
Chain information for 8fte.pdb #498
---
Chain | Description | UniProt
A B C D E F G H I J K L M N O P Q R S T V W | flagellar M-ring protein | FLIF_SALTY 1-560
> hide #!497 models
> show #!497 models
> select add #498
14564 atoms, 14762 bonds, 22 pseudobonds, 2046 residues, 2 models selected
> view matrix models #498,1,0,0,3.3533,0,1,0,-2.5062,0,0,1,130.72
> view matrix models #498,1,0,0,-35.457,0,1,0,80.016,0,0,1,133.75
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #498,1,0,0,262.36,0,1,0,261.7,0,0,1,142.59
> hide sel atoms
> show sel cartoons
> view matrix models #498,1,0,0,266.12,0,1,0,264.04,0,0,1,142.86
> fitmap #498 inMap #479
Fit molecule 8fte.pdb (#498) to map New_FliF.mrc gaussian (#479) using 14564
atoms
average map value = 0.01807, steps = 48
shifted from previous position = 5.53
rotated from previous position = 0.169 degrees
atoms outside contour = 3019, contour level = 0.011136
Position of 8fte.pdb (#498) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.99999886 0.00150823 0.00012101 -4.09415326
-0.00150823 0.99999886 -0.00003399 -3.24322801
-0.00012107 0.00003381 0.99999999 -39.76714543
Axis 0.02239916 0.07997579 -0.99654511
Axis point -4235.64117852 3294.65750921 0.00000000
Rotation angle (degrees) 0.08671494
Shift along axis 39.27866890
> fitmap #498 inMap #479
Fit molecule 8fte.pdb (#498) to map New_FliF.mrc gaussian (#479) using 14564
atoms
average map value = 0.01807, steps = 44
shifted from previous position = 0.0103
rotated from previous position = 0.0752 degrees
atoms outside contour = 3014, contour level = 0.011136
Position of 8fte.pdb (#498) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
0.99999997 0.00019614 0.00013934 -3.74974706
-0.00019613 0.99999998 -0.00004497 -3.59371687
-0.00013935 0.00004494 0.99999999 -39.75945569
Axis 0.18365676 0.56933025 -0.80133218
Axis point -102875.25611726 46375.65114056 0.00000000
Rotation angle (degrees) 0.01402362
Shift along axis 29.12585305
> select subtract #498
Nothing selected
> show #487 models
> hide #487 models
> show #!486 models
> show #!488 models
> ui mousemode right zoom
> show #!492 models
> show #!493 models
> show #!494 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PilM-1.pdb
Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
PflB/Manuscript-Start2023/Start/Working-
Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PilM-1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93
0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
2 messages similar to the above omitted
Chain information for PilM-1.pdb #499
---
Chain | Description
A | No description available
> hide #!479 models
> hide #!492 models
> hide #!493 models
> hide #!494 models
> hide #!497 models
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> select subtract #499
Nothing selected
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> hide #!498 models
> ui mousemode right "translate selected models"
> view matrix models #499,1,0,0,-8.4811,0,1,0,18.347,0,0,1,-63.093
> ui mousemode right zoom
> color #499 #1d4ea2ff
> ui mousemode right "rotate selected models"
> view matrix models
> #499,0.32835,-0.71841,-0.61325,649.02,0.3141,-0.52925,0.78819,316.76,-0.8908,-0.45142,0.05188,646.07
Alignment identifier is 499/A
> select #499/A:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #499/A:1-2
40 atoms, 40 bonds, 2 residues, 1 model selected
> select #499/A:1-4
70 atoms, 70 bonds, 4 residues, 1 model selected
> select #499/A:1-4
70 atoms, 70 bonds, 4 residues, 1 model selected
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> select subtract #499
Nothing selected
> select #499/A:303
17 atoms, 16 bonds, 1 residue, 1 model selected
> select #499/A:303
17 atoms, 16 bonds, 1 residue, 1 model selected
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> view matrix models
> #499,-0.56339,0.61678,-0.5497,213.75,0.64722,-0.084057,-0.75766,652.41,-0.51352,-0.78263,-0.35183,873.07
> view matrix models
> #499,-0.47574,0.63345,-0.61026,213.99,0.69708,-0.1516,-0.70078,650.86,-0.53643,-0.75879,-0.36944,873.63
> view matrix models
> #499,0.71343,-0.69909,0.047886,322.42,-0.30238,-0.24549,0.92103,254.87,-0.63213,-0.67157,-0.38653,859.87
> view matrix models
> #499,0.4403,-0.14489,-0.88608,487.73,0.58324,-0.70416,0.40496,488.54,-0.68262,-0.6951,-0.22554,817.98
> view matrix models
> #499,0.55229,-0.6962,-0.45856,541.31,0.79888,0.5992,0.052442,27.709,0.23826,-0.3953,0.88712,105.92
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #499,0.64917,-0.64397,-0.40483,481.52,0.74111,0.65532,0.14599,-21.356,0.17127,-0.39479,0.90266,111.71
> view matrix models
> #499,0.98383,-0.050229,-0.17191,80.827,0.1344,0.8415,0.52327,-135.8,0.11838,-0.53791,0.83465,207.86
> view matrix models
> #499,-0.91847,-0.35942,0.16503,422.8,0.23251,-0.82826,-0.50983,949.67,0.31993,-0.42989,0.8443,122.38
> view matrix models
> #499,-0.94411,-0.091611,0.31664,255.79,-0.081163,-0.86642,-0.49268,1015.1,0.31948,-0.49084,0.81056,161.21
> view matrix models
> #499,-0.87483,-0.29744,0.38235,306.43,-0.15892,-0.5694,-0.80655,1020.9,0.45761,-0.76636,0.45086,390.25
> view matrix models
> #499,-0.21193,-0.96572,-0.14988,675.12,0.75574,-0.064711,-0.65167,584.81,0.61963,-0.25137,0.74355,31.164
> view matrix models
> #499,0.88264,-0.45775,-0.10684,247.98,0.43789,0.88336,-0.16713,53.609,0.17088,0.10074,0.98013,-128.86
> view matrix models
> #499,0.42953,-0.89879,-0.087581,509.2,0.89589,0.43631,-0.08381,131.5,0.11354,-0.042463,0.99263,-62.339
> view matrix models
> #499,0.62631,-0.76984,0.1228,339.72,0.64309,0.42118,-0.63957,392.99,0.44064,0.47954,0.75886,-254.61
> view matrix models
> #499,0.81478,-0.27212,0.51194,-53.17,0.50895,0.75861,-0.4068,184.85,-0.27766,0.592,0.7566,-174.26
> view matrix models
> #499,0.86463,-0.11563,0.48892,-120.05,0.35755,0.82528,-0.43712,194.74,-0.35295,0.55276,0.75491,-143.53
> view matrix models
> #499,-0.77439,0.27832,0.5682,-27.242,-0.56021,0.11581,-0.82022,805.06,-0.29408,-0.95348,0.06623,748.9
> view matrix models
> #499,0.97453,-0.072152,0.21235,-53.499,0.18609,0.78859,-0.58608,297.15,-0.12517,0.61067,0.78193,-218.86
> view matrix models
> #499,0.20352,-0.69115,0.69346,165.36,0.96893,0.040527,-0.24398,347.92,0.14052,0.72157,0.67793,-273.97
> view matrix models
> #499,0.35714,-0.5419,0.76079,48.978,0.80754,-0.23017,-0.54304,605.11,0.46938,0.80831,0.3554,-247.34
> view matrix models
> #499,0.61631,-0.6189,0.48695,139.4,0.64535,0.042551,-0.7627,600.65,0.45131,0.78432,0.42563,-260.46
> view matrix models
> #499,0.38297,0.45294,0.80509,-396.66,0.88121,0.082331,-0.4655,429.43,-0.27713,0.88773,-0.36761,124.68
> view matrix models
> #499,0.7767,0.32424,0.54,-311.37,0.58312,-0.04604,-0.81108,667.77,-0.23812,0.94486,-0.22483,39.396
> view matrix models
> #499,0.32866,0.60194,0.72777,-421.33,0.77764,0.26482,-0.57022,409.58,-0.53597,0.75335,-0.38106,233.01
> view matrix models
> #499,0.59304,0.14392,0.7922,-297.26,0.093919,0.96481,-0.24559,109.57,-0.79967,0.22005,0.55866,151.86
> view matrix models
> #499,0.51232,-0.72225,0.46463,210.37,0.82112,0.57045,-0.018649,62.911,-0.25158,0.39107,0.88531,-141.87
> view matrix models
> #499,0.62027,-0.58771,0.51948,113.09,0.70525,0.70775,-0.041377,33.508,-0.34335,0.39203,0.85348,-113.96
> view matrix models
> #499,0.32233,-0.78582,0.52782,247.3,0.90021,0.42691,0.085849,70.577,-0.29279,0.44747,0.84501,-143.37
> view matrix models
> #499,0.73321,-0.66295,-0.15135,378.84,-0.14376,-0.36866,0.91838,280.27,-0.66463,-0.65161,-0.36561,849.21
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #499,0.73321,-0.66295,-0.15135,384.23,-0.14376,-0.36866,0.91838,281.31,-0.66463,-0.65161,-0.36561,865.56
> show #!360 models
> hide #!360 models
> show #!386 models
> hide #!386 models
> show #!377 models
> hide #!377 models
> show #!391 models
> hide #!391 models
> show #!390 models
> hide #!390 models
> show #!378 models
> hide #!378 models
> show #!379 models
> hide #!379 models
> show #!381 models
> hide #!381 models
> show #!384 models
> hide #!384 models
> show #!387 models
> hide #!387 models
> show #!416 models
> ui mousemode right zoom
> hide #!416 models
> show #!417 models
> color #417 #567ba95f models
> color #417 #567ba95e models
> ui mousemode right "rotate selected models"
> view matrix models
> #499,-0.87669,0.023022,0.48051,138.35,-0.3575,0.63718,-0.68278,495.78,-0.32189,-0.77037,-0.55038,925.27
> view matrix models
> #499,-0.93342,-0.0083631,0.35869,207.87,-0.1865,0.86536,-0.46516,285.82,-0.3065,-0.50108,-0.8093,905.62
> ui mousemode right "translate selected models"
> view matrix models
> #499,-0.93342,-0.0083631,0.35869,209.9,-0.1865,0.86536,-0.46516,285.54,-0.3065,-0.50108,-0.8093,916.45
> view matrix models
> #499,-0.93342,-0.0083631,0.35869,193.37,-0.1865,0.86536,-0.46516,281.98,-0.3065,-0.50108,-0.8093,918.13
> ui mousemode right "rotate selected models"
> view matrix models
> #499,-0.74292,0.56803,-0.35413,183.32,0.6583,0.52416,-0.54028,306.01,-0.12127,-0.63451,-0.76334,924.79
> ui mousemode right "translate selected models"
> view matrix models
> #499,-0.74292,0.56803,-0.35413,199.02,0.6583,0.52416,-0.54028,308.24,-0.12127,-0.63451,-0.76334,923.91
> view matrix models
> #499,-0.74292,0.56803,-0.35413,200.54,0.6583,0.52416,-0.54028,309.05,-0.12127,-0.63451,-0.76334,923.81
> ui mousemode right "rotate selected models"
> view matrix models
> #499,-0.74901,0.52886,-0.39912,235.34,0.65901,0.53236,-0.53132,302.04,-0.068521,-0.66099,-0.74726,919.66
> open /Users/shoichi/Downloads/5eou.pdb
5eou.pdb title:
Pseudomonas aeruginosa pilm:PILN1-12 bound to atp [more info...]
Chain information for 5eou.pdb #500
---
Chain | Description | UniProt
A B | type 4 fimbrial biogenesis protein pilm,type 4 fimbrial biogenesis protein piln | G3XD28_PSEAE 1-354, G3XD30_PSEAE 358-369
Non-standard residues in 5eou.pdb #500
---
ATP — adenosine-5'-triphosphate
CL — chloride ion
MG — magnesium ion
NA — sodium ion
SO4 — sulfate ion
> select subtract #499
Nothing selected
> select add #500
5084 atoms, 5021 bonds, 22 pseudobonds, 803 residues, 3 models selected
Alignment identifier is 1
> select #500/A:9-10/B:10
18 atoms, 16 bonds, 3 residues, 1 model selected
> select add #500
5084 atoms, 5021 bonds, 22 pseudobonds, 803 residues, 3 models selected
> select subtract #500
Nothing selected
> select add #500
5084 atoms, 5021 bonds, 22 pseudobonds, 803 residues, 3 models selected
> hide #!488 models
> ui mousemode right "translate selected models"
> view matrix models #500,1,0,0,8.1532,0,1,0,207.58,0,0,1,2.7126
> view matrix models #500,1,0,0,-71.948,0,1,0,305.2,0,0,1,53.662
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.18739,0.97155,0.14481,-40.716,-0.97738,0.19913,-0.071209,837.35,-0.098019,-0.12819,0.98689,119.05
> view matrix models
> #500,0.40001,0.90598,0.13851,-97.743,-0.90864,0.41179,-0.069384,764.81,-0.1199,-0.098104,0.98793,119.52
> select clear
Drag select of 110 atoms, 321 residues, 8 pseudobonds, 89 bonds
> hide sel cartoons
> hide sel atoms
> hide sel surfaces
> hide sel cartoons
> hide sel atoms
> select clear
> select add #500
5084 atoms, 5021 bonds, 26 pseudobonds, 803 residues, 4 models selected
> color #500 #1b5db9ff
> view matrix models
> #500,0.90261,0.364,-0.22979,-73.011,-0.024185,0.57587,0.81719,271.39,0.42979,-0.73204,0.52858,161.93
> view matrix models
> #500,0.71749,0.39998,0.57028,-166.4,-0.60707,-0.042405,0.79352,610.77,0.34157,-0.91554,0.21239,291.29
> view matrix models
> #500,0.84089,0.48598,0.2382,-165.51,-0.38866,0.23595,0.89066,457.4,0.37664,-0.84152,0.38728,230.7
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.85671,-0.18195,-0.48265,113.55,0.47423,0.64588,0.59829,130.32,0.20287,-0.74144,0.63961,218.23
> view matrix models
> #500,0.28049,-0.19457,-0.93993,391.49,-0.9575,0.011813,-0.28818,912.54,0.067172,0.98082,-0.18298,24.471
> view matrix models
> #500,-0.078878,-0.96558,0.24786,465.55,0.62467,-0.24164,-0.74256,521.68,0.7769,0.096261,0.62223,-160.38
> view matrix models
> #500,-0.3465,0.65296,0.67349,108.71,0.7762,-0.20358,0.59672,215.63,0.52674,0.72952,-0.43629,-25.136
> view matrix models
> #500,-0.27949,-0.192,-0.94075,574.2,-0.8359,-0.4334,0.3368,849.86,-0.47239,0.88051,-0.039362,198.2
> view matrix models
> #500,-0.26701,-0.18744,-0.94529,569.83,-0.83864,-0.43804,0.32374,854.18,-0.47476,0.8792,-0.040236,199.45
> view matrix models
> #500,-0.10384,-0.16072,-0.98152,515.86,-0.84014,-0.51403,0.17306,899.15,-0.53234,0.84258,-0.081649,234.48
> view matrix models
> #500,0.024888,-0.16322,-0.98628,474.19,-0.80596,-0.58697,0.0768,921.79,-0.59145,0.79299,-0.14616,277.28
> view matrix models
> #500,0.38312,-0.066407,-0.92131,320.39,-0.63176,-0.74649,-0.2089,952.36,-0.67387,0.66208,-0.32795,368.1
> view matrix models
> #500,0.48274,0.096668,-0.87041,239.35,-0.52313,-0.76526,-0.37513,951.3,-0.70235,0.63643,-0.31885,382.43
> view matrix models
> #500,0.11924,0.23528,-0.96459,346.51,-0.11486,-0.96173,-0.24878,836.35,-0.9862,0.14046,-0.087653,546.12
> view matrix models
> #500,0.47784,-0.38377,-0.79018,335.37,-0.023259,-0.90473,0.42534,668.28,-0.87814,-0.18487,-0.44124,649.29
> ui mousemode right zoom
> select subtract #500
Nothing selected
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> select subtract #499
Nothing selected
> ui mousemode right "translate selected models"
> ui mousemode right zoom
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> select subtract #499
Nothing selected
> ui mousemode right "translate selected models"
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> view matrix models
> #499,-0.74901,0.52886,-0.39912,204.36,0.65901,0.53236,-0.53132,336.42,-0.068521,-0.66099,-0.74726,889.29
> ui mousemode right "rotate selected models"
> view matrix models
> #499,0.5578,-0.14927,0.81644,-198,0.28361,-0.8902,-0.35653,943.65,0.78002,0.43042,-0.45422,162.41
> view matrix models
> #499,0.096252,-0.49631,0.86279,14.376,0.81249,-0.46155,-0.35614,666.84,0.57498,0.73529,0.35882,-238.72
> view matrix models
> #499,0.58747,-0.61245,0.52894,103.02,0.64674,-0.037543,-0.76178,668.82,0.48641,0.78961,0.37405,-251.94
> view matrix models
> #499,0.71353,-0.51998,0.46957,63.661,0.6026,0.11358,-0.78992,622.84,0.35741,0.84659,0.39438,-261.04
> view matrix models
> #499,0.63303,-0.55184,0.54291,63.795,0.66499,0.028598,-0.74631,631.52,0.39631,0.83346,0.38507,-258.82
> view matrix models
> #499,0.56574,-0.67549,0.47291,154.95,0.74168,0.16624,-0.64982,522.72,0.36034,0.71838,0.59505,-282.77
> view matrix models
> #499,0.57803,-0.6463,0.49817,130.76,0.75422,0.19009,-0.6285,502.26,0.31151,0.73902,0.59733,-283.77
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #499,0.46145,-0.79167,-0.40042,553.29,0.85407,0.27427,0.44198,43.79,-0.24008,-0.54593,0.8027,284.47
> ui mousemode right "translate selected models"
> view matrix models
> #499,0.46145,-0.79167,-0.40042,569.51,0.85407,0.27427,0.44198,6.8245,-0.24008,-0.54593,0.8027,295.31
> ui mousemode right "rotate selected models"
> view matrix models
> #499,0.5166,-0.70323,-0.48846,555.3,0.74748,0.092157,0.65786,21.762,-0.41761,-0.70497,0.57326,481.41
> ui mousemode right "translate selected models"
> view matrix models
> #499,0.5166,-0.70323,-0.48846,556.52,0.74748,0.092157,0.65786,19.051,-0.41761,-0.70497,0.57326,481.38
> view matrix models
> #499,0.5166,-0.70323,-0.48846,567.4,0.74748,0.092157,0.65786,22.578,-0.41761,-0.70497,0.57326,482.08
> view matrix models
> #499,0.5166,-0.70323,-0.48846,571.42,0.74748,0.092157,0.65786,25.367,-0.41761,-0.70497,0.57326,483.03
> view matrix models
> #499,0.5166,-0.70323,-0.48846,572.11,0.74748,0.092157,0.65786,25.863,-0.41761,-0.70497,0.57326,483.04
> ui mousemode right "rotate selected models"
> view matrix models
> #499,0.59657,-0.59165,-0.54227,530.69,0.74361,0.15331,0.6508,3.1399,-0.30192,-0.79148,0.53141,515.23
> ui mousemode right "translate selected models"
> view matrix models
> #499,0.59657,-0.59165,-0.54227,533.31,0.74361,0.15331,0.6508,3.8222,-0.30192,-0.79148,0.53141,516.01
> view matrix models
> #499,0.59657,-0.59165,-0.54227,533.44,0.74361,0.15331,0.6508,3.3242,-0.30192,-0.79148,0.53141,516.01
> ui mousemode right "rotate selected models"
> view matrix models
> #499,0.55609,-0.79047,-0.25676,517.44,0.53835,0.10722,0.83587,-10.593,-0.6332,-0.60304,0.48518,511.91
> view matrix models
> #499,0.60103,-0.74007,-0.30177,504.99,0.55776,0.11796,0.82158,-13.21,-0.57243,-0.66211,0.48367,526.88
> view matrix models
> #499,0.64143,-0.74508,-0.1828,454.97,0.58482,0.32067,0.74509,-75.541,-0.49654,-0.58483,0.64143,420.8
> view matrix models
> #499,0.55103,-0.70733,0.44278,218.31,0.11636,0.59055,0.79857,-127.75,-0.82634,-0.38851,0.40771,483.98
> view matrix models
> #499,0.57261,-0.64846,0.50162,167.12,0.21398,0.70886,0.67211,-147.71,-0.79141,-0.27752,0.54466,378.65
> view matrix models
> #499,0.58774,-0.61263,0.52844,139.02,0.26353,0.7625,0.59088,-148.66,-0.76493,-0.20803,0.6096,319.75
> view matrix models
> #499,0.81011,-0.52455,0.26187,162.81,0.24003,0.70426,0.66814,-148.86,-0.53489,-0.47841,0.69643,361.41
> view matrix models
> #499,0.75369,-0.56052,0.34317,157.42,0.24367,0.72325,0.64617,-149.3,-0.61039,-0.40339,0.68169,348.39
> ui mousemode right zoom
> select subtract #499
Nothing selected
> close #500
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PilM-1.pdb
Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
PflB/Manuscript-Start2023/Start/Working-
Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PilM-1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93
0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
2 messages similar to the above omitted
Chain information for PilM-1.pdb #500
---
Chain | Description
A | No description available
> select add #500
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> select subtract #500
Nothing selected
> select add #500
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #500,1,0,0,-6.3069,0,1,0,-44.381,0,0,1,-53.855
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.96218,-0.14538,-0.23038,149.54,0.26024,0.74056,0.61956,-214.22,0.08054,-0.65608,0.75038,306.08
> view matrix models
> #500,-0.27273,-0.58562,0.76333,180.6,-0.73096,-0.38975,-0.56017,889.9,0.62555,-0.71074,-0.32177,638.17
> view matrix models
> #500,-0.38609,-0.20558,0.89926,-12.784,0.11248,-0.97807,-0.17531,845.61,0.91558,0.033465,0.40074,-3.9457
> view matrix models
> #500,0.96269,-0.011416,0.27038,-97.072,-0.19393,0.66772,0.71871,-140.06,-0.18874,-0.74433,0.64059,433.02
> view matrix models
> #500,0.93523,0.0054845,0.354,-131.03,-0.20842,0.81679,0.53797,-132.72,-0.28619,-0.5769,0.76503,331.84
> view matrix models
> #500,0.83088,-0.5237,0.18807,175.93,0.34512,0.75012,0.5641,-212.38,-0.43649,-0.4038,0.804,269.94
> view matrix models
> #500,0.83142,-0.54041,0.12921,205.23,0.31722,0.65256,0.68814,-212.73,-0.4562,-0.53115,0.71398,361.8
> view matrix models
> #500,0.63622,-0.72068,0.2754,261.46,0.34045,0.58259,0.73803,-205.88,-0.69232,-0.37579,0.61601,374.48
> ui mousemode right "translate selected models"
> view matrix models
> #500,0.63622,-0.72068,0.2754,283.14,0.34045,0.58259,0.73803,-202.56,-0.69232,-0.37579,0.61601,371.21
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.60491,-0.7473,0.27499,300.2,0.4432,0.60287,0.66341,-201.22,-0.66155,-0.27943,0.69589,294.44
> ui mousemode right "translate selected models"
> view matrix models
> #500,0.60491,-0.7473,0.27499,301.54,0.4432,0.60287,0.66341,-200.63,-0.66155,-0.27943,0.69589,287.91
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.61287,-0.74091,0.27467,297.52,0.41814,0.59904,0.68288,-201.91,-0.67048,-0.30367,0.67693,307
> show #!488 models
> ui mousemode right "translate selected models"
> view matrix models
> #500,0.61287,-0.74091,0.27467,297.14,0.41814,0.59904,0.68288,-202.58,-0.67048,-0.30367,0.67693,308.92
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.5935,-0.75551,0.27742,305.76,0.45631,0.59981,0.65727,-200,-0.66298,-0.2635,0.70073,281.45
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.59542,-0.75534,0.27376,306.73,0.44594,0.59415,0.66942,-200.34,-0.66829,-0.2765,0.6906,291.78
> view matrix models
> #500,0.57423,-0.6886,0.44283,218.09,0.33143,0.69011,0.64335,-211.1,-0.74861,-0.22266,0.6245,308.06
> view matrix models
> #500,0.5594,-0.68637,0.46473,211.48,0.40594,0.71567,0.56835,-206.85,-0.72269,-0.12928,0.67897,243.04
> view matrix models
> #500,0.77728,-0.58833,0.22294,222.46,0.4215,0.75002,0.50971,-202.09,-0.46709,-0.30222,0.83096,213.96
> ui mousemode right "translate selected models"
> view matrix models
> #500,0.77728,-0.58833,0.22294,221.05,0.4215,0.75002,0.50971,-202.36,-0.46709,-0.30222,0.83096,214.18
> view orient
> select subtract #500
Nothing selected
> show #!479 models
> sym #499 C18 copies true center #479
Made 18 copies for PilM-1.pdb symmetry C18
> sym #500 C18 copies true center #479
Made 18 copies for PilM-1.pdb symmetry C18
> turn x 90
[Repeated 2 time(s)]
> turn y 10
[Repeated 12 time(s)]
> turn y -10
[Repeated 5 time(s)]
> close #502
> show #500 models
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> select add #500
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> view matrix models
> #500,0.77728,-0.58833,0.22294,221.19,0.4215,0.75002,0.50971,-202.75,-0.46709,-0.30222,0.83096,219.82
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.7771,-0.58474,0.23277,215.97,0.41347,0.75316,0.51166,-203.4,-0.4745,-0.30137,0.82706,222.25
> view matrix models
> #500,0.79883,-0.57251,0.18465,225.1,0.37252,0.71182,0.59543,-210.19,-0.47233,-0.40686,0.7819,283.93
> select subtract #500
Nothing selected
> view orient
> turn x 90
[Repeated 2 time(s)]
> turn y 10
[Repeated 6 time(s)]
> select add #500
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> select subtract #500
Nothing selected
> select add #500
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #500,0.79883,-0.57251,0.18465,225.1,0.37252,0.71182,0.59543,-210.19,-0.47233,-0.40686,0.7819,285.48
> ui mousemode right "rotate selected models"
> view matrix models
> #500,0.80424,-0.5677,0.17582,225.42,0.35767,0.69862,0.61969,-211.09,-0.47463,-0.43549,0.7649,304.52
> select subtract #500
Nothing selected
> sym #500 C18 copies true center #479
Made 18 copies for PilM-1.pdb symmetry C18
> color #417 #567ba9ff models
> hide #!501 models
> hide #!502 models
> hide #!417 models
> hide #!486 models
> hide #!488 models
> show #!482 models
> show #!423 models
> hide #!423 models
> show #!423 models
> hide #!423 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PflB-
> noloop_alfold_12102021.pdb
Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
PflB/Manuscript-Start2023/Start/Working-
Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PflB-
noloop_alfold_12102021.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS A 118 LEU A 120 1 3
Start residue of secondary structure not found: HELIX 2 2 ASN A 121 VAL A 125
1 5
Start residue of secondary structure not found: HELIX 3 3 ASP A 127 ILE A 137
1 11
Start residue of secondary structure not found: HELIX 4 4 LEU A 138 SER A 140
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 144 VAL A 147
1 4
91 messages similar to the above omitted
Chain information for PflB-noloop_alfold_12102021.pdb #503
---
Chain | Description
A | No description available
> select add #503
12588 atoms, 12726 bonds, 1 pseudobond, 774 residues, 2 models selected
> select subtract #503
Nothing selected
> ui mousemode right "translate selected models"
> select add #503
12588 atoms, 12726 bonds, 1 pseudobond, 774 residues, 2 models selected
> ui mousemode right zoom
> hide sel cartoons
[Repeated 1 time(s)]
> show sel cartoons
> close #503
> show #!497 models
> hide #!497 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PflB_alfold_12102021.pdb
Chain information for PflB_alfold_12102021.pdb #503
---
Chain | Description
A | No description available
> select add #503
13646 atoms, 13790 bonds, 844 residues, 1 model selected
> select subtract #503
Nothing selected
> ui mousemode right "translate selected models"
> select add #503
13646 atoms, 13790 bonds, 844 residues, 1 model selected
> view matrix models #503,1,0,0,402.76,0,1,0,296.19,0,0,1,-78.754
> view matrix models #503,1,0,0,514.12,0,1,0,485.56,0,0,1,581.96
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #503,-0.7639,-0.21037,-0.61008,520.95,-0.58914,-0.15851,0.79233,479.13,-0.26339,0.96469,-0.0028491,590.95
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #503,-0.7639,-0.21037,-0.61008,465.82,-0.58914,-0.15851,0.79233,392.18,-0.26339,0.96469,-0.0028491,580.46
> ui mousemode right "rotate selected models"
> view matrix models
> #503,-0.91189,-0.20384,-0.35623,466.3,-0.34598,-0.085129,0.93437,391.51,-0.22078,0.9753,0.0071054,580.34
> ui mousemode right "translate selected models"
> view matrix models
> #503,-0.91189,-0.20384,-0.35623,463.29,-0.34598,-0.085129,0.93437,393.83,-0.22078,0.9753,0.0071054,580.82
> ui mousemode right "rotate selected models"
> view matrix models
> #503,-0.89237,-0.20644,-0.40133,463.23,-0.38943,-0.0972,0.91591,393.95,-0.22809,0.97362,0.006343,580.84
> view matrix models
> #503,-0.88363,-0.25117,-0.3951,462.86,-0.38942,-0.074136,0.91807,394.12,-0.25988,0.9651,-0.032302,580.95
> view matrix models
> #503,-0.91099,-0.064316,-0.40739,464.34,-0.41175,0.19885,0.88934,396.21,0.023811,0.97792,-0.20763,579.94
> ui mousemode right "translate selected models"
> view matrix models
> #503,-0.91099,-0.064316,-0.40739,460.64,-0.41175,0.19885,0.88934,391.81,0.023811,0.97792,-0.20763,579.05
> view matrix models
> #503,-0.91099,-0.064316,-0.40739,457.34,-0.41175,0.19885,0.88934,389.93,0.023811,0.97792,-0.20763,509.99
> view matrix models
> #503,-0.91099,-0.064316,-0.40739,448.01,-0.41175,0.19885,0.88934,397.3,0.023811,0.97792,-0.20763,511.28
> ui mousemode right "rotate selected models"
> view matrix models
> #503,-0.85632,-0.10925,-0.50475,447.53,-0.51642,0.1899,0.83501,397.75,0.004627,0.97571,-0.21904,511.36
> ui mousemode right "translate selected models"
> view matrix models
> #503,-0.85632,-0.10925,-0.50475,452.28,-0.51642,0.1899,0.83501,399.2,0.004627,0.97571,-0.21904,511.69
> ui mousemode right "rotate selected models"
> view matrix models
> #503,-0.82339,-0.39894,-0.40359,449.96,-0.40844,-0.077124,0.90952,396.74,-0.39397,0.91373,-0.099439,512.9
> color #482 #ffb2ff68 models
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #503,-0.80582,-0.45025,-0.38463,449.5,-0.35322,-0.15585,0.92247,395.91,-0.47528,0.8792,-0.033448,512.95
> view matrix models
> #503,-0.77681,-0.45003,-0.4405,449.42,-0.40253,-0.18309,0.89691,395.96,-0.48428,0.87405,-0.038928,512.96
> view matrix models
> #503,-0.77983,-0.34794,-0.52038,450.24,-0.56265,0.025211,0.82631,398.23,-0.27439,0.93718,-0.21543,512.64
> view matrix models
> #503,-0.77753,-0.3546,-0.51933,450.18,-0.55696,0.0048826,0.83053,398.05,-0.29197,0.93501,-0.20129,512.69
> view matrix models
> #503,-0.77945,-0.35462,-0.51643,450.19,-0.55423,0.006046,0.83234,398.05,-0.29204,0.93499,-0.20125,512.69
> view matrix models
> #503,-0.79801,0.43194,-0.42024,455.85,-0.56283,-0.28496,0.7759,396.04,0.21539,0.8557,0.47051,509.28
> view matrix models
> #503,-0.67952,0.47896,-0.55575,455.78,-0.70001,-0.19649,0.68657,397.36,0.21964,0.85556,0.46879,509.26
> view matrix models
> #503,-0.54328,-0.80459,-0.23976,445.66,-0.66298,0.23594,0.71049,400.29,-0.51508,0.54495,-0.66161,511.28
> view matrix models
> #503,-0.50527,-0.84115,-0.19279,445.19,-0.66949,0.24113,0.70259,400.37,-0.5445,0.48407,-0.68498,510.99
> view matrix models
> #503,-0.58871,-0.80257,-0.096464,445.75,-0.59497,0.34943,0.72381,400.8,-0.54721,0.48351,-0.68322,511
> ui mousemode right "translate selected models"
> view matrix models
> #503,-0.58871,-0.80257,-0.096464,454.83,-0.59497,0.34943,0.72381,393.74,-0.54721,0.48351,-0.68322,511.28
> ui mousemode right "rotate selected models"
> view matrix models
> #503,-0.60413,-0.79316,-0.076946,454.94,-0.5788,0.37038,0.7265,393.82,-0.54774,0.48344,-0.68284,511.28
> view matrix models
> #503,-0.62687,-0.77202,-0.10497,455.22,-0.56751,0.36013,0.74043,393.68,-0.53383,0.52372,-0.66388,511.49
> view matrix models
> #503,-0.63132,-0.76761,-0.11051,455.28,-0.56454,0.35718,0.74412,393.65,-0.53172,0.53217,-0.65884,511.54
> view matrix models
> #503,-0.6449,-0.75365,-0.12695,455.45,-0.58136,0.37591,0.72161,393.87,-0.49612,0.53916,-0.68057,511.45
> select
> #499/A:2-8,11-20,23-33,62-66,72-75,89-93,98-103,121-123,142-147,151-157,162-169,261-266,285-290
1460 atoms, 1466 bonds, 84 residues, 1 model selected
> select #499/A:1-2
40 atoms, 40 bonds, 2 residues, 1 model selected
> select #499/A:1-24
413 atoms, 416 bonds, 24 residues, 1 model selected
> select add #499
5017 atoms, 5064 bonds, 303 residues, 1 model selected
> select subtract #499
Nothing selected
> select add #503
13646 atoms, 13790 bonds, 844 residues, 1 model selected
Alignment identifier is 503/A
> ui mousemode right "translate selected models"
> view matrix models
> #503,-0.6449,-0.75365,-0.12695,455.22,-0.58136,0.37591,0.72161,392.06,-0.49612,0.53916,-0.68057,499.13
> view matrix models
> #503,-0.6449,-0.75365,-0.12695,450.52,-0.58136,0.37591,0.72161,389.56,-0.49612,0.53916,-0.68057,500.21
> view matrix models
> #503,-0.6449,-0.75365,-0.12695,451.07,-0.58136,0.37591,0.72161,391.16,-0.49612,0.53916,-0.68057,497.55
> view matrix models
> #503,-0.6449,-0.75365,-0.12695,451.25,-0.58136,0.37591,0.72161,392.39,-0.49612,0.53916,-0.68057,497.85
> select #503/A:1-2
38 atoms, 37 bonds, 2 residues, 1 model selected
> select #503/A:1-40
634 atoms, 636 bonds, 40 residues, 1 model selected
> select #503/A:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #503/A:1-305
4863 atoms, 4903 bonds, 305 residues, 1 model selected
> select #503/A:213-214
31 atoms, 30 bonds, 2 residues, 1 model selected
> select #503/A:1-214
3349 atoms, 3365 bonds, 214 residues, 1 model selected
> select clear
[Repeated 1 time(s)]
> ui mousemode right zoom
> select #503/A:192
14 atoms, 13 bonds, 1 residue, 1 model selected
> select #503/A:192
14 atoms, 13 bonds, 1 residue, 1 model selected
> select #503/A:193-195
36 atoms, 35 bonds, 3 residues, 1 model selected
> select #503/A:193-195
36 atoms, 35 bonds, 3 residues, 1 model selected
> select #503/A:195-200
93 atoms, 93 bonds, 6 residues, 1 model selected
> select #503/A:195-200
93 atoms, 93 bonds, 6 residues, 1 model selected
> select #503/A:200-201
22 atoms, 21 bonds, 2 residues, 1 model selected
> select #503/A:200-201
22 atoms, 21 bonds, 2 residues, 1 model selected
> select #503/A:189-191
54 atoms, 54 bonds, 3 residues, 1 model selected
> select #503/A:189-191
54 atoms, 54 bonds, 3 residues, 1 model selected
> select #503/A:178-179
28 atoms, 28 bonds, 2 residues, 1 model selected
> select #503/A:178-180
42 atoms, 42 bonds, 3 residues, 1 model selected
> select #503/A:177-179
38 atoms, 38 bonds, 3 residues, 1 model selected
> select #503/A:177-179
38 atoms, 38 bonds, 3 residues, 1 model selected
> select #503/A:168-171
53 atoms, 52 bonds, 4 residues, 1 model selected
> select #503/A:168-171
53 atoms, 52 bonds, 4 residues, 1 model selected
> select #503/A:170-171
21 atoms, 20 bonds, 2 residues, 1 model selected
> select #503/A:170-171
21 atoms, 20 bonds, 2 residues, 1 model selected
> select #503/A:155
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #503/A:152-155
74 atoms, 74 bonds, 4 residues, 1 model selected
> select #503/A:139
12 atoms, 11 bonds, 1 residue, 1 model selected
> select #503/A:137-139
47 atoms, 46 bonds, 3 residues, 1 model selected
> select
> #503/A:34-57,59-83,140-155,159-170,174-187,191-204,208-222,225-242,248-258,264-270,278-291,295-304,310-320,324-337,342-355,358-368,372-380,390-392,397-406,412-422,431-444,452-480,484-497,502-514,518-531,536-548,554-566,572-585,594-596,604-616,620-633,638-649,656-665,671-676,679-692,695-708,716-728,732-745,751-763,767-780,785-798,801-808,827-837
9294 atoms, 9350 bonds, 560 residues, 1 model selected
> select #503/A:140-141
29 atoms, 28 bonds, 2 residues, 1 model selected
> select #503/A:140-141
29 atoms, 28 bonds, 2 residues, 1 model selected
> select #503/A:140
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #503/A:1-140
2232 atoms, 2240 bonds, 140 residues, 1 model selected
> select
> #503/A:34-57,59-83,140-155,159-170,174-187,191-204,208-222,225-242,248-258,264-270,278-291,295-304,310-320,324-337,342-355,358-368,372-380,390-392,397-406,412-422,431-444,452-480,484-497,502-514,518-531,536-548,554-566,572-585,594-596,604-616,620-633,638-649,656-665,671-676,679-692,695-708,716-728,732-745,751-763,767-780,785-798,801-808,827-837
9294 atoms, 9350 bonds, 560 residues, 1 model selected
> select #503/A:2-139
2198 atoms, 2206 bonds, 138 residues, 1 model selected
> select #503/A:1-139
2217 atoms, 2225 bonds, 139 residues, 1 model selected
> select #503/A:140
15 atoms, 14 bonds, 1 residue, 1 model selected
> select #503/A:140-844
11429 atoms, 11564 bonds, 705 residues, 1 model selected
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PflB_dloop.pdb"
> selectedOnly true
> select add #503
13646 atoms, 13790 bonds, 844 residues, 1 model selected
> hide #503 models
> select subtract #503
Nothing selected
> close #503
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PflB_dloop.pdb
Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
PflB/Manuscript-Start2023/Start/Working-
Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PflB_dloop.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93
0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
2 messages similar to the above omitted
Chain information for PflB_dloop.pdb #503
---
Chain | Description
A | No description available
> select add #503
11429 atoms, 11564 bonds, 705 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #503,1,0,0,-2.2795,0,1,0,1.3968,0,0,1,-0.28657
> view matrix models #503,1,0,0,-0.68248,0,1,0,3.7128,0,0,1,0.22563
> select subtract #503
Nothing selected
> view orient
> sym #503 C13 copies true center #479
Made 13 copies for PflB_dloop.pdb symmetry C13
> color #482 #ffb2ffff models
> hide #!504 models
> show #!424 models
> show #!425 models
> show #!426 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/PDB_Files_Models/PflA_afold_11232021.pdb
Chain information for PflA_afold_11232021.pdb #505
---
Chain | Description
A | No description available
> ui mousemode right zoom
> select add #505
12939 atoms, 13062 bonds, 791 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #505,1,0,0,221.11,0,1,0,423.78,0,0,1,0
> view matrix models #505,1,0,0,288.87,0,1,0,502.68,0,0,1,3.3995
> view matrix models #505,1,0,0,244.24,0,1,0,391.93,0,0,1,480.96
Alignment identifier is 505/A
> select #505/A:1
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #505/A:1-20
303 atoms, 303 bonds, 20 residues, 1 model selected
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> select add #505
12939 atoms, 13062 bonds, 791 residues, 1 model selected
> select subtract #505
Nothing selected
> select add #505
12939 atoms, 13062 bonds, 791 residues, 1 model selected
> view matrix models
> #505,0.7769,0.12393,-0.61731,247.94,-0.62957,0.14028,-0.76417,384.06,-0.0081043,0.98233,0.187,495.9
> view matrix models
> #505,0.99461,0.10313,0.010648,245.16,-0.010249,0.2,-0.97974,390.18,-0.10317,0.97435,0.19998,495.1
> ui mousemode right "translate selected models"
> view matrix models
> #505,0.99461,0.10313,0.010648,300.5,-0.010249,0.2,-0.97974,444.49,-0.10317,0.97435,0.19998,489.86
> ui mousemode right "rotate selected models"
> view matrix models
> #505,0.95249,-0.014644,0.30423,297.17,0.30199,0.17548,-0.93702,446.06,-0.039663,0.98437,0.17156,490.57
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #505,0.87283,-0.48694,0.032573,293.67,0.16595,0.23338,-0.95812,445.86,0.45894,0.84168,0.28451,491.75
> view matrix models
> #505,0.99314,-0.025452,0.11412,298.55,0.088298,-0.47655,-0.8747,437.74,0.076647,0.87878,-0.47104,494.41
> view matrix models
> #505,0.95484,0.086109,0.28437,298.31,0.29317,-0.42855,-0.85463,439.46,0.048274,0.89941,-0.43444,494.19
> view matrix models
> #505,0.96085,0.07491,0.26676,298.35,0.27222,-0.43469,-0.85845,439.28,0.051648,0.89746,-0.43806,494.22
> hide #!426 models
> hide #!425 models
> fitmap #505 inMap #424
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA.mrc (#424) using 12939
atoms
average map value = 0.05424, steps = 188
shifted from previous position = 14
rotated from previous position = 22.7 degrees
atoms outside contour = 6002, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA.mrc (#424)
coordinates:
Matrix rotation and translation
-0.94988304 0.13119566 0.28374250 269.08184050
0.29564028 0.08206621 0.95176775 352.09576970
0.10158214 0.98795382 -0.11674003 391.45048400
Axis 0.14587614 0.73433934 0.66292223
Axis point 100.50148839 0.00000000 28.83874194
Rotation angle (degrees) 172.87525129
Shift along axis 557.31162369
> fitmap #505 inMap #424
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA.mrc (#424) using 12939
atoms
average map value = 0.05425, steps = 60
shifted from previous position = 0.183
rotated from previous position = 0.788 degrees
atoms outside contour = 5990, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA.mrc (#424)
coordinates:
Matrix rotation and translation
-0.94881601 0.13777916 0.28419180 269.21887572
0.29554095 0.07001964 0.95276057 352.17947047
0.11137155 0.98798485 -0.10715515 391.54320799
Axis 0.14885459 0.73032251 0.66668684
Axis point 99.50407821 0.00000000 27.46079498
Rotation angle (degrees) 173.20497400
Shift along axis 558.31576491
> fitmap #505 inMap #424
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA.mrc (#424) using 12939
atoms
average map value = 0.05425, steps = 48
shifted from previous position = 0.0558
rotated from previous position = 0.278 degrees
atoms outside contour = 5991, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA.mrc (#424)
coordinates:
Matrix rotation and translation
-0.94845995 0.13994578 0.28432164 269.26539287
0.29540933 0.06569981 0.95310900 352.19861489
0.11470371 0.98797704 -0.10365494 391.57318193
Axis 0.14983336 0.72887444 0.66805091
Axis point 99.16794006 0.00000000 26.95160206
Rotation angle (degrees) 173.31815291
Shift along axis 558.64432570
> fitmap #505 inMap #424
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA.mrc (#424) using 12939
atoms
average map value = 0.05425, steps = 104
shifted from previous position = 0.0836
rotated from previous position = 0.193 degrees
atoms outside contour = 5985, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA.mrc (#424)
coordinates:
Matrix rotation and translation
-0.94820342 0.14057326 0.28486722 269.26907748
0.29563661 0.06239409 0.95326065 352.24489738
0.11622893 0.98810225 -0.10072090 391.52731172
Axis 0.15035615 0.72774518 0.66916365
Axis point 98.94879582 0.00000000 26.42046988
Rotation angle (degrees) 173.34656381
Shift along axis 558.82662996
> color #424 #f9ff2656 models
> view matrix models
> #505,0.9871,-0.081389,0.13789,306.75,0.12901,-0.10573,-0.98599,432.91,0.094827,0.99106,-0.093862,502.17
> ui mousemode right "translate selected models"
> view matrix models
> #505,0.9871,-0.081389,0.13789,302.25,0.12901,-0.10573,-0.98599,432.25,0.094827,0.99106,-0.093862,501.35
> show #!442 models
> hide #!442 models
> ui mousemode right zoom
> show #!446 models
> hide #!446 models
> show #!446 models
> hide #!446 models
> show #!457 models
> show #!458 models
> hide #!458 models
> show #!456 models
> color #456 #567ba94b models
> ui mousemode right "rotate selected models"
> view matrix models
> #505,0.95211,-0.27621,0.13114,300.12,0.14673,0.036493,-0.9885,433.8,0.26825,0.9604,0.075275,501.12
> show #!365 models
> hide #!365 models
> show #!369 models
> hide #!369 models
> show #!369 models
> hide #!369 models
> show #!373 models
> show #!372 models
> fitmap #505 inMap #424
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA.mrc (#424) using 12939
atoms
average map value = 0.05425, steps = 244
shifted from previous position = 6.1
rotated from previous position = 12.9 degrees
atoms outside contour = 5976, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA.mrc (#424)
coordinates:
Matrix rotation and translation
-0.94649622 0.15054670 0.28544789 269.48059467
0.29492902 0.04446285 0.95448406 352.32921982
0.13100261 0.98760248 -0.08648451 391.72396730
Axis 0.15475823 0.72170356 0.67468057
Axis point 97.47452758 0.00000000 24.38140164
Rotation angle (degrees) 173.85756363
Shift along axis 560.27013851
> fitmap #505 inMap #424
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA.mrc (#424) using 12939
atoms
average map value = 0.05425, steps = 40
shifted from previous position = 0.0908
rotated from previous position = 0.396 degrees
atoms outside contour = 5983, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA.mrc (#424)
coordinates:
Matrix rotation and translation
-0.94709255 0.14716376 0.28523400 269.38913396
0.29518693 0.05045975 0.95410607 352.32389222
0.12601701 0.98782415 -0.09123088 391.66591098
Axis 0.15326747 0.72372992 0.67284774
Axis point 97.95969107 0.00000000 25.05915052
Rotation angle (degrees) 173.68482708
Shift along axis 559.80745670
> fitmap #505 inMap #424
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA.mrc (#424) using 12939
atoms
average map value = 0.05425, steps = 60
shifted from previous position = 0.144
rotated from previous position = 0.518 degrees
atoms outside contour = 5985, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA.mrc (#424)
coordinates:
Matrix rotation and translation
-0.94799608 0.14312254 0.28428730 269.34284355
0.29485072 0.05854296 0.95374822 352.22606688
0.11985986 0.98797195 -0.09769829 391.60345871
Axis 0.15120598 0.72646718 0.67035975
Axis point 98.67148594 0.00000000 26.07023168
Rotation angle (degrees) 173.50196027
Shift along axis 559.12212173
> hide #!482 models
> show #!504 models
> ui mousemode right "translate selected models"
> view matrix models
> #505,0.99002,-0.097935,0.10135,298.32,0.090671,-0.10798,-0.99001,436.66,0.1079,0.98932,-0.098023,500.82
> ui mousemode right "rotate selected models"
> view matrix models
> #505,0.98736,-0.087054,0.13241,298.21,0.12252,-0.11052,-0.98629,436.83,0.1005,0.99005,-0.09846,500.78
> view matrix models
> #505,0.9838,-0.076525,0.16211,298.11,0.15302,-0.11263,-0.98178,436.98,0.093391,0.99069,-0.099099,500.75
> ui mousemode right "translate selected models"
> view matrix models
> #505,0.9838,-0.076525,0.16211,298.11,0.15302,-0.11263,-0.98178,433.99,0.093391,0.99069,-0.099099,501.44
> select subtract #505
Nothing selected
> color #505 #f9ff26ff
> ui mousemode right zoom
> view orient
> sym #505 C18 copies true center #479
Made 18 copies for PflA_afold_11232021.pdb symmetry C18
> color #479 #5da36dff models
> color #456 #567ba9ff models
> hide #!456 models
> hide #!457 models
> hide #!372 models
> hide #!373 models
> color #424 #f9ff26ff models
> hide #!424 models
> hide #!479 models
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/07-updated-
> Using_PilNO_maps.cxs" includeMaps true
> show #!486 models
> show #!488 models
> show #!492 models
> show #!493 models
> show #!494 models
> show #!497 models
> show #!498 models
> show #500 models
> hide #500 models
> show #!501 models
> show #!502 models
> select add #486
49824 atoms, 50886 bonds, 6048 residues, 19 models selected
> select add #488
99648 atoms, 101772 bonds, 12096 residues, 38 models selected
> select add #492
275508 atoms, 280782 bonds, 35046 residues, 57 models selected
> select add #493
349290 atoms, 355860 bonds, 36 pseudobonds, 44370 residues, 94 models selected
> select add #494
479052 atoms, 487278 bonds, 36 pseudobonds, 60930 residues, 113 models
selected
> select add #497
525267 atoms, 533961 bonds, 114 pseudobonds, 66780 residues, 192 models
selected
> select add #498
539831 atoms, 548723 bonds, 136 pseudobonds, 68826 residues, 194 models
selected
> select add #501
630137 atoms, 639875 bonds, 136 pseudobonds, 74280 residues, 213 models
selected
> select add #502
720443 atoms, 731027 bonds, 136 pseudobonds, 79734 residues, 232 models
selected
> select add #504
869020 atoms, 881359 bonds, 136 pseudobonds, 88899 residues, 246 models
selected
> select add #506
1101922 atoms, 1116475 bonds, 136 pseudobonds, 103137 residues, 265 models
selected
> hide sel cartoons
> show sel surfaces
> select subtract #486
1052098 atoms, 1065589 bonds, 136 pseudobonds, 97089 residues, 734 models
selected
> select subtract #488
1002274 atoms, 1014703 bonds, 136 pseudobonds, 91041 residues, 679 models
selected
> select subtract #492
826414 atoms, 835693 bonds, 136 pseudobonds, 68091 residues, 624 models
selected
> select subtract #493
752632 atoms, 760615 bonds, 100 pseudobonds, 58767 residues, 587 models
selected
> select clear
> color #486 #567ba9ff models
> color #488 #567ba9ff models
> color #492 #e5b97fff models
> color #492 #ffd70bff models
> color #492 #e5b97fff models
> color #493 #e5b97fff models
> color #493 #e5ba80ff models
> color #493 #c6a16fff models
> color #493 #c8a270ff models
> color #492 #c8a270ff models
> color #494 #5d8ea1ff models
> color #494 #567ba9ff models
> color #497 #5da36dff models
> color #498 #5da36dff
> color #498 #5d8ea1ff
> color #498 #5da36dff
> color #501 #567ba9ff models
> color #501 #5d8ea1ff models
> color #501 #567ba9ff models
> color #502 #567ba9ff models
> color #504 #ff9affff models
> color #504 #ff73fcff models
> color #506 #f9ff26ff models
> color #506 #f4ff00ff models
> color #506 #f6ff00ff models
> turn x 90
> show #!10 models
> turn x 90
[Repeated 1 time(s)]
> show #!16 models
> show #!19 models
> show #!113 models
> show #!115 models
> show #!177-216 models
> show #!239-259 models
> show #!312 models
> show #!313 models
> show #!316 models
> show #!442-459 models
> show #!481 models
> view Side1
> save /Users/shoichi/Desktop/Side-model1.png supersample 2
> transparentBackground true
> save /Users/shoichi/Desktop/Side-model2.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/08-updated-
> Using_PilNO_maps.cxs" includeMaps true
> turn x 90
> save /Users/shoichi/Desktop/Top-model1.png supersample 2
> transparentBackground true
> save /Users/shoichi/Desktop/Top-model2.png supersample 2
> transparentBackground true
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/08-updated-
> Using_PilNO_maps.cxs" includeMaps true
——— End of log from Tue Aug 15 12:36:41 2023 ———
opened ChimeraX session
> hide #!10 models
> hide #!1-506 models
> show #!482 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/Mask-applied/Used-
> Chimera/PflB_C13.mrc
Opened PflB_C13.mrc as #507, grid size 256,256,256, pixel 2.1, shown at level
0.0015, step 1, values float32
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/Mask-applied/Used-
> Chimera/PflB_monomer.mrc
Opened PflB_monomer.mrc as #508, grid size 256,256,256, pixel 2.1, shown at
level 0.00116, step 1, values float32
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Working-Figures/2023-July_Maps/High-
> resolution-Bin1/MAP-PflA-PflB/PflB13-2.1L_segment/Mask-applied/Used-
> Chimera/Unknown-ring.mrc
Opened Unknown-ring.mrc as #509, grid size 256,256,256, pixel 2.1, shown at
level 0.000608, step 1, values float32
> hide #!482 models
> ui tool show "Map Eraser"
> hide #!508 models
> hide #!509 models
> select add #510
1 model selected
> volume erase #507 center 271.29,280.6,529.04 radius 188.7
Opened PflB_C13.mrc copy as #511, grid size 256,256,256, pixel 2.1, shown at
step 1, values float32
> hide #510 models
> select subtract #510
Nothing selected
> close #510
> close #511
> show #!507 models
> vop gaussian #507 sd 3
Opened PflB_C13.mrc gaussian as #510, grid size 256,256,256, pixel 2.1, shown
at step 1, values float32
> vop gaussian #508 sd 3
Opened PflB_monomer.mrc gaussian as #511, grid size 256,256,256, pixel 2.1,
shown at step 1, values float32
> vop gaussian #509 sd 3
Opened Unknown-ring.mrc gaussian as #512, grid size 256,256,256, pixel 2.1,
shown at step 1, values float32
> hide #!512 models
> hide #!511 models
> volume erase #510 center 262.07,259.23,513.1 radius 188.7
> volume erase #510 center 278.35,292,96.46 radius 188.7
> hide #!510 models
> show #!511 models
> volume erase #511 center 279,292.83,105.31 radius 188.7
> volume erase #511 center 311.41,299.75,539.69 radius 188.7
> volume erase #511 center 214.23,208.03,533.76 radius 188.7
> volume erase #511 center 146.38,499,322.55 radius 188.7 outside true
> volume erase #511 center 254.56,322.22,353.4 radius 188.7 outside true
> volume erase #511 center 338.79,417.59,149.03 radius 188.7
> volume erase #511 center 327.97,584.09,400.34 radius 188.7
> volume erase #511 center -54.725,399.27,369.93 radius 188.7
> volume erase #511 center 124.74,266.6,153.85 radius 188.7
> volume erase #511 center 252.53,406.84,108.1 radius 188.7
> volume erase #511 center 168.29,463.1,269.89 radius 24.73
> volume erase #511 center 140.57,439.69,272.77 radius 24.73
> volume erase #511 center 116.06,414.63,284.21 radius 24.73
> volume erase #511 center 114.14,392.53,320.98 radius 24.73
> volume erase #511 center 122.56,463.26,316.14 radius 24.73
> volume erase #511 center 221.9,457.81,332.25 radius 24.73
> volume erase #511 center 219.19,449.29,318.89 radius 24.73
> volume erase #511 center 242.27,406.87,324.64 radius 24.73
> volume erase #511 center 234.02,399.26,293.97 radius 24.73
> volume erase #511 center 262.83,354.06,321.43 radius 24.73
> volume erase #511 center 191.24,320.85,316.06 radius 24.73
> hide #513 models
> show #!512 models
> hide #!511 models
> show #!511 models
> hide #!511 models
> show #!510 models
> hide #!510 models
> show #513 models
> volume erase #512 center 281.52,278.47,488.44 radius 134.67
> volume erase #512 center 232.44,240.06,508.02 radius 134.67
> volume erase #512 center 270.76,274.2,127.82 radius 134.67
> volume erase #512 center 274.08,203.43,152.33 radius 134.67
> volume erase #512 center 308.33,328.32,162.63 radius 134.67
> volume erase #512 center 215.45,306.84,159.04 radius 134.67
> volume erase #512 center 223.23,260.31,157.23 radius 134.67
> volume erase #512 center 185.02,195.13,156.88 radius 134.67
> volume erase #512 center 364.5,260.92,154.88 radius 134.67
> volume erase #512 center 350.75,225.29,160.2 radius 134.67
> show #!510 models
> show #!479 models
> hide #!479 models
> show #!482 models
> show #!511 models
> select add #510
2 models selected
> select add #511
4 models selected
> select add #512
6 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #510,1,0,0,289.08,0,1,0,224.74,0,0,1,-53.848,#511,1,0,0,289.08,0,1,0,224.74,0,0,1,-53.848,#512,1,0,0,289.08,0,1,0,224.74,0,0,1,-53.848
> view matrix models
> #510,1,0,0,300.55,0,1,0,363.26,0,0,1,104.73,#511,1,0,0,300.55,0,1,0,363.26,0,0,1,104.73,#512,1,0,0,300.55,0,1,0,363.26,0,0,1,104.73
> view matrix models
> #510,1,0,0,263.25,0,1,0,259.67,0,0,1,115.13,#511,1,0,0,263.25,0,1,0,259.67,0,0,1,115.13,#512,1,0,0,263.25,0,1,0,259.67,0,0,1,115.13
> view matrix models
> #510,1,0,0,261.02,0,1,0,260.21,0,0,1,181.55,#511,1,0,0,261.02,0,1,0,260.21,0,0,1,181.55,#512,1,0,0,261.02,0,1,0,260.21,0,0,1,181.55
> view matrix models
> #510,1,0,0,268.67,0,1,0,266.35,0,0,1,182.19,#511,1,0,0,268.67,0,1,0,266.35,0,0,1,182.19,#512,1,0,0,268.67,0,1,0,266.35,0,0,1,182.19
> ui mousemode right "rotate selected models"
> view matrix models
> #510,0.99809,-0.061767,-0.0023396,286.61,0.061774,0.99808,0.0032272,249.24,0.0021358,-0.0033655,0.99999,182.52,#511,0.99809,-0.061767,-0.0023396,286.61,0.061774,0.99808,0.0032272,249.24,0.0021358,-0.0033655,0.99999,182.52,#512,0.99809,-0.061767,-0.0023396,286.61,0.061774,0.99808,0.0032272,249.24,0.0021358,-0.0033655,0.99999,182.52
> select subtract #510
4 models selected
> select subtract #511
2 models selected
> select subtract #512
Nothing selected
> ui tool show "Fit in Map"
> fitmap #510 inMap #482
Fit map PflB_C13.mrc gaussian in map PflBC13.mrc using 159354 points
correlation = 0.8712, correlation about mean = 0.6977, overlap = 43.5
steps = 72, shift = 1.94, angle = 2.88 degrees
Position of PflB_C13.mrc gaussian (#510) relative to PflBC13.mrc (#482)
coordinates:
Matrix rotation and translation
0.99999964 0.00080309 -0.00027549 -0.16701306
-0.00080300 0.99999963 0.00032114 0.12154116
0.00027575 -0.00032091 0.99999991 -0.34901670
Axis -0.35367047 -0.30364817 -0.88471181
Axis point 276.47112597 62.34477237 0.00000000
Rotation angle (degrees) 0.05200710
Shift along axis 0.33094104
> fitmap #511 inMap #482
Fit map PflB_monomer.mrc gaussian in map PflBC13.mrc using 13201 points
correlation = 0.8225, correlation about mean = 0.6167, overlap = 3.279
steps = 100, shift = 7.87, angle = 6.15 degrees
Position of PflB_monomer.mrc gaussian (#511) relative to PflBC13.mrc (#482)
coordinates:
Matrix rotation and translation
0.99794436 -0.00600267 0.06380458 -16.98418885
0.00175521 0.99779030 0.06641859 -20.18665032
-0.06406228 -0.06617007 0.99574974 39.44199768
Axis -0.71917006 0.69355877 0.04207928
Axis point 0.00000000 575.48331298 321.75654853
Rotation angle (degrees) 5.28913186
Shift along axis -0.12641729
> fitmap #512 inMap #482
Fit map Unknown-ring.mrc gaussian in map PflBC13.mrc using 43070 points
correlation = 0.8641, correlation about mean = 0.6151, overlap = 6.476
steps = 68, shift = 1.84, angle = 3.03 degrees
Position of Unknown-ring.mrc gaussian (#512) relative to PflBC13.mrc (#482)
coordinates:
Matrix rotation and translation
0.99999828 -0.00182946 0.00030836 0.40157049
0.00182952 0.99999830 -0.00021605 -0.41518728
-0.00030796 0.00021662 0.99999993 -0.32184179
Axis 0.11582105 0.16498308 0.97947234
Axis point 196.75041454 240.66680771 0.00000000
Rotation angle (degrees) 0.10701896
Shift along axis -0.33722369
> fitmap #512 inMap #482
Fit map Unknown-ring.mrc gaussian in map PflBC13.mrc using 43070 points
correlation = 0.864, correlation about mean = 0.6149, overlap = 6.478
steps = 48, shift = 0.0403, angle = 0.0265 degrees
Position of Unknown-ring.mrc gaussian (#512) relative to PflBC13.mrc (#482)
coordinates:
Matrix rotation and translation
0.99999824 -0.00187366 -0.00000884 0.51471403
0.00187366 0.99999824 0.00011661 -0.53388420
0.00000863 -0.00011663 0.99999999 -0.27712899
Axis -0.06212163 -0.00465260 0.99805774
Axis point 285.95026922 264.29431915 0.00000000
Rotation angle (degrees) 0.10756184
Shift along axis -0.30608166
> fitmap #512 inMap #482
Fit map Unknown-ring.mrc gaussian in map PflBC13.mrc using 43070 points
correlation = 0.864, correlation about mean = 0.615, overlap = 6.476
steps = 44, shift = 0.0284, angle = 0.0307 degrees
Position of Unknown-ring.mrc gaussian (#512) relative to PflBC13.mrc (#482)
coordinates:
Matrix rotation and translation
0.99999828 -0.00180591 0.00041608 0.36073540
0.00180600 0.99999835 -0.00020223 -0.41373403
-0.00041572 0.00020298 0.99999989 -0.27730742
Axis 0.10867958 0.22309041 0.96872051
Axis point 189.54671797 218.93369081 0.00000000
Rotation angle (degrees) 0.10681480
Shift along axis -0.32172891
> color #511 #ffb2ffff models
> color #512 #f681faff models
> color #512 #b491faff models
> color #512 #cbb7faff models
> hide #!482 models
> show #!479 models
> hide #!512 models
> show #!512 models
> hide #!512 models
> hide #!511 models
> view orient
> turn x 90
[Repeated 6 time(s)]
> ui tool show "Side View"
> show #!512 models
> volume #510 level 0.001078
> volume #512 level 0.0004414
> volume #512 level 0.001186
> volume #479 level 0.01151
> hide #!512 models
> turn x 90
[Repeated 4 time(s)]
> show #!512 models
> volume #512 level 0.001086
> turn x 90
[Repeated 2 time(s)]
> show #!10 models
> ui mousemode right zoom
> show #!16 models
> hide #!16 models
> show #!19 models
> vop gaussian #10 sd 3
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at step 1, values float32
> close #513
> vop gaussian #10 sd 4
Opened 0838-disk.mrc gaussian as #513, grid size 240,240,240, pixel 4.3, shown
at step 1, values float32
> vop gaussian #19 sd 4
Opened 0838-top.mrc gaussian as #514, grid size 240,240,240, pixel 4.3, shown
at step 1, values float32
> hide #!510 models
> hide #!479 models
> hide #!512 models
> hide #!514 models
> hide #!513 models
> show #!514 models
> ui tool show "Map Eraser"
> volume erase #514 center 541.28,535.39,794.08 radius 172.94 outside true
> volume erase #514 center 553.68,525.18,1003.3 radius 172.94
> close #515
> show #!16 models
> show #!26 models
> ui mousemode right zoom
[Repeated 1 time(s)]
> ui tool show "Side View"
> color #513 #567ba9ff models
> color #514 #567ba9ff models
> show #!32-36 models
> show #!42-47 models
> show #!54-59 models
> show #!113 models
> show #!115 models
> show #!177-216 models
> show #!239-259 models
> show #!281-298 models
> show #!312-313 models
> show #!316 models
> show #!356-373 models
> show #!377-391 models
> show #!415-418 models
> show #!424-477 models
> show #!479 models
> show #!481 models
> show #!484 models
> show #!510-514 models
> view Side1
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/10-updated-
> Using_PilNO_maps.cxs" includeMaps true
> close #2,11#1,3-10,12-15
> close #25#17-24
> close #27-31
> close #37-41
> close #48-53
> close
> #63,68,70,72,74,94,99,102-105,107,110#60-62,64-67,69,71,73,75-93,95-98,100-101,106,108-109,111-112
> close #114
> close #116-176
> close #217-238
> close #260-280
> show #301 models
> hide #301 models
> close #300-303#299,304-311
> close #314-315
> close #317-355
> close #374-376
> close #392#393-414
> close #419-420#421-423
> close #478
> close #480
> save "/Users/shoichi/OneDrive - Yale University/Jun_Lab_documents/Project-
> documents/H.pylori-univ-G/PflA-PflB/Manuscript-Start2023/Start/Working-
> Figures/2023-July_Maps/Using_PilNO_Surface_rendering/Cleaned-10-updated-
> Using_PilNO_maps.cxs" includeMaps true
——— End of log from Fri Aug 18 13:15:10 2023 ———
opened ChimeraX session
> hide #!369 models
> show #!369 models
> hide #!369 models
> hide #!370 models
> hide #!371 models
> hide #!372 models
> hide #!373 models
> hide #!377 models
> hide #!378 models
> show #!378 models
> hide #!378 models
> hide #!356 models
> hide #!418 models
> show #!418 models
> hide #!417 models
> hide #!418 models
> hide #!416 models
> hide #!415 models
> hide #!391 models
> hide #!298 models
> show #!298 models
> hide #!206 models
> hide #!207 models
> hide #!205 models
> hide #!208 models
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> hide #!203 models
> hide #!202 models
> hide #!201 models
> hide #!200 models
> hide #!26-59 models
> hide #!281-298 models
> hide #!424-441 models
> hide #!456 models
> hide #!455 models
> hide #!454 models
> hide #!453 models
> hide #!457 models
> hide #!458 models
> hide #!460-477 models
> hide #!511 models
> hide #!510 models
> hide #!479 models
> show #!494 models
> hide #!494.7 models
> show #!494.7 models
> hide #!494.1 models
> hide #!494.2 models
> hide #!494.18 models
> hide #!494.17 models
> hide #!494.16 models
> hide #!494.15 models
> show #!497 models
> show #!492 models
> hide #!492.14 models
> show #!492.14 models
> hide #!492.1 models
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> hide #!492.18 models
> hide #!492.17 models
> hide #!492.16 models
> hide #!492.15 models
> show #!490 models
> hide #!490 models
> show #!493 models
> hide #!493 models
> show #!493 models
> hide #!493.1 models
> hide #!493.2 models
> hide #!493.18 models
> hide #!493.17 models
> hide #!493.16 models
> hide #!493.15 models
> hide #!452 models
> hide #!368 models
> show #!507 models
> hide #!507 models
> show #!504 models
> hide #!504.9 models
> show #!504.9 models
> hide #!504.1 models
> hide #!504.2 models
> show #!504.2 models
> hide #!504.13 models
> hide #!504.12 models
> hide #!504.11 models
> hide #!504.10 models
> show #!504.10 models
> show #!506 models
> show #505 models
> hide #!506 models
> view name Model1
> turn x 90
> hide #!504 models
> hide #!492 models
> hide #!493 models
> hide #!494 models
> show #!438 models
> hide #!438 models
> show #!439 models
> show #!440 models
> show #!441 models
> show #!438 models
> hide #!438 models
> show #!424 models
> hide #!497 models
> hide #!16-514 models
> show #505 models
> show #!436 models
> show #!437 models
> show #!438 models
> show #!439 models
> show #!440 models
> show #!441 models
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> show #!430 models
> show #!429 models
> show #!428 models
> show #!427 models
> show #!426 models
> show #!425 models
> show #!424 models
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/For-Poster-
> model_Sep_2023.cxs includeMaps true
——— End of log from Sun Sep 3 14:32:45 2023 ———
opened ChimeraX session
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/Using_previous-map-
> Cage-Top-withPflA/Cage-top-Model2.mrc
Opened Cage-top-Model2.mrc as #1, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at level 0.00712, step 1, values float32
> show #!356 models
> show #!357 models
> hide #!357 models
> hide #!356 models
> show #!442 models
> show #!443 models
> show #!444 models
> show #!445 models
> show #!446 models
> hide #!446 models
> show #!446 models
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> show #!452 models
> show #!453 models
> show #!454 models
> show #!455 models
> show #!456 models
> show #!457 models
> show #!458 models
> show #!459 models
> select add #1
2 models selected
> view matrix models #1,1,0,0,-189.09,0,1,0,-198.16,0,0,1,125.96
> view matrix models #1,1,0,0,-243.23,0,1,0,-128.54,0,0,1,101.56
> ui mousemode right "rotate selected models"
> view matrix models
> #1,-0.91858,0.12359,-0.37542,530.29,-0.26342,-0.89957,0.3484,461.27,-0.29466,0.41893,0.85888,119.44
> ui mousemode right "translate selected models"
> view matrix models
> #1,-0.91858,0.12359,-0.37542,673.15,-0.26342,-0.89957,0.3484,620.4,-0.29466,0.41893,0.85888,112.27
> hide #!457 models
> hide #!458 models
> hide #!459 models
> hide #!456 models
> hide #!455 models
> hide #!454 models
> show #!456 models
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #1,-0.9145,0.16071,-0.3713,657.32,-0.29084,-0.8991,0.32716,638.68,-0.28126,0.40717,0.86896,107.4
> view matrix models
> #1,-0.98211,0.036654,-0.18468,643.01,-0.066294,-0.98538,0.15697,664.21,-0.17623,0.16641,0.97018,110.49
> ui mousemode right "translate selected models"
> view matrix models
> #1,-0.98211,0.036654,-0.18468,481.77,-0.066294,-0.98538,0.15697,701.25,-0.17623,0.16641,0.97018,140.64
> view matrix models
> #1,-0.98211,0.036654,-0.18468,562.81,-0.066294,-0.98538,0.15697,707.81,-0.17623,0.16641,0.97018,112.02
> view matrix models
> #1,-0.98211,0.036654,-0.18468,567.71,-0.066294,-0.98538,0.15697,704.17,-0.17623,0.16641,0.97018,112.45
> view matrix models
> #1,-0.98211,0.036654,-0.18468,634.36,-0.066294,-0.98538,0.15697,732.8,-0.17623,0.16641,0.97018,145.23
> ui mousemode right "rotate selected models"
> view matrix models
> #1,-0.91391,0.36272,-0.18219,498.63,-0.39148,-0.90627,0.15945,815.78,-0.10728,0.21705,0.97025,104.36
> ui mousemode right "translate selected models"
> view matrix models
> #1,-0.91391,0.36272,-0.18219,504.49,-0.39148,-0.90627,0.15945,789.31,-0.10728,0.21705,0.97025,110.03
> view matrix models
> #1,-0.91391,0.36272,-0.18219,507.32,-0.39148,-0.90627,0.15945,794.43,-0.10728,0.21705,0.97025,74.097
> view matrix models
> #1,-0.91391,0.36272,-0.18219,510.25,-0.39148,-0.90627,0.15945,786.93,-0.10728,0.21705,0.97025,75.357
> ui tool show "Fit in Map"
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.973, overlap = 134.7
steps = 536, shift = 39.2, angle = 14.5 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999972 -0.00048548 -0.00048433 0.61245996
0.00048492 0.99999917 -0.00115253 0.30751263
0.00048488 0.00115229 0.99999916 -0.72947491
Axis 0.85935895 -0.36137296 0.36181734
Axis point 0.00000000 680.77258597 313.78152474
Rotation angle (degrees) 0.07683424
Shift along axis 0.15125953
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 40, shift = 0.0861, angle = 0.0276 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999969 -0.00040269 -0.00059660 0.63959677
0.00040227 0.99999963 -0.00069096 0.12060194
0.00059688 0.00069071 0.99999952 -0.57585226
Axis 0.69244833 -0.59813571 0.40342159
Axis point 0.00000000 914.74299403 293.96449136
Rotation angle (degrees) 0.05716210
Shift along axis 0.13844016
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.076, angle = 0.0251 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999968 -0.00038967 -0.00063188 0.64043440
0.00038951 0.99999984 -0.00025453 -0.08335596
0.00063198 0.00025428 0.99999971 -0.42269139
Axis 0.32418668 -0.80526107 0.49644497
Axis point 720.17439694 0.00000000 979.91982533
Rotation angle (degrees) 0.04496325
Shift along axis 0.06490059
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.00603, angle = 0.00251 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999970 -0.00037594 -0.00060896 0.62521028
0.00037581 0.99999986 -0.00021989 -0.09363222
0.00060904 0.00021965 0.99999973 -0.40050367
Axis 0.29355749 -0.81347703 0.50207481
Axis point 706.26250264 0.00000000 998.12845662
Rotation angle (degrees) 0.04289396
Shift along axis 0.05862002
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.00387, angle = 0.00123 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999970 -0.00037236 -0.00060903 0.62302829
0.00037224 0.99999986 -0.00019873 -0.10239395
0.00060910 0.00019850 0.99999973 -0.39207462
Axis 0.26805111 -0.82199662 0.50246409
Axis point 688.71519828 0.00000000 998.86137358
Rotation angle (degrees) 0.04245367
Shift along axis 0.05416749
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.00563, angle = 0.00166 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999970 -0.00036722 -0.00060892 0.61960814
0.00036711 0.99999987 -0.00017020 -0.11414955
0.00060898 0.00016997 0.99999974 -0.37982033
Axis 0.23263086 -0.83288322 0.50218367
Axis point 663.99777520 0.00000000 998.75902037
Rotation angle (degrees) 0.04189100
Shift along axis 0.04847365
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.011, angle = 0.00214 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00035768 -0.00059689 0.60468584
0.00035760 0.99999988 -0.00013621 -0.12864562
0.00059693 0.00013599 0.99999975 -0.36298819
Axis 0.19195176 -0.84186276 0.50440223
Axis point 643.28332013 0.00000000 999.53306777
Rotation angle (degrees) 0.04062466
Shift along axis 0.04128041
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.111, angle = 0.00888 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999965 -0.00038597 -0.00068038 0.65717678
0.00038579 0.99999984 -0.00026378 0.00705444
0.00068048 0.00026351 0.99999967 -0.46206852
Axis 0.31938828 -0.82429530 0.46747020
Axis point 671.22179773 0.00000000 971.19431373
Rotation angle (degrees) 0.04729583
Shift along axis -0.01192365
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.039, angle = 0.021 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999977 -0.00034021 -0.00050135 0.57441871
0.00033992 0.99999972 -0.00058011 0.15748916
0.00050155 0.00057993 0.99999964 -0.51482930
Axis 0.69152016 -0.59784500 0.40543955
Axis point 0.00000000 953.87636686 368.33341168
Rotation angle (degrees) 0.04805737
Shift along axis 0.09433586
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.0401, angle = 0.0155 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999978 -0.00035080 -0.00045918 0.54162835
0.00035041 0.99999953 -0.00084689 0.26559610
0.00045947 0.00084672 0.99999947 -0.60476392
Axis 0.82601111 -0.44804726 0.34199312
Axis point 0.00000000 763.54976589 377.55282230
Rotation angle (degrees) 0.05873794
Shift along axis 0.12156634
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 28, shift = 0.0604, angle = 0.00671 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999975 -0.00039806 -0.00048550 0.58755177
0.00039760 0.99999942 -0.00095069 0.22343165
0.00048588 0.00095049 0.99999937 -0.64904838
Axis 0.83443267 -0.42634284 0.34921900
Axis point 0.00000000 744.89282839 310.10418664
Rotation angle (degrees) 0.06527182
Shift along axis 0.16835388
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.0343, angle = 0.0157 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00042970 -0.00055279 0.62102718
0.00042932 0.99999962 -0.00068702 0.10123759
0.00055309 0.00068678 0.99999955 -0.56439167
Axis 0.70031520 -0.56374113 0.43789790
Axis point 0.00000000 905.27294141 254.17122311
Rotation angle (degrees) 0.05619805
Shift along axis 0.13069706
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.0062, angle = 0.0022 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999970 -0.00042790 -0.00055671 0.62537988
0.00042754 0.99999965 -0.00064879 0.08528876
0.00055699 0.00064854 0.99999957 -0.55334473
Axis 0.67857419 -0.58252417 0.44744011
Axis point 0.00000000 941.03288870 245.13714996
Rotation angle (degrees) 0.05477028
Shift along axis 0.12709526
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 24, shift = 0.0145, angle = 0.00138 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999970 -0.00042609 -0.00055975 0.62267988
0.00042574 0.99999966 -0.00062503 0.06453912
0.00056002 0.00062479 0.99999959 -0.54491802
Axis 0.66412698 -0.59502033 0.45264351
Axis point 0.00000000 965.37097909 225.13046274
Rotation angle (degrees) 0.05391238
Shift along axis 0.12848281
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 24, shift = 0.0123, angle = 0.00269 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00041615 -0.00055309 0.61016128
0.00041583 0.99999970 -0.00057960 0.04412869
0.00055333 0.00057936 0.99999962 -0.52639462
Axis 0.64193525 -0.61283203 0.46082104
Axis point 0.00000000 1005.77875806 204.76296937
Rotation angle (degrees) 0.05172121
Shift along axis 0.12206685
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.105, angle = 0.00452 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999972 -0.00041595 -0.00054703 0.59434179
0.00041558 0.99999965 -0.00065824 0.17106523
0.00054730 0.00065800 0.99999957 -0.56792536
Axis 0.69165971 -0.57504704 0.43695279
Axis point 0.00000000 906.14254370 315.86427657
Rotation angle (degrees) 0.05451753
Shift along axis 0.06455515
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 28, shift = 0.0473, angle = 0.0136 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999972 -0.00042214 -0.00053014 0.61138864
0.00042167 0.99999946 -0.00089479 0.19882348
0.00053052 0.00089456 0.99999940 -0.64542952
Axis 0.79713460 -0.47251381 0.37590841
Axis point -0.00000000 785.05237495 301.40240937
Rotation angle (degrees) 0.06430643
Shift along axis 0.15078982
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.973, overlap = 134.8
steps = 40, shift = 0.0478, angle = 0.00682 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999967 -0.00044555 -0.00059849 0.66402251
0.00044507 0.99999953 -0.00080022 0.19882585
0.00059885 0.00079995 0.99999944 -0.62071334
Axis 0.73133825 -0.54722932 0.40704354
Axis point 0.00000000 839.32451818 332.93422723
Rotation angle (degrees) 0.06268174
Shift along axis 0.12416436
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 40, shift = 0.0509, angle = 0.0051 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999969 -0.00042690 -0.00058185 0.64750130
0.00042648 0.99999960 -0.00071474 0.14531723
0.00058215 0.00071448 0.99999951 -0.62212865
Axis 0.70362902 -0.57305802 0.42013177
Axis point 0.00000000 936.14998875 291.81960979
Rotation angle (degrees) 0.05818997
Shift along axis 0.11094949
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 44, shift = 0.0387, angle = 0.00139 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999969 -0.00043481 -0.00057102 0.62413139
0.00043439 0.99999959 -0.00073493 0.11990528
0.00057134 0.00073467 0.99999950 -0.61257740
Axis 0.71537521 -0.55607491 0.42310637
Axis point 0.00000000 903.42343904 253.97572883
Rotation angle (degrees) 0.05885172
Shift along axis 0.12062641
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 24, shift = 0.0676, angle = 0.0191 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999968 -0.00041135 -0.00060361 0.63001677
0.00041111 0.99999978 -0.00040322 -0.02965928
0.00060377 0.00040296 0.99999967 -0.47174641
Axis 0.48315551 -0.72360155 0.49291130
Axis point 857.94684853 0.00000000 968.67086586
Rotation angle (degrees) 0.04780095
Shift along axis 0.09332844
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.108, angle = 0.00543 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999969 -0.00040717 -0.00060083 0.61799081
0.00040687 0.99999974 -0.00049788 0.10596131
0.00060103 0.00049763 0.99999963 -0.52758997
Axis 0.56557934 -0.68281305 0.46247848
Axis point 903.84252793 0.00000000 996.94707324
Rotation angle (degrees) 0.05042461
Shift along axis 0.03317206
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 28, shift = 0.056, angle = 0.0134 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999972 -0.00040456 -0.00055441 0.62234360
0.00040415 0.99999960 -0.00072643 0.12487451
0.00055470 0.00072619 0.99999952 -0.58932043
Axis 0.72683161 -0.55495711 0.40464603
Axis point 0.00000000 892.23540763 281.92713077
Rotation angle (degrees) 0.05725463
Shift along axis 0.14457283
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.0841, angle = 0.00402 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999973 -0.00041425 -0.00051754 0.58706490
0.00041384 0.99999956 -0.00078535 0.21854249
0.00051787 0.00078513 0.99999950 -0.60385844
Axis 0.76411742 -0.50377755 0.40290537
Axis point 0.00000000 818.15757797 338.92775929
Rotation angle (degrees) 0.05887956
Shift along axis 0.09519191
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 28, shift = 0.046, angle = 0.0105 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999973 -0.00042012 -0.00050750 0.60109307
0.00041963 0.99999939 -0.00096869 0.22941554
0.00050790 0.00096847 0.99999934 -0.66606086
Axis 0.82684838 -0.43340874 0.35843914
Axis point 0.00000000 746.72356466 307.47114609
Rotation angle (degrees) 0.06711671
Shift along axis 0.15883985
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.0315, angle = 0.0137 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00043324 -0.00054545 0.62013363
0.00043284 0.99999959 -0.00073256 0.12480301
0.00054577 0.00073232 0.99999952 -0.58193408
Axis 0.72462444 -0.53978788 0.42842557
Axis point 0.00000000 872.41972484 267.70254323
Rotation angle (degrees) 0.05791356
Shift along axis 0.13268139
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 24, shift = 0.00836, angle = 0.00115 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00043364 -0.00054686 0.62325796
0.00043325 0.99999960 -0.00071248 0.11053557
0.00054717 0.00071223 0.99999953 -0.57481240
Axis 0.71430323 -0.54851412 0.43462991
Axis point 0.00000000 889.41685953 258.43717867
Rotation angle (degrees) 0.05713961
Shift along axis 0.13473419
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 24, shift = 0.014, angle = 0.00137 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00043220 -0.00055003 0.62100636
0.00043182 0.99999962 -0.00068879 0.09010179
0.00055033 0.00068855 0.99999955 -0.56703453
Axis 0.70155734 -0.56047583 0.44009560
Axis point 0.00000000 910.33828856 240.73255573
Rotation angle (degrees) 0.05624332
Shift along axis 0.13562229
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 24, shift = 0.0165, angle = 0.00262 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999972 -0.00042070 -0.00053829 0.60108843
0.00042035 0.99999965 -0.00064610 0.07047077
0.00053856 0.00064586 0.99999958 -0.54963382
Axis 0.68704570 -0.57265206 0.44725588
Axis point 0.00000000 938.92757283 221.02140809
Rotation angle (degrees) 0.05387103
Shift along axis 0.12679303
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.0865, angle = 0.00259 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999970 -0.00041779 -0.00056585 0.60528236
0.00041745 0.99999968 -0.00061034 0.14661091
0.00056611 0.00061009 0.99999959 -0.55509962
Axis 0.65531038 -0.60780651 0.44848584
Axis point 0.00000000 953.09074004 298.12823591
Rotation angle (degrees) 0.05335284
Shift along axis 0.05858243
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 28, shift = 0.0437, angle = 0.014 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999972 -0.00041737 -0.00053408 0.61214546
0.00041692 0.99999950 -0.00085272 0.18114231
0.00053443 0.00085249 0.99999943 -0.63023606
Axis 0.78277602 -0.49049834 0.38297921
Axis point -0.00000000 806.37682725 297.68458626
Rotation angle (degrees) 0.06240720
Shift along axis 0.14895548
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9728, overlap = 134.8
steps = 28, shift = 0.078, angle = 0.00868 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999980 -0.00038063 -0.00038810 0.48528609
0.00038031 0.99999953 -0.00083641 0.22395003
0.00038842 0.00083625 0.99999951 -0.58161457
Axis 0.83844746 -0.38924614 0.38143583
Axis point 0.00000000 740.29835285 312.92589772
Rotation angle (degrees) 0.05715094
Shift along axis 0.09786657
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 48, shift = 0.0628, angle = 0.0153 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00040969 -0.00055773 0.60563609
0.00040934 0.99999967 -0.00063301 0.13784814
0.00055799 0.00063278 0.99999958 -0.59454940
Axis 0.67487494 -0.59485976 0.43667572
Axis point 0.00000000 986.04629296 280.38261179
Rotation angle (degrees) 0.05373179
Shift along axis 0.06710302
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 40, shift = 0.046, angle = 0.00208 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999972 -0.00041009 -0.00054613 0.59986093
0.00040972 0.99999964 -0.00066734 0.10892879
0.00054640 0.00066711 0.99999957 -0.57840827
Axis 0.69881894 -0.57213740 0.42931443
Axis point 0.00000000 937.03717204 255.86697806
Rotation angle (degrees) 0.05470516
Shift along axis 0.10855292
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.9
steps = 44, shift = 0.0651, angle = 0.00506 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999976 -0.00038792 -0.00047754 0.56931957
0.00038758 0.99999962 -0.00071826 0.17712264
0.00047782 0.00071807 0.99999957 -0.52277158
Axis 0.75942434 -0.50512717 0.41002587
Axis point 0.00000000 801.59168128 336.62440030
Rotation angle (degrees) 0.05418282
Shift along axis 0.12853581
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/Using_previous-map-
> Cage-Top-withPflA/PflA-model2.mrc
Opened PflA-model2.mrc as #2, grid size 160,160,200, pixel 4.3,4.3,4.3, shown
at level 0.00712, step 1, values float32
> select subtract #1
Nothing selected
> select add #2
2 models selected
> view matrix models #2,1,0,0,-233.15,0,1,0,-26.085,0,0,1,50.02
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.60683,0.78108,-0.14725,111.81,-0.79406,-0.60391,0.068956,763.43,-0.035066,0.15877,0.98669,13.46
> view matrix models
> #2,-0.58633,0.78043,-0.21714,134.91,-0.80975,-0.57219,0.13001,731.85,-0.022785,0.25205,0.96744,-14.366
> view matrix models
> #2,-0.56976,0.78778,-0.23403,133.96,-0.82176,-0.54281,0.1734,707.37,0.0095692,0.29112,0.95664,-34.139
> view matrix models
> #2,-0.90227,0.43088,-0.015754,276.11,-0.3884,-0.79638,0.4636,521.92,0.18721,0.42441,0.8859,-110.1
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.90227,0.43088,-0.015754,384.21,-0.3884,-0.79638,0.4636,635.08,0.18721,0.42441,0.8859,-147.57
> view matrix models
> #2,-0.90227,0.43088,-0.015754,398.3,-0.3884,-0.79638,0.4636,624.72,0.18721,0.42441,0.8859,-53.928
> view matrix models
> #2,-0.90227,0.43088,-0.015754,398.47,-0.3884,-0.79638,0.4636,629.36,0.18721,0.42441,0.8859,-55.95
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.85082,0.52498,-0.02231,351.56,-0.4857,-0.76953,0.41463,674.36,0.20051,0.36362,0.90971,-49.905
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.85082,0.52498,-0.02231,356.75,-0.4857,-0.76953,0.41463,655.39,0.20051,0.36362,0.90971,-44.76
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.85343,0.51975,0.038975,333.23,-0.46684,-0.79552,0.38628,669.94,0.23178,0.31147,0.92156,-42.692
> view matrix models
> #2,-0.86805,0.49341,-0.055046,387.41,-0.4924,-0.84146,0.22246,764.39,0.063445,0.22021,0.97339,23.812
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.86805,0.49341,-0.055046,384.96,-0.4924,-0.84146,0.22246,789.02,0.063445,0.22021,0.97339,23.57
> view matrix models
> #2,-0.86805,0.49341,-0.055046,386.88,-0.4924,-0.84146,0.22246,779.66,0.063445,0.22021,0.97339,21.623
> fitmap #2 inMap #424
Fit map PflA-model2.mrc in map PflA.mrc using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.35
steps = 340, shift = 29, angle = 15.3 degrees
Position of PflA-model2.mrc (#2) relative to PflA.mrc (#424) coordinates:
Matrix rotation and translation
0.99999956 -0.00082292 0.00026472 0.49515113
0.00082273 0.99999936 0.00069669 0.18116252
-0.00026530 -0.00069647 0.99999967 0.07360066
Axis -0.62744923 0.23870768 0.74116537
Axis point -281.65180494 439.50881862 0.00000000
Rotation angle (degrees) 0.06360869
Shift along axis -0.21288705
> fitmap #2 inMap #424
Fit map PflA-model2.mrc in map PflA.mrc using 45973 points
correlation = 0.6737, correlation about mean = 0.6157, overlap = 24.32
steps = 40, shift = 0.0821, angle = 0.0123 degrees
Position of PflA-model2.mrc (#2) relative to PflA.mrc (#424) coordinates:
Matrix rotation and translation
0.99999954 -0.00076133 0.00046219 0.40964891
0.00076098 0.99999936 0.00075454 0.15866714
-0.00046277 -0.00075419 0.99999955 0.09000780
Axis -0.64631146 0.39623562 0.65213405
Axis point -282.74774741 416.65498840 0.00000000
Rotation angle (degrees) 0.06687455
Shift along axis -0.14319406
> fitmap #2 inMap #424
Fit map PflA-model2.mrc in map PflA.mrc using 45973 points
correlation = 0.6738, correlation about mean = 0.6157, overlap = 24.32
steps = 40, shift = 0.00508, angle = 0.00167 degrees
Position of PflA-model2.mrc (#2) relative to PflA.mrc (#424) coordinates:
Matrix rotation and translation
0.99999954 -0.00074804 0.00048599 0.39700139
0.00074767 0.99999937 0.00076491 0.15889585
-0.00048656 -0.00076455 0.99999954 0.10709948
Axis -0.65084911 0.41386302 0.63648476
Axis point 0.00000000 243.84246056 -274.88908118
Rotation angle (degrees) 0.06732091
Shift along axis -0.12445970
> hide #!424 models
> show #!424 models
> view orient
> show #!479 models
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #3, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #4, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #5, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #6, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #7, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #8, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #9, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #10, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #11, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #12, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #13, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #14, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #15, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #17, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #18, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #19, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #20, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> select add #1
4 models selected
> select subtract #1
2 models selected
> hide #!1-20 models
> show #!1-20 models
> select subtract #2
Nothing selected
> select add #1
2 models selected
> select subtract #1
Nothing selected
> select add #3
2 models selected
> select subtract #3
Nothing selected
> hide #!456 models
> hide #!1 models
> show #!1 models
> turn z 20 models #1 center #479
> volume copy #1
Opened Cage-top-Model2.mrc copy as #21, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #1 show
> surface dust #1 size 40
> surface dust #1-21 size 40
> hide #!1 models
> hide #!21 models
> show #!1 models
> close #21
> show #!459 models
> show #!442-459 models
> hide #!1 models
> show #!1 models
> hide #!446 models
> show #!446 models
> hide #!446 models
> show #!446 models
> hide #!456 models
> show #!456 models
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 84, shift = 0.079, angle = 0.00717 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999971 -0.00041188 -0.00055049 0.61370654
0.00041154 0.99999967 -0.00061953 0.08226978
0.00055074 0.00061930 0.99999959 -0.57027172
Axis 0.66935038 -0.59500570 0.44490255
Axis point 0.00000000 998.63598235 236.18786334
Rotation angle (degrees) 0.05302120
Shift along axis 0.10811838
> fitmap #1 inMap #456
Fit map Cage-top-Model2.mrc in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 40, shift = 0.0856, angle = 0.0144 degrees
Position of Cage-top-Model2.mrc (#1) relative to Cage_top.mrc copy (#456)
coordinates:
Matrix rotation and translation
0.99999974 -0.00042220 -0.00049986 0.58544853
0.00042177 0.99999949 -0.00086500 0.23768544
0.00050023 0.00086478 0.99999944 -0.64418071
Axis 0.79749549 -0.46108248 0.38910653
Axis point 0.00000000 793.08031450 331.20507414
Rotation angle (degrees) 0.06213761
Shift along axis 0.10664504
> fitmap #2 inMap #457
Fit map PflA-model2.mrc in map Cage_top.mrc copy using 45973 points
correlation = -0.03142, correlation about mean = 0.01645, overlap = -0.1915
steps = 52, shift = 1.62, angle = 0.214 degrees
Position of PflA-model2.mrc (#2) relative to Cage_top.mrc copy (#457)
coordinates:
Matrix rotation and translation
0.93950027 0.34254684 0.00088050 -116.88504647
-0.34254724 0.93950048 0.00034551 27.25775003
-0.00070888 -0.00062622 0.99999949 0.04057176
Axis -0.00141838 0.00231994 -0.99999630
Axis point 18.72284755 344.52950438 0.00000000
Rotation angle (degrees) 20.03220905
Shift along axis 0.18845251
> fitmap #3 inMap #457
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.9
steps = 64, shift = 0.372, angle = 0.0255 degrees
Position of Cage-top-Model2.mrc copy (#3) relative to Cage_top.mrc copy (#457)
coordinates:
Matrix rotation and translation
0.99999971 -0.00041675 -0.00055774 0.61136256
0.00041639 0.99999965 -0.00064738 0.12166449
0.00055801 0.00064714 0.99999957 -0.51797153
Axis 0.68087347 -0.58684642 0.43820384
Axis point 0.00000000 880.38287326 294.39345998
Rotation angle (degrees) 0.05446743
Shift along axis 0.11788506
> fitmap #4 inMap #458
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 48, shift = 0.756, angle = 0.0068 degrees
Position of Cage-top-Model2.mrc copy (#4) relative to Cage_top.mrc copy (#458)
coordinates:
Matrix rotation and translation
0.99999974 -0.00040702 -0.00049693 0.58887945
0.00040664 0.99999958 -0.00075470 0.21541634
0.00049723 0.00075449 0.99999952 -0.58208250
Axis 0.76147405 -0.50161221 0.41053922
Axis point 0.00000000 826.85221903 352.42494097
Rotation angle (degrees) 0.05677794
Shift along axis 0.10139326
> fitmap #4 inMap #458
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.973, overlap = 134.7
steps = 28, shift = 0.0261, angle = 0.00965 degrees
Position of Cage-top-Model2.mrc copy (#4) relative to Cage_top.mrc copy (#458)
coordinates:
Matrix rotation and translation
0.99999975 -0.00039165 -0.00049340 0.58407247
0.00039119 0.99999944 -0.00092236 0.29862379
0.00049376 0.00092216 0.99999938 -0.64227668
Axis 0.82575390 -0.44193356 0.35046429
Axis point 0.00000000 744.31369832 383.36188546
Rotation angle (degrees) 0.06399172
Shift along axis 0.12523320
> fitmap #5 inMap #459
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 56, shift = 1.07, angle = 0.00757 degrees
Position of Cage-top-Model2.mrc copy (#5) relative to Cage_top.mrc copy (#459)
coordinates:
Matrix rotation and translation
0.99999971 -0.00039831 -0.00055454 0.61166462
0.00039797 0.99999967 -0.00061450 0.14724128
0.00055478 0.00061428 0.99999959 -0.54688472
Axis 0.66890760 -0.60387451 0.43347225
Axis point 0.00000000 949.15567571 320.93134354
Rotation angle (degrees) 0.05262610
Shift along axis 0.08317251
> fitmap #6 inMap #442
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 112, shift = 1.39, angle = 0.0267 degrees
Position of Cage-top-Model2.mrc copy (#6) relative to Cage_top.mrc (#442)
coordinates:
Matrix rotation and translation
0.99999969 -0.00041229 -0.00057472 0.63042027
0.00041191 0.99999964 -0.00065940 0.12870841
0.00057499 0.00065916 0.99999954 -0.53017532
Axis 0.68183538 -0.59452107 0.42619856
Axis point 0.00000000 886.84866607 309.61653873
Rotation angle (degrees) 0.05540034
Shift along axis 0.12736302
> fitmap #7 inMap #443
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 68, shift = 1.57, angle = 0.0493 degrees
Position of Cage-top-Model2.mrc copy (#7) relative to Cage_top.mrc copy (#443)
coordinates:
Matrix rotation and translation
0.99999976 -0.00039862 -0.00053994 0.59361954
0.00039825 0.99999966 -0.00069960 0.17902902
0.00054022 0.00069938 0.99999958 -0.58695228
Axis 0.72157397 -0.55713337 0.41101511
Axis point 0.00000000 890.76377607 325.05485067
Rotation angle (degrees) 0.05554200
Shift along axis 0.08735111
> fitmap #8 inMap #444
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9728, overlap = 134.8
steps = 68, shift = 1.92, angle = 0.00935 degrees
Position of Cage-top-Model2.mrc copy (#8) relative to Cage_top.mrc copy (#444)
coordinates:
Matrix rotation and translation
0.99999977 -0.00031112 -0.00056449 0.57807202
0.00031105 0.99999993 -0.00011756 -0.09389881
0.00056453 0.00011737 0.99999980 -0.34626854
Axis 0.17928948 -0.86162954 0.47481556
Axis point 630.60908341 0.00000000 1017.42708713
Rotation angle (degrees) 0.03753835
Shift along axis 0.02013453
> fitmap #9 inMap #445
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9728, overlap = 134.9
steps = 76, shift = 2.03, angle = 0.0162 degrees
Position of Cage-top-Model2.mrc copy (#9) relative to Cage_top.mrc copy (#445)
coordinates:
Matrix rotation and translation
0.99999978 -0.00034314 -0.00053664 0.57442517
0.00034298 0.99999987 -0.00030380 0.00880572
0.00053674 0.00030361 0.99999978 -0.41836363
Axis 0.43038162 -0.76054767 0.48614700
Axis point 813.45208907 0.00000000 1040.31679531
Rotation angle (degrees) 0.04043170
Shift along axis 0.03713864
> fitmap #10 inMap #446
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 68, shift = 2.05, angle = 0.0585 degrees
Position of Cage-top-Model2.mrc copy (#10) relative to Cage_top.mrc copy
(#446) coordinates:
Matrix rotation and translation
0.99999971 -0.00041743 -0.00059247 0.63501128
0.00041711 0.99999974 -0.00054077 0.03966983
0.00059270 0.00054052 0.99999964 -0.54370408
Axis 0.59792752 -0.65537335 0.46148505
Axis point 997.88961710 -0.00000000 967.62927364
Rotation angle (degrees) 0.05180656
Shift along axis 0.10278087
> fitmap #11 inMap #447
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 84, shift = 2.1, angle = 0.0484 degrees
Position of Cage-top-Model2.mrc copy (#11) relative to Cage_top.mrc copy
(#447) coordinates:
Matrix rotation and translation
0.99999972 -0.00041658 -0.00057284 0.62803455
0.00041622 0.99999968 -0.00063543 0.07909301
0.00057311 0.00063519 0.99999960 -0.55919012
Axis 0.66770949 -0.60219579 0.43763486
Axis point 0.00000000 967.98892558 244.38483374
Rotation angle (degrees) 0.05451552
Shift along axis 0.12699406
> fitmap #12 inMap #448
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9728, overlap = 134.8
steps = 68, shift = 2.08, angle = 0.0191 degrees
Position of Cage-top-Model2.mrc copy (#12) relative to Cage_top.mrc copy
(#448) coordinates:
Matrix rotation and translation
0.99999976 -0.00032497 -0.00056638 0.57966097
0.00032487 0.99999990 -0.00017817 -0.02197717
0.00056644 0.00017798 0.99999978 -0.38407418
Axis 0.26309835 -0.83685371 0.48005741
Axis point 666.95076920 0.00000000 1029.46096282
Rotation angle (degrees) 0.03877951
Shift along axis -0.01347814
> fitmap #13 inMap #449
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 88, shift = 2, angle = 0.0309 degrees
Position of Cage-top-Model2.mrc copy (#13) relative to Cage_top.mrc copy
(#449) coordinates:
Matrix rotation and translation
0.99999974 -0.00037003 -0.00057105 0.60529482
0.00036978 0.99999980 -0.00044034 0.02356774
0.00057121 0.00044012 0.99999970 -0.47662110
Axis 0.54319206 -0.70471140 0.45642549
Axis point 910.46733077 0.00000000 969.57688603
Rotation angle (degrees) 0.04643513
Shift along axis 0.09464087
> fitmap #14 inMap #450
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9728, overlap = 134.9
steps = 68, shift = 1.86, angle = 0.0238 degrees
Position of Cage-top-Model2.mrc copy (#14) relative to Cage_top.mrc copy
(#450) coordinates:
Matrix rotation and translation
0.99999980 -0.00024735 -0.00051560 0.53339106
0.00024742 0.99999993 0.00013581 -0.15255301
0.00051556 -0.00013595 0.99999981 -0.23703500
Axis -0.23117919 -0.87716297 0.42088158
Axis point 387.16799677 0.00000000 994.37095837
Rotation angle (degrees) 0.03367729
Shift along axis -0.08925873
> fitmap #15 inMap #451
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 76, shift = 1.62, angle = 0.0263 degrees
Position of Cage-top-Model2.mrc copy (#15) relative to Cage_top.mrc copy
(#451) coordinates:
Matrix rotation and translation
0.99999972 -0.00041675 -0.00056738 0.61101049
0.00041637 0.99999966 -0.00066423 0.15247004
0.00056765 0.00066399 0.99999957 -0.57678916
Axis 0.68620506 -0.58639536 0.43042199
Axis point 0.00000000 921.74179097 301.16314109
Rotation angle (degrees) 0.05545101
Shift along axis 0.08160803
> fitmap #17 inMap #452
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 84, shift = 1.37, angle = 0.0235 degrees
Position of Cage-top-Model2.mrc copy (#17) relative to Cage_top.mrc copy
(#452) coordinates:
Matrix rotation and translation
0.99999973 -0.00041616 -0.00054544 0.61703475
0.00041577 0.99999962 -0.00070710 0.10984552
0.00054574 0.00070686 0.99999955 -0.58136791
Axis 0.71763902 -0.55381414 0.42223707
Axis point 0.00000000 904.13989974 261.82702872
Rotation angle (degrees) 0.05644488
Shift along axis 0.13649913
> fitmap #18 inMap #453
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9728, overlap = 134.8
steps = 60, shift = 1.07, angle = 0.0256 degrees
Position of Cage-top-Model2.mrc copy (#18) relative to Cage_top.mrc copy
(#453) coordinates:
Matrix rotation and translation
0.99999972 -0.00042591 -0.00053829 0.58921963
0.00042551 0.99999960 -0.00073008 0.12513623
0.00053860 0.00072984 0.99999953 -0.59052794
Axis 0.72850850 -0.53737031 0.42486294
Axis point 0.00000000 873.93581164 252.75879869
Rotation angle (degrees) 0.05741012
Shift along axis 0.11111358
> fitmap #19 inMap #454
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.977, correlation about mean = 0.9729, overlap = 134.8
steps = 48, shift = 0.647, angle = 0.0404 degrees
Position of Cage-top-Model2.mrc copy (#19) relative to Cage_top.mrc copy
(#454) coordinates:
Matrix rotation and translation
0.99999967 -0.00040504 -0.00063379 0.65815476
0.00040476 0.99999977 -0.00044669 0.00589315
0.00063397 0.00044643 0.99999964 -0.46758668
Axis 0.51051250 -0.72465085 0.46288025
Axis point 822.18153946 0.00000000 945.21744756
Rotation angle (degrees) 0.05011855
Shift along axis 0.11528911
> fitmap #19 inMap #454
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.8
steps = 28, shift = 0.0941, angle = 0.00867 degrees
Position of Cage-top-Model2.mrc copy (#19) relative to Cage_top.mrc copy
(#454) coordinates:
Matrix rotation and translation
0.99999973 -0.00039099 -0.00054744 0.59862579
0.00039068 0.99999972 -0.00057012 0.12411439
0.00054766 0.00056990 0.99999963 -0.52766330
Axis 0.64645734 -0.62098322 0.44325246
Axis point 0.00000000 985.17778565 300.09542746
Rotation angle (degrees) 0.05052019
Shift along axis 0.07602503
> fitmap #20 inMap #455
Fit map Cage-top-Model2.mrc copy in map Cage_top.mrc copy using 48654 points
correlation = 0.9769, correlation about mean = 0.9729, overlap = 134.7
steps = 44, shift = 0.315, angle = 0.0145 degrees
Position of Cage-top-Model2.mrc copy (#20) relative to Cage_top.mrc copy
(#455) coordinates:
Matrix rotation and translation
0.99999972 -0.00041753 -0.00054202 0.62137707
0.00041714 0.99999961 -0.00071954 0.12579665
0.00054232 0.00071930 0.99999953 -0.58171444
Axis 0.72462678 -0.54609299 0.42035518
Axis point 0.00000000 888.96003215 278.41350524
Rotation angle (degrees) 0.05688402
Shift along axis 0.13704311
> hide #!442 models
> hide #!443 models
> hide #!444 models
> hide #!445 models
> hide #!446 models
> hide #!447 models
> hide #!448 models
> hide #!449 models
> hide #!450 models
> hide #!451 models
> hide #!452 models
> hide #!453 models
> hide #!454 models
> hide #!455 models
> hide #!456 models
> hide #!457 models
> hide #!458 models
> hide #!459 models
> view orient
> hide #!425 models
> show #!425 models
> hide #!424 models
> show #!424 models
> fitmap #2 inMap #424
Fit map PflA-model2.mrc in map PflA.mrc using 45973 points
correlation = 0.6738, correlation about mean = 0.6157, overlap = 24.32
steps = 64, shift = 1.62, angle = 0.214 degrees
Position of PflA-model2.mrc (#2) relative to PflA.mrc (#424) coordinates:
Matrix rotation and translation
0.99999955 -0.00077048 0.00043264 0.42250802
0.00077016 0.99999937 0.00074323 0.16304622
-0.00043322 -0.00074290 0.99999958 0.08600934
Axis -0.64360098 0.37498102 0.66720838
Axis point -286.08138555 420.37500624 0.00000000
Rotation angle (degrees) 0.06615032
Shift along axis -0.15340118
> fitmap #2 inMap #424
Fit map PflA-model2.mrc in map PflA.mrc using 45973 points
correlation = 0.6738, correlation about mean = 0.6157, overlap = 24.32
steps = 40, shift = 0.00776, angle = 0.00348 degrees
Position of PflA-model2.mrc (#2) relative to PflA.mrc (#424) coordinates:
Matrix rotation and translation
0.99999954 -0.00074864 0.00048449 0.39678027
0.00074827 0.99999936 0.00076621 0.16069199
-0.00048506 -0.00076585 0.99999954 0.10698892
Axis -0.65161538 0.41237046 0.63666946
Axis point 0.00000000 243.07217574 -276.36781267
Rotation angle (degrees) 0.06735588
Shift along axis -0.12416692
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #21, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #22, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #23, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #24, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #25, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #27, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #28, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #29, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #30, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #31, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #37, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #38, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #39, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #40, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #41, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #48, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #49, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> turn z 20 models #2 center #479
> volume copy #2
Opened PflA-model2.mrc copy as #50, grid size 160,160,200, pixel 4.3,4.3,4.3,
shown at step 1, values float32
> volume #2 show
> close #50
> surface dust #2 size 40
> surface dust #21-25 size 40
> surface dust #27-31 size 40
> surface dust #37-41 size 40
> surface dust #48-49 size 40
> hide #!49 models
> show #!49 models
> hide #!2 models
> show #!2 models
> hide #!424 models
> show #!424 models
> hide #!2 models
> show #!2 models
> fitmap #2 inMap #424
Fit map PflA-model2.mrc in map PflA.mrc using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.36
steps = 40, shift = 0.0767, angle = 0.013 degrees
Position of PflA-model2.mrc (#2) relative to PflA.mrc (#424) coordinates:
Matrix rotation and translation
0.99999957 -0.00081265 0.00027526 0.48839896
0.00081245 0.99999936 0.00070723 0.17850439
-0.00027584 -0.00070701 0.99999966 0.08135665
Axis -0.63599093 0.24783367 0.73081736
Axis point -282.51742198 439.18634167 0.00000000
Rotation angle (degrees) 0.06370349
Shift along axis -0.20692106
> fitmap #21 inMap #425
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6741, correlation about mean = 0.6157, overlap = 24.37
steps = 48, shift = 0.354, angle = 0.0158 degrees
Position of PflA-model2.mrc copy (#21) relative to PflA.mrc copy (#425)
coordinates:
Matrix rotation and translation
0.99999956 -0.00079324 0.00037042 0.44673869
0.00079297 0.99999937 0.00072428 0.18921110
-0.00037099 -0.00072398 0.99999962 0.13965278
Axis -0.63736316 0.32628707 0.69807231
Axis point -289.91884621 462.47741224 -0.00000000
Rotation angle (degrees) 0.06509566
Shift along axis -0.12550991
> fitmap #22 inMap #426
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.36
steps = 48, shift = 0.712, angle = 0.00672 degrees
Position of PflA-model2.mrc copy (#22) relative to PflA.mrc copy (#426)
coordinates:
Matrix rotation and translation
0.99999955 -0.00077527 0.00042095 0.42407331
0.00077495 0.99999937 0.00074252 0.18358775
-0.00042152 -0.00074219 0.99999958 0.15159227
Axis -0.64386794 0.36535014 0.67227476
Axis point -285.61902684 460.72248998 0.00000000
Rotation angle (degrees) 0.06606007
Shift along axis -0.10406174
> fitmap #23 inMap #427
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.35
steps = 64, shift = 1.03, angle = 0.0136 degrees
Position of PflA-model2.mrc copy (#23) relative to PflA.mrc copy (#427)
coordinates:
Matrix rotation and translation
0.99999957 -0.00079211 0.00034691 0.45671414
0.00079186 0.99999936 0.00072733 0.17708655
-0.00034749 -0.00072706 0.99999962 0.10778347
Axis -0.64361097 0.30729179 0.70095412
Axis point -286.94386121 443.47717826 0.00000000
Rotation angle (degrees) 0.06473669
Shift along axis -0.16397772
> fitmap #24 inMap #428
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.35
steps = 44, shift = 1.34, angle = 0.013 degrees
Position of PflA-model2.mrc copy (#24) relative to PflA.mrc copy (#428)
coordinates:
Matrix rotation and translation
0.99999956 -0.00079008 0.00036258 0.44785747
0.00078982 0.99999936 0.00073246 0.17450251
-0.00036316 -0.00073218 0.99999961 0.10552314
Axis -0.64427526 0.31924212 0.69497759
Axis point -285.08802658 436.92075700 0.00000000
Rotation angle (degrees) 0.06512566
Shift along axis -0.15949871
> fitmap #25 inMap #429
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.35
steps = 48, shift = 1.62, angle = 0.0152 degrees
Position of PflA-model2.mrc copy (#25) relative to PflA.mrc copy (#429)
coordinates:
Matrix rotation and translation
0.99999957 -0.00080556 0.00029239 0.48027132
0.00080535 0.99999936 0.00071405 0.17697380
-0.00029296 -0.00071381 0.99999965 0.08536190
Axis -0.64006794 0.26239492 0.72212321
Axis point -284.37708762 437.94849981 0.00000000
Rotation angle (degrees) 0.06390746
Shift along axis -0.19932743
> fitmap #27 inMap #430
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6738, correlation about mean = 0.6158, overlap = 24.32
steps = 64, shift = 1.83, angle = 0.0184 degrees
Position of PflA-model2.mrc copy (#27) relative to PflA.mrc copy (#430)
coordinates:
Matrix rotation and translation
0.99999957 -0.00079063 0.00034503 0.46029959
0.00079037 0.99999936 0.00072656 0.15729231
-0.00034560 -0.00072628 0.99999962 0.04566159
Axis -0.64413294 0.30619737 0.70095359
Axis point -282.51965171 406.08680521 0.00000000
Rotation angle (degrees) 0.06461532
Shift along axis -0.21632498
> fitmap #28 inMap #431
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6741, correlation about mean = 0.6157, overlap = 24.36
steps = 52, shift = 1.97, angle = 0.0185 degrees
Position of PflA-model2.mrc copy (#28) relative to PflA.mrc copy (#431)
coordinates:
Matrix rotation and translation
0.99999958 -0.00081319 0.00026321 0.49242647
0.00081300 0.99999936 0.00070561 0.18020980
-0.00026379 -0.00070540 0.99999966 0.08395995
Axis -0.63657559 0.23775479 0.73365127
Axis point -282.47199394 442.05127647 0.00000000
Rotation angle (degrees) 0.06350001
Shift along axis -0.20902360
> fitmap #29 inMap #432
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6737, correlation about mean = 0.6158, overlap = 24.31
steps = 48, shift = 2.1, angle = 0.0137 degrees
Position of PflA-model2.mrc copy (#29) relative to PflA.mrc copy (#432)
coordinates:
Matrix rotation and translation
0.99999956 -0.00078488 0.00038355 0.44510105
0.00078460 0.99999937 0.00073131 0.15472770
-0.00038413 -0.00073101 0.99999961 0.05018669
Axis -0.64182744 0.33694153 0.68885989
Axis point -282.35592116 404.52275836 0.00000000
Rotation angle (degrees) 0.06527080
Shift along axis -0.19897228
> fitmap #30 inMap #433
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.35
steps = 48, shift = 2.12, angle = 0.0124 degrees
Position of PflA-model2.mrc copy (#30) relative to PflA.mrc copy (#433)
coordinates:
Matrix rotation and translation
0.99999956 -0.00078924 0.00035975 0.44931181
0.00078898 0.99999936 0.00073164 0.17388718
-0.00036033 -0.00073135 0.99999962 0.10250031
Axis -0.64469296 0.31731695 0.69547174
Axis point -285.71471598 436.11850389 0.00000000
Rotation angle (degrees) 0.06500999
Shift along axis -0.16320474
> fitmap #31 inMap #434
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6741, correlation about mean = 0.6157, overlap = 24.36
steps = 64, shift = 2.09, angle = 0.0159 degrees
Position of PflA-model2.mrc copy (#31) relative to PflA.mrc copy (#434)
coordinates:
Matrix rotation and translation
0.99999957 -0.00081099 0.00029340 0.48039954
0.00081078 0.99999936 0.00070780 0.18406438
-0.00029397 -0.00070756 0.99999965 0.09849894
Axis -0.63434253 0.26325108 0.72684828
Axis point -286.66747129 448.03360230 -0.00000000
Rotation angle (degrees) 0.06392018
Shift along axis -0.18468893
> fitmap #37 inMap #435
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.36
steps = 52, shift = 1.99, angle = 0.0108 degrees
Position of PflA-model2.mrc copy (#37) relative to PflA.mrc copy (#435)
coordinates:
Matrix rotation and translation
0.99999953 -0.00080198 0.00042917 0.42844976
0.00080168 0.99999937 0.00069914 0.20652326
-0.00042973 -0.00069879 0.99999961 0.14199424
Axis -0.60931801 0.37436720 0.69898553
Axis point -296.73951860 470.19829824 0.00000000
Rotation angle (degrees) 0.06572572
Shift along axis -0.08449470
> fitmap #38 inMap #436
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6737, correlation about mean = 0.6158, overlap = 24.31
steps = 48, shift = 1.85, angle = 0.0123 degrees
Position of PflA-model2.mrc copy (#38) relative to PflA.mrc copy (#436)
coordinates:
Matrix rotation and translation
0.99999956 -0.00078453 0.00036922 0.45021384
0.00078426 0.99999936 0.00073207 0.15796048
-0.00036980 -0.00073178 0.99999961 0.04879273
Axis -0.64504406 0.32564951 0.69128182
Axis point -286.33886318 405.25525611 -0.00000000
Rotation angle (degrees) 0.06501305
Shift along axis -0.20523848
> fitmap #39 inMap #437
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.35
steps = 44, shift = 1.64, angle = 0.0136 degrees
Position of PflA-model2.mrc copy (#39) relative to PflA.mrc copy (#437)
coordinates:
Matrix rotation and translation
0.99999956 -0.00078157 0.00037328 0.44414871
0.00078130 0.99999936 0.00073531 0.17386367
-0.00037385 -0.00073502 0.99999961 0.10667918
Axis -0.64711381 0.32881978 0.68783812
Axis point -288.22917139 438.53512732 0.00000000
Rotation angle (degrees) 0.06509210
Shift along axis -0.15686694
> fitmap #40 inMap #438
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6738, correlation about mean = 0.6157, overlap = 24.33
steps = 48, shift = 1.38, angle = 0.00995 degrees
Position of PflA-model2.mrc copy (#40) relative to PflA.mrc copy (#438)
coordinates:
Matrix rotation and translation
0.99999956 -0.00077965 0.00040123 0.43526522
0.00077936 0.99999936 0.00073699 0.16328996
-0.00040180 -0.00073668 0.99999959 0.08091182
Axis -0.64334293 0.35056773 0.68059691
Axis point -284.64824549 420.03026356 0.00000000
Rotation angle (degrees) 0.06562240
Shift along axis -0.16771228
> fitmap #41 inMap #439
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.36
steps = 60, shift = 1.08, angle = 0.0202 degrees
Position of PflA-model2.mrc copy (#41) relative to PflA.mrc copy (#439)
coordinates:
Matrix rotation and translation
0.99999957 -0.00081881 0.00025241 0.49828349
0.00081864 0.99999936 0.00070128 0.17914066
-0.00025298 -0.00070107 0.99999967 0.07359256
Axis -0.63330651 0.22823752 0.73947989
Axis point -279.92584940 438.31054490 0.00000000
Rotation angle (degrees) 0.06343579
Shift along axis -0.22025933
> fitmap #48 inMap #440
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.6741, correlation about mean = 0.6157, overlap = 24.36
steps = 60, shift = 0.75, angle = 0.0174 degrees
Position of PflA-model2.mrc copy (#48) relative to PflA.mrc copy (#440)
coordinates:
Matrix rotation and translation
0.99999958 -0.00078924 0.00030618 0.46993781
0.00078901 0.99999936 0.00072902 0.17290480
-0.00030675 -0.00072878 0.99999963 0.10142164
Axis -0.65248739 0.27433571 0.70639941
Axis point -284.02853449 440.50817341 0.00000000
Rotation angle (degrees) 0.06400566
Shift along axis -0.18755035
> fitmap #49 inMap #441
Fit map PflA-model2.mrc copy in map PflA.mrc copy using 45973 points
correlation = 0.674, correlation about mean = 0.6157, overlap = 24.36
steps = 60, shift = 0.416, angle = 0.0179 degrees
Position of PflA-model2.mrc copy (#49) relative to PflA.mrc copy (#441)
coordinates:
Matrix rotation and translation
0.99999957 -0.00081175 0.00028264 0.48534359
0.00081155 0.99999936 0.00070793 0.17942943
-0.00028322 -0.00070770 0.99999966 0.08534600
Axis -0.63568000 0.25409638 0.72893481
Axis point -283.62619375 440.84593406 0.00000000
Rotation angle (degrees) 0.06379710
Shift along axis -0.20071917
> color #1 #567ba9ff models
> color #3-15 #567ba9ff models
> color #17-20 #567ba9ff models
> color #2 #f9ff26ff models
> color #21-25 #f9ff26ff models
> color #27-31 #f9ff26ff models
> color #37-41 #f9ff26ff models
> color #48-49 #f9ff26ff models
> hide #!424 models
> hide #!424-441 models
> select add #2
2 models selected
> select subtract #2
Nothing selected
> hide #!1 models
> ui mousemode right zoom
> select add #505
12939 atoms, 13062 bonds, 791 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #505,0.88311,-0.45699,-0.10623,295.37,-0.21179,-0.18625,-0.9594,430.67,0.41865,0.86975,-0.26127,503.45
> view matrix models
> #505,-0.68225,-0.16615,0.71199,282.57,-0.70646,0.40062,-0.58346,430.8,-0.18829,-0.90106,-0.3907,482.6
> ui mousemode right "translate selected models"
> view matrix models
> #505,-0.68225,-0.16615,0.71199,133.97,-0.70646,0.40062,-0.58346,420.79,-0.18829,-0.90106,-0.3907,417.53
> view matrix models
> #505,-0.68225,-0.16615,0.71199,141.16,-0.70646,0.40062,-0.58346,381.63,-0.18829,-0.90106,-0.3907,483.71
> color #2 #f9ff2653 models
> color #2 #f9ff2645 models
> view matrix models
> #505,-0.68225,-0.16615,0.71199,140.53,-0.70646,0.40062,-0.58346,385.6,-0.18829,-0.90106,-0.3907,483.25
> ui mousemode right "rotate selected models"
> view matrix models
> #505,-0.71073,0.014572,0.70331,142.19,-0.4908,-0.72651,-0.48093,375.16,0.50396,-0.687,0.52351,484.14
> view matrix models
> #505,-0.72349,0.038026,0.68928,142.43,-0.42085,-0.81578,-0.39673,374.2,0.54722,-0.57711,0.60621,484.99
> ui mousemode right "translate selected models"
> view matrix models
> #505,-0.72349,0.038026,0.68928,244.6,-0.42085,-0.81578,-0.39673,431.77,0.54722,-0.57711,0.60621,501.23
> ui mousemode right "rotate selected models"
> view matrix models
> #505,-0.62495,0.2864,0.72624,247.49,-0.64332,-0.71593,-0.27126,430.47,0.44225,-0.63672,0.63166,499.77
> ui mousemode right "translate selected models"
> view matrix models
> #505,-0.62495,0.2864,0.72624,258.27,-0.64332,-0.71593,-0.27126,412.9,0.44225,-0.63672,0.63166,503.28
> ui mousemode right "rotate selected models"
> view matrix models
> #505,-0.57397,0.34296,0.7436,259.06,-0.70204,-0.67356,-0.23123,412.67,0.42155,-0.65475,0.62737,502.99
> view matrix models
> #505,-0.58254,0.22607,0.78073,257.61,-0.74028,-0.54419,-0.39477,414.75,0.33562,-0.80793,0.48437,501.8
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #505,-0.58254,0.22607,0.78073,257.49,-0.74028,-0.54419,-0.39477,416.69,0.33562,-0.80793,0.48437,502.56
> fitmap #505 inMap #2
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA-model2.mrc (#2) using
12939 atoms
average map value = 0.0773, steps = 84
shifted from previous position = 5.46
rotated from previous position = 11.2 degrees
atoms outside contour = 4542, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA-model2.mrc (#2)
coordinates:
Matrix rotation and translation
0.91893020 0.00053901 -0.39441986 320.64987727
0.32243880 0.57490053 0.75201239 352.16288693
0.22715752 -0.81822315 0.52811965 393.78827562
Axis -0.91335726 -0.36155226 0.18723911
Axis point 0.00000000 553.96640934 11.42476234
Rotation angle (degrees) 59.27119220
Shift along axis -346.46061348
> fitmap #505 inMap #2
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA-model2.mrc (#2) using
12939 atoms
average map value = 0.0773, steps = 44
shifted from previous position = 0.0857
rotated from previous position = 0.0521 degrees
atoms outside contour = 4547, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA-model2.mrc (#2)
coordinates:
Matrix rotation and translation
0.91880954 0.00118584 -0.39469944 320.66428856
0.32245385 0.57444107 0.75235696 352.17311221
0.22762374 -0.81854510 0.52741955 393.70141412
Axis -0.91334100 -0.36182604 0.18678902
Axis point 0.00000000 553.36603556 11.67573657
Rotation angle (degrees) 59.31384876
Shift along axis -346.76214391
> fitmap #505 inMap #2
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA-model2.mrc (#2) using
12939 atoms
average map value = 0.0773, steps = 48
shifted from previous position = 0.0773
rotated from previous position = 0.0272 degrees
atoms outside contour = 4544, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA-model2.mrc (#2)
coordinates:
Matrix rotation and translation
0.91887064 0.00108946 -0.39455745 320.66677016
0.32228858 0.57480026 0.75215342 352.16004287
0.22761117 -0.81829304 0.52781595 393.77957113
Axis -0.91333361 -0.36183819 0.18680162
Axis point 0.00000000 553.67922958 11.60499075
Rotation angle (degrees) 59.28663882
Shift along axis -346.74202837
> fitmap #505 inMap #2
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA-model2.mrc (#2) using
12939 atoms
average map value = 0.0773, steps = 28
shifted from previous position = 0.0804
rotated from previous position = 0.0112 degrees
atoms outside contour = 4548, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA-model2.mrc (#2)
coordinates:
Matrix rotation and translation
0.91883418 0.00112455 -0.39464227 320.66641691
0.32230123 0.57493770 0.75204294 352.17390606
0.22774043 -0.81819643 0.52790996 393.70122086
Axis -0.91327470 -0.36198709 0.18680116
Axis point 0.00000000 553.67663610 11.57979327
Rotation angle (degrees) 59.28014145
Shift along axis -346.79508772
> fitmap #505 inMap #2
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA-model2.mrc (#2) using
12939 atoms
average map value = 0.0773, steps = 48
shifted from previous position = 0.0182
rotated from previous position = 0.0416 degrees
atoms outside contour = 4548, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA-model2.mrc (#2)
coordinates:
Matrix rotation and translation
0.91877104 0.00164668 -0.39478740 320.68082649
0.32225386 0.57454480 0.75236345 352.17588253
0.22806194 -0.81847150 0.52734446 393.68570862
Axis -0.91329887 -0.36213072 0.18640417
Axis point 0.00000000 553.22908516 11.78588068
Rotation angle (degrees) 59.31417706
Shift along axis -347.02648739
> fitmap #505 inMap #2
Fit molecule PflA_afold_11232021.pdb (#505) to map PflA-model2.mrc (#2) using
12939 atoms
average map value = 0.0773, steps = 40
shifted from previous position = 0.0289
rotated from previous position = 0.045 degrees
atoms outside contour = 4546, contour level = 0.0071157
Position of PflA_afold_11232021.pdb (#505) relative to PflA-model2.mrc (#2)
coordinates:
Matrix rotation and translation
0.91887304 0.00093089 -0.39455227 320.66098908
0.32239425 0.57470602 0.75218014 352.17289423
0.22745176 -0.81835942 0.52778175 393.70973744
Axis -0.91334798 -0.36172672 0.18694716
Axis point 0.00000000 553.62988524 11.53932454
Rotation angle (degrees) 59.29083867
Shift along axis -346.66249424
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #505,-0.72826,0.23057,0.64535,259.65,-0.63324,-0.58643,-0.50508,411.56,0.262,-0.77649,0.57308,505.05
> ui mousemode right "translate selected models"
> view matrix models
> #505,-0.72826,0.23057,0.64535,256.75,-0.63324,-0.58643,-0.50508,419.23,0.262,-0.77649,0.57308,499.19
> ui mousemode right "rotate selected models"
> view matrix models
> #505,-0.68592,0.15929,0.71003,255.91,-0.64429,-0.58649,-0.49084,419.07,0.33824,-0.79414,0.50492,499.96
> view matrix models
> #505,-0.69372,0.1724,0.69931,256.06,-0.63269,-0.60982,-0.4773,418.83,0.34416,-0.77356,0.53212,500.03
> view matrix models
> #505,-0.64584,0.23947,0.72495,256.88,-0.691,-0.58714,-0.42165,418.31,0.32467,-0.77325,0.54467,499.82
> select subtract #505
Nothing selected
> view orient
> sym #505 C18 copies true center #479
Made 18 copies for PflA_afold_11232021.pdb symmetry C18
> hide #!50 models
> color #2 #f9ff26ff models
> show #!1 models
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/For-MB-
> poster-2023/Insitu-model1.cxs includeMaps true
> hide #!479 models
> show #!492 models
> show #!492.1 models
> show #!492.2 models
> show #!492.15 models
> show #!492.16 models
> show #!492.17 models
> show #!492.18 models
> hide #!2 models
> hide #!21-25 models
> hide #!27-31 models
> hide #!37-41 models
> hide #!48 models
> hide #!49 models
> show #!177 models
> show #!177-259 models
> hide #!16 models
> show #!498 models
> show #!497 models
> show #!494 models
> hide #!497.32 models
> show #!497.32 models
> show #!494.1 models
> show #!494.2 models
> show #!494.15 models
> show #!494.16 models
> show #!494.17 models
> show #!494.18 models
> show #!504 models
> show #!504.1 models
> show #!504.11 models
> show #!504.12 models
> show #!504.13 models
> show #!512 models
> show #!506 models
> hide #!506 models
> show #!50 models
> select add #50
232902 atoms, 235116 bonds, 14238 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
> select subtract #50
18 models selected
> show #!356-373 models
> show #!113 models
> view Side1
> turn z 0.1
[Repeated 2 time(s)]
> view name Side1
> turn x 90
> ui tool show "Side View"
> color #113 #9292927f models
> color #113 #92929254 models
> color #113 #92929273 models
> save /Users/shoichitachiyama/Desktop/Model-top.png supersample 2
> transparentBackground true
> view Side
Expected an objects specifier or a view name or a keyword
> view Side1
> hide #!362 models
> show #!362 models
> hide #!357 models
> show #!357 models
> hide #!357 models
> show #!357 models
> hide #!357 models
> show #!357 models
> hide #!371 models
> hide #!372 models
> hide #!373 models
> hide #!370 models
> hide #!369 models
> hide #!368 models
> hide #!356 models
> show #!16 models
> hide #!20 models
> hide #!19 models
> hide #!18 models
> hide #!17 models
> hide #!1 models
> hide #!3 models
> hide #!4 models
> hide #!50.1 models
> hide #!50.2 models
> hide #!50.3 models
> hide #!50.18 models
> hide #!50.17 models
> hide #!50.16 models
> show #!50.16 models
> hide #!50.15 models
> hide #!50.16 models
> hide #!177 models
> show #!177 models
> hide #!201 models
> hide #!202 models
> hide #!200 models
> hide #!199 models
> hide #!198 models
> show #!198 models
> show #!199 models
> hide #!203 models
> hide #!204 models
> hide #!205 models
> hide #!206 models
> hide #!207 models
> hide #!208 models
> hide #!209 models
> hide #!210 models
> hide #!248 models
> show #!248 models
> show #!481 models
> show #!484 models
> hide #!504.2 models
> show #!504.2 models
> hide #!504.10 models
> show #!504.10 models
> hide #!504.13 models
> hide #!504.12 models
> hide #!504.11 models
> hide #!504.1 models
> hide #!504.10 models
> show #!513 models
> show #!514 models
> hide #!494.6 models
> show #!494.6 models
> hide #!494.13 models
> show #!494.13 models
> hide #!494.1 models
> hide #!494.18 models
> hide #!494.17 models
> hide #!494.16 models
> hide #!494.15 models
> hide #!494.2 models
> hide #!492.11 models
> show #!492.11 models
> hide #!492.1 models
> hide #!492.2 models
> hide #!492.18 models
> hide #!492.17 models
> hide #!492.16 models
> hide #!492.15 models
> show #!493 models
> show #!115 models
> color #113 #929292f6 models
> color #113 #929292f7 models
> color #115 #2492a3ff models
> color #115 #2494a3ff models
> color #115 #0599a3ff models
> color #115 #0b8aa3ff models
> color #115 #0c91a3ff models
> color #115 #0b91a3ff models
> show #!313 models
> show #!316 models
> show #!312 models
> volume #312 region 120,0,0,239,239,239
> volume #316 region 120,0,0,239,239,239
> volume #314 region 120,0,0,239,239,239
No volumes specified
> volume #514 region 120,0,0,239,239,239
> volume #513 region 120,0,0,239,239,239
> volume #16 region 120,0,0,239,239,239
> color #115 #00e6ffff models
> color #115 #007c8aff models
> color #115 #0090a0ff models
> color #115 #008e9eff models
> volume #313 region 59,0,0,239,239,239
> save /Users/shoichitachiyama/Desktop/Model_side.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/For-MB-
> poster-2023/Insitu-model2.cxs includeMaps true
> turn x 90
[Repeated 3 time(s)]
> show #!1 models
> show #!3 models
> show #!4 models
> show #!18 models
> show #!19 models
> show #!17 models
> show #!20 models
> show #!50.1 models
> show #!50.2 models
> show #!50.3 models
> show #!50.15 models
> show #!50.16 models
> show #!50.17 models
> show #!50.18 models
> hide #!115 models
> color #113 #92929273 models
> show #!200 models
> show #!201 models
> show #!202 models
> show #!203 models
> show #!204 models
> show #!205 models
> show #!206 models
> show #!207 models
> show #!208 models
> show #!209 models
> show #!210 models
> show #!356 models
> show #!368 models
> show #!369 models
> show #!370 models
> show #!371 models
> show #!372 models
> show #!373 models
> show #!377 models
> show #!378 models
> show #!379 models
> show #!380-418 models
> show #!493.1 models
> show #!493.2 models
> show #!493.15 models
> show #!493.16 models
> show #!493.17 models
> show #!493.18 models
> hide #!494.4 models
> show #!494.4 models
> show #!494.1 models
> show #!494.2 models
> show #!494.15 models
> show #!494.16 models
> show #!494.17 models
> show #!494.18 models
> show #!504.1 models
> show #!504.10 models
> show #!504.11 models
> show #!504.12 models
> show #!504.13 models
> hide #!513 models
> hide #!514 models
> hide #!16 models
> hide #!312 models
> hide #!313 models
> hide #!316 models
> turn x 90
> save /Users/shoichitachiyama/Desktop/Model-top.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/For-MB-
> poster-2023/Insitu-model2.cxs includeMaps true
> hide #!50 models
> hide #!504 models
> hide #!498 models
> hide #!497 models
> hide #!494 models
> hide #!493 models
> hide #!492 models
> show #!511 models
> hide #!511 models
> show #!479 models
> show #!460 models
> show #!460-477 modelstrue
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #!460-477 models
> color #460 #e5b97fff models
> color #460-477 #e5b97fff models
> show #!281 models
> show #!281-298 models
> hide #!512 models
> show #!2 models
> show #!21 models
> show #!21-49 models
> save /Users/shoichitachiyama/Desktop/Insitu_intro.png supersample 2
> transparentBackground true
> view Side1
> show #!514 models
> show #!513 models
> show #!316 models
> show #!313 models
> show #!312 models
> color #113 #929292ff models
> show #!115 models
> hide #!370 models
> hide #!371 models
> hide #!372 models
> hide #!373 models
> hide #!369 models
> hide #!356 models
> hide #!416 models
> hide #!415 models
> hide #!391 models
> hide #!417 models
> hide #!418 models
> hide #!377 models
> hide #!378 models
> hide #!17 models
> show #!16 models
> show #!17 models
> hide #!10 models
> show #!10 models
> hide #!6 models
> show #!6 models
> hide #!3 models
> hide #!1 models
> hide #!20 models
> hide #!19 models
> hide #!18 models
> hide #!4 models
> hide #!23 models
> show #!23 models
> hide #!22 models
> hide #!21 models
> hide #!2 models
> hide #!49 models
> hide #!48 models
> hide #!41 models
> hide #!471 models
> show #!471 models
> hide #!476 models
> hide #!477 models
> hide #!460 models
> hide #!461 models
> hide #!475 models
> hide #!474 models
> hide #!46 models
> hide #!47 models
> show #!47 models
> hide #!45 models
> hide #!44 models
> hide #!43 models
> hide #!42 models
> hide #!198 models
> show #!198 models
> hide #!209 models
> hide #!210 models
> hide #!208 models
> hide #!207 models
> hide #!206 models
> hide #!205 models
> hide #!204 models
> hide #!203 models
> hide #!202 models
> hide #!201 models
> hide #!200 models
> hide #!199 models
> hide #!298 models
> show #!298 models
> hide #!284 models
> show #!284 models
> hide #!290 models
> hide #!291 models
> hide #!289 models
> hide #!292 models
> hide #!288 models
> hide #!287 models
> save /Users/shoichitachiyama/Desktop/Insitu_intro_side.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/2023-July_Maps/Using_PilNO_Surface_rendering/For-MB-
> poster-2023/Insitu-introduction.cxs includeMaps true
——— End of log from Sun Sep 3 22:34:08 2023 ———
opened ChimeraX session
> open /Volumes/Backup-95/Chimera-2023/Maps-old/Chimera-Hp-figuire-
> part2/PlfB.mrc
Opened PlfB.mrc as #51, grid size 250,250,250, pixel 4.3, shown at level
0.0134, step 1, values float32
> surface dust #51 size 12.6
> surface dust #51 size 30
> surface dust #51 size 40
> view Side1
> color #51 #f9ff26ff models
> volume #51 region 120,0,0,239,239,239
> save /Users/shoichitachiyama/Desktop/image-1.png supersample 2
> transparentBackground true
> turn x 90
> ui tool show "Side View"
> show #!1 models
> show #!1-4 models
> show #!18-49 models
> volume #51 region 0,0,0,239,239,239
> show #!54 models
> show #!54-59 models
> show #!199-210 models
> show #!287-292 models
> hide #!115 models
> hide #!313 models
> show #!474 models
> show #!475 models
> show #!476 models
> show #!477 models
> show #!461 models
> show #!460 models
> save /Users/shoichitachiyama/Desktop/image-2.png supersample 2
> transparentBackground true
> turn x 90
[Repeated 2 time(s)]
> hide #!368 models
> show #!368 models
> hide #!357 models
> show #!357 models
> show #!115 models
> hide #!1 models
> hide #!3 models
> hide #!2 models
> hide #!5 models
> hide #!4 models
> show #!5 models
> show #!4 models
> hide #!4 models
> hide #!20 models
> hide #!19 models
> hide #!18 models
> hide #!21 models
> hide #!22 models
> hide #!49 models
> hide #!48 models
> hide #!41 models
> show #!482 models
> hide #!482 models
> hide #!476 models
> hide #!477 models
> hide #!475 models
> hide #!474 models
> hide #!460 models
> hide #!461 models
> hide #!462 models
> show #!462 models
> hide #!51 models
> show #!510 models
> show #!512 models
> show #!313 models
> volume #510 region 120,0,0,239,239,239
> volume #510 region 110,0,0,239,239,239
> volume #510 region 100,0,0,239,239,239
> volume #510 region 90,0,0,239,239,239
> volume #510 region 98,0,0,239,239,239
> volume #510 region 105,0,0,239,239,239
> hide #!298 models
> show #!298 models
> hide #!281 models
> show #!281 models
> hide #!282 models
> show #!282 models
> hide #!292 models
> hide #!293 models
> hide #!291 models
> show #!293 models
> hide #!290 models
> hide #!289 models
> hide #!288 models
> hide #!287 models
> hide #!286 models
> show #!286 models
> hide #!59 models
> show #!59 models
> hide #!47 models
> show #!47 models
> hide #!46 models
> hide #!45 models
> hide #!44 models
> hide #!43 models
> hide #!42 models
> save /Users/shoichitachiyama/Desktop/image-3.png supersample 2
> transparentBackground true
> turn x 90
> hide #!115 models
> show #!46 models
> show #!1-46 models
> show #!48 models
> show #!49 models
> volume #510 region 0,0,0,239,239,239
> view Side1
> turn x 90
> hide #!313 models
> save /Users/shoichitachiyama/Desktop/image-3.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-
> project/Meeting/Using_meeting.cxs includeMaps true
——— End of log from Tue Sep 5 21:28:34 2023 ———
opened ChimeraX session
> show #505 models
> hide #505 models
> show #!506 models
> show #505 models
> hide #!506 models
> hide #!37 models
> hide #!38 models
> hide #!39 models
> hide #!40 models
> hide #!42 models
> hide #505 models
> show #!506 models
> hide #!506 models
> show #!50 models
> color #1 #b7916aff models
> color #3-15 #b7916aff models
> color #17-20 #b7916aff models
> show #!460 models
> show #!461 models
> color #460-477 #b7916aff models
> show #!356 models
> color #356-373 #4a9ed2ff models
> show #!369 models
> show #!370 models
> show #!371 models
> show #!372 models
> show #!373 models
> show #!377 models
> show #!378 models
> show #!391 models
> show #!415 models
> show #!416 models
> show #!417 models
> show #!418 models
> color #377-418 #d3e6ebff models
> show #!51 models
> hide #!51 models
> show #!37 models
> show #!38 models
> show #!39 models
> show #!40 models
> show #!51 models
> hide #!51 models
> hide #!50 models
> color #510 #ffb2fffa models
> color #510 #ffb2ffff models
> color #512 #6e6da3ff models
> color #512 #d8d0fbff models
> color #512 #96abfbff models
> color #512 #8a8dfbff models
> color #512 #8c8fffff models
> color #2 #929292ff models
> color #21-25 #929292ff models
> color #27-31 #929292ff models
> color #37-41 #929292ff models
> color #48-49 #929292ff models
> view name Top1
> save /Users/shoichitachiyama/Desktop/Top-view1.png supersample 2
> transparentBackground true
> view Top1
> color #2 #fdff31ff models
> color #21-25 #fdff31ff models
> color #27-31 #fdff31ff models
> color #37-41 #fdff31ff models
> color #48-49 #fdff31ff models
> save /Users/shoichitachiyama/Desktop/Top-view2.png supersample 2
> transparentBackground true
> hide #!1 models
> show #!1 models
> save /Users/shoichitachiyama/Desktop/Must-use-this-for-RIP.cxs includeMaps
> true
> color #26- #929292ff models
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #26 #929292ff models
> show #!42 models
> color #32-36 #929292ff models
> color #42-47 #929292ff models
> color #54-59 #929292ff models
> save /Users/shoichitachiyama/Desktop/Top-view2.png supersample 2
> transparentBackground true
> color #2 #929292ff models
> color #21-25 #929292ff models
> color #27-31 #929292ff models
> color #37-41 #929292ff models
> color #48-49 #929292ff models
> save /Users/shoichitachiyama/Desktop/Top-view1.png supersample 2
> transparentBackground true
> hide #!1 models
> show #!1 models
> save /Users/shoichitachiyama/Desktop/Must-use-this-for-RIP.cxs includeMaps
> true
> hide #!1 models
> hide #!1-49 models
> hide #!1-59 models
> color #177-298 #929292ff models
> hide #!1-59 models
> hide #!281-298 models
> hide #!312 models
> hide #!460-477 models
> hide #!356-418 models
> hide #!510 models
> hide #!513 models
> hide #!514 models
> show #!504 models
> show #!50 models
> show #!486 models
> show #!488 models
> show #!446 models
> hide #!446 models
> show #!371 models
> hide #!371 models
> color #486 #4a9ed2ff models
> color #488 #4a9ed2ff models
> hide #!316 models
> show #489 models
> hide #489 models
> show #!493 models
> show #!501 models
> show #!502 models
> color #501 #d3e6ebff models
> color #502 #d3e6ebff models
> show #!494 models
> color #494 #575dbfff models
> color #494 #6c7ebfff models
> color #494 #5f70bfff models
> show #489 models
> hide #489 models
> show #!492 models
> color #492 #bf5f00ff models
> color #492 #e47100ff models
> turn x 90
[Repeated 6 time(s)]
> color #492 #bb6a00ff models
> color #492 #a55d00ff models
> color #494 #758fcbff models
> color #494 #3e4ccbff models
> color #494 #2a3dcbff models
> color #494 #2842cbff models
> color #494 #233ab2ff models
> color #494 #2136a8ff models
> color #494 #2a45d4ff models
> color #494 #2238afff models
> color #494 #2238adff models
> turn x 90
> save /Users/shoichitachiyama/Desktop/Top-view3.png supersample 2
> transparentBackground true
> turn x 90
[Repeated 2 time(s)]
> hide #!205 models
> hide #!206 models
> hide #!204 models
> hide #!203 models
> hide #!207 models
> hide #!208 models
> hide #!202 models
> hide #!201 models
> hide #!209 models
> hide #!486.1 models
> hide #!486.2 models
> hide #!486.5 models
> show #!486.5 models
> hide #!486.3 models
> hide #!486.18 models
> hide #!486.17 models
> hide #!486.16 models
> hide #!488.1 models
> hide #!488.2 models
> hide #!488.18 models
> hide #!488.17 models
> hide #!488.16 models
> hide #!50.18 models
> hide #!50.17 models
> hide #!50.1 models
> hide #!50.2 models
> hide #!50.3 models
> hide #!50.16 models
> hide #!494.17 models
> hide #!494.18 models
> hide #!494 models
> show #!494 models
> hide #!494.1 models
> hide #!494.2 models
> hide #!494.16 models
> hide #!494.15 models
> hide #!493.1 models
> hide #!493.2 models
> hide #!493.18 models
> hide #!493.17 models
> hide #!493.16 models
> hide #!493.15 models
> hide #!493.14 models
> hide #!504.12 models
> hide #!504.13 models
> hide #!504.11 models
> hide #!504.10 models
> hide #!504 models
> show #!504 models
> hide #!504.1 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> hide #!501.4 models
> show #!501.4 models
> hide #!502 models
> hide #!501.18 models
> hide #!501.17 models
> hide #!501.16 models
> show #!501.16 models
> hide #!501.16 models
> show #!501.3 models
> hide #!501.3 models
> hide #!502.18 models
> show #!502.18 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!502.3 models
> show #!502.3 models
> hide #!502.18 models
> hide #!502.16 models
> hide #!502.17 models
> show #!513 models
> show #!514 models
> show #!459 models
> show #!458 models
> hide #!458 models
> show #!442 models
> show #!443 models
> show #!444 models
> show #!445 models
> show #!446 models
> show #!447 models
> show #!448 models
> show #!449 models
> show #!450 models
> show #!451 models
> show #!452 models
> hide #!452 models
> show #!115 models
> color #115 #bfa65cff models
> hide #!115 models
> show #!115 models
> color #115 #a6cb92ff models
> color #115 #a7cb92ff models
> color #115 #a8cb8dff models
> color #115 #a0c185ff models
> show #!16 models
> show #!312 models
> show #!313 models
> show #!316 models
> color #312 #929292ff models
> color #16 #929292ff models
> color #513-514 #929292ff models
> color $442-459 #b7916aff models
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #442-459 #b7916aff models
> save /Users/shoichitachiyama/Desktop/Side-view3.png supersample 2
> transparentBackground true
> save /Users/shoichitachiyama/Desktop/Must-use-this-for-RIP-models.cxs
> includeMaps true
——— End of log from Thu Oct 19 23:00:43 2023 ———
opened ChimeraX session
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Movie-Nov2023.cxs
> includeMaps true
> hide #!488 models
> show #!488 models
> select add #488
49824 atoms, 50886 bonds, 6048 residues, 19 models selected
> ui tool show "Color Actions"
Alignment identifier is 1
Alignment identifier is 2
> select #488.1/B:1-2 #488.2/B:1-2 #488.3/B:1-2 #488.4/B:1-2 #488.5/B:1-2
> #488.6/B:1-2 #488.7/B:1-2 #488.8/B:1-2 #488.9/B:1-2 #488.10/B:1-2
> #488.11/B:1-2 #488.12/B:1-2 #488.13/B:1-2 #488.14/B:1-2 #488.15/B:1-2
> #488.16/B:1-2 #488.17/B:1-2 #488.18/B:1-2
306 atoms, 288 bonds, 36 residues, 18 models selected
> select #488.1/B #488.2/B #488.3/B #488.4/B #488.5/B #488.6/B #488.7/B
> #488.8/B #488.9/B #488.10/B #488.11/B #488.12/B #488.13/B #488.14/B
> #488.15/B #488.16/B #488.17/B #488.18/B
26748 atoms, 27306 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 557.007
> color (#!488.3-15 & sel) #c4ffe2ff
> color (#!488.3-15 & sel) #c0ffe5ff
[Repeated 1 time(s)]
> color (#!488.3-15 & sel) #bdffdeff
> color (#!488.3-15 & sel) #bcffd8ff
> color (#!488.3-15 & sel) #baffd2ff
> color (#!488.3-15 & sel) #b9ffcdff
> color (#!488.3-15 & sel) #b8ffcbff
[Repeated 1 time(s)]
> color (#!488.3-15 & sel) #a9ffc3ff
> color (#!488.3-15 & sel) #a5ffc1ff
[Repeated 1 time(s)]
> color (#!488.3-15 & sel) #a4ffc0ff
> color (#!488.3-15 & sel) #98ffbbff
> color (#!488.3-15 & sel) #96ffbaff
[Repeated 1 time(s)]
> color (#!488.3-15 & sel) #95ffbaff
> color (#!488.3-15 & sel) #8cffb2ff
> color (#!488.3-15 & sel) #85ffacff
> color (#!488.3-15 & sel) #84ffacff
> color (#!488.3-15 & sel) #81ffa7ff
> color (#!488.3-15 & sel) #81ffa4ff
> color (#!488.3-15 & sel) #81ffa3ff
[Repeated 2 time(s)]
> color (#!488.3-15 & sel) #83ff9eff
[Repeated 2 time(s)]
> color (#!488.3-15 & sel) #84ff9eff
> color (#!488.3-15 & sel) #81ffa0ff
> color (#!488.3-15 & sel) #82ffa5ff
> color (#!488.3-15 & sel) #88ffabff
> color (#!488.3-15 & sel) #8dffb0ff
> color (#!488.3-15 & sel) #8effb1ff
> color (#!488.3-15 & sel) #93ffbbff
[Repeated 1 time(s)]
> color (#!488.3-15 & sel) #94ffbbff
> color (#!488.3-15 & sel) #96ffbeff
> color (#!488.3-15 & sel) #96ffbdff
> color (#!488.3-15 & sel) #90f4b5ff
> color (#!488.3-15 & sel) #8ff3b5ff
> color (#!488.3-15 & sel) #8deeb1ff
> color (#!488.3-15 & sel) #8aeaaeff
> color (#!488.3-15 & sel) #89e9adff
> color (#!488.3-15 & sel) #84dfa6ff
> color (#!488.3-15 & sel) #83dea5ff
> color (#!488.3-15 & sel) #80daa2ff
> color (#!488.3-15 & sel) #7fd8a1ff
> color (#!488.3-15 & sel) #7fd7a0ff
> color (#!488.3-15 & sel) #7ed69fff
> color (#!488.3-15 & sel) #78cb97ff
> color (#!488.3-15 & sel) #73c391ff
> color (#!488.3-15 & sel) #75c794ff
[Repeated 1 time(s)]
> color (#!488.3-15 & sel) #76c995ff
> color (#!488.3-15 & sel) #70c991ff
> color (#!488.3-15 & sel) #66c98eff
> color (#!488.3-15 & sel) #59c989ff
> color (#!488.3-15 & sel) #58c989ff
> color (#!488.3-15 & sel) #59c989ff
[Repeated 2 time(s)]
> color (#!488.3-15 & sel) #5ac98aff
> color (#!488.3-15 & sel) #5ccd8dff
> color (#!488.3-15 & sel) #5ed290ff
> color (#!488.3-15 & sel) #64e09aff
> color (#!488.3-15 & sel) #64df99ff
> color (#!488.3-15 & sel) #63df99ff
> color (#!488.3-15 & sel) #61da96ff
> select add #488
49824 atoms, 50886 bonds, 6048 residues, 37 models selected
> select subtract #488
36 models selected
> select add #486
49824 atoms, 50886 bonds, 6048 residues, 21 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #486.1/B:1-2 #486.2/B:1-2 #486.3/B:1-2 #486.4/B:1-2 #486.5/B:1-2
> #486.6/B:1-2 #486.7/B:1-2 #486.8/B:1-2 #486.9/B:1-2 #486.10/B:1-2
> #486.11/B:1-2 #486.12/B:1-2 #486.13/B:1-2 #486.14/B:1-2 #486.15/B:1-2
> #486.16/B:1-2 #486.17/B:1-2 #486.18/B:1-2
306 atoms, 288 bonds, 36 residues, 18 models selected
> select #486.1/B #486.2/B #486.3/B #486.4/B #486.5/B #486.6/B #486.7/B
> #486.8/B #486.9/B #486.10/B #486.11/B #486.12/B #486.13/B #486.14/B
> #486.15/B #486.16/B #486.17/B #486.18/B
26748 atoms, 27306 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 545.751
> select add #486
49824 atoms, 50886 bonds, 6048 residues, 39 models selected
> select subtract #486
36 models selected
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated-Nov2023.cxs
> includeMaps true
> show #!201 models
> show #!202 models
> show #!203 models
> show #!204 models
> show #!205 models
> show #!206 models
> show #!207 models
> show #!208 models
> show #!209 models
> rename #177-216 name HP_Cring id #177
> turn y 30 12 models #177 center #177
> lighting simple
> turn y 30 12 models #177#113#479 center #113
> view name temp1
> view orient
> turn x -90
> turn y -90
[Repeated 2 time(s)]
> turn y 30 12 models #177#113#479 center #113
> view name temp2
[Repeated 1 time(s)]
> turn y 30 12 models #177#113#479 center #113
[Repeated 2 time(s)]
> turn y 30 12 models #492 center #492
> hide #!492.3 models
> show #!492.3 models
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> lighting soft
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> show #!490 models
> hide #!490 models
> show #!493.2 models
> hide #!493.2 models
> show #!493.14 models
> hide #!177.1 models
> show #!177.1 models
> hide #!177.25 models
> hide #!177.26 models
> hide #!177.27 models
> hide #!177.28 models
> hide #!177.29 models
> hide #!177.24 models
> hide #!177.30 models
> hide #!177.31 models
> hide #!177.32 models
> save /Users/shoichi/Desktop/Hp-Model-side-update.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Movie-Nov2023.cxs
> includeMaps true
> show #!177.24 models
> show #!177.25 models
> show #!177.26 models
> show #!177.27 models
> show #!177.28 models
> show #!177.29 models
> show #!177.30 models
> show #!177.31 models
> show #!177.32 models
> rename #239-259 name Hp_FlgV id #259
> lighting simple
> urn y 30 12 model #177#113#259#479 center #113; turn y 30 12 model #492.3
> center #492.3; turn y 30 12 model #492.14 center #492.14;
Unknown command: urn y 30 12 model #177#113#259#479 center #113; turn y 30 12
model #492.3 center #492.3; turn y 30 12 model #492.14 center #492.14;
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #177#113#259#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y -30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y -30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y -30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y -30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y 30 12 models #492.14 center #492.14
> turn y 30 12 models #492.13 center #492.13
> turn y 30 12 models #492.12 center #492.12
> turn y 30 12 models #492.11 center #492.11
> turn y 30 12 models #492.10 center #492.10
> turn y 30 12 models #492.9 center #492.9
> turn y 30 12 models #492.8 center #492.8
> turn y 30 12 models #492.7 center #492.7
> turn y 30 12 models #492.6 center #492.6
> turn y 30 12 models #492.5 center #492.5
> turn y 30 12 models #492.4 center #492.4
> turn y 3 120 models #492 center #492
> turn y 3 120 models #492.3 center #492.3
> turn y -3 120 models #492.3 center #492.3
> turn y 30 12 models #177#113#479 center #113
> turn y -10 12 models #492.3 center #492.3
> turn y 30 12 models #177#113#479 center #113
> turn y -10 12 models #492.3 center #492.3
> turn y 30 12 models #177#113#479 center #113
> turn y -10 12 models #492.3 center #492.3
> turn y 30 12 models #177#113#479 center #113
> turn y -10 12 models #492.3 center #492.3
> turn y 30 12 models #177#113#479 center #113
> turn y -10 12 models #492.3 center #492.3
> view temp2
> turn y 30 12 models #177#113#479 center #113
> turn y -10 12 models #492.3 center #492.3
> view temp2
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> view temp2
> lighting soft
> view temp2
> movie record
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> movie stop
> movie encode quality high framerate 20 output /Users/shoichi/Desktop/Hp-
> motion.mov
Movie encoding failed because no images were recorded.
> view temp2
> movie record
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> movie encode quality high output /Users/shoichi/Desktop/Hp-motion.mov
Movie encoding failed because no images were recorded.
> view temp2
> movie record
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> movie stop
> movie encode quality high framerate 20 output /Users/shoichi/Desktop/Hp-
> motion.mov
Movie encoding failed because no images were recorded.
> view temp2
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> movie stop
Not currently recording
> movie encode quality high framerate 20 output /Users/shoichi/Desktop/Hp-
> motion.mov
Movie encoding failed because no images were recorded.
> view temp2
> movie record
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> movie encode quality high framerate 20 output
> /Users/shoichi/Desktop/Hp_motion.mov
Movie encoding failed because no images were recorded.
> view temp2
> movie record
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> view temp2
> movie record
Already recording a movie
> turn y -30 12 models #259 center #113
> turn y 30 12 models #177#113#479 center #113
> turn y 30 12 models #492.3 center #492.3
> turn y -10 12 models #492.14 center #492.14
> turn y -10 12 models #492.13 center #492.13
> turn y -10 12 models #492.12 center #492.12
> turn y -10 12 models #492.11 center #492.11
> turn y -10 12 models #492.10 center #492.10
> turn y -10 12 models #492.9 center #492.9
> turn y -10 12 models #492.8 center #492.8
> turn y -10 12 models #492.7 center #492.7
> turn y -10 12 models #492.6 center #492.6
> turn y -10 12 models #492.5 center #492.5
> turn y -10 12 models #492.4 center #492.4
> wait 12
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_motion.mov
Movie saved to /Users/shoichi/Desktop/Hp_motion.mov
> movie record
> turn y -3 120 models #259 center #113
> turn y 3 120 models #177#113#479 center #113
> turn y 3 120 models #492.3 center #492.3
> turn y -2 120 models #492.14 center #492.14
> turn y -2 120 models #492.13 center #492.13
> turn y -2 120 models #492.12 center #492.12
> turn y -2 120 models #492.11 center #492.11
> turn y -2 120 models #492.10 center #492.10
> turn y -2 120 models #492.9 center #492.9
> turn y -2 120 models #492.8 center #492.8
> turn y -2 120 models #492.7 center #492.7
> turn y -2 120 models #492.6 center #492.6
> turn y -2 120 models #492.5 center #492.5
> turn y -2 120 models #492.4 center #492.4
> wait 12
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_motion.mov
Movie saved to /Users/shoichi/Desktop/Hp_motion.mov
> view temp2
> movie record
> turn y -3 120 models #259 center #113
> turn y 3 120 models #177#113#479 center #113
> turn y 3 120 models #492.3 center #492.3
> turn y -2 120 models #492.14 center #492.14
> turn y -2 120 models #492.13 center #492.13
> turn y -2 120 models #492.12 center #492.12
> turn y -2 120 models #492.11 center #492.11
> turn y -2 120 models #492.10 center #492.10
> turn y -2 120 models #492.9 center #492.9
> turn y -2 120 models #492.8 center #492.8
> turn y -2 120 models #492.7 center #492.7
> turn y -2 120 models #492.6 center #492.6
> turn y -2 120 models #492.5 center #492.5
> turn y -2 120 models #492.4 center #492.4
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_motion.mov
Movie saved to /Users/shoichi/Desktop/Hp_motion.mov
> view temp2
> movie record
> turn y -3 120 models #259 center #113
> turn y 3 120 models #177#113#479 center #113
> turn y 3 120 models #492.3 center #492.3
> turn y -3 120 models #492.14 center #492.14
> turn y -3 120 models #492.13 center #492.13
> turn y -3 120 models #492.12 center #492.12
> turn y -3 120 models #492.11 center #492.11
> turn y -3 120 models #492.10 center #492.10
> turn y -3 120 models #492.9 center #492.9
> turn y -3 120 models #492.8 center #492.8
> turn y -3 120 models #492.7 center #492.7
> turn y -3 120 models #492.6 center #492.6
> turn y -3 120 models #492.5 center #492.5
> turn y -3 120 models #492.4 center #492.4
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_motion2.mov
Movie saved to /Users/shoichi/Desktop/Hp_motion2.mov
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Movie-Nov2023.cxs
> includeMaps true
> view temp2
[Repeated 1 time(s)]
> movie record
> turn y -3 120 models #259 center #113
> turn y 3 120 models #177#113#479 center #113
> turn y 3 120 models #492.3 center #492.3
> turn y -4 120 models #492.14 center #492.14
> turn y -4 120 models #492.13 center #492.13
> turn y -4 120 models #492.12 center #492.12
> turn y -4 120 models #492.11 center #492.11
> turn y -4 120 models #492.10 center #492.10
> turn y -4 120 models #492.9 center #492.9
> turn y -4 120 models #492.8 center #492.8
> turn y -4 120 models #492.7 center #492.7
> turn y -4 120 models #492.6 center #492.6
> turn y -4 120 models #492.5 center #492.5
> turn y -4 120 models #492.4 center #492.4
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_motion3.mov
Movie saved to /Users/shoichi/Desktop/Hp_motion3.mov
> view temp2
> set bgColor black
> set bgColor transparent
> movie record
> turn y -3 120 models #259 center #113
> turn y 3 120 models #177#113#479 center #113
> turn y 3 120 models #492.3 center #492.3
> turn y -4 120 models #492.14 center #492.14
> turn y -4 120 models #492.13 center #492.13
> turn y -4 120 models #492.12 center #492.12
> turn y -4 120 models #492.11 center #492.11
> turn y -4 120 models #492.10 center #492.10
> turn y -4 120 models #492.9 center #492.9
> turn y -4 120 models #492.8 center #492.8
> turn y -4 120 models #492.7 center #492.7
> turn y -4 120 models #492.6 center #492.6
> turn y -4 120 models #492.5 center #492.5
> turn y -4 120 models #492.4 center #492.4
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_motion3.mov
Movie saved to /Users/shoichi/Desktop/Hp_motion3.mov
> view temp2
> movie record
> turn y 3 120 models #259 center #113
> turn y 3 120 models #177#113#479 center #113
> turn y 3 120 models #492.3 center #492.3
> turn y -4 120 models #492.14 center #492.14
> turn y -4 120 models #492.13 center #492.13
> turn y -4 120 models #492.12 center #492.12
> turn y -4 120 models #492.11 center #492.11
> turn y -4 120 models #492.10 center #492.10
> turn y -4 120 models #492.9 center #492.9
> turn y -4 120 models #492.8 center #492.8
> turn y -4 120 models #492.7 center #492.7
> turn y -4 120 models #492.6 center #492.6
> turn y -4 120 models #492.5 center #492.5
> turn y -4 120 models #492.4 center #492.4
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_motion4.mov
Movie saved to /Users/shoichi/Desktop/Hp_motion4.mov
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Movie-Nov2023.cxs
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Movie-Nov2023.cxs
> includeMaps true
> turn x 90
> hide #!16 models
> show #!50.1 models
> show #!50.2 models
> show #!50.3 models
> show #!50.16 models
> show #!50.17 models
> show #!50.18 models
> hide #!115 models
> hide #!312 models
> hide #!313 models
> hide #!316 models
> hide #!442-459 models
> hide #!513 models
> hide #!514 models
> show #!492.1 models
> show #!492.2 models
> show #!492.15 models
> show #!492.16 models
> show #!492.17 models
> show #!492.18 models
> show #!493.18 models
> show #!493.17 models
> show #!493.16 models
> show #!493.15 models
> show #!493.1 models
> show #!493.2 models
> show #!488.1 models
> show #!488.2 models
> show #!488.16 models
> show #!488.17 models
> show #!488.18 models
> show #!486.3 models
> show #!486.2 models
> show #!486.1 models
> show #!486.16 models
> show #!486.17 models
> show #!486.18 models
> select add #486
49824 atoms, 50886 bonds, 6048 residues, 19 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #486.1/B:179 #486.2/B:179 #486.3/B:179 #486.4/B:179 #486.5/B:179
> #486.6/B:179 #486.7/B:179 #486.8/B:179 #486.9/B:179 #486.10/B:179
> #486.11/B:179 #486.12/B:179 #486.13/B:179 #486.14/B:179 #486.15/B:179
> #486.16/B:179 #486.17/B:179 #486.18/B:179
162 atoms, 144 bonds, 18 residues, 18 models selected
> select #486.1/B #486.2/B #486.3/B #486.4/B #486.5/B #486.6/B #486.7/B
> #486.8/B #486.9/B #486.10/B #486.11/B #486.12/B #486.13/B #486.14/B
> #486.15/B #486.16/B #486.17/B #486.18/B
26748 atoms, 27306 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 545.751
> color (#!486.1-18 & sel) #4bca96ff
> color (#!486.1-18 & sel) #61da96ff
> select add #486
49824 atoms, 50886 bonds, 6048 residues, 37 models selected
> select subtract #486
36 models selected
> select add #488
49824 atoms, 50886 bonds, 6048 residues, 19 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #488.1/B:179 #488.2/B:179 #488.3/B:179 #488.4/B:179 #488.5/B:179
> #488.6/B:179 #488.7/B:179 #488.8/B:179 #488.9/B:179 #488.10/B:179
> #488.11/B:179 #488.12/B:179 #488.13/B:179 #488.14/B:179 #488.15/B:179
> #488.16/B:179 #488.17/B:179 #488.18/B:179
162 atoms, 144 bonds, 18 residues, 18 models selected
> select #488.1/B #488.2/B #488.3/B #488.4/B #488.5/B #488.6/B #488.7/B
> #488.8/B #488.9/B #488.10/B #488.11/B #488.12/B #488.13/B #488.14/B
> #488.15/B #488.16/B #488.17/B #488.18/B
26748 atoms, 27306 bonds, 3222 residues, 18 models selected
2 [ID: 2] region 18 chains [1-179] RMSD: 557.007
> color (#!488.1-18 & sel) #4bca96ff
> color (#!488.1-18 & sel) #61da96ff
> select add #488
49824 atoms, 50886 bonds, 6048 residues, 37 models selected
> select subtract #488
36 models selected
> show #!494.1 models
> show #!494.2 models
> show #!494.16 models
> show #!494.15 models
> show #!494.17 models
> show #!494.18 models
> show #!504.1 models
> show #!504.13 models
> show #!504.12 models
> show #!504.11 models
> show #!504.10 models
> show #!501.1 models
> show #!501.2 models
> show #!501.3 models
> show #!501.16 models
> show #!501.18 models
> show #!501.17 models
> ui tool show "Side View"
> save /Users/shoichi/Desktop/Top-view-model-Nov2023.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated2-Nov2023.cxs
> includeMaps true
——— End of log from Thu Nov 2 12:56:02 2023 ———
opened ChimeraX session
> hide #!479 models
> show #!479 models
> hide #!481 models
> show #!481 models
> hide #!486 models
> hide #!488 models
> hide #!494 models
> hide #!493 models
> hide #!492 models
> hide #!501 models
> hide #!502 models
> hide #!504 models
> hide #!50 models
> ui tool show "Side View"
> open /Users/shoichi/Desktop/7cgb.cif
7cgb.cif title:
Cryo-EM structure of the flagellar hook from Salmonella [more info...]
Chain information for 7cgb.cif #52
---
Chain | Description | UniProt
DL DM DN DO DP DQ DR DS DT DU DV DW DX DY DZ EA EB EC ED EE EF EG | Flagellar hook protein FlgE | FLGE_SALTY 1-403
> select add #52
64834 atoms, 65802 bonds, 8822 residues, 1 model selected
> lighting soft
> lighting simple
> hide sel atoms
> hide sel surfaces
> show sel surfaces
> ui mousemode right "rotate selected models"
> view matrix models
> #52,-0.89201,-0.45194,0.0088545,779.34,-0.44189,0.87596,0.19347,159.23,-0.095194,0.16867,-0.98107,265.03
> ui mousemode right "translate selected models"
> view matrix models
> #52,-0.89201,-0.45194,0.0088545,758.06,-0.44189,0.87596,0.19347,137.85,-0.095194,0.16867,-0.98107,844.72
> view matrix models
> #52,-0.89201,-0.45194,0.0088545,931.96,-0.44189,0.87596,0.19347,286.05,-0.095194,0.16867,-0.98107,848.83
> color #113 #9292927d models
> view matrix models
> #52,-0.89201,-0.45194,0.0088545,941.65,-0.44189,0.87596,0.19347,346.85,-0.095194,0.16867,-0.98107,928.89
> view matrix models
> #52,-0.89201,-0.45194,0.0088545,981.03,-0.44189,0.87596,0.19347,353.12,-0.095194,0.16867,-0.98107,929.12
> view matrix models
> #52,-0.89201,-0.45194,0.0088545,977.94,-0.44189,0.87596,0.19347,358.15,-0.095194,0.16867,-0.98107,911.11
> open /Users/shoichi/Desktop/7e80-pdb-bundle/7e80-pdb-bundle1.pdb
Summary of feedback from opening /Users/shoichi/Desktop/7e80-pdb-
bundle/7e80-pdb-bundle1.pdb
---
warning | Ignored bad PDB record found on line 1
HEADER MOTOR PROTEIN 2021-02-28 XXXX
Chain information for 7e80-pdb-bundle1.pdb #53
---
Chain | Description
0 1 2 | No description available
3 | No description available
4 5 6 7 8 9 | No description available
A B C D E F G H I J K M | No description available
L U v w x | No description available
N | No description available
O | No description available
P | No description available
Q S | No description available
R | No description available
T | No description available
V X Y Z | No description available
W | No description available
a b c d e | No description available
f g h i r | No description available
j | No description available
k | No description available
l | No description available
m | No description available
n o | No description available
p | No description available
q | No description available
s | No description available
t | No description available
u | No description available
y | No description available
z | No description available
> open /Users/shoichi/Desktop/7e80-pdb-bundle/7e80-pdb-bundle2.pdb
Summary of feedback from opening /Users/shoichi/Desktop/7e80-pdb-
bundle/7e80-pdb-bundle2.pdb
---
warning | Ignored bad PDB record found on line 1
HEADER MOTOR PROTEIN 2021-02-28 XXXX
Chain information for 7e80-pdb-bundle2.pdb #60
---
Chain | Description
A B C D E | No description available
F | No description available
G H I J | No description available
K L M N O | No description available
> close #52
> hide #!53 models
> show #!53 models
> close #60
> close #53
> open /Users/shoichi/Desktop/7cgb.cif
7cgb.cif title:
Cryo-EM structure of the flagellar hook from Salmonella [more info...]
Chain information for 7cgb.cif #52
---
Chain | Description | UniProt
DL DM DN DO DP DQ DR DS DT DU DV DW DX DY DZ EA EB EC ED EE EF EG | Flagellar hook protein FlgE | FLGE_SALTY 1-403
> select add #52
64834 atoms, 65802 bonds, 8822 residues, 1 model selected
> select subtract #52
Nothing selected
> close #52
> open /Users/shoichi/Desktop/7e80.cif
7e80.cif title:
Cryo-EM structure of the flagellar rod with hook and export apparatus from
Salmonella [more info...]
Chain information for 7e80.cif #52
---
Chain | Description | UniProt
0 1 2 3 4 | Flagellar MS ring L2 |
5 6 7 8 9 | Flagellar MS ring L1 | FLIF_SALTY 311-331
A B C D E F G H I J K L M N O P Q R S T U V W X | Flagellar basal-body rod protein FlgG | FLGG_SALTY 1-260
CA CB CC CD | Flagellar biosynthetic protein FliQ | FLIQ_SALTY 1-89
CE | Flagellar biosynthetic protein FliR | FLIR_SALTY 1-264
CF w x y z | Flagellar biosynthetic protein FliP | FLIP_SALTY 1-245
DA DB DC DD DE DF DG DH DI DJ DK | Flagellar hook protein FlgE | FLGE_SALTY 1-403
a b c d e | Flagellar basal-body rod protein FlgF | FLGF_SALTY 1-251
f g h i j p | Flagellar basal-body rod protein FlgC | FLGC_SALTY 1-134
k l m n o | Flagellar basal body rod protein FlgB | FLGB_SALTY 1-138
q r s t u v | Flagellar hook-basal body complex protein FliE | FLIE_SALTY 1-104
> select add #52
114468 atoms, 116060 bonds, 18 pseudobonds, 15371 residues, 2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #52,-0.19252,-0.92528,-0.3268,812.82,-0.95105,0.25798,-0.17016,618.82,0.24175,0.27804,-0.92965,484.29
> view matrix models
> #52,-0.23404,-0.96847,-0.085447,758.77,-0.97193,0.23524,-0.0041279,576.78,0.024098,0.082082,-0.99633,644.14
> view matrix models
> #52,-0.23884,-0.97047,-0.033707,743.41,-0.9706,0.23752,0.038995,560.9,-0.029838,0.04203,-0.99867,676.06
> ui mousemode right "translate selected models"
> view matrix models
> #52,-0.23884,-0.97047,-0.033707,938.43,-0.9706,0.23752,0.038995,765.97,-0.029838,0.04203,-0.99867,657.98
> view matrix models
> #52,-0.23884,-0.97047,-0.033707,973.6,-0.9706,0.23752,0.038995,793.7,-0.029838,0.04203,-0.99867,980.13
> show #!115 models
> hide #!115 models
> view matrix models
> #52,-0.23884,-0.97047,-0.033707,969.46,-0.9706,0.23752,0.038995,789.31,-0.029838,0.04203,-0.99867,935.36
> view matrix models
> #52,-0.23884,-0.97047,-0.033707,952.48,-0.9706,0.23752,0.038995,774.52,-0.029838,0.04203,-0.99867,937.37
> view matrix models
> #52,-0.23884,-0.97047,-0.033707,955.43,-0.9706,0.23752,0.038995,772.16,-0.029838,0.04203,-0.99867,935.5
> ui tool show "Fit in Map"
> fitmap #52 inMap #113
Fit molecule 7e80.cif (#52) to map Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
using 114468 atoms
average map value = 0.05306, steps = 68
shifted from previous position = 11.6
rotated from previous position = 2.26 degrees
atoms outside contour = 28989, contour level = 0.01507
Position of 7e80.cif (#52) relative to Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
coordinates:
Matrix rotation and translation
-0.27471977 -0.96150595 0.00593950 927.00098333
-0.96100992 0.27476959 0.03100821 735.67590906
-0.03144658 0.00281065 -0.99950143 936.59621959
Axis -0.60212353 0.79833268 0.01059199
Axis point 747.79906152 0.00000000 456.44710179
Rotation angle (degrees) 178.65829093
Shift along axis 39.06543451
> fitmap #52 inMap #113
Fit molecule 7e80.cif (#52) to map Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
using 114468 atoms
average map value = 0.05306, steps = 28
shifted from previous position = 0.0882
rotated from previous position = 0.296 degrees
atoms outside contour = 28981, contour level = 0.01507
Position of 7e80.cif (#52) relative to Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
coordinates:
Matrix rotation and translation
-0.27967883 -0.96007352 0.00620562 928.16842865
-0.95958165 0.27973490 0.03084378 733.60170117
-0.03134823 0.00267155 -0.99950490 936.66048330
Axis -0.60006035 0.79988613 0.01047654
Axis point 746.12170427 0.00000000 456.54070210
Rotation angle (degrees) 178.65488672
Shift along axis 39.65371461
> fitmap #52 inMap #113
Fit molecule 7e80.cif (#52) to map Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
using 114468 atoms
average map value = 0.05306, steps = 24
shifted from previous position = 0.00554
rotated from previous position = 0.141 degrees
atoms outside contour = 28978, contour level = 0.01507
Position of 7e80.cif (#52) relative to Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
coordinates:
Matrix rotation and translation
-0.27733117 -0.96075419 0.00622279 927.61039180
-0.96025577 0.27738843 0.03105506 734.55094217
-0.03156241 0.00263707 -0.99949826 936.74181807
Axis -0.60103674 0.79915187 0.01054151
Axis point 746.95626815 0.00000000 456.49003726
Rotation angle (degrees) 178.64535502
Shift along axis 39.36449878
> color #113 #929292ff models
> color #52 #929292ff
> select subtract #52
Nothing selected
> hide #!113 models
> show #!113 models
> hide #!113 models
> show #!113 models
> view temp2
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-seminar/2023/RIP_2023/PDB/7cbl.pdb
7cbl.pdb title:
Cryo-em structure of the flagellar LP ring from salmonella [more info...]
Chain information for 7cbl.pdb #53
---
Chain | Description | UniProt
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | basal BODY L-RING protein | FLGH_SALTY 1-232
a b c d e f g h i j k l m n o p q r s t u v w x y z | basal BODY P-RING protein | FLGI_SALTY 1-365
Non-standard residues in 7cbl.pdb #53
---
OCA — octanoic acid (caprylic acid)
> show #!115 models
> select add #53
99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected
> view matrix models #53,1,0,0,1.5928e-14,0,1,0,47.823,0,0,1,318.71
> ui mousemode right "rotate selected models"
> view matrix models
> #53,-0.40335,0.90994,0.096542,135.62,0.91222,0.40815,-0.03569,-48.976,-0.07188,0.073672,-0.99469,964.16
> ui mousemode right "translate selected models"
> view matrix models
> #53,-0.40335,0.90994,0.096542,360.17,0.91222,0.40815,-0.03569,56.701,-0.07188,0.073672,-0.99469,960.63
> color #115 #a0c18579 models
> view matrix models
> #53,-0.40335,0.90994,0.096542,337.76,0.91222,0.40815,-0.03569,92.462,-0.07188,0.073672,-0.99469,963.19
> view matrix models
> #53,-0.40335,0.90994,0.096542,340.69,0.91222,0.40815,-0.03569,94.958,-0.07188,0.073672,-0.99469,960.34
> fitmap #53 inMap #115
Fit molecule 7cbl.pdb (#53) to map Hpwt-L0.08-Global-PL.mrc (#115) using 99242
atoms
average map value = 0.0906, steps = 56
shifted from previous position = 13.1
rotated from previous position = 6.11 degrees
atoms outside contour = 13981, contour level = 0.014815
Position of 7cbl.pdb (#53) relative to Hpwt-L0.08-Global-PL.mrc (#115)
coordinates:
Matrix rotation and translation
-0.36889239 0.92946546 -0.00350780 329.64013091
0.92947036 0.36889635 0.00053537 79.84187768
0.00179163 -0.00306290 -0.99999369 945.49701379
Axis -0.56173986 -0.82731357 0.00076489
Axis point 136.79877266 0.00000000 472.96826074
Rotation angle (degrees) 179.81649315
Shift along axis -250.50307238
> fitmap #53 inMap #115
Fit molecule 7cbl.pdb (#53) to map Hpwt-L0.08-Global-PL.mrc (#115) using 99242
atoms
average map value = 0.0906, steps = 40
shifted from previous position = 0.0289
rotated from previous position = 0.0492 degrees
atoms outside contour = 13979, contour level = 0.014815
Position of 7cbl.pdb (#53) relative to Hpwt-L0.08-Global-PL.mrc (#115)
coordinates:
Matrix rotation and translation
-0.36934345 0.92928661 -0.00343110 329.82686365
0.92929229 0.36934506 -0.00017155 79.97826278
0.00110784 -0.00325185 -0.99999408 945.81647770
Axis -0.56153944 -0.82744932 0.00103562
Axis point 136.99125744 0.00000000 473.11508348
Rotation angle (degrees) 179.84285276
Shift along axis -250.40924640
> fitmap #53 inMap #115
Fit molecule 7cbl.pdb (#53) to map Hpwt-L0.08-Global-PL.mrc (#115) using 99242
atoms
average map value = 0.0906, steps = 40
shifted from previous position = 0.0557
rotated from previous position = 0.0532 degrees
atoms outside contour = 13961, contour level = 0.014815
Position of 7cbl.pdb (#53) relative to Hpwt-L0.08-Global-PL.mrc (#115)
coordinates:
Matrix rotation and translation
-0.37020579 0.92894339 -0.00343469 330.23183629
0.92894911 0.37020734 -0.00019647 79.80926383
0.00108904 -0.00326338 -0.99999406 945.88216826
Axis -0.56115540 -0.82770981 0.00104631
Axis point 137.28118906 0.00000000 473.14812558
Rotation angle (degrees) 179.84342875
Shift along axis -250.38060392
> color #115 #a0c185ff models
> color #53 #a0c185ff
> select subtract #53
Nothing selected
> hide #!115 models
> hide #!113 models
> show #!113 models
> hide #!113 models
> turn y -30 12 models #52 center #52
[Repeated 1 time(s)]
> turn y -3 120 models #52 center #52
> turn x 90
> turn y -3 120 models #52 center #113
> show #!113 models
> hide #!113 models
> view temp2
> show #!113 models
> color #113 #9292925d models
> fitmap #52 inMap #113
Fit molecule 7e80.cif (#52) to map Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
using 114468 atoms
average map value = 0.05306, steps = 24
shifted from previous position = 0.00107
rotated from previous position = 0.0956 degrees
atoms outside contour = 28976, contour level = 0.01507
Position of 7e80.cif (#52) relative to Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
coordinates:
Matrix rotation and translation
-0.27572892 -0.96121549 0.00617822 927.24373651
-0.96071673 0.27578556 0.03107266 735.23631910
-0.03157139 0.00263211 -0.99949799 936.74598855
Axis -0.60170297 0.79865023 0.01055208
Axis point 747.51321595 0.00000000 456.48093067
Rotation angle (degrees) 178.64578119
Shift along axis 39.15596046
> fitmap #52 inMap #113
Fit molecule 7e80.cif (#52) to map Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
using 114468 atoms
average map value = 0.05306, steps = 24
shifted from previous position = 0.000989
rotated from previous position = 0.0875 degrees
atoms outside contour = 28970, contour level = 0.01507
Position of 7e80.cif (#52) relative to Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
coordinates:
Matrix rotation and translation
-0.27426070 -0.96163568 0.00614061 926.90535398
-0.96113650 0.27431687 0.03109184 735.86340775
-0.03158350 0.00262530 -0.99949763 936.75141859
Axis -0.60231279 0.79819029 0.01056204
Axis point 748.02443109 0.00000000 456.47193266
Rotation angle (degrees) 178.64591576
Shift along axis 38.96608612
> fitmap #52 inMap #113
Fit molecule 7e80.cif (#52) to map Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
using 114468 atoms
average map value = 0.05306, steps = 24
shifted from previous position = 0.000901
rotated from previous position = 0.0798 degrees
atoms outside contour = 28972, contour level = 0.01507
Position of 7e80.cif (#52) relative to Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
coordinates:
Matrix rotation and translation
-0.27292092 -0.96201700 0.00610695 926.59569515
-0.96151743 0.27297667 0.03110939 736.43467581
-0.03159482 0.00261846 -0.99949729 936.75657333
Axis -0.60286872 0.79777037 0.01057096
Axis point 748.49123094 0.00000000 456.46372069
Rotation angle (degrees) 178.64600543
Shift along axis 38.79261111
> view temp2
> view name temp2
> turn y -3 120 models #52 center #113
> view temp2
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-
> seminar/2023/RIP_2023/PDB/0838_alfold_12232021.pdb
Chain information for 0838_alfold_12232021.pdb #60
---
Chain | Description
A | No description available
> close #60
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-
> seminar/2023/RIP_2023/PDB/0838-without-signal.pdb
Chain information for 0838-without-signal.pdb #60
---
Chain | Description
A | No description available
> select add #60
3109 atoms, 3138 bonds, 186 residues, 1 model selected
> view matrix models #60,1,0,0,9.3623e-14,0,1,0,281.1,0,0,1,500.42
> view matrix models #60,1,0,0,1.2931e-13,0,1,0,388.23,0,0,1,770.35
> show #!514 models
> show #!513 models
> show #!16 models
> ui mousemode right "rotate selected models"
> view matrix models
> #60,-0.94685,0.20074,-0.25134,20.003,0.050669,0.8647,0.49973,392.6,0.31765,0.46043,-0.82891,748.54
> view matrix models
> #60,-0.070862,0.53539,-0.84163,5.0009,0.13156,0.84139,0.52417,391.86,0.98877,-0.073584,-0.13006,746.48
> ui mousemode right "translate selected models"
> view matrix models
> #60,-0.070862,0.53539,-0.84163,538.43,0.13156,0.84139,0.52417,401.98,0.98877,-0.073584,-0.13006,846.12
> color #513 #92929270 models
> color #513 #929292c5 models
> color #513 #929292ff models
> color #514 #9292927f models
> ui mousemode right "rotate selected models"
> view matrix models
> #60,-0.66217,0.53143,-0.52831,548.53,0.098998,0.76088,0.6413,403.3,0.74279,0.37234,-0.55644,846.02
> view matrix models
> #60,-0.68199,0.15788,-0.71411,545.19,-0.21036,0.89281,0.39829,404.66,0.70045,0.42186,-0.57568,846.49
> view matrix models
> #60,-0.67865,0.1295,-0.72296,544.94,-0.2346,0.89455,0.38045,404.74,0.69599,0.4278,-0.5767,846.55
> view matrix models
> #60,-0.61709,0.28675,-0.73279,544.78,-0.53477,0.53033,0.65786,409.69,0.57725,0.79783,-0.17392,853.82
> view matrix models
> #60,-0.64634,0.24699,-0.72197,545.06,-0.54082,0.51918,0.66179,409.76,0.53829,0.8182,-0.20199,854.03
> view matrix models
> #60,-0.53791,0.1439,-0.83063,542.23,-0.65487,0.54913,0.51923,409.6,0.53084,0.82326,-0.20115,854.15
> view matrix models
> #60,-0.61165,0.023782,-0.79077,543.01,-0.66968,0.5166,0.53352,409.79,0.4212,0.8559,-0.30005,854.43
> ui mousemode right "translate selected models"
> view matrix models
> #60,-0.61165,0.023782,-0.79077,546.73,-0.66968,0.5166,0.53352,395.09,0.4212,0.8559,-0.30005,814.47
> view matrix models
> #60,-0.61165,0.023782,-0.79077,551.88,-0.66968,0.5166,0.53352,395.62,0.4212,0.8559,-0.30005,806.21
> view matrix models
> #60,-0.61165,0.023782,-0.79077,552.16,-0.66968,0.5166,0.53352,395.38,0.4212,0.8559,-0.30005,811
> show #!316 models
> view matrix models
> #60,-0.61165,0.023782,-0.79077,551.76,-0.66968,0.5166,0.53352,396.57,0.4212,0.8559,-0.30005,808.57
> ui mousemode right "rotate selected models"
> view matrix models
> #60,-0.62075,-0.0067921,-0.78398,551.81,-0.60852,0.63467,0.47633,395.73,0.49433,0.77275,-0.39811,806.33
> ui mousemode right "translate selected models"
> view matrix models
> #60,-0.62075,-0.0067921,-0.78398,551.93,-0.60852,0.63467,0.47633,395.94,0.49433,0.77275,-0.39811,809.09
> view matrix models
> #60,-0.62075,-0.0067921,-0.78398,551.81,-0.60852,0.63467,0.47633,396.91,0.49433,0.77275,-0.39811,810.65
> ui mousemode right "rotate selected models"
> view matrix models
> #60,-0.70352,-0.21964,-0.67588,553.06,-0.64066,0.60765,0.46939,397.09,0.3076,0.76323,-0.56821,810.84
> view matrix models
> #60,-0.70071,-0.22505,-0.67702,553,-0.62861,0.64356,0.43668,396.74,0.33742,0.73156,-0.59242,810.11
> ui mousemode right "translate selected models"
> view matrix models
> #60,-0.70071,-0.22505,-0.67702,553.03,-0.62861,0.64356,0.43668,395.92,0.33742,0.73156,-0.59242,812.93
> select subtract #60
Nothing selected
> select add #60
3109 atoms, 3138 bonds, 186 residues, 1 model selected
> view matrix models
> #60,-0.70071,-0.22505,-0.67702,553.17,-0.62861,0.64356,0.43668,393.09,0.33742,0.73156,-0.59242,808
> ui mousemode right "rotate selected models"
> view matrix models
> #60,-0.70111,-0.23172,-0.67435,553.18,-0.62101,0.66318,0.41778,392.87,0.35041,0.71169,-0.60886,807.59
> view matrix models
> #60,-0.70023,-0.21102,-0.68202,553.17,-0.64317,0.60109,0.47437,393.49,0.30985,0.77082,-0.55662,808.86
> ui mousemode right "translate selected models"
> view matrix models
> #60,-0.70023,-0.21102,-0.68202,552.53,-0.64317,0.60109,0.47437,396.25,0.30985,0.77082,-0.55662,808.84
> select subtract #60
Nothing selected
> sym #60 C18 copies true center #113
Made 18 copies for 0838-without-signal.pdb symmetry C18
> hide #61.18 models
> show #61.18 models
> hide #61.17 models
> hide #61.16 models
> hide #61.15 models
> hide #61.14 models
> hide #61.13 models
> hide #61.12 models
> view temp2
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-seminar/2023/RIP_2023/C-ring-from-
> Seven/C-ring.pdb
Chain information for C-ring.pdb
---
Chain | Description
62.2/A | No description available
62.1/C | No description available
62.1/E | No description available
62.1/F | No description available
62.1/G 62.1/H | No description available
62.1/I | No description available
62.1/J | No description available
> select add #62
6683 atoms, 6740 bonds, 855 residues, 3 models selected
> view matrix models #62,1,0,0,-6.3963e-14,0,1,0,-192.04,0,0,1,-97.774
> hide sel surfaces
> hide sel atoms
[Repeated 1 time(s)]
> hide sel surfaces
> show sel cartoons
> view matrix models #62,1,0,0,-8.0834e-14,0,1,0,-242.7,0,0,1,-165.31
> view matrix models #62,1,0,0,-0.14107,0,1,0,-243.55,0,0,1,-129.82
> hide #!177 models
> hide #!177.1 models
> hide #!177.2 models
> hide #!177.3 models
> hide #!177.4 models
> hide #!177.6 models
> hide #!177.5 models
> show #!177 models
> hide #!177.7 models
> hide #!177.9 models
> hide #!177.8 models
> hide #!177.10 models
> hide #!177.12 models
> hide #!177.11 models
> hide #!177.13 models
> hide #!177.14 models
> hide #!177.16 models
> hide #!177.17 models
> hide #!177.15 models
> hide #!177.18 models
> hide #!177.19 models
> hide #!177.20 models
> hide #!177.21 models
> hide #!177.22 models
> hide #!177.24 models
> hide #!177.25 models
> hide #!177.23 models
> hide #!177.26 models
> hide #!177.27 models
> hide #!177.28 models
> hide #!177.40 models
> hide #!177.39 models
> hide #!177.38 models
> hide #!177.37 models
> hide #!177.36 models
> hide #!177.34 models
> hide #!177.32 models
> hide #!177.33 models
> hide #!177.31 models
> hide #!177.30 models
> hide #!177.29 models
> view matrix models #62,1,0,0,-18.917,0,1,0,-132.98,0,0,1,-269.38
> view matrix models #62,1,0,0,-19.709,0,1,0,-131.99,0,0,1,-267.12
> select subtract #62.2
6338 atoms, 6395 bonds, 812 residues, 2 models selected
> select add #62.2
6683 atoms, 6740 bonds, 855 residues, 3 models selected
> hide #62.2 models
> show #62.2 models
> hide #62.1 models
> show #62.1 models
Alignment identifier is 62.1/E
Alignment identifier is 62.1/F
Alignment identifier is 1
Alignment identifier is 62.1/I
Alignment identifier is 62.1/C
Alignment identifier is 62.1/J
Alignment identifier is 62.2/A
> select #62.1/C:329
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #62.1/C
2484 atoms, 2506 bonds, 318 residues, 1 model selected
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/ChainC format fasta
> alignment 62.1/C
> select add #62
6683 atoms, 6740 bonds, 855 residues, 3 models selected
> select subtract #62
Nothing selected
> select add #62
6683 atoms, 6740 bonds, 855 residues, 3 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #62,0.51666,0.8219,0.23986,-259.3,0.83443,-0.54613,0.073995,72.31,0.19181,0.16192,-0.96798,630.35
> view matrix models
> #62,-0.42392,-0.89846,0.11427,1007.1,-0.89727,0.39945,-0.18799,668.25,0.12326,-0.18222,-0.9755,814.76
> ui mousemode right "translate selected models"
> view matrix models
> #62,-0.42392,-0.89846,0.11427,973.44,-0.89727,0.39945,-0.18799,684.45,0.12326,-0.18222,-0.9755,812.36
> view matrix models
> #62,-0.42392,-0.89846,0.11427,979.3,-0.89727,0.39945,-0.18799,693.71,0.12326,-0.18222,-0.9755,812.72
> view matrix models
> #62,-0.42392,-0.89846,0.11427,972.73,-0.89727,0.39945,-0.18799,696.12,0.12326,-0.18222,-0.9755,811.84
> select subtract #62.2
6338 atoms, 6395 bonds, 812 residues, 2 models selected
> select subtract #62.1
1 model selected
> rename #62.1-62.2 name BbCring id #62
> select add #62
6683 atoms, 6740 bonds, 855 residues, 3 models selected
Alignment identifier is 62.1/E
Alignment identifier is 62.1/F
Alignment identifier is 1
Alignment identifier is 62.1/I
Alignment identifier is 62.1/C
Alignment identifier is 62.1/J
Alignment identifier is 62.2/A
> select #62.2/A:43
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #62.2/A
345 atoms, 345 bonds, 43 residues, 1 model selected
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/ChaonA format aln alignment
> 62.2/A
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/ChaonA format fasta
> alignment 62.2/A
> select subtract #62.2
Nothing selected
> select add #62.2
345 atoms, 345 bonds, 43 residues, 1 model selected
> hide #62.2 models
> fitmap #62.1 inMap #177.35
Fit molecule C-ring.pdb (#62.1) to map HP_C-ring_monomer.mrc copy gaussian
(#177.35) using 6338 atoms
average map value = 0.04914, steps = 84
shifted from previous position = 2.55
rotated from previous position = 16.1 degrees
atoms outside contour = 2788, contour level = 0.04
Position of C-ring.pdb (#62.1) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.35) coordinates:
Matrix rotation and translation
0.92863112 -0.37075043 0.01372467 -277.85583030
0.36296649 0.91554894 0.17327855 -775.10749343
-0.07680871 -0.15593026 0.98477722 -251.56979227
Axis -0.40679809 0.11187065 0.90664231
Axis point 1768.21708887 -1311.20243491 0.00000000
Rotation angle (degrees) 23.86820470
Shift along axis -201.76437356
> fitmap #62.1 inMap #177.35
Fit molecule C-ring.pdb (#62.1) to map HP_C-ring_monomer.mrc copy gaussian
(#177.35) using 6338 atoms
average map value = 0.04914, steps = 40
shifted from previous position = 0.052
rotated from previous position = 0.263 degrees
atoms outside contour = 2781, contour level = 0.04
Position of C-ring.pdb (#62.1) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.35) coordinates:
Matrix rotation and translation
0.93026338 -0.36660054 0.01463159 -280.95507283
0.35877936 0.91730910 0.17268870 -773.43207079
-0.07672947 -0.15539646 0.98486777 -251.90623995
Axis -0.40941527 0.11400886 0.90519673
Axis point 1785.12408419 -1330.62518815 0.00000000
Rotation angle (degrees) 23.62040039
Shift along axis -201.17551354
> fitmap #62.1 inMap #177.35
Fit molecule C-ring.pdb (#62.1) to map HP_C-ring_monomer.mrc copy gaussian
(#177.35) using 6338 atoms
average map value = 0.04914, steps = 28
shifted from previous position = 0.0728
rotated from previous position = 0.0314 degrees
atoms outside contour = 2782, contour level = 0.04
Position of C-ring.pdb (#62.1) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.35) coordinates:
Matrix rotation and translation
0.93006776 -0.36709825 0.01458899 -280.57510688
0.35928506 0.91713117 0.17258234 -773.59300595
-0.07673469 -0.15527166 0.98488705 -251.93561738
Axis -0.40871388 0.11384718 0.90553398
Axis point 1782.90758312 -1328.32842651 0.00000000
Rotation angle (degrees) 23.64571788
Shift along axis -201.53270273
> select add #62
6683 atoms, 6740 bonds, 855 residues, 3 models selected
> fitmap #62.1 inMap #177.35
Fit molecule C-ring.pdb (#62.1) to map HP_C-ring_monomer.mrc copy gaussian
(#177.35) using 6338 atoms
average map value = 0.04914, steps = 40
shifted from previous position = 0.0968
rotated from previous position = 0.153 degrees
atoms outside contour = 2781, contour level = 0.04
Position of C-ring.pdb (#62.1) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.35) coordinates:
Matrix rotation and translation
0.93104008 -0.36463822 0.01425963 -282.00676072
0.35693306 0.91810393 0.17229032 -772.64016176
-0.07591546 -0.15531946 0.98494300 -252.37979598
Axis -0.41075768 0.11306167 0.90470724
Axis point 1794.39459209 -1337.86780000 0.00000000
Rotation angle (degrees) 23.50238032
Shift along axis -199.84937037
> fitmap #62.1 inMap #177.35
Fit molecule C-ring.pdb (#62.1) to map HP_C-ring_monomer.mrc copy gaussian
(#177.35) using 6338 atoms
average map value = 0.04914, steps = 44
shifted from previous position = 0.0961
rotated from previous position = 0.12 degrees
atoms outside contour = 2780, contour level = 0.04
Position of C-ring.pdb (#62.1) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.35) coordinates:
Matrix rotation and translation
0.93034250 -0.36637788 0.01516834 -281.32563277
0.35849226 0.91745961 0.17248527 -773.27413434
-0.07711113 -0.15503265 0.98489530 -251.86101099
Axis -0.40900769 0.11523954 0.90522514
Axis point 1785.19997523 -1332.81362130 0.00000000
Rotation angle (degrees) 23.60200699
Shift along axis -202.03832602
> fitmap #62.1 inMap #177.35
Fit molecule C-ring.pdb (#62.1) to map HP_C-ring_monomer.mrc copy gaussian
(#177.35) using 6338 atoms
average map value = 0.04914, steps = 40
shifted from previous position = 0.0637
rotated from previous position = 0.104 degrees
atoms outside contour = 2775, contour level = 0.04
Position of C-ring.pdb (#62.1) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.35) coordinates:
Matrix rotation and translation
0.93098729 -0.36475448 0.01472526 -282.15657878
0.35698273 0.91810249 0.17219507 -772.63612899
-0.07632822 -0.15505476 0.98495280 -252.29244613
Axis -0.41025382 0.11414837 0.90479940
Axis point 1793.08483160 -1338.55972236 0.00000000
Rotation angle (degrees) 23.50557179
Shift along axis -200.71339528
> fitmap #62.1 inMap #177.35
Fit molecule C-ring.pdb (#62.1) to map HP_C-ring_monomer.mrc copy gaussian
(#177.35) using 6338 atoms
average map value = 0.04914, steps = 44
shifted from previous position = 0.0182
rotated from previous position = 0.0482 degrees
atoms outside contour = 2782, contour level = 0.04
Position of C-ring.pdb (#62.1) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.35) coordinates:
Matrix rotation and translation
0.93071034 -0.36547302 0.01441295 -281.55639174
0.35772857 0.91778488 0.17234029 -772.93570813
-0.07621371 -0.15524297 0.98493202 -252.25780719
Axis -0.40994549 0.11341236 0.90503168
Axis point 1790.33718755 -1334.75872413 0.00000000
Rotation angle (degrees) 23.54973138
Shift along axis -200.53899536
> sym #62 C39 copies true center #113
Made 39 copies for C-ring.pdb, C-ring.pdb symmetry C39
> view temp2
> hide #!177 models
> view name temp3
> hide #!62 models
> select subtract #62
Nothing selected
> select add #62.1
6338 atoms, 6395 bonds, 812 residues, 1 model selected
> select subtract #62.1
Nothing selected
> select add #62
6683 atoms, 6740 bonds, 855 residues, 3 models selected
> select subtract #62
Nothing selected
> color #63 #a0c185ff models
> color #63 #929292ff models
> hide #61.18 models
> hide #61.11 models
> hide #61.10 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-
> seminar/2023/RIP_2023/PDB/FlgV_monomer.mrc
Opened FlgV_monomer.mrc as #64, grid size 160,160,160, pixel 4.2, shown at
level 0.0129, step 1, values float32
> ui mousemode right zoom
> select add #64
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #64,1,0,0,15.337,0,1,0,-263.5,0,0,1,89.702
> close #64
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-
> seminar/2023/RIP_2023/PDB/FlgV_ranked_0.pdb
Chain information for FlgV_ranked_0.pdb #64
---
Chain | Description
A | No description available
> hide #!63 models
> select add #64
1699 atoms, 1718 bonds, 104 residues, 1 model selected
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #64,1,0,0,-17.057,0,1,0,496.86,0,0,1,374.45
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models #64,1,0,0,322.56,0,1,0,658.36,0,0,1,299.52
> view matrix models #64,1,0,0,330.8,0,1,0,575.49,0,0,1,357.46
> ui mousemode right "rotate selected models"
> view matrix models
> #64,-0.4988,0.19032,-0.84556,295.28,-0.17231,-0.97789,-0.11845,582.23,-0.84941,0.086613,0.52057,337.44
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #64,-0.4988,0.19032,-0.84556,389.97,-0.17231,-0.97789,-0.11845,620.12,-0.84941,0.086613,0.52057,329.87
> view matrix models
> #64,-0.4988,0.19032,-0.84556,391.89,-0.17231,-0.97789,-0.11845,616.5,-0.84941,0.086613,0.52057,327.13
> hide #64 models
> select subtract #64
Nothing selected
> ui mousemode right zoom
> view temp3
> show #!504 models
> show #503 models
> hide #503 models
> show #!502 models
> show #!501 models
> show #!502.1 models
> show #!502.2 models
> hide #!502.2 models
> show #!502.2 models
> show #!502.16 models
> show #!502.17 models
> show #!502.18 models
> show #!495 models
> hide #!495 models
> show #!494 models
> show #!493 models
> show #!492 models
> show #!488 models
> show #!486 models
> show #!313 models
> turn x 90
> show #!50 models
> show #!63 models
> select add #63
260637 atoms, 262860 bonds, 33345 residues, 118 models selected
> view temp3
> hide sel cartoons
> show sel surfaces
[Repeated 1 time(s)]
> select subtract #63
312 models selected
> select add #61
55962 atoms, 56484 bonds, 3348 residues, 19 models selected
> show #61.10 models
> show #61.11 models
> show #61.12 models
> show #61.13 models
> show #61.14 models
> show #61.15 models
> show #61.16 models
> show #61.17 models
> show #61.18 models
> hide sel cartoons
> show sel surfaces
> hide #!61.10 models
> hide #!61.11 models
> hide #!61.12 models
> hide #!61.13 models
> hide #!61.14 models
> hide #!61.15 models
> hide #!61.16 models
> hide #!61.17 models
> hide #!61.18 models
> select subtract #61
18 models selected
> hide #!61 models
> show #!61 models
> show #!3 models
> hide #!3 models
> show #!4 models
> show #!6 models
> show #!5 models
> show #!7 models
> show #!8 models
> show #!9 models
> show #!10 models
> show #!11 models
> show #!12 models
> show #!13 models
> show #!14 models
> show #!312 models
> show #!115 models
> hide #!115 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> hide #!501.18 models
> hide #!501.17 models
> hide #!501.16 models
> hide #!501.15 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!502.18 models
> hide #!502.17 models
> show #!502.17 models
> hide #!502.17 models
> hide #!502.16 models
> hide #!502.15 models
> show #!502.15 models
> hide #!502.15 models
> hide #!501.14 models
> show #!501.14 models
> hide #!488.1 models
> hide #!488.2 models
> hide #!488.18 models
> hide #!488.17 models
> hide #!488.16 models
> show #!488.16 models
> hide #!488.16 models
> hide #!488.15 models
> hide #!486.18 models
> hide #!486.17 models
> hide #!486.16 models
> hide #!486.15 models
> hide #!486.1 models
> hide #!486.2 models
> hide #!486.3 models
> hide #!50.1 models
> hide #!50.2 models
> hide #!50.18 models
> hide #!50.17 models
> hide #!50.16 models
> hide #!50.15 models
> hide #!492.1 models
> hide #!492.2 models
> show #!492.2 models
> hide #!492.18 models
> hide #!492.17 models
> hide #!492.16 models
> hide #!492.15 models
> hide #!492.14 models
> hide #!492.2 models
> hide #!493.1 models
> hide #!493.2 models
> hide #!493.18 models
> hide #!493.17 models
> hide #!493.16 models
> hide #!493.15 models
> show #!493.15 models
> hide #!493.15 models
> hide #!493.14 models
> hide #!504.1 models
> show #!504.1 models
> hide #!504.1 models
> hide #!504.13 models
> hide #!504.12 models
> hide #!504.11 models
> hide #!504.10 models
> hide #!504.9 models
> show #!504.9 models
> hide #!494.1 models
> hide #!494.18 models
> hide #!494.17 models
> hide #!494.16 models
> hide #!494.15 models
> hide #!494.14 models
> lighting soft
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated3-Nov-32023.cxs
> includeMaps true
> show #!493.2 models
> show #!492.14 models
> hide #!492.14 models
> show #!492.18 models
> hide #!492.18 models
> show #!492.2 models
> color #63 #05a36aff models
> color #63 #1ba1a3ff models
> color #63 #1a9fa3ff models
> color #63 #7ea3a2ff models
> color #63 #76a398ff models
> color #63 #7ba391ff models
> color #63 #7883a3ff models
> color #63 #7b87a3ff models
> color #63 #7f8da3ff models
> color #63 #9ea39fff models
> color #63 #9fa399ff models
> color #63 #a3a28eff models
> color #63 #a39489ff models
> color #63 #a3897fff models
> color #63 #a38980ff models
> color #63 #a37e53ff models
> color #63 #a38b9cff models
> color #63 #8490a3ff models
> color #63 #8590a3ff models
> color #63 #8e9bafff models
> color #63 #8f9bafff models
> color #113 #92929257 models
> color #113 #92929200 models
> color #113 #92929216 models
> color #113 #9292921c models
> color #113 #9292921e models
> color #113 #9292921c models
> hide #!113 models
> turn y 3 120 models #63#113#479 center #481
> view temp3
> lighting simple
> show #!113 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-seminar/2023/RIP_2023/PDB/6k3i.cif
6k3i.cif title:
Salmonella hook in curved state - 66 subunit models [more info...]
Chain information for 6k3i.cif #65
---
Chain | Description | UniProt
AA AB AC AD AE AF AG AH AI AJ AK BA BB BC BD BE BF BG BH BI BJ BK CA CB CC CD CE CF CG CH CI CJ CK DA DB DC DD DE DF DG DH DI DJ DK EA EB EC ED EE EF EG EH EI EJ EK FA FB FC FD FE FF FG FH FI FJ FK | Flagellar hook protein FlgE | FLGE_SALTY 1-402
> select add #65
195294 atoms, 198198 bonds, 26532 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #65,1,0,0,570.39,0,1,0,274.88,0,0,1,601.5
> view matrix models #65,1,0,0,306.42,0,1,0,306.18,0,0,1,686.62
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> view matrix models
> #65,0.99657,0.052276,-0.064174,310.39,-0.077286,0.86525,-0.49535,507.66,0.029632,0.49861,0.86632,571.26
> ui mousemode right "translate selected models"
> view matrix models
> #65,0.99657,0.052276,-0.064174,303.9,-0.077286,0.86525,-0.49535,454.17,0.029632,0.49861,0.86632,560.21
> ui mousemode right zoom
> fitmap #65 inMap #113
Fit molecule 6k3i.cif (#65) to map Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
using 195294 atoms
average map value = 0.02735, steps = 236
shifted from previous position = 97.2
rotated from previous position = 9.57 degrees
atoms outside contour = 58822, contour level = 0.01507
Position of 6k3i.cif (#65) relative to Hpwt-L0.08-Global-Rod-no-MS.mrc (#113)
coordinates:
Matrix rotation and translation
0.99850429 -0.05442111 0.00524402 304.95986968
0.05061426 0.88384709 -0.46502956 388.34044518
0.02067251 0.46459944 0.88527960 446.23889434
Axis 0.99354242 -0.01648922 0.11225671
Axis point 0.00000000 -628.70252051 1004.41475036
Rotation angle (degrees) 27.89389175
Shift along axis 346.68044466
> view temp3
> select subtract #65
Nothing selected
> select add #65
195294 atoms, 198198 bonds, 26532 residues, 1 model selected
> select subtract #65
Nothing selected
> color #65 #929292ff
> select add #65
195294 atoms, 198198 bonds, 26532 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models
> #65,0.99611,-0.08548,0.02158,331.12,0.0857,0.88138,-0.46457,402.22,0.020692,0.46462,0.88527,506.16
> select subtract #65
Nothing selected
> turn y 30 12 models #63#65#113#479 center #481
[Repeated 1 time(s)]
> view temp3
> ui mousemode right zoom
> view name temp4
> turn y 30 12 models #63#65#113#479 center #481
> view temp4
> color #60 #015849ff
> color #61 #92daf5ff models
> lighting soft
> color #61 #def2b3ff models
> color #61 #f1f2abff models
> color #61 #ced3f2ff models
> color #61 #bac8f2ff models
> color #61 #bdcef2ff models
> color #61 #b7d9f2ff models
> color #61 #b8d6f2ff models
> color #61 #ecf2c4ff models
> color #61 #ecf2c3ff models
> color #61 #b8d6f2ff models
> color #63 #b4bb9dff models
> color #63 #bbb493ff models
> color #63 #bbaf8fff models
> color #63 #babb8fff models
> color #63 #acbb93ff models
> color #63 #bb9161ff models
> color #63 #bba480ff models
> color #63 #bb9d82ff models
> color #63 #bbb68aff models
> color #63 #bbb381ff models
> color #63 #bbb281ff models
> color #63 #bbb181ff models
> color #63 #bba19aff models
> color #63 #8dbbb0ff models
> color #63 #a6bb9aff models
> color #63 #bb3e9fff models
> color #63 #afbba2ff models
> color #63 #b9bb91ff models
> color #63 #babb92ff models
> color #63 #b9bb86ff models
> color #63 #bbbb85ff models
> color #63 #bbb07eff models
> color #63 #bbae7cff models
> color #63 #bbad72ff models
> color #63 #bbac72ff models
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated3-Nov-32023.cxs
> includeMaps true
> color #61 #818e9cff models
> color #61 #a6b7c9ff models
> color #61 #9fafc1ff models
> lighting simple
> hide #65 models
> show #65 models
> hide #!113 models
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated3-Nov-32023.cxs
> includeMaps true
> view name temp4
> view temp4
> turn y -3 120 models #259 center #481
> turn y -30 120 models #63#65#113#479 center #481
> view temp4
> hide #!52 models
> show #!52 models
> turn y -30 120 models #52#63#65#113#479 center #481
> view temp4
[Repeated 1 time(s)]
> turn y -3 120 models #492.3 center #492.3
> turn y -3 120 models #492.2 center #492.2
> turn y -30 120 models #52#63#65#113#479 center #481
> turn y 3 120 models #492.2 center #492.2
> view temp4
> hide #!52 models
> show #!52 models
> hide #!50 models
> show #!50 models
> hide #!63 models
> show #!63 models
> turn y -3 120 models #259#63#479 center #481
> hide #!53 models
> show #!53 models
> hide #!52 models
> show #!52 models
> hide #65 models
> show #65 models
> turn y -3 120 models #52#65 center #481
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> view temp4
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> turn y 3 120 models #492.3 center #492.3
> turn y 3 120 models #492.4 center #492.4
> turn y 3 120 models #492.5 center #492.5
> turn y 3 120 models #492.6 center #492.6
> turn y 3 120 models #492.7 center #492.7
> turn y 3 120 models #492.8 center #492.8
> turn y 3 120 models #492.9 center #492.9
> turn y 3 120 models #492.10 center #492.10
> turn y 3 120 models #492.11 center #492.11
> turn y 3 120 models #492.12 center #492.12
> turn y 3 120 models #492.13 center #492.13
> save /Volumes/Backup-95/Chimera-2023/For-RIPtalk/Updated3-Nov-32023.cxs
> includeMaps true
——— End of log from Fri Nov 3 16:43:20 2023 ———
opened ChimeraX session
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!50 models
> hide #!61 models
> show #!61 models
> hide #!16 models
> show #!16 models
> hide #65 models
> show #65 models
> hide #!486 models
> hide #!488 models
> hide #!492 models
> hide #!493 models
> hide #!494 models
> hide #!501 models
> hide #!502 models
> hide #!504 models
> show #!504 models
> hide #!504 models
> Crossfade; show #!504 models
Unknown command: Crossfade; show #!504 models
> show #!504 models
> hide #!504 models
> crossfade
> show #!504 models
> show #!506 models
> hide #!506 models
> show #!50 models
> hide #!50 models
> hide #!52 models
> show #!52 models
> hide #!504 models
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> turn y 3 120 models #492.3 center #492.3
> turn y 3 120 models #492.4 center #492.4
> turn y 3 120 models #492.5 center #492.5
> turn y 3 120 models #492.6 center #492.6
> turn y 3 120 models #492.7 center #492.7
> turn y 3 120 models #492.8 center #492.8
> turn y 3 120 models #492.9 center #492.9
> turn y 3 120 models #492.10 center #492.10
> turn y 3 120 models #492.11 center #492.11
> turn y 3 120 models #492.12 center #492.12
> turn y 3 120 models #492.13 center #492.13
> wait 120
> hide #!504 models
> hide #!50 models
> hide #!492 models
> hide #!493 models
> hide #!494 models
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> turn y 3 120 models #492.3 center #492.3
> turn y 3 120 models #492.4 center #492.4
> turn y 3 120 models #492.5 center #492.5
> turn y 3 120 models #492.6 center #492.6
> turn y 3 120 models #492.7 center #492.7
> turn y 3 120 models #492.8 center #492.8
> turn y 3 120 models #492.9 center #492.9
> turn y 3 120 models #492.10 center #492.10
> turn y 3 120 models #492.11 center #492.11
> turn y 3 120 models #492.12 center #492.12
> turn y 3 120 models #492.13 center #492.13
> crossfade
> show #!4-14#486#488#501#502 models
> wait 50
> wait 120
> hide #!504 models
> hide #!502 models
> hide #!501 models
> hide #!494 models
> hide #!493 models
> hide #!492 models
> hide #!488 models
> hide #!486 models
> hide #!50 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> turn y 3 120 models #492.3 center #492.3
> turn y 3 120 models #492.4 center #492.4
> turn y 3 120 models #492.5 center #492.5
> turn y 3 120 models #492.6 center #492.6
> turn y 3 120 models #492.7 center #492.7
> turn y 3 120 models #492.8 center #492.8
> turn y 3 120 models #492.9 center #492.9
> turn y 3 120 models #492.10 center #492.10
> turn y 3 120 models #492.11 center #492.11
> turn y 3 120 models #492.12 center #492.12
> turn y 3 120 models #492.13 center #492.13
> crossfade
> show #!4-14#486#488#501#502 models
> wait 50
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!61 models
> show #!61 models
> hide #!50 models
> hide #!484 models
> hide #!486 models
> hide #!488 models
> hide #!492 models
> hide #!493 models
> hide #!494 models
> hide #!504 models
> hide #!501 models
> hide #!502 models
> movie record
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> turn y 3 120 models #492.3 center #492.3
> turn y 3 120 models #492.4 center #492.4
> turn y 3 120 models #492.5 center #492.5
> turn y 3 120 models #492.6 center #492.6
> turn y 3 120 models #492.7 center #492.7
> turn y 3 120 models #492.8 center #492.8
> turn y 3 120 models #492.9 center #492.9
> turn y 3 120 models #492.10 center #492.10
> turn y 3 120 models #492.11 center #492.11
> turn y 3 120 models #492.12 center #492.12
> turn y 3 120 models #492.13 center #492.13
> wait 50
> crossfade
> show #!4-14#486#488#501#502 models
> wait 50
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test1.mov
Movie saved to /Users/shoichi/Desktop/Hp_test1.mov
> save /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated5-Nov-32023.cxs includeMaps true
——— End of log from Fri Nov 3 19:42:44 2023 ———
opened ChimeraX session
> hide #!4 models
> hide #!5 models
> hide #!8 models
> hide #!7 models
> hide #!6 models
> hide #!9 models
> hide #!10 models
> hide #!12 models
> hide #!11 models
> hide #!13 models
> hide #!14 models
> hide #!50 models
> hide #!514 models
> hide #!504 models
> hide #!502 models
> show #503 models
> hide #503 models
> show #!504 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> show #!501.3 models
> hide #!501.18 models
> hide #!501.17 models
> hide #!501.16 models
> show #!502 models
> hide #!502.18 models
> hide #!502.17 models
> hide #!502.16 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!486.1 models
> hide #!486.2 models
> hide #!486.3 models
> show #!486.3 models
> hide #!486.18 models
> hide #!486.17 models
> hide #!486.16 models
> hide #!486.15 models
> show #!486.15 models
> hide #!486 models
> show #!486 models
> hide #!486 models
> show #!486 models
> hide #!488.1 models
> hide #!488.2 models
> hide #!488.18 models
> hide #!488.17 models
> hide #!488.16 models
> hide #!488 models
> hide #!486 models
> hide #!494 models
> hide #!493 models
> hide #!492 models
> hide #!501 models
> hide #!502 models
> hide #!504 models
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> turn y 3 120 models #492.3 center #492.3
> turn y 3 120 models #492.4 center #492.4
> turn y 3 120 models #492.5 center #492.5
> turn y 3 120 models #492.6 center #492.6
> turn y 3 120 models #492.7 center #492.7
> turn y 3 120 models #492.8 center #492.8
> turn y 3 120 models #492.9 center #492.9
> turn y 3 120 models #492.10 center #492.10
> turn y 3 120 models #492.11 center #492.11
> turn y 3 120 models #492.12 center #492.12
> turn y 3 120 models #492.13 center #492.13
> wait 120
> crossfade
> show #!4-14#486#488#501#502 models
> wait 50
> hide #!4 models
> hide #65 models
> show #65 models
> hide #!4-14#!50#!63#!492-494#!486#!488#!501-502#!504 models
> show #!63 models
> view temp4
> show #!486 models
> show #!488 models
> hide #!486.18 models
> hide #!486.17 models
> hide #!486.16 models
> hide #!486.1 models
> hide #!486.2 models
> show #!4 models
> show #!14 models
> hide #!488.1 models
> hide #!488.3 models
> show #!488.3 models
> hide #!486.3 models
> show #!486.3 models
> hide #!488.18 models
> hide #!488.17 models
> hide #!488.16 models
> hide #!488.15 models
> hide #!488.14 models
> show #!488.14 models
> hide #!486.15 models
> hide #!488.2 models
> hide #!488 models
> show #!488 models
> show #!501 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> show #!501.3 models
> hide #!502.1 models
> show #!502.1 models
> hide #!502 models
> show #!502 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!502.3 models
> show #!502.3 models
> hide #!502.18 models
> hide #!502.17 models
> hide #!502.16 models
> hide #!502.15 models
> hide #!502.14 models
> show #!502.14 models
> hide #!501.18 models
> hide #!501.17 models
> hide #!501.16 models
> hide #!501.15 models
> hide #!502 models
> hide #!501 models
> hide #!488 models
> hide #!486 models
> hide #!4 models
> hide #!14 models
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -3 120 models #259#63#479 center #481
> turn y -3 120 models #52#65 center #481
> turn y 3 120 models #492.2 center #492.2
> turn y 3 120 models #492.3 center #492.3
> turn y 3 120 models #492.4 center #492.4
> turn y 3 120 models #492.5 center #492.5
> turn y 3 120 models #492.6 center #492.6
> turn y 3 120 models #492.7 center #492.7
> turn y 3 120 models #492.8 center #492.8
> turn y 3 120 models #492.9 center #492.9
> turn y 3 120 models #492.10 center #492.10
> turn y 3 120 models #492.11 center #492.11
> turn y 3 120 models #492.12 center #492.12
> turn y 3 120 models #492.13 center #492.13
> wait 120
> show #!4-14#!486#!488#!501#!502 models
> wait 50
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> view temp4
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -2 120 models #259#63#479 center #481
> turn y -2 120 models #52#65 center #481
> turn y 4 120 models #492.2 center #492.2
> turn y 4 120 models #492.3 center #492.3
> turn y 4 120 models #492.4 center #492.4
> turn y 4 120 models #492.5 center #492.5
> turn y 4 120 models #492.6 center #492.6
> turn y 4 120 models #492.7 center #492.7
> turn y 4 120 models #492.8 center #492.8
> turn y 4 120 models #492.9 center #492.9
> turn y 4 120 models #492.10 center #492.10
> turn y 4 120 models #492.11 center #492.11
> turn y 4 120 models #492.12 center #492.12
> turn y 4 120 models #492.13 center #492.13
> wait 120
> show #!4-14#!486#!488#!501#!502 models
> wait 50
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -2 120 models #259#63#479 center #481
> turn y -2 120 models #52#65 center #481
> turn y 6 120 models #492.2 center #492.2
> turn y 6 120 models #492.3 center #492.3
> turn y 6 120 models #492.4 center #492.4
> turn y 6 120 models #492.5 center #492.5
> turn y 6 120 models #492.6 center #492.6
> turn y 6 120 models #492.7 center #492.7
> turn y 6 120 models #492.8 center #492.8
> turn y 6 120 models #492.9 center #492.9
> turn y 6 120 models #492.10 center #492.10
> turn y 6 120 models #492.11 center #492.11
> turn y 6 120 models #492.12 center #492.12
> turn y 6 120 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y -2 120 models #259#63#479 center #481
> turn y -2 120 models #52#65 center #481
> turn y 6 120 models #492.2 center #492.2
> turn y 6 120 models #492.3 center #492.3
> turn y 6 120 models #492.4 center #492.4
> turn y 6 120 models #492.5 center #492.5
> turn y 6 120 models #492.6 center #492.6
> turn y 6 120 models #492.7 center #492.7
> turn y 6 120 models #492.8 center #492.8
> turn y 6 120 models #492.9 center #492.9
> turn y 6 120 models #492.10 center #492.10
> turn y 6 120 models #492.11 center #492.11
> turn y 6 120 models #492.12 center #492.12
> turn y 6 120 models #492.13 center #492.13
> wait 120
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -2 120 models #259#63#479 center #481
> turn y -2 120 models #52#65 center #481
> turn y 12 120 models #492.2 center #492.2
> turn y 12 120 models #492.3 center #492.3
> turn y 12 120 models #492.4 center #492.4
> turn y 12 120 models #492.5 center #492.5
> turn y 12 120 models #492.6 center #492.6
> turn y 12 120 models #492.7 center #492.7
> turn y 12 120 models #492.8 center #492.8
> turn y 12 120 models #492.9 center #492.9
> turn y 12 120 models #492.10 center #492.10
> turn y 12 120 models #492.11 center #492.11
> turn y 12 120 models #492.12 center #492.12
> turn y 12 120 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y -2 120 models #259#63#479 center #481
> turn y -2 120 models #52#65 center #481
> turn y 6 120 models #492.2 center #492.2
> turn y 6 120 models #492.3 center #492.3
> turn y 6 120 models #492.4 center #492.4
> turn y 6 120 models #492.5 center #492.5
> turn y 6 120 models #492.6 center #492.6
> turn y 6 120 models #492.7 center #492.7
> turn y 6 120 models #492.8 center #492.8
> turn y 6 120 models #492.9 center #492.9
> turn y 6 120 models #492.10 center #492.10
> turn y 6 120 models #492.11 center #492.11
> turn y 6 120 models #492.12 center #492.12
> turn y 6 120 models #492.13 center #492.13
> wait 120
> save /Users/shoichi/Desktop/Movie_Updated6-Nov-32023.cxs includeMaps true
——— End of log from Sat Nov 4 10:04:57 2023 ———
opened ChimeraX session
> open /Volumes/Backup-95/Chimera-2023/From_Jian/Hp_MS-FliF.pdb
Summary of feedback from opening
/Volumes/Backup-95/Chimera-2023/From_Jian/Hp_MS-FliF.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LYS A 19 PHE A 44 1 26
Start residue of secondary structure not found: HELIX 2 2 PRO A 63 GLN A 75 1
13
Start residue of secondary structure not found: HELIX 3 3 LYS A 92 LYS A 94 1
3
Start residue of secondary structure not found: HELIX 4 4 TYR A 96 SER A 104 1
9
Start residue of secondary structure not found: SHEET 1 1 1 TYR A 54 GLU A 59
0
355 messages similar to the above omitted
Chain information for Hp_MS-FliF.pdb
---
Chain | Description
66.1/A 66.2/A 66.3/A 66.4/A 66.5/A 66.6/A 66.7/A 66.8/A 66.9/A 66.10/A 66.11/A 66.12/A 66.13/A 66.14/A 66.15/A 66.16/A 66.17/A 66.18/A 66.19/A 66.20/A 66.21/A | No description available
66.22/A 66.23/A 66.24/A 66.25/A 66.26/A 66.27/A 66.28/A 66.29/A 66.30/A 66.31/A 66.32/A 66.33/A 66.34/A 66.35/A 66.36/A 66.37/A 66.38/A 66.39/A 66.40/A 66.41/A 66.42/A | No description available
66.43/A 66.44/A 66.45/A 66.46/A 66.47/A 66.48/A 66.49/A 66.50/A 66.51/A 66.52/A 66.53/A 66.54/A 66.55/A 66.56/A 66.57/A 66.58/A 66.59/A 66.60/A 66.61/A 66.62/A 66.63/A 66.64/A 66.65/A 66.66/A 66.67/A 66.68/A 66.69/A 66.70/A 66.71/A 66.72/A 66.73/A 66.74/A 66.75/A 66.76/A 66.77/A 66.78/A 66.79/A 66.80/A 66.81/A | No description available
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> select add #66
112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 121 models
selected
> ui mousemode right "translate selected models"
> view matrix models #66,1,0,0,1.6844e-13,0,1,0,505.73,0,0,1,498.44
> view matrix models #66,1,0,0,362.29,0,1,0,278.98,0,0,1,597.29
> view matrix models #66,1,0,0,476.62,0,1,0,559.63,0,0,1,529
> view orient
> ui tool show "Side View"
> view matrix models #66,1,0,0,539.86,0,1,0,540.68,0,0,1,529
> view matrix models #66,1,0,0,539.89,0,1,0,541.19,0,0,1,537.94
> ui tool show "Fit in Map"
> fitmap #66 inMap #479
Fit molecules Hp_MS-FliF.pdb (#66.1), Hp_MS-FliF.pdb (#66.2), Hp_MS-FliF.pdb
(#66.3), Hp_MS-FliF.pdb (#66.4), Hp_MS-FliF.pdb (#66.5), Hp_MS-FliF.pdb
(#66.6), Hp_MS-FliF.pdb (#66.7), Hp_MS-FliF.pdb (#66.8), Hp_MS-FliF.pdb
(#66.9), Hp_MS-FliF.pdb (#66.10), Hp_MS-FliF.pdb (#66.11), Hp_MS-FliF.pdb
(#66.12), Hp_MS-FliF.pdb (#66.13), Hp_MS-FliF.pdb (#66.14), Hp_MS-FliF.pdb
(#66.15), Hp_MS-FliF.pdb (#66.16), Hp_MS-FliF.pdb (#66.17), Hp_MS-FliF.pdb
(#66.18), Hp_MS-FliF.pdb (#66.19), Hp_MS-FliF.pdb (#66.20), Hp_MS-FliF.pdb
(#66.21), Hp_MS-FliF.pdb (#66.22), Hp_MS-FliF.pdb (#66.23), Hp_MS-FliF.pdb
(#66.24), Hp_MS-FliF.pdb (#66.25), Hp_MS-FliF.pdb (#66.26), Hp_MS-FliF.pdb
(#66.27), Hp_MS-FliF.pdb (#66.28), Hp_MS-FliF.pdb (#66.29), Hp_MS-FliF.pdb
(#66.30), Hp_MS-FliF.pdb (#66.31), Hp_MS-FliF.pdb (#66.32), Hp_MS-FliF.pdb
(#66.33), Hp_MS-FliF.pdb (#66.34), Hp_MS-FliF.pdb (#66.35), Hp_MS-FliF.pdb
(#66.36), Hp_MS-FliF.pdb (#66.37), Hp_MS-FliF.pdb (#66.38), Hp_MS-FliF.pdb
(#66.39), Hp_MS-FliF.pdb (#66.40), Hp_MS-FliF.pdb (#66.41), Hp_MS-FliF.pdb
(#66.42), Hp_MS-FliF.pdb (#66.43), Hp_MS-FliF.pdb (#66.44), Hp_MS-FliF.pdb
(#66.45), Hp_MS-FliF.pdb (#66.46), Hp_MS-FliF.pdb (#66.47), Hp_MS-FliF.pdb
(#66.48), Hp_MS-FliF.pdb (#66.49), Hp_MS-FliF.pdb (#66.50), Hp_MS-FliF.pdb
(#66.51), Hp_MS-FliF.pdb (#66.52), Hp_MS-FliF.pdb (#66.53), Hp_MS-FliF.pdb
(#66.54), Hp_MS-FliF.pdb (#66.55), Hp_MS-FliF.pdb (#66.56), Hp_MS-FliF.pdb
(#66.57), Hp_MS-FliF.pdb (#66.58), Hp_MS-FliF.pdb (#66.59), Hp_MS-FliF.pdb
(#66.60), Hp_MS-FliF.pdb (#66.61), Hp_MS-FliF.pdb (#66.62), Hp_MS-FliF.pdb
(#66.63), Hp_MS-FliF.pdb (#66.64), Hp_MS-FliF.pdb (#66.65), Hp_MS-FliF.pdb
(#66.66), Hp_MS-FliF.pdb (#66.67), Hp_MS-FliF.pdb (#66.68), Hp_MS-FliF.pdb
(#66.69), Hp_MS-FliF.pdb (#66.70), Hp_MS-FliF.pdb (#66.71), Hp_MS-FliF.pdb
(#66.72), Hp_MS-FliF.pdb (#66.73), Hp_MS-FliF.pdb (#66.74), Hp_MS-FliF.pdb
(#66.75), Hp_MS-FliF.pdb (#66.76), Hp_MS-FliF.pdb (#66.77), Hp_MS-FliF.pdb
(#66.78), Hp_MS-FliF.pdb (#66.79), Hp_MS-FliF.pdb (#66.80), Hp_MS-FliF.pdb
(#66.81) to map New_FliF.mrc gaussian (#479) using 112125 atoms
average map value = 0.01434, steps = 64
shifted from previous position = 3
rotated from previous position = 0.712 degrees
atoms outside contour = 58197, contour level = 0.011509
Position of Hp_MS-FliF.pdb (#66.1) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.2) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.3) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.4) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.5) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.6) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.7) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.8) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.9) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.10) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.11) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.12) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.13) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.14) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.15) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.16) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.17) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.18) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.19) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.20) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.21) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.22) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Position of Hp_MS-FliF.pdb (#66.23) relative to New_FliF.mrc gaussian (#479)
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Position of Hp_MS-FliF.pdb (#66.24) relative to New_FliF.mrc gaussian (#479)
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Position of Hp_MS-FliF.pdb (#66.25) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Position of Hp_MS-FliF.pdb (#66.26) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.27) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.28) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.29) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.30) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.31) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.32) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.33) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.34) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.35) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.36) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.37) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.38) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.39) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.40) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.41) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.42) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.43) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.44) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.45) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.46) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.47) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.48) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.49) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.50) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.51) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.52) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.53) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.54) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.55) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.56) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.57) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.58) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.59) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.60) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.61) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.62) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
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Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.63) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.64) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.65) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.66) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.67) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.68) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.69) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.70) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.71) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.72) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.73) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.74) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.75) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.76) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.77) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.78) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.79) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.80) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
Position of Hp_MS-FliF.pdb (#66.81) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50689197 -0.86200957 -0.00012979 1003.58107827
0.86200958 -0.50689197 -0.00005943 69.30490932
-0.00001457 -0.00014200 0.99999997 -178.43488870
Axis -0.00004790 -0.00006684 1.00000000
Axis point 481.96692456 321.69066754 0.00000000
Rotation angle (degrees) 120.45702733
Shift along axis -178.48759074
> fitmap #66 inMap #479
Fit molecules Hp_MS-FliF.pdb (#66.1), Hp_MS-FliF.pdb (#66.2), Hp_MS-FliF.pdb
(#66.3), Hp_MS-FliF.pdb (#66.4), Hp_MS-FliF.pdb (#66.5), Hp_MS-FliF.pdb
(#66.6), Hp_MS-FliF.pdb (#66.7), Hp_MS-FliF.pdb (#66.8), Hp_MS-FliF.pdb
(#66.9), Hp_MS-FliF.pdb (#66.10), Hp_MS-FliF.pdb (#66.11), Hp_MS-FliF.pdb
(#66.12), Hp_MS-FliF.pdb (#66.13), Hp_MS-FliF.pdb (#66.14), Hp_MS-FliF.pdb
(#66.15), Hp_MS-FliF.pdb (#66.16), Hp_MS-FliF.pdb (#66.17), Hp_MS-FliF.pdb
(#66.18), Hp_MS-FliF.pdb (#66.19), Hp_MS-FliF.pdb (#66.20), Hp_MS-FliF.pdb
(#66.21), Hp_MS-FliF.pdb (#66.22), Hp_MS-FliF.pdb (#66.23), Hp_MS-FliF.pdb
(#66.24), Hp_MS-FliF.pdb (#66.25), Hp_MS-FliF.pdb (#66.26), Hp_MS-FliF.pdb
(#66.27), Hp_MS-FliF.pdb (#66.28), Hp_MS-FliF.pdb (#66.29), Hp_MS-FliF.pdb
(#66.30), Hp_MS-FliF.pdb (#66.31), Hp_MS-FliF.pdb (#66.32), Hp_MS-FliF.pdb
(#66.33), Hp_MS-FliF.pdb (#66.34), Hp_MS-FliF.pdb (#66.35), Hp_MS-FliF.pdb
(#66.36), Hp_MS-FliF.pdb (#66.37), Hp_MS-FliF.pdb (#66.38), Hp_MS-FliF.pdb
(#66.39), Hp_MS-FliF.pdb (#66.40), Hp_MS-FliF.pdb (#66.41), Hp_MS-FliF.pdb
(#66.42), Hp_MS-FliF.pdb (#66.43), Hp_MS-FliF.pdb (#66.44), Hp_MS-FliF.pdb
(#66.45), Hp_MS-FliF.pdb (#66.46), Hp_MS-FliF.pdb (#66.47), Hp_MS-FliF.pdb
(#66.48), Hp_MS-FliF.pdb (#66.49), Hp_MS-FliF.pdb (#66.50), Hp_MS-FliF.pdb
(#66.51), Hp_MS-FliF.pdb (#66.52), Hp_MS-FliF.pdb (#66.53), Hp_MS-FliF.pdb
(#66.54), Hp_MS-FliF.pdb (#66.55), Hp_MS-FliF.pdb (#66.56), Hp_MS-FliF.pdb
(#66.57), Hp_MS-FliF.pdb (#66.58), Hp_MS-FliF.pdb (#66.59), Hp_MS-FliF.pdb
(#66.60), Hp_MS-FliF.pdb (#66.61), Hp_MS-FliF.pdb (#66.62), Hp_MS-FliF.pdb
(#66.63), Hp_MS-FliF.pdb (#66.64), Hp_MS-FliF.pdb (#66.65), Hp_MS-FliF.pdb
(#66.66), Hp_MS-FliF.pdb (#66.67), Hp_MS-FliF.pdb (#66.68), Hp_MS-FliF.pdb
(#66.69), Hp_MS-FliF.pdb (#66.70), Hp_MS-FliF.pdb (#66.71), Hp_MS-FliF.pdb
(#66.72), Hp_MS-FliF.pdb (#66.73), Hp_MS-FliF.pdb (#66.74), Hp_MS-FliF.pdb
(#66.75), Hp_MS-FliF.pdb (#66.76), Hp_MS-FliF.pdb (#66.77), Hp_MS-FliF.pdb
(#66.78), Hp_MS-FliF.pdb (#66.79), Hp_MS-FliF.pdb (#66.80), Hp_MS-FliF.pdb
(#66.81) to map New_FliF.mrc gaussian (#479) using 112125 atoms
average map value = 0.01434, steps = 48
shifted from previous position = 0.000782
rotated from previous position = 0.0113 degrees
atoms outside contour = 58197, contour level = 0.011509
Position of Hp_MS-FliF.pdb (#66.1) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.2) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.3) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.4) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.5) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.6) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.7) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.8) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.9) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.10) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.11) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.12) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.13) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.14) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.15) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.16) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.17) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.18) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.19) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.20) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.21) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.22) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004997 -0.00006410 1.00000000
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Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.23) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.24) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.25) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.26) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.27) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.28) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.29) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.30) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.31) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.32) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.33) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.34) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.35) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.36) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.37) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.38) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.39) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.40) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.41) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.42) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.43) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.44) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.45) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.46) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.47) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.48) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.49) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.50) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.51) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.52) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.53) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.54) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.55) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
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Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.56) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.57) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.58) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.59) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.60) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.61) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.62) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.63) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.64) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.65) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.66) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.67) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.68) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.69) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.70) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.71) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.72) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.73) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.74) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.75) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.76) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.77) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.78) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.79) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.80) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
Position of Hp_MS-FliF.pdb (#66.81) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50706226 -0.86190940 -0.00013055 1003.58024391
0.86190941 -0.50706226 -0.00005353 69.30499376
-0.00002006 -0.00013966 0.99999997 -178.43439725
Axis -0.00004997 -0.00006410 1.00000000
Axis point 481.97070091 321.62482461 0.00000000
Rotation angle (degrees) 120.46834716
Shift along axis -178.48898706
> fitmap #66 inMap #479
Fit molecules Hp_MS-FliF.pdb (#66.1), Hp_MS-FliF.pdb (#66.2), Hp_MS-FliF.pdb
(#66.3), Hp_MS-FliF.pdb (#66.4), Hp_MS-FliF.pdb (#66.5), Hp_MS-FliF.pdb
(#66.6), Hp_MS-FliF.pdb (#66.7), Hp_MS-FliF.pdb (#66.8), Hp_MS-FliF.pdb
(#66.9), Hp_MS-FliF.pdb (#66.10), Hp_MS-FliF.pdb (#66.11), Hp_MS-FliF.pdb
(#66.12), Hp_MS-FliF.pdb (#66.13), Hp_MS-FliF.pdb (#66.14), Hp_MS-FliF.pdb
(#66.15), Hp_MS-FliF.pdb (#66.16), Hp_MS-FliF.pdb (#66.17), Hp_MS-FliF.pdb
(#66.18), Hp_MS-FliF.pdb (#66.19), Hp_MS-FliF.pdb (#66.20), Hp_MS-FliF.pdb
(#66.21), Hp_MS-FliF.pdb (#66.22), Hp_MS-FliF.pdb (#66.23), Hp_MS-FliF.pdb
(#66.24), Hp_MS-FliF.pdb (#66.25), Hp_MS-FliF.pdb (#66.26), Hp_MS-FliF.pdb
(#66.27), Hp_MS-FliF.pdb (#66.28), Hp_MS-FliF.pdb (#66.29), Hp_MS-FliF.pdb
(#66.30), Hp_MS-FliF.pdb (#66.31), Hp_MS-FliF.pdb (#66.32), Hp_MS-FliF.pdb
(#66.33), Hp_MS-FliF.pdb (#66.34), Hp_MS-FliF.pdb (#66.35), Hp_MS-FliF.pdb
(#66.36), Hp_MS-FliF.pdb (#66.37), Hp_MS-FliF.pdb (#66.38), Hp_MS-FliF.pdb
(#66.39), Hp_MS-FliF.pdb (#66.40), Hp_MS-FliF.pdb (#66.41), Hp_MS-FliF.pdb
(#66.42), Hp_MS-FliF.pdb (#66.43), Hp_MS-FliF.pdb (#66.44), Hp_MS-FliF.pdb
(#66.45), Hp_MS-FliF.pdb (#66.46), Hp_MS-FliF.pdb (#66.47), Hp_MS-FliF.pdb
(#66.48), Hp_MS-FliF.pdb (#66.49), Hp_MS-FliF.pdb (#66.50), Hp_MS-FliF.pdb
(#66.51), Hp_MS-FliF.pdb (#66.52), Hp_MS-FliF.pdb (#66.53), Hp_MS-FliF.pdb
(#66.54), Hp_MS-FliF.pdb (#66.55), Hp_MS-FliF.pdb (#66.56), Hp_MS-FliF.pdb
(#66.57), Hp_MS-FliF.pdb (#66.58), Hp_MS-FliF.pdb (#66.59), Hp_MS-FliF.pdb
(#66.60), Hp_MS-FliF.pdb (#66.61), Hp_MS-FliF.pdb (#66.62), Hp_MS-FliF.pdb
(#66.63), Hp_MS-FliF.pdb (#66.64), Hp_MS-FliF.pdb (#66.65), Hp_MS-FliF.pdb
(#66.66), Hp_MS-FliF.pdb (#66.67), Hp_MS-FliF.pdb (#66.68), Hp_MS-FliF.pdb
(#66.69), Hp_MS-FliF.pdb (#66.70), Hp_MS-FliF.pdb (#66.71), Hp_MS-FliF.pdb
(#66.72), Hp_MS-FliF.pdb (#66.73), Hp_MS-FliF.pdb (#66.74), Hp_MS-FliF.pdb
(#66.75), Hp_MS-FliF.pdb (#66.76), Hp_MS-FliF.pdb (#66.77), Hp_MS-FliF.pdb
(#66.78), Hp_MS-FliF.pdb (#66.79), Hp_MS-FliF.pdb (#66.80), Hp_MS-FliF.pdb
(#66.81) to map New_FliF.mrc gaussian (#479) using 112125 atoms
average map value = 0.01434, steps = 60
shifted from previous position = 0.00887
rotated from previous position = 0.0125 degrees
atoms outside contour = 58199, contour level = 0.011509
Position of Hp_MS-FliF.pdb (#66.1) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.2) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.3) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.4) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.5) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.6) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.7) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.8) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.9) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.10) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.11) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.12) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.13) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.14) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.15) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.16) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.17) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.18) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.19) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.20) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.21) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.22) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.23) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
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Position of Hp_MS-FliF.pdb (#66.24) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.25) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.26) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.27) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.28) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.29) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.30) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.31) relative to New_FliF.mrc gaussian (#479)
coordinates:
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.32) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.33) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.34) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.35) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.36) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.37) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.38) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.39) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.40) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.41) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.42) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.43) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.44) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.45) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.46) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.47) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.48) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.49) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.50) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.51) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.52) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.53) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.54) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.55) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.56) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.57) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.58) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.59) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.60) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.61) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.62) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.63) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.64) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
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Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.65) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.66) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.67) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.68) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.69) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.70) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.71) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.72) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.73) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.74) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.75) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.76) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.77) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.78) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.79) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.80) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
Position of Hp_MS-FliF.pdb (#66.81) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696428 -0.86196705 0.00003521 1003.60001806
0.86196705 -0.50696428 0.00003332 69.31531171
-0.00001087 0.00004724 0.99999998 -178.44260284
Axis 0.00000807 0.00002673 1.00000000
Axis point 481.97556645 321.68455505 0.00000000
Rotation angle (degrees) 120.46183388
Shift along axis -178.43264633
> fitmap #66 inMap #479
Fit molecules Hp_MS-FliF.pdb (#66.1), Hp_MS-FliF.pdb (#66.2), Hp_MS-FliF.pdb
(#66.3), Hp_MS-FliF.pdb (#66.4), Hp_MS-FliF.pdb (#66.5), Hp_MS-FliF.pdb
(#66.6), Hp_MS-FliF.pdb (#66.7), Hp_MS-FliF.pdb (#66.8), Hp_MS-FliF.pdb
(#66.9), Hp_MS-FliF.pdb (#66.10), Hp_MS-FliF.pdb (#66.11), Hp_MS-FliF.pdb
(#66.12), Hp_MS-FliF.pdb (#66.13), Hp_MS-FliF.pdb (#66.14), Hp_MS-FliF.pdb
(#66.15), Hp_MS-FliF.pdb (#66.16), Hp_MS-FliF.pdb (#66.17), Hp_MS-FliF.pdb
(#66.18), Hp_MS-FliF.pdb (#66.19), Hp_MS-FliF.pdb (#66.20), Hp_MS-FliF.pdb
(#66.21), Hp_MS-FliF.pdb (#66.22), Hp_MS-FliF.pdb (#66.23), Hp_MS-FliF.pdb
(#66.24), Hp_MS-FliF.pdb (#66.25), Hp_MS-FliF.pdb (#66.26), Hp_MS-FliF.pdb
(#66.27), Hp_MS-FliF.pdb (#66.28), Hp_MS-FliF.pdb (#66.29), Hp_MS-FliF.pdb
(#66.30), Hp_MS-FliF.pdb (#66.31), Hp_MS-FliF.pdb (#66.32), Hp_MS-FliF.pdb
(#66.33), Hp_MS-FliF.pdb (#66.34), Hp_MS-FliF.pdb (#66.35), Hp_MS-FliF.pdb
(#66.36), Hp_MS-FliF.pdb (#66.37), Hp_MS-FliF.pdb (#66.38), Hp_MS-FliF.pdb
(#66.39), Hp_MS-FliF.pdb (#66.40), Hp_MS-FliF.pdb (#66.41), Hp_MS-FliF.pdb
(#66.42), Hp_MS-FliF.pdb (#66.43), Hp_MS-FliF.pdb (#66.44), Hp_MS-FliF.pdb
(#66.45), Hp_MS-FliF.pdb (#66.46), Hp_MS-FliF.pdb (#66.47), Hp_MS-FliF.pdb
(#66.48), Hp_MS-FliF.pdb (#66.49), Hp_MS-FliF.pdb (#66.50), Hp_MS-FliF.pdb
(#66.51), Hp_MS-FliF.pdb (#66.52), Hp_MS-FliF.pdb (#66.53), Hp_MS-FliF.pdb
(#66.54), Hp_MS-FliF.pdb (#66.55), Hp_MS-FliF.pdb (#66.56), Hp_MS-FliF.pdb
(#66.57), Hp_MS-FliF.pdb (#66.58), Hp_MS-FliF.pdb (#66.59), Hp_MS-FliF.pdb
(#66.60), Hp_MS-FliF.pdb (#66.61), Hp_MS-FliF.pdb (#66.62), Hp_MS-FliF.pdb
(#66.63), Hp_MS-FliF.pdb (#66.64), Hp_MS-FliF.pdb (#66.65), Hp_MS-FliF.pdb
(#66.66), Hp_MS-FliF.pdb (#66.67), Hp_MS-FliF.pdb (#66.68), Hp_MS-FliF.pdb
(#66.69), Hp_MS-FliF.pdb (#66.70), Hp_MS-FliF.pdb (#66.71), Hp_MS-FliF.pdb
(#66.72), Hp_MS-FliF.pdb (#66.73), Hp_MS-FliF.pdb (#66.74), Hp_MS-FliF.pdb
(#66.75), Hp_MS-FliF.pdb (#66.76), Hp_MS-FliF.pdb (#66.77), Hp_MS-FliF.pdb
(#66.78), Hp_MS-FliF.pdb (#66.79), Hp_MS-FliF.pdb (#66.80), Hp_MS-FliF.pdb
(#66.81) to map New_FliF.mrc gaussian (#479) using 112125 atoms
average map value = 0.01434, steps = 44
shifted from previous position = 0.0334
rotated from previous position = 0.0113 degrees
atoms outside contour = 58206, contour level = 0.011509
Position of Hp_MS-FliF.pdb (#66.1) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.2) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.3) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.4) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.5) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.6) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.7) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.8) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.9) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.10) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.11) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.12) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.13) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.14) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.15) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.16) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.17) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.18) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.19) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.20) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.21) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.22) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.23) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.24) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.25) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00003228 -0.00007975 1.00000000
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Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.26) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.27) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.28) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.29) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.30) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.31) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.32) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.33) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.34) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.35) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.36) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.37) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.38) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.39) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.40) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.41) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.42) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.43) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.44) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.45) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.46) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.47) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.48) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.49) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.50) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.51) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.52) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.53) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.54) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.55) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.56) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.57) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.58) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.59) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.60) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.61) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.62) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.63) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.64) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.65) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.66) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.67) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.68) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.69) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.70) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.71) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.72) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.73) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.74) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.75) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.76) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.77) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.78) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.79) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.80) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
Position of Hp_MS-FliF.pdb (#66.81) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50696711 -0.86196538 -0.00011739 1003.58251100
0.86196539 -0.50696710 -0.00009236 69.30120290
0.00002010 -0.00014801 0.99999997 -178.47633232
Axis -0.00003228 -0.00007975 1.00000000
Axis point 481.97275758 321.65984305 0.00000000
Rotation angle (degrees) 120.46202145
Shift along axis -178.51425455
> fitmap #66 inMap #479
Fit molecules Hp_MS-FliF.pdb (#66.1), Hp_MS-FliF.pdb (#66.2), Hp_MS-FliF.pdb
(#66.3), Hp_MS-FliF.pdb (#66.4), Hp_MS-FliF.pdb (#66.5), Hp_MS-FliF.pdb
(#66.6), Hp_MS-FliF.pdb (#66.7), Hp_MS-FliF.pdb (#66.8), Hp_MS-FliF.pdb
(#66.9), Hp_MS-FliF.pdb (#66.10), Hp_MS-FliF.pdb (#66.11), Hp_MS-FliF.pdb
(#66.12), Hp_MS-FliF.pdb (#66.13), Hp_MS-FliF.pdb (#66.14), Hp_MS-FliF.pdb
(#66.15), Hp_MS-FliF.pdb (#66.16), Hp_MS-FliF.pdb (#66.17), Hp_MS-FliF.pdb
(#66.18), Hp_MS-FliF.pdb (#66.19), Hp_MS-FliF.pdb (#66.20), Hp_MS-FliF.pdb
(#66.21), Hp_MS-FliF.pdb (#66.22), Hp_MS-FliF.pdb (#66.23), Hp_MS-FliF.pdb
(#66.24), Hp_MS-FliF.pdb (#66.25), Hp_MS-FliF.pdb (#66.26), Hp_MS-FliF.pdb
(#66.27), Hp_MS-FliF.pdb (#66.28), Hp_MS-FliF.pdb (#66.29), Hp_MS-FliF.pdb
(#66.30), Hp_MS-FliF.pdb (#66.31), Hp_MS-FliF.pdb (#66.32), Hp_MS-FliF.pdb
(#66.33), Hp_MS-FliF.pdb (#66.34), Hp_MS-FliF.pdb (#66.35), Hp_MS-FliF.pdb
(#66.36), Hp_MS-FliF.pdb (#66.37), Hp_MS-FliF.pdb (#66.38), Hp_MS-FliF.pdb
(#66.39), Hp_MS-FliF.pdb (#66.40), Hp_MS-FliF.pdb (#66.41), Hp_MS-FliF.pdb
(#66.42), Hp_MS-FliF.pdb (#66.43), Hp_MS-FliF.pdb (#66.44), Hp_MS-FliF.pdb
(#66.45), Hp_MS-FliF.pdb (#66.46), Hp_MS-FliF.pdb (#66.47), Hp_MS-FliF.pdb
(#66.48), Hp_MS-FliF.pdb (#66.49), Hp_MS-FliF.pdb (#66.50), Hp_MS-FliF.pdb
(#66.51), Hp_MS-FliF.pdb (#66.52), Hp_MS-FliF.pdb (#66.53), Hp_MS-FliF.pdb
(#66.54), Hp_MS-FliF.pdb (#66.55), Hp_MS-FliF.pdb (#66.56), Hp_MS-FliF.pdb
(#66.57), Hp_MS-FliF.pdb (#66.58), Hp_MS-FliF.pdb (#66.59), Hp_MS-FliF.pdb
(#66.60), Hp_MS-FliF.pdb (#66.61), Hp_MS-FliF.pdb (#66.62), Hp_MS-FliF.pdb
(#66.63), Hp_MS-FliF.pdb (#66.64), Hp_MS-FliF.pdb (#66.65), Hp_MS-FliF.pdb
(#66.66), Hp_MS-FliF.pdb (#66.67), Hp_MS-FliF.pdb (#66.68), Hp_MS-FliF.pdb
(#66.69), Hp_MS-FliF.pdb (#66.70), Hp_MS-FliF.pdb (#66.71), Hp_MS-FliF.pdb
(#66.72), Hp_MS-FliF.pdb (#66.73), Hp_MS-FliF.pdb (#66.74), Hp_MS-FliF.pdb
(#66.75), Hp_MS-FliF.pdb (#66.76), Hp_MS-FliF.pdb (#66.77), Hp_MS-FliF.pdb
(#66.78), Hp_MS-FliF.pdb (#66.79), Hp_MS-FliF.pdb (#66.80), Hp_MS-FliF.pdb
(#66.81) to map New_FliF.mrc gaussian (#479) using 112125 atoms
average map value = 0.01434, steps = 52
shifted from previous position = 0.0362
rotated from previous position = 0.00534 degrees
atoms outside contour = 58199, contour level = 0.011509
Position of Hp_MS-FliF.pdb (#66.1) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.2) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.3) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.4) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.5) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.6) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.7) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.8) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.9) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.10) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.11) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.12) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.13) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.14) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.15) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.16) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.17) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.18) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.19) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.20) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.21) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.22) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.23) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.24) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.25) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.26) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.27) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.28) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.29) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.30) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.31) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.32) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.33) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.34) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.35) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.36) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.37) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.38) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.39) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.40) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.41) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.42) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.43) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.44) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.45) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.46) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.47) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.48) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.49) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.50) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.51) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.52) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.53) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.54) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.55) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.56) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.57) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.58) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.59) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.60) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.61) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.62) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.63) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.64) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.65) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.66) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.67) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.68) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.69) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.70) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.71) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.72) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.73) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.74) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.75) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.76) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.77) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.78) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.79) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.80) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
Position of Hp_MS-FliF.pdb (#66.81) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50688778 -0.86201203 -0.00013130 1003.58132044
0.86201204 -0.50688777 -0.00009845 69.30100764
0.00001831 -0.00016309 0.99999997 -178.44013373
Axis -0.00003749 -0.00008678 1.00000000
Axis point 481.96999630 321.68915788 0.00000000
Rotation angle (degrees) 120.45674859
Shift along axis -178.48377349
> fitmap #66 inMap #479
Fit molecules Hp_MS-FliF.pdb (#66.1), Hp_MS-FliF.pdb (#66.2), Hp_MS-FliF.pdb
(#66.3), Hp_MS-FliF.pdb (#66.4), Hp_MS-FliF.pdb (#66.5), Hp_MS-FliF.pdb
(#66.6), Hp_MS-FliF.pdb (#66.7), Hp_MS-FliF.pdb (#66.8), Hp_MS-FliF.pdb
(#66.9), Hp_MS-FliF.pdb (#66.10), Hp_MS-FliF.pdb (#66.11), Hp_MS-FliF.pdb
(#66.12), Hp_MS-FliF.pdb (#66.13), Hp_MS-FliF.pdb (#66.14), Hp_MS-FliF.pdb
(#66.15), Hp_MS-FliF.pdb (#66.16), Hp_MS-FliF.pdb (#66.17), Hp_MS-FliF.pdb
(#66.18), Hp_MS-FliF.pdb (#66.19), Hp_MS-FliF.pdb (#66.20), Hp_MS-FliF.pdb
(#66.21), Hp_MS-FliF.pdb (#66.22), Hp_MS-FliF.pdb (#66.23), Hp_MS-FliF.pdb
(#66.24), Hp_MS-FliF.pdb (#66.25), Hp_MS-FliF.pdb (#66.26), Hp_MS-FliF.pdb
(#66.27), Hp_MS-FliF.pdb (#66.28), Hp_MS-FliF.pdb (#66.29), Hp_MS-FliF.pdb
(#66.30), Hp_MS-FliF.pdb (#66.31), Hp_MS-FliF.pdb (#66.32), Hp_MS-FliF.pdb
(#66.33), Hp_MS-FliF.pdb (#66.34), Hp_MS-FliF.pdb (#66.35), Hp_MS-FliF.pdb
(#66.36), Hp_MS-FliF.pdb (#66.37), Hp_MS-FliF.pdb (#66.38), Hp_MS-FliF.pdb
(#66.39), Hp_MS-FliF.pdb (#66.40), Hp_MS-FliF.pdb (#66.41), Hp_MS-FliF.pdb
(#66.42), Hp_MS-FliF.pdb (#66.43), Hp_MS-FliF.pdb (#66.44), Hp_MS-FliF.pdb
(#66.45), Hp_MS-FliF.pdb (#66.46), Hp_MS-FliF.pdb (#66.47), Hp_MS-FliF.pdb
(#66.48), Hp_MS-FliF.pdb (#66.49), Hp_MS-FliF.pdb (#66.50), Hp_MS-FliF.pdb
(#66.51), Hp_MS-FliF.pdb (#66.52), Hp_MS-FliF.pdb (#66.53), Hp_MS-FliF.pdb
(#66.54), Hp_MS-FliF.pdb (#66.55), Hp_MS-FliF.pdb (#66.56), Hp_MS-FliF.pdb
(#66.57), Hp_MS-FliF.pdb (#66.58), Hp_MS-FliF.pdb (#66.59), Hp_MS-FliF.pdb
(#66.60), Hp_MS-FliF.pdb (#66.61), Hp_MS-FliF.pdb (#66.62), Hp_MS-FliF.pdb
(#66.63), Hp_MS-FliF.pdb (#66.64), Hp_MS-FliF.pdb (#66.65), Hp_MS-FliF.pdb
(#66.66), Hp_MS-FliF.pdb (#66.67), Hp_MS-FliF.pdb (#66.68), Hp_MS-FliF.pdb
(#66.69), Hp_MS-FliF.pdb (#66.70), Hp_MS-FliF.pdb (#66.71), Hp_MS-FliF.pdb
(#66.72), Hp_MS-FliF.pdb (#66.73), Hp_MS-FliF.pdb (#66.74), Hp_MS-FliF.pdb
(#66.75), Hp_MS-FliF.pdb (#66.76), Hp_MS-FliF.pdb (#66.77), Hp_MS-FliF.pdb
(#66.78), Hp_MS-FliF.pdb (#66.79), Hp_MS-FliF.pdb (#66.80), Hp_MS-FliF.pdb
(#66.81) to map New_FliF.mrc gaussian (#479) using 112125 atoms
average map value = 0.01434, steps = 52
shifted from previous position = 0.0159
rotated from previous position = 0.002 degrees
atoms outside contour = 58197, contour level = 0.011509
Position of Hp_MS-FliF.pdb (#66.1) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.2) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.3) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.4) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.5) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.6) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.7) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.8) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.9) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.10) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.11) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.12) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.13) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.14) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.15) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.16) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.17) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.18) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.19) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.20) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.21) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.22) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.23) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.24) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.25) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.26) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.27) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.28) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.29) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.30) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.31) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.32) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.33) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.34) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.35) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.36) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.37) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.38) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.39) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.40) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.41) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.42) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.43) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.44) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.45) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.46) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.47) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.48) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.49) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.50) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.51) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
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0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.52) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.53) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.54) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.55) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.56) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.57) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.58) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.59) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.60) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.61) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.62) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.63) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.64) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.65) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.66) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.67) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.68) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.69) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.70) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.71) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.72) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.73) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.74) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.75) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.76) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.77) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.78) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.79) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.80) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
Position of Hp_MS-FliF.pdb (#66.81) relative to New_FliF.mrc gaussian (#479)
coordinates:
Matrix rotation and translation
-0.50691578 -0.86199556 -0.00013844 1003.57627378
0.86199557 -0.50691577 -0.00010881 69.29741296
0.00002362 -0.00017449 0.99999996 -178.42499043
Axis -0.00003810 -0.00009400 0.99999999
Axis point 481.96956236 321.67442443 0.00000000
Rotation angle (degrees) 120.45861007
Shift along axis -178.46973857
> view temp4
> hide #!512 models
> show #!512 models
> hide #!512 models
> hide #!479 models
> hide #!481 models
> show #!481 models
> select subtract #66
Nothing selected
> color #66 #5da36dff models
> select add #66
112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 121 models
selected
> hide sel cartoons
> show sel surfaces
> select subtract #66
81 models selected
> color #66 #75a37cff models
> color #66 #69926fff models
> color #66 #68916eff models
> color #66 #5e915fff models
> color #66 #609151ff models
> color #66 #529150ff models
> color #66 #4b854aff models
> color #66 #4a8248ff models
> view temp4
[Repeated 1 time(s)]
> view name temp5
> movie record
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -2 120 models #259#63#66 center #481
> turn y -2 120 models #52#65 center #481
> turn y 12 120 models #492.2 center #492.2
> turn y 12 120 models #492.3 center #492.3
> turn y 12 120 models #492.4 center #492.4
> turn y 12 120 models #492.5 center #492.5
> turn y 12 120 models #492.6 center #492.6
> turn y 12 120 models #492.7 center #492.7
> turn y 12 120 models #492.8 center #492.8
> turn y 12 120 models #492.9 center #492.9
> turn y 12 120 models #492.10 center #492.10
> turn y 12 120 models #492.11 center #492.11
> turn y 12 120 models #492.12 center #492.12
> turn y 12 120 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y -2 120 models #259#63#479 center #481
> turn y -2 120 models #52#65 center #481
> turn y 12 120 models #492.2 center #492.2
> turn y 12 120 models #492.3 center #492.3
> turn y 12 120 models #492.4 center #492.4
> turn y 12 120 models #492.5 center #492.5
> turn y 12 120 models #492.6 center #492.6
> turn y 12 120 models #492.7 center #492.7
> turn y 12 120 models #492.8 center #492.8
> turn y 12 120 models #492.9 center #492.9
> turn y 12 120 models #492.10 center #492.10
> turn y 12 120 models #492.11 center #492.11
> turn y 12 120 models #492.12 center #492.12
> turn y 12 120 models #492.13 center #492.13
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test1.mov
Movie saved to /Users/shoichi/Desktop/Hp_test1.mov
> lighting soft
> select add #52
114468 atoms, 116060 bonds, 18 pseudobonds, 15371 residues, 2 models selected
> select add #53
213710 atoms, 216576 bonds, 70 pseudobonds, 28761 residues, 4 models selected
> hide sel atoms
> hide sel cartoons
> hide sel surfaces
> show sel surfaces
> select subtract #52
99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 131 models selected
> select subtract #53
52 models selected
> select add #53
99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected
> select subtract #53
52 models selected
> hide #!53 models
> show #!53 models
> select add #65
195294 atoms, 198198 bonds, 26532 residues, 1 model selected
> hide sel atoms
> show sel surfaces
> select subtract #65
66 models selected
> show #!512 models
> show temp4
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> save /Users/shoichi/Desktop/Hp-motor.png supersample 2 transparentBackground
> true
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting soft
> color #313 #dbdbdb80 models
> color #316 #dbdbdb80 models
> save /Users/shoichi/Desktop/Hp-motor.png supersample 2 transparentBackground
> true
> color #313 #dbdbdbb3 models
> color #316 #dbdbdbb3 models
> save /Users/shoichi/Desktop/Hp-motor.png supersample 2 transparentBackground
> true
> show #!484 models
> hide #!484 models
> show #!484 models
> volume #484 120,0,0,239,239,239
Expected a keyword
> volume #484 0,0,0,239,239,239
Expected a keyword
Must specify 6 comma-separated integers, got #484
> lighting simple
Must specify 6 comma-separated integers, got #484
Must specify 6 comma-separated integers, got #484
> volume #484 region 120,0,0,239,239,239
> color #484 #dbdbdb00 models
> color #484 #dbdbdbb3 models
> lighting soft
> view name temp5
> turn x 90
> hide #!50.3 models
> lighting simple
> hide #!14 models
> show #!14 models
> hide #!4 models
> hide #!486.3 models
> hide #!488.3 models
> hide #!492.2 models
> hide #!493.2 models
> hide #!494.2 models
> hide #!501.3 models
> hide #!502.3 models
> turn x 90
[Repeated 2 time(s)]
> save /Users/shoichi/Movie_Updated6-Nov-32023.cxs includeMaps true
> save /Users/shoichi/Desktop/Movie_Updated6-Nov-32023.cxs includeMaps true
> lighting soft
> view temp5
> view temp4
> view name temp5
> lighting simple
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> hide #!63 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-seminar/2023/RIP_2023/PDB/7amy.pdb
7amy.pdb title:
Nonameric cytoplasmic domain of FLHA from vibrio parahaemolyticus [more
info...]
Chain information for 7amy.pdb #67
---
Chain | Description
A B C D E F G H I | flagellar biosynthesis protein FLHA
> select add #67
24849 atoms, 25254 bonds, 3177 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> view matrix models #67,1,0,0,26.605,0,1,0,369.07,0,0,1,-55.79
> view matrix models #67,1,0,0,347.56,0,1,0,355.55,0,0,1,-81.416
> view matrix models #67,1,0,0,328.74,0,1,0,358.91,0,0,1,136.72
> view matrix models #67,1,0,0,360.15,0,1,0,360.85,0,0,1,131.42
> ui tool show "Fit in Map"
> hide #!481 models
> show #!481 models
> fitmap #67 inMap #481
Fit molecule 7amy.pdb (#67) to map New_FlhA.mrc gaussian (#481) using 24849
atoms
average map value = 0.01238, steps = 564
shifted from previous position = 7.94
rotated from previous position = 6.04 degrees
atoms outside contour = 1806, contour level = 0.0031594
Position of 7amy.pdb (#67) relative to New_FlhA.mrc gaussian (#481)
coordinates:
Matrix rotation and translation
0.99810968 0.06144665 -0.00116991 84.42603438
-0.06144790 0.99810972 -0.00106712 105.75154700
0.00110213 0.00113700 0.99999875 -33.02728710
Axis 0.01792911 -0.01848156 -0.99966843
Axis point 1771.09101404 -1309.98293724 0.00000000
Rotation angle (degrees) 3.52405877
Shift along axis 32.57556695
> fitmap #67 inMap #481
Fit molecule 7amy.pdb (#67) to map New_FlhA.mrc gaussian (#481) using 24849
atoms
average map value = 0.01238, steps = 44
shifted from previous position = 0.0277
rotated from previous position = 0.445 degrees
atoms outside contour = 1806, contour level = 0.0031594
Position of 7amy.pdb (#67) relative to New_FlhA.mrc gaussian (#481)
coordinates:
Matrix rotation and translation
0.99760280 0.06919151 -0.00108672 83.16064232
-0.06919237 0.99760304 -0.00077015 107.12723288
0.00103082 0.00084350 0.99999911 -32.96480844
Axis 0.01165852 -0.01529912 -0.99981499
Axis point 1594.92484377 -1141.19271230 0.00000000
Rotation angle (degrees) 3.96831156
Shift along axis 32.28928799
> fitmap #67 inMap #481
Fit molecule 7amy.pdb (#67) to map New_FlhA.mrc gaussian (#481) using 24849
atoms
average map value = 0.01238, steps = 40
shifted from previous position = 0.0411
rotated from previous position = 0.607 degrees
atoms outside contour = 1797, contour level = 0.0031594
Position of 7amy.pdb (#67) relative to New_FlhA.mrc gaussian (#481)
coordinates:
Matrix rotation and translation
0.99681336 0.07975453 -0.00152789 81.50831468
-0.07975557 0.99681425 -0.00062871 109.04765422
0.00147288 0.00074856 0.99999864 -33.02654649
Axis 0.00863253 -0.01880835 -0.99978584
Axis point 1413.17219668 -962.09748118 0.00000000
Rotation angle (degrees) 4.57546824
Shift along axis 31.67209025
> fitmap #67 inMap #481
Fit molecule 7amy.pdb (#67) to map New_FlhA.mrc gaussian (#481) using 24849
atoms
average map value = 0.01238, steps = 28
shifted from previous position = 0.0319
rotated from previous position = 0.218 degrees
atoms outside contour = 1801, contour level = 0.0031594
Position of 7amy.pdb (#67) relative to New_FlhA.mrc gaussian (#481)
coordinates:
Matrix rotation and translation
0.99650491 0.08352439 -0.00128232 80.87218573
-0.08352485 0.99650565 -0.00030532 109.70810009
0.00125233 0.00041136 0.99999913 -32.95863815
Axis 0.00428974 -0.01517120 -0.99987571
Axis point 1357.28860181 -909.82550600 0.00000000
Rotation angle (degrees) 4.79178705
Shift along axis 31.63705907
> hide sel cartoons
> show sel surfaces
> color #67 #929292ff
> hide #!481 models
> view temp5
> select subtract #67
9 models selected
> show #!63 models
> lighting soft
> movie record
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y -2 120 models #259#63#66 center #481
> turn y -2 120 models #52#65 center #481
> turn y 12 120 models #492.2 center #492.2
> turn y 12 120 models #492.3 center #492.3
> turn y 12 120 models #492.4 center #492.4
> turn y 12 120 models #492.5 center #492.5
> turn y 12 120 models #492.6 center #492.6
> turn y 12 120 models #492.7 center #492.7
> turn y 12 120 models #492.8 center #492.8
> turn y 12 120 models #492.9 center #492.9
> turn y 12 120 models #492.10 center #492.10
> turn y 12 120 models #492.11 center #492.11
> turn y 12 120 models #492.12 center #492.12
> turn y 12 120 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y -2 120 models #259#63#479 center #481
> turn y -2 120 models #52#65 center #481
> turn y 12 120 models #492.2 center #492.2
> turn y 12 120 models #492.3 center #492.3
> turn y 12 120 models #492.4 center #492.4
> turn y 12 120 models #492.5 center #492.5
> turn y 12 120 models #492.6 center #492.6
> turn y 12 120 models #492.7 center #492.7
> turn y 12 120 models #492.8 center #492.8
> turn y 12 120 models #492.9 center #492.9
> turn y 12 120 models #492.10 center #492.10
> turn y 12 120 models #492.11 center #492.11
> turn y 12 120 models #492.12 center #492.12
> turn y 12 120 models #492.13 center #492.13
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test1.mov
Movie saved to /Users/shoichi/Desktop/Hp_test1.mov
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> view temp4
> color #313 #dbdbdb66 models
> color #313 #dbdbdb4d models
> color #316 #dbdbdb4d models
> color #484 #dbdbdb4d models
> movie record
> View temp2; wait 10
Unknown command: View temp2; wait 10
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y 2 60 models #259#63#66 center #481
> turn y 2 60 models #52#65 center #481
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y 2 120 models #259#63#479 center #481
> turn y 2 120 models #52#65 center #481
> turn y -12 120 models #492.2 center #492.2
> turn y -12 120 models #492.3 center #492.3
> turn y -12 120 models #492.4 center #492.4
> turn y -12 120 models #492.5 center #492.5
> turn y -12 120 models #492.6 center #492.6
> turn y -12 120 models #492.7 center #492.7
> turn y -12 120 models #492.8 center #492.8
> turn y -12 120 models #492.9 center #492.9
> turn y -12 120 models #492.10 center #492.10
> turn y -12 120 models #492.11 center #492.11
> turn y -12 120 models #492.12 center #492.12
> turn y -12 120 models #492.13 center #492.13
> wait 120
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test1.mov
Movie saved to /Users/shoichi/Desktop/Hp_test1.mov
> save /Users/shoichi/Desktop/Movie_Updated7-Nov-32023.cxs includeMaps true
——— End of log from Sat Nov 4 13:13:32 2023 ———
opened ChimeraX session
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> view name temp5
> movie record
> View temp5; wait 30
Unknown command: View temp5; wait 30
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y 2 60 models #259#63#66 center #481;
Invalid "center" argument: Center argument has no object bounds
> turn y 2 60 models #52#65 center #481;
Invalid "center" argument: Center argument has no object bounds
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y 2 60 models #259#63#479 center #481;
Invalid "center" argument: Center argument has no object bounds
> turn y 2 60 models #52#65 center #481;
Invalid "center" argument: Center argument has no object bounds
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test2.mov
Movie saved to /Users/shoichi/Desktop/Hp_test2.mov
> View temp5
Unknown command: View temp5
> View temp4
Unknown command: View temp4
> view temp5
> view temp4
> view name temp5
> lighting simple
> hide #!65 models
> show #!65 models
> hide #!67 models
> show #!67 models
> turn y 2 60 models #259#63#66 center #67
> view temp5
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> lighting soft
> movie record
> view temp5
> wait 30
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y 2 60 models #259#63#66 center #67
> turn y 2 60 models #52#65 center #67
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y 2 60 models #259#63#479 center #67
> turn y 2 60 models #52#65 center #67
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test2.mov
Movie saved to /Users/shoichi/Desktop/Hp_test2.mov
> save /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated7-Nov-32023.cxs includeMaps true
——— End of log from Sat Nov 4 15:06:51 2023 ———
opened ChimeraX session
> view temp5
> color #513 #9a9a9aff models
> color #513 #868686ff models
> color #513 grey models
> color #513 #717171ff models
> color #513 #6c6c6cff models
> color #513 #727272ff models
> color #312 #727272ff models
> color #16 #727272ff models
> movie record
> view temp5
> wait 30
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y 2 60 models #259#63#66 center #67
> turn y 2 60 models #52#65 center #67
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y 2 60 models #259#63#66 center #67
> turn y 2 60 models #52#65 center #67
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test2.mov
Movie saved to /Users/shoichi/Desktop/Hp_test2.mov
> hide #!4-14#!50#!492-494#!486#!488#!501-502#!504 models
> movie record
> view temp5
> wait 30
> crossfade
> show #!504 models
> wait 50
> crossfade
> show #!50 models
> wait 50
> crossfade
> show #!492#!493#!494 models
> wait 50
> turn y 2 60 models #259#63#66 center #67
> turn y 2 60 models #52#65 center #67
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> show #!4-14#!486#!488#!501#!502 models
> turn y 2 60 models #259#63#66 center #67
> turn y 2 60 models #52#65 center #67
> turn y -12 60 models #492.2 center #492.2
> turn y -12 60 models #492.3 center #492.3
> turn y -12 60 models #492.4 center #492.4
> turn y -12 60 models #492.5 center #492.5
> turn y -12 60 models #492.6 center #492.6
> turn y -12 60 models #492.7 center #492.7
> turn y -12 60 models #492.8 center #492.8
> turn y -12 60 models #492.9 center #492.9
> turn y -12 60 models #492.10 center #492.10
> turn y -12 60 models #492.11 center #492.11
> turn y -12 60 models #492.12 center #492.12
> turn y -12 60 models #492.13 center #492.13
> wait 60
> movie encode quality high framerate 10 output
> /Users/shoichi/Desktop/Hp_test3.mov
Movie saved to /Users/shoichi/Desktop/Hp_test3.mov
> save /Volumes/Backup-95/Chimera-2023/For-
> RIPtalk/Movie_Updated7-Nov-32023.cxs includeMaps true
——— End of log from Sat Nov 4 16:03:20 2023 ———
opened ChimeraX session
> save /Volumes/Backup-95/Chimera-2023/For-
> Structural_Seminar_2024/H.pylori_Movie_low-resolution.cxs includeMaps true
> show #!1 models
> hide #!1 models
> save /Volumes/Backup-95/Chimera-2023/For-
> Structural_Seminar_2024/H.pylori_Movie_Hight-resolution_model.cxs
> save /Volumes/Backup-95/Chimera-2023/For-
> Structural_Seminar_2024/H.pylori_Movie_Hight-resolution_model.cxs
> includeMaps true
——— End of log from Wed Mar 13 09:49:54 2024 ———
opened ChimeraX session
> hide #!513 models
> show #!513 models
> hide #!513 models
> hide #!512 models
> hide #!504 models
> hide #!502 models
> hide #!501 models
> hide #!494 models
> hide #!493 models
> hide #!492 models
> hide #!488 models
> hide #!486 models
> hide #!484 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> show #!8 models
> hide #!10 models
> hide #!16 models
> hide #!34 models
> hide #!50 models
> hide #!52 models
> hide #!53 models
> hide #!61 models
> hide #!63 models
> hide #!65 models
> hide #!66 models
> hide #!67 models
> hide #!259 models
> hide #!312 models
> hide #!313 models
> hide #!316 models
> hide #!8 models
> hide #!9 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> show #!356 models
> hide #!356 models
> show #!359 models
> hide #!359 models
> show #!373 models
> hide #!373 models
> show #!366 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/1x_Cage-units.mrc
Opened 1x_Cage-units.mrc as #68, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Drag select of 68 1x_Cage-units.mrc
> ui mousemode right "translate selected models"
> view matrix models #68,1,0,0,842.1,0,1,0,534.28,0,0,1,931.62
> view matrix models #68,1,0,0,941.43,0,1,0,677.95,0,0,1,456.17
> surface dust #68 size 12.6
> view matrix models #68,1,0,0,814.18,0,1,0,963.57,0,0,1,551.73
> view matrix models #68,1,0,0,602.9,0,1,0,1045.1,0,0,1,586.06
> view matrix models #68,1,0,0,502.09,0,1,0,862.27,0,0,1,536.17
> hide #!366 models
> view matrix models #68,1,0,0,468.27,0,1,0,879.19,0,0,1,551.18
> ui mousemode right "rotate selected models"
> view matrix models
> #68,0.63172,-0.77422,-0.03886,473.47,0.76394,0.61325,0.20081,905.38,-0.13164,-0.15654,0.97886,550.81
> view matrix models
> #68,0.58635,-0.78247,0.20963,487.31,0.78846,0.61063,0.073895,898.43,-0.18583,0.12196,0.97498,545.76
> view matrix models
> #68,0.72888,-0.6673,0.15309,483.98,0.67393,0.73871,0.011304,891.59,-0.12063,0.094929,0.98815,547.67
> view matrix models
> #68,0.45599,-0.86703,0.20084,486.57,0.8665,0.48401,0.12211,904.01,-0.20308,0.11835,0.97198,545.44
> ui mousemode right "translate selected models"
> view matrix models
> #68,0.45599,-0.86703,0.20084,506.19,0.8665,0.48401,0.12211,793.3,-0.20308,0.11835,0.97198,548.25
> view matrix models
> #68,0.45599,-0.86703,0.20084,529.11,0.8665,0.48401,0.12211,772.04,-0.20308,0.11835,0.97198,544.47
> ui tool show "Fit in Map"
> fitmap #68 inMap #14
Fit map 1x_Cage-units.mrc in map Cage-top-Model2.mrc copy using 110331 points
correlation = 0.675, correlation about mean = 0.5311, overlap = 3.619e+04
steps = 224, shift = 44.8, angle = 24.5 degrees
Position of 1x_Cage-units.mrc (#68) relative to Cage-top-Model2.mrc copy (#14)
coordinates:
Matrix rotation and translation
0.99957092 0.01954565 -0.02181633 280.72932082
-0.02006893 0.99950978 -0.02403017 336.16766971
0.02133595 0.02445770 0.99947317 423.45161946
Axis 0.63763912 -0.56747362 -0.52095110
Axis point 0.00000000 -12175.85564800 8750.60260496
Rotation angle (degrees) 2.17899098
Shift along axis -232.35987266
> fitmap #68 inMap #14
Fit map 1x_Cage-units.mrc in map Cage-top-Model2.mrc copy using 110331 points
correlation = 0.6752, correlation about mean = 0.5309, overlap = 3.62e+04
steps = 44, shift = 0.173, angle = 0.121 degrees
Position of 1x_Cage-units.mrc (#68) relative to Cage-top-Model2.mrc copy (#14)
coordinates:
Matrix rotation and translation
0.99961112 0.01800203 -0.02129631 280.79496647
-0.01848523 0.99957109 -0.02271444 335.96028891
0.02087827 0.02309928 0.99951515 423.55678089
Axis 0.63477826 -0.58435561 -0.50555423
Axis point 0.00000000 -13063.96932018 9063.44999355
Rotation angle (degrees) 2.06804714
Shift along axis -232.20866223
> fitmap #68 inMap #14
Fit map 1x_Cage-units.mrc in map Cage-top-Model2.mrc copy using 110331 points
correlation = 0.6752, correlation about mean = 0.5309, overlap = 3.62e+04
steps = 44, shift = 0.0172, angle = 0.0147 degrees
Position of 1x_Cage-units.mrc (#68) relative to Cage-top-Model2.mrc copy (#14)
coordinates:
Matrix rotation and translation
0.99960589 0.01811919 -0.02144203 280.80197502
-0.01860941 0.99956482 -0.02288820 335.96465585
0.02101799 0.02327822 0.99950808 423.55752959
Axis 0.63515312 -0.58416086 -0.50530842
Axis point 0.00000000 -12970.49629283 9005.66001717
Rotation angle (degrees) 2.08274473
Shift along axis -231.93233816
> fitmap #68 inMap #14
Fit map 1x_Cage-units.mrc in map Cage-top-Model2.mrc copy using 110331 points
correlation = 0.6752, correlation about mean = 0.5309, overlap = 3.62e+04
steps = 40, shift = 0.0122, angle = 0.0144 degrees
Position of 1x_Cage-units.mrc (#68) relative to Cage-top-Model2.mrc copy (#14)
coordinates:
Matrix rotation and translation
0.99960494 0.01832011 -0.02131537 280.78909866
-0.01880898 0.99955932 -0.02296523 335.97626611
0.02088525 0.02335708 0.99950902 423.55812399
Axis 0.63597278 -0.57938501 -0.50975645
Axis point 0.00000000 -12881.12876854 9023.95973459
Rotation angle (degrees) 2.08708590
Shift along axis -231.99687392
> show #!466 models
> hide #!466 models
> show #!463 models
> hide #!463 models
> show #!446 models
> hide #!446 models
> show #!461 models
> hide #!461 models
> show #!473 models
> show #!474 models
> show #!472 models
> show #!471 models
> hide #!472 models
> show #!472 models
> hide #!472 models
> show #!472 models
> hide #!471 models
> show #!471 models
> hide #!471 models
> show #!113 models
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #69, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #70, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #71, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #72, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened 1x_Cage-units.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown
at step 1, values float32
> volume #68 show
> surface dust #68-86 size 30
> select subtract #68
Nothing selected
> hide #!69 models
> hide #!70 models
> hide #!71 models
> hide #!72 models
> hide #!73 models
> hide #!74 models
> hide #!75 models
> hide #!76 models
> hide #!77 models
> hide #!78 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> hide #!82 models
> hide #!83 models
> hide #!85 models
> hide #!84 models
> hide #!86 models
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_2024.cxs includeMaps true
——— End of log from Tue Jun 11 19:04:10 2024 ———
opened ChimeraX session
> hide #!14 models
> color #68 #ffb2ff4a models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-files/PflA-models-Jian/PflA_model2.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/PDB-files/PflA-models-Jian/PflA_model2.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 LEU A 135 ARG A 137 1 3
Start residue of secondary structure not found: HELIX 2 2 SER A 138 GLU A 155
1 18
Start residue of secondary structure not found: HELIX 3 3 LYS A 159 LYS A 185
1 27
Start residue of secondary structure not found: HELIX 4 4 PHE A 186 GLU A 188
1 3
Start residue of secondary structure not found: HELIX 5 5 PHE A 191 SER A 201
1 11
21 messages similar to the above omitted
End residue of secondary structure not found: HELIX 27 27 LEU A 503 TYR A 512
1 10
Start residue of secondary structure not found: HELIX 28 28 ALA A 513 LEU A
515 1 3
Start residue of secondary structure not found: HELIX 29 29 HIS A 519 LEU A
531 1 13
Start residue of secondary structure not found: HELIX 30 30 TYR A 536 LEU A
544 1 9
End residue of secondary structure not found: HELIX 31 31 ALA A 545 HIS A 547
1 3
Start residue of secondary structure not found: HELIX 32 32 THR A 554 PHE A
564 1 11
Start residue of secondary structure not found: HELIX 33 33 PRO A 572 ALA A
583 1 12
Start residue of secondary structure not found: HELIX 34 34 TYR A 584 ASN A
586 1 3
Start residue of secondary structure not found: HELIX 35 35 ASP A 594 LEU A
596 1 3
Start residue of secondary structure not found: HELIX 36 36 PRO A 604 LYS A
615 1 12
1440 messages similar to the above omitted
Chain information for PflA_model2.pdb #87
---
Chain | Description
A | No description available
> select add #87
6334 atoms, 6457 bonds, 779 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #87,1,0,0,299.61,0,1,0,466.9,0,0,1,-10.734
> view matrix models #87,1,0,0,489.72,0,1,0,411.79,0,0,1,425.59
> view matrix models #87,1,0,0,369.54,0,1,0,571.29,0,0,1,464.01
> view matrix models #87,1,0,0,400.2,0,1,0,578.4,0,0,1,528.16
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.95353,-0.29801,-0.044279,467.07,0.24952,0.86349,-0.43832,534.57,0.16886,0.4069,0.89773,407.85
> view matrix models
> #87,-0.66419,0.58047,0.47107,640.12,0.6131,0.78352,-0.10104,494.05,-0.42774,0.2217,-0.87629,478.74
> ui mousemode right "translate selected models"
> view matrix models
> #87,-0.66419,0.58047,0.47107,626.97,0.6131,0.78352,-0.10104,506.7,-0.42774,0.2217,-0.87629,503.96
> ui mousemode right "rotate selected models"
> view matrix models
> #87,-0.69649,0.51684,0.49777,647.48,0.60902,0.79262,0.029171,511.99,-0.37946,0.32347,-0.86682,474.35
> ui mousemode right "translate selected models"
> view matrix models
> #87,-0.69649,0.51684,0.49777,641.35,0.60902,0.79262,0.029171,511.17,-0.37946,0.32347,-0.86682,483.5
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #87,-0.69649,0.51684,0.49777,632.24,0.60902,0.79262,0.029171,511.92,-0.37946,0.32347,-0.86682,476.91
> ui mousemode right "rotate selected models"
> view matrix models
> #87,-0.77752,0.48272,0.40304,650.73,0.53551,0.84424,0.021951,515.96,-0.32967,0.2329,-0.91492,482.76
> view matrix models
> #87,0.39781,0.059848,-0.91551,436.22,0.47736,0.83866,0.26225,540.35,0.7835,-0.54136,0.30506,473.81
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.39781,0.059848,-0.91551,416.45,0.47736,0.83866,0.26225,538.55,0.7835,-0.54136,0.30506,462.01
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.39781,0.059848,-0.91551,421.94,0.47736,0.83866,0.26225,567.87,0.7835,-0.54136,0.30506,460.38
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.11356,0.37833,-0.91868,414.93,0.47456,0.7917,0.3847,583.76,0.87287,-0.47966,-0.089636,411.03
> ui tool show "Fit in Map"
> fitmap #87 inMap #68
Fit molecule PflA_model2.pdb (#87) to map 1x_Cage-units.mrc (#68) using 6334
atoms
average map value = 4.568, steps = 176
shifted from previous position = 9
rotated from previous position = 60.9 degrees
atoms outside contour = 771, contour level = 0.000178
Position of PflA_model2.pdb (#87) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.63143452 0.77043401 0.08787421 -250.05752054
0.69601387 -0.61307289 0.37377308 25.72419037
0.34184079 -0.17485155 -0.92334815 -117.77823174
Axis -0.90068497 -0.41694059 -0.12217661
Axis point 0.00000000 62.96261079 -52.42039151
Rotation angle (degrees) 162.26832560
Shift along axis 228.88733695
> fitmap #87 inMap #68
Fit molecule PflA_model2.pdb (#87) to map 1x_Cage-units.mrc (#68) using 6334
atoms
average map value = 4.568, steps = 28
shifted from previous position = 0.0527
rotated from previous position = 0.0557 degrees
atoms outside contour = 771, contour level = 0.000178
Position of PflA_model2.pdb (#87) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.63115823 0.77070110 0.08751632 -250.08198045
0.69660254 -0.61283847 0.37306020 25.54418800
0.34115127 -0.17449593 -0.92367038 -117.67871985
Axis -0.90061619 -0.41717686 -0.12187675
Axis point 0.00000000 62.93312712 -52.37957179
Rotation angle (degrees) 162.30260662
Shift along axis 228.91373688
> fitmap #87 inMap #68
Fit molecule PflA_model2.pdb (#87) to map 1x_Cage-units.mrc (#68) using 6334
atoms
average map value = 4.569, steps = 48
shifted from previous position = 0.0636
rotated from previous position = 0.0431 degrees
atoms outside contour = 772, contour level = 0.000178
Position of PflA_model2.pdb (#87) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.63167083 0.77024876 0.08779987 -250.06806832
0.69609031 -0.61338569 0.37311697 25.73109155
0.34124807 -0.17457047 -0.92362054 -117.73351538
Axis -0.90076151 -0.41683699 -0.12196569
Axis point 0.00000000 62.96417426 -52.40588000
Rotation angle (degrees) 162.30117242
Shift along axis 228.88546911
> fitmap #87 inMap #68
Fit molecule PflA_model2.pdb (#87) to map 1x_Cage-units.mrc (#68) using 6334
atoms
average map value = 4.569, steps = 40
shifted from previous position = 0.0155
rotated from previous position = 0.013 degrees
atoms outside contour = 769, contour level = 0.000178
Position of PflA_model2.pdb (#87) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.63153635 0.77034110 0.08795695 -250.05382813
0.69614796 -0.61331498 0.37312563 25.71418562
0.34137932 -0.17441135 -0.92360210 -117.77984247
Axis -0.90072450 -0.41689192 -0.12205125
Axis point 0.00000000 62.96169478 -52.41489751
Rotation angle (degrees) 162.30544410
Shift along axis 228.88474985
> view orient
> sym #87 C18 copies true center #113
Made 18 copies for PflA_model2.pdb symmetry C18
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-files/PflB/PflB_dloop.pdb
Chain information for PflB_dloop.pdb #89
---
Chain | Description
A | No description available
> select subtract #87
Nothing selected
> select add #89
11429 atoms, 11564 bonds, 705 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #89,1,0,0,101.75,0,1,0,478.09,0,0,1,0
> ui mousemode right "rotate selected models"
> view matrix models
> #89,0.041665,-0.85399,0.51861,613.65,0.79149,0.34499,0.50451,136.91,-0.60977,0.38945,0.6903,269.76
> view matrix models
> #89,-0.28358,-0.83036,0.47966,768.58,0.74664,0.12269,0.65382,171.8,-0.60176,0.54355,0.58519,256.66
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.28358,-0.83036,0.47966,777.53,0.74664,0.12269,0.65382,165.37,-0.60176,0.54355,0.58519,261.7
> view matrix models
> #89,-0.28358,-0.83036,0.47966,776.11,0.74664,0.12269,0.65382,182.39,-0.60176,0.54355,0.58519,304.05
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.42341,-0.86594,0.2662,959.55,0.60849,-0.054154,0.79171,246.26,-0.67116,0.4972,0.54985,371.34
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 140
shifted from previous position = 7.91
rotated from previous position = 27.4 degrees
atoms outside contour = 3685, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46054647 0.27272692 0.84469934 -647.71041351
0.45332925 0.74589444 -0.48798982 -226.20202752
-0.76314450 0.60766891 0.21988396 -2.35627877
Axis 0.56071644 0.82283329 0.09242540
Axis point -210.23826195 0.00000000 267.75001047
Rotation angle (degrees) 77.69225603
Shift along axis -549.52621592
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 48
shifted from previous position = 0.0179
rotated from previous position = 0.0312 degrees
atoms outside contour = 3689, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46088787 0.27298856 0.84442857 -647.81961863
0.45325683 0.74564369 -0.48844010 -225.85495842
-0.76298139 0.60785914 0.21992420 -2.51802390
Axis 0.56105243 0.82262327 0.09225579
Axis point -210.52870104 0.00000000 267.67242327
Rotation angle (degrees) 77.68841823
Shift along axis -549.48661691
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.39008,-0.68809,0.61186,705.07,0.54917,0.35952,0.75443,125.86,-0.73909,0.6303,0.23764,506.69
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.40598,-0.67173,0.61965,701.67,0.61788,0.29783,0.72769,133.47,-0.67335,0.67829,0.29413,429.8
> view matrix models
> #89,-0.41231,-0.66508,0.62263,700.32,0.64454,0.27006,0.71528,138.98,-0.64387,0.69623,0.31733,397.82
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.41231,-0.66508,0.62263,700.3,0.64454,0.27006,0.71528,139.06,-0.64387,0.69623,0.31733,398.46
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.41231,-0.66508,0.62263,702.3,0.64454,0.27006,0.71528,139.36,-0.64387,0.69623,0.31733,397.12
> view orient
> sym #89 C18 copies true center #113
Made 18 copies for PflB_dloop.pdb symmetry C18
> show #!471 models
> hide #!90 models
> close #90
> show #89 models
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 96
shifted from previous position = 5.87
rotated from previous position = 8.06 degrees
atoms outside contour = 3688, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46069240 0.27287374 0.84457234 -647.77785632
0.45350581 0.74560178 -0.48827294 -226.00242410
-0.76295150 0.60796209 0.21974325 -2.49420080
Axis 0.56099337 0.82264313 0.09243765
Axis point -210.37861412 0.00000000 267.62151974
Rotation angle (degrees) 77.70068455
Shift along axis -549.54898319
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 48
shifted from previous position = 0.0344
rotated from previous position = 0.0309 degrees
atoms outside contour = 3685, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46036922 0.27274862 0.84478894 -647.68194142
0.45339698 0.74590950 -0.48790388 -226.29163234
-0.76321121 0.60764069 0.21973037 -2.23736742
Axis 0.56063826 0.82288428 0.09244570
Axis point -210.11867980 0.00000000 267.76591697
Rotation angle (degrees) 77.70151525
Shift along axis -549.53393622
> hide #!471 models
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.24474,-0.91305,0.32624,874.67,0.91552,-0.10683,0.38784,329.93,-0.31926,0.3936,0.86206,102.94
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.24474,-0.91305,0.32624,876.3,0.91552,-0.10683,0.38784,336.51,-0.31926,0.3936,0.86206,102.48
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 140
shifted from previous position = 14.6
rotated from previous position = 46.8 degrees
atoms outside contour = 3686, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46096196 0.27246754 0.84455640 -647.72030470
0.45299101 0.74612248 -0.48795531 -226.16778455
-0.76309450 0.60750530 0.22050873 -2.62276276
Axis 0.56069457 0.82285125 0.09239815
Axis point -210.44914890 0.00000000 267.79552525
Rotation angle (degrees) 77.65506492
Shift along axis -549.51804143
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 40
shifted from previous position = 0.00664
rotated from previous position = 0.0526 degrees
atoms outside contour = 3685, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46030245 0.27286832 0.84478668 -647.70104091
0.45337896 0.74588541 -0.48795744 -226.24905065
-0.76326219 0.60761651 0.21962013 -2.14979911
Axis 0.56064072 0.82289075 0.09237315
Axis point -210.11322601 0.00000000 267.79411254
Rotation angle (degrees) 77.70741163
Shift along axis -549.50441181
> ui mousemode right "rotate selected models"
> view matrix models
> #89,0.61625,0.59084,0.52071,-212.38,-0.0809,-0.61019,0.78811,776.7,0.78338,-0.5278,-0.32823,578.07
> view matrix models
> #89,0.3562,0.70333,0.61518,-189.04,-0.15801,-0.60355,0.78151,811.69,0.92095,-0.37558,-0.10385,343.18
> ui mousemode right "translate selected models"
> view matrix models
> #89,0.3562,0.70333,0.61518,-204.42,-0.15801,-0.60355,0.78151,824.55,0.92095,-0.37558,-0.10385,335.5
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.788, steps = 156
shifted from previous position = 10.3
rotated from previous position = 37.9 degrees
atoms outside contour = 4331, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.47834659 -0.48211890 0.73399310 -295.25223777
-0.57244553 -0.80502230 -0.15570869 711.87606580
0.66595093 -0.34568835 -0.66106649 170.41054571
Axis -0.85928549 0.30775744 -0.40855086
Axis point 0.00000000 313.87642165 136.43190678
Rotation angle (degrees) 173.65325860
Shift along axis 403.16974135
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.788, steps = 28
shifted from previous position = 0.0306
rotated from previous position = 0.0791 degrees
atoms outside contour = 4332, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.47876226 -0.48304802 0.73311068 -294.62464854
-0.57295791 -0.80460475 -0.15598205 712.05038512
0.66521117 -0.34536325 -0.66198058 171.07065557
Axis -0.85940987 0.30812726 -0.40801012
Axis point 0.00000000 313.99227007 136.57112704
Rotation angle (degrees) 173.67425322
Shift along axis 402.80690880
> view matrix models
> #89,0.64712,0.71874,0.25428,-159.24,0.3651,-0.58495,0.72425,580.5,0.66928,-0.37584,-0.64094,680.99
> view matrix models
> #89,0.64712,0.71874,0.25428,-179.29,0.3651,-0.58495,0.72425,647.78,0.66928,-0.37584,-0.64094,626.43
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.43559,-0.83897,-0.32618,1221.3,0.23509,-0.45582,0.85846,586.57,-0.8689,0.29725,0.39578,522.31
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.43559,-0.83897,-0.32618,1229,0.23509,-0.45582,0.85846,617.93,-0.8689,0.29725,0.39578,587.37
> view matrix models
> #89,-0.43559,-0.83897,-0.32618,1232.8,0.23509,-0.45582,0.85846,535.99,-0.8689,0.29725,0.39578,593.77
> view matrix models
> #89,-0.43559,-0.83897,-0.32618,1224.7,0.23509,-0.45582,0.85846,535.14,-0.8689,0.29725,0.39578,613.52
> view matrix models
> #89,-0.43559,-0.83897,-0.32618,1227.2,0.23509,-0.45582,0.85846,534.95,-0.8689,0.29725,0.39578,614.33
> view matrix models
> #89,-0.43559,-0.83897,-0.32618,1227.4,0.23509,-0.45582,0.85846,536.06,-0.8689,0.29725,0.39578,614.71
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.533, steps = 128
shifted from previous position = 15.7
rotated from previous position = 19.7 degrees
atoms outside contour = 4734, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.12436133 -0.41685033 0.90042769 -253.88879057
0.14948472 0.90498601 0.39831471 -582.17380668
-0.98091210 0.08506524 0.17485802 316.81330322
Axis -0.15744758 0.94561181 0.28465517
Axis point 80.27548309 0.00000000 433.53261791
Rotation angle (degrees) 84.13973508
Shift along axis -420.35370392
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.533, steps = 44
shifted from previous position = 0.0183
rotated from previous position = 0.249 degrees
atoms outside contour = 4733, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.12105513 -0.41485757 0.90179754 -253.87657695
0.14783788 0.90588160 0.39689097 -581.08303056
-0.98157505 0.08527415 0.17099328 318.96239132
Axis -0.15657706 0.94633194 0.28273571
Axis point 80.39228482 0.00000000 432.79526293
Rotation angle (degrees) 84.32042589
Shift along axis -419.96412619
> view matrix models
> #89,-0.14179,-0.95632,-0.25563,1120.2,0.17551,-0.27843,0.94428,445.87,-0.97421,0.089025,0.20732,837.9
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.26496,-0.93851,-0.22136,1150.8,0.49663,-0.32959,0.80295,394.04,-0.82653,0.10282,0.55342,593.42
> view matrix models
> #89,-0.28497,-0.93207,-0.22369,1158.3,0.52633,-0.3472,0.77617,401.29,-0.8011,0.10345,0.58952,563.77
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.28497,-0.93207,-0.22369,1157.6,0.52633,-0.3472,0.77617,401.78,-0.8011,0.10345,0.58952,564.98
> view matrix models
> #89,-0.28497,-0.93207,-0.22369,1161,0.52633,-0.3472,0.77617,405.02,-0.8011,0.10345,0.58952,566.43
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.533, steps = 128
shifted from previous position = 8.96
rotated from previous position = 24 degrees
atoms outside contour = 4740, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.12517364 -0.41746616 0.90002974 -253.85589047
0.14943072 0.90474911 0.39887276 -582.32094915
-0.98081700 0.08456374 0.17563301 316.58181176
Axis -0.15799118 0.94543007 0.28495749
Axis point 80.24384297 0.00000000 433.81573278
Rotation angle (degrees) 84.10084400
Shift along axis -420.22438598
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.533, steps = 80
shifted from previous position = 0.0178
rotated from previous position = 0.258 degrees
atoms outside contour = 4735, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.12166827 -0.41537118 0.90147855 -253.81938609
0.14801566 0.90566340 0.39732245 -581.28352774
-0.98147245 0.08509140 0.17167194 318.65526349
Axis -0.15689413 0.94617100 0.28309833
Axis point 80.38960210 0.00000000 432.97468208
Rotation angle (degrees) 84.28951673
Shift along axis -419.96007086
> view matrix models
> #89,-0.14187,-0.95618,-0.25609,1125.6,0.17614,-0.27897,0.94401,461.6,-0.97409,0.088822,0.208,832.42
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.022475,-0.88176,-0.47117,1150,0.51517,-0.41412,0.75041,461.77,-0.8568,-0.22587,0.46356,779.12
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.533, steps = 140
shifted from previous position = 18.6
rotated from previous position = 26.1 degrees
atoms outside contour = 4739, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.12466167 -0.41711200 0.90026497 -253.87990972
0.14924372 0.90490255 0.39859459 -582.16396197
-0.98091067 0.08466942 0.17505801 316.86999042
Axis -0.15779060 0.94554966 0.28467169
Axis point 80.25447534 0.00000000 433.68733375
Rotation angle (degrees) 84.12772923
Shift along axis -420.20115432
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.533, steps = 60
shifted from previous position = 0.0112
rotated from previous position = 0.183 degrees
atoms outside contour = 4735, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.12214455 -0.41560937 0.90130435 -253.85244464
0.14835052 0.90554756 0.39746158 -581.45914746
-0.98136273 0.08516121 0.17226356 318.27948537
Axis -0.15693649 0.94607370 0.28339988
Axis point 80.36136473 0.00000000 433.06291878
Rotation angle (degrees) 84.26210581
Shift along axis -420.06412690
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.14213,-0.9561,-0.25625,1118.3,0.17666,-0.27922,0.94384,512.42,-0.97396,0.088882,0.20859,854.1
> ui mousemode right "rotate selected models"
> view matrix models
> #89,0.43397,-0.75126,-0.49727,899.56,0.055683,-0.52853,0.84709,715.19,-0.8992,-0.3953,-0.18754,1214
> view matrix models
> #89,0.13714,0.98446,-0.10971,138.61,0.81079,-0.047938,0.58337,316.85,0.56904,-0.16895,-0.80476,777.05
> ui mousemode right "translate selected models"
> view matrix models
> #89,0.13714,0.98446,-0.10971,119.12,0.81079,-0.047938,0.58337,310.67,0.56904,-0.16895,-0.80476,772.64
> view matrix models
> #89,0.13714,0.98446,-0.10971,124.98,0.81079,-0.047938,0.58337,277.21,0.56904,-0.16895,-0.80476,777.62
> view matrix models
> #89,0.13714,0.98446,-0.10971,130.37,0.81079,-0.047938,0.58337,278.6,0.56904,-0.16895,-0.80476,774.12
> ui mousemode right "rotate selected models"
> view matrix models
> #89,0.43674,0.86972,-0.2299,103.18,0.048303,0.23252,0.97139,311.38,0.89829,-0.43535,0.059541,302.43
> ui mousemode right "translate selected models"
> view matrix models
> #89,0.43674,0.86972,-0.2299,124.79,0.048303,0.23252,0.97139,301.16,0.89829,-0.43535,0.059541,303.88
> view matrix models
> #89,0.43674,0.86972,-0.2299,118.87,0.048303,0.23252,0.97139,305.15,0.89829,-0.43535,0.059541,303.28
> view matrix models
> #89,0.43674,0.86972,-0.2299,114.9,0.048303,0.23252,0.97139,310.79,0.89829,-0.43535,0.059541,298.27
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.33983,-0.92354,-0.17773,1157.6,0.71634,-0.37663,0.58738,450.55,-0.6094,0.072299,0.78956,400.62
> view matrix models
> #89,-0.23365,-0.93337,-0.27246,1161.6,0.82324,-0.339,0.45536,453.77,-0.51738,-0.11791,0.8476,407.22
> view matrix models
> #89,-0.14843,-0.94282,-0.29844,1140.4,0.76712,-0.30022,0.56692,407.36,-0.6241,-0.14479,0.76781,505.53
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.14843,-0.94282,-0.29844,1140.3,0.76712,-0.30022,0.56692,392.89,-0.6241,-0.14479,0.76781,495.72
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 2.533, steps = 172
shifted from previous position = 17.9
rotated from previous position = 40.8 degrees
atoms outside contour = 4738, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.12499095 -0.41732765 0.90011936 -253.86365034
0.14936414 0.90480924 0.39876128 -582.26455328
-0.98085044 0.08460400 0.17542675 316.68474296
Axis -0.15791221 0.94547579 0.28484953
Axis point 80.24970952 0.00000000 433.76575363
Rotation angle (degrees) 84.11031441
Shift along axis -420.22136887
> view matrix models
> #89,-0.1427,-0.95564,-0.25767,1150.8,0.1796,-0.28101,0.94275,468.28,-0.97333,0.088256,0.21174,851.42
> view matrix models
> #89,-0.1427,-0.95564,-0.25767,1087.7,0.1796,-0.28101,0.94275,523.89,-0.97333,0.088256,0.21174,800.43
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.31723,-0.94065,-0.12056,1090.9,0.5793,-0.29286,0.76069,441.56,-0.75085,0.17147,0.63782,454.62
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.31723,-0.94065,-0.12056,1122.4,0.5793,-0.29286,0.76069,366.24,-0.75085,0.17147,0.63782,488.81
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.15493,-0.97991,0.12556,942.73,0.68483,-0.014916,0.72855,223.27,-0.71205,0.19886,0.67338,442.69
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.15493,-0.97991,0.12556,951.28,0.68483,-0.014916,0.72855,228.16,-0.71205,0.19886,0.67338,441
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.396, steps = 216
shifted from previous position = 24.9
rotated from previous position = 38 degrees
atoms outside contour = 3533, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.80187364 -0.53371185 0.26860807 -204.04531227
0.53133758 0.84258032 0.08797017 -590.24079646
-0.27327460 0.07218060 0.95922412 -407.04228596
Axis -0.01321214 0.45342791 0.89119502
Axis point 412.01941948 -550.80346259 0.00000000
Rotation angle (degrees) 36.69391966
Shift along axis -627.68983568
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.396, steps = 156
shifted from previous position = 0.014
rotated from previous position = 0.0303 degrees
atoms outside contour = 3538, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.80161081 -0.53403712 0.26874604 -203.85514337
0.53173993 0.84234463 0.08779600 -590.23864009
-0.27326311 0.07252478 0.95920143 -407.17845930
Axis -0.01277094 0.45326860 0.89128249
Axis point 411.83390705 -549.73086998 0.00000000
Rotation angle (degrees) 36.71890109
Shift along axis -627.84425022
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.396, steps = 60
shifted from previous position = 0.0311
rotated from previous position = 0.0201 degrees
atoms outside contour = 3540, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.80178556 -0.53390925 0.26847868 -203.87973694
0.53157996 0.84244398 0.08781144 -590.20585174
-0.27306159 0.07231194 0.95927489 -407.23255159
Axis -0.01296690 0.45305308 0.89138924
Axis point 412.20906601 -550.14131008 0.00000000
Rotation angle (degrees) 36.70224433
Shift along axis -627.75360116
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.396, steps = 96
shifted from previous position = 0.0284
rotated from previous position = 0.0111 degrees
atoms outside contour = 3534, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.80188161 -0.53379611 0.26841676 -203.93071606
0.53143731 0.84252706 0.08787776 -590.21831827
-0.27305720 0.07217912 0.95928614 -407.16237653
Axis -0.01313630 0.45309444 0.89136573
Axis point 412.33321140 -550.52263897 0.00000000
Rotation angle (degrees) 36.69311715
Shift along axis -627.67632988
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.396, steps = 60
shifted from previous position = 0.0217
rotated from previous position = 0.0255 degrees
atoms outside contour = 3534, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.80204095 -0.53351288 0.26850379 -204.16098829
0.53109261 0.84272460 0.08806733 -590.25570715
-0.27325981 0.07196677 0.95924440 -406.97128802
Axis -0.01347739 0.45349732 0.89115574
Axis point 412.18310072 -551.46708965 0.00000000
Rotation angle (degrees) 36.67800585
Shift along axis -627.60261862
> view matrix models
> #89,-0.40937,-0.91175,-0.033704,1114.4,0.88097,-0.40462,0.2453,513.46,-0.23729,0.070725,0.96886,124.18
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.022771,-0.99922,0.032323,944.32,0.97184,-0.014539,0.2352,320.82,-0.23454,0.036769,0.97141,135.37
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #89,-0.022771,-0.99922,0.032323,945.69,0.97184,-0.014539,0.2352,349.37,-0.23454,0.036769,0.97141,133.09
> ui mousemode right "move picked models"
> ui mousemode right "rotate selected models"
> view matrix models
> #89,-0.021734,-0.9996,0.018322,952.38,0.98039,-0.017719,0.19626,366.31,-0.19586,0.022228,0.98038,117.22
> view matrix models
> #89,0.11004,-0.95336,0.28106,743.61,0.98739,0.13722,0.078887,359.46,-0.11378,0.26884,0.95644,-6.7703
> ui mousemode right "translate selected models"
> view matrix models
> #89,0.11004,-0.95336,0.28106,753.45,0.98739,0.13722,0.078887,363.42,-0.11378,0.26884,0.95644,4.2715
> view matrix models
> #89,0.11004,-0.95336,0.28106,751.55,0.98739,0.13722,0.078887,359.94,-0.11378,0.26884,0.95644,11.059
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 160
shifted from previous position = 12
rotated from previous position = 62.7 degrees
atoms outside contour = 3685, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46076151 0.27278806 0.84456229 -647.77029751
0.45337954 0.74572006 -0.48820954 -226.02249776
-0.76298479 0.60785544 0.21992258 -2.52567073
Axis 0.56092932 0.82268871 0.09242066
Axis point -210.40799305 0.00000000 267.66654537
Rotation angle (degrees) 77.68993151
Shift along axis -549.53293354
> fitmap #89 inMap #68
Fit molecule PflB_dloop.pdb (#89) to map 1x_Cage-units.mrc (#68) using 11429
atoms
average map value = 3.27, steps = 48
shifted from previous position = 0.0283
rotated from previous position = 0.0331 degrees
atoms outside contour = 3685, contour level = 0.000178
Position of PflB_dloop.pdb (#89) relative to 1x_Cage-units.mrc (#68)
coordinates:
Matrix rotation and translation
0.46027899 0.27275851 0.84483490 -647.66994740
0.45343116 0.74591803 -0.48785903 -226.32614784
-0.76324530 0.60762574 0.21965319 -2.17810524
Axis 0.56059773 0.82291068 0.09245649
Axis point -210.06430261 0.00000000 267.77849608
Rotation angle (degrees) 77.70617322
Shift along axis -549.52988639
> view matrix models
> #89,-0.39034,-0.6884,0.61134,704.73,0.5486,0.35934,0.75492,128.23,-0.73937,0.63006,0.23739,510.8
> view matrix models
> #89,-0.39034,-0.6884,0.61134,702.92,0.5486,0.35934,0.75492,129.8,-0.73937,0.63006,0.23739,510.88
> view matrix models
> #89,-0.39034,-0.6884,0.61134,702.48,0.5486,0.35934,0.75492,129.41,-0.73937,0.63006,0.23739,510.91
> select clear
> view orient
> sym #89 C18 copies true center #113
Made 18 copies for PflB_dloop.pdb symmetry C18
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-files/PflB/FlgYc13.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/PDB-files/PflB/FlgYc13.pdb
---
warnings | End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
Chain information for FlgYc13.pdb
---
Chain | Description
91.1/A 91.3/A 91.5/A 91.7/A 91.9/A 91.11/A 91.13/A 91.15/A 91.17/A 91.19/A 91.21/A 91.23/A 91.25/A 91.27/A 91.29/A 91.31/A 91.33/A 91.35/A 91.2/B 91.4/B 91.6/B 91.8/B 91.10/B 91.12/B 91.14/B 91.16/B 91.18/B 91.20/B 91.22/B 91.24/B 91.26/B 91.28/B 91.30/B 91.32/B 91.34/B 91.36/B | No description available
> select add #91
57096 atoms, 57744 bonds, 7164 residues, 37 models selected
> view matrix models #91,1,0,0,580.87,0,1,0,556.17,0,0,1,0
> show #!512 models
> view matrix models #91,1,0,0,575.57,0,1,0,548.25,0,0,1,409.98
> view matrix models #91,1,0,0,575.77,0,1,0,555.67,0,0,1,460.28
> 30\. combine #91.1-91.36 modelId #92 name FlgYc13
Unknown command: 30. combine #91.1-91.36 modelId #92 name FlgYc13
> combine #91.1-91.36 modelId #92 name FlgYc13
No structures specified
> combine #91 modelId #92 name FlgYc13
Remapping chain ID 'A' in FlgYc13.pdb #91.3 to 'C'
Remapping chain ID 'B' in FlgYc13.pdb #91.4 to 'D'
Remapping chain ID 'A' in FlgYc13.pdb #91.5 to 'E'
Remapping chain ID 'B' in FlgYc13.pdb #91.6 to 'F'
Remapping chain ID 'A' in FlgYc13.pdb #91.7 to 'G'
Remapping chain ID 'B' in FlgYc13.pdb #91.8 to 'H'
Remapping chain ID 'A' in FlgYc13.pdb #91.9 to 'I'
Remapping chain ID 'B' in FlgYc13.pdb #91.10 to 'J'
Remapping chain ID 'A' in FlgYc13.pdb #91.11 to 'K'
Remapping chain ID 'B' in FlgYc13.pdb #91.12 to 'L'
Remapping chain ID 'A' in FlgYc13.pdb #91.13 to 'M'
Remapping chain ID 'B' in FlgYc13.pdb #91.14 to 'N'
Remapping chain ID 'A' in FlgYc13.pdb #91.15 to 'O'
Remapping chain ID 'B' in FlgYc13.pdb #91.16 to 'P'
Remapping chain ID 'A' in FlgYc13.pdb #91.17 to 'Q'
Remapping chain ID 'B' in FlgYc13.pdb #91.18 to 'R'
Remapping chain ID 'A' in FlgYc13.pdb #91.19 to 'S'
Remapping chain ID 'B' in FlgYc13.pdb #91.20 to 'T'
Remapping chain ID 'A' in FlgYc13.pdb #91.21 to 'U'
Remapping chain ID 'B' in FlgYc13.pdb #91.22 to 'V'
Remapping chain ID 'A' in FlgYc13.pdb #91.23 to 'W'
Remapping chain ID 'B' in FlgYc13.pdb #91.24 to 'X'
Remapping chain ID 'A' in FlgYc13.pdb #91.25 to 'Y'
Remapping chain ID 'B' in FlgYc13.pdb #91.26 to 'Z'
Remapping chain ID 'A' in FlgYc13.pdb #91.27 to 'a'
Remapping chain ID 'B' in FlgYc13.pdb #91.28 to 'b'
Remapping chain ID 'A' in FlgYc13.pdb #91.29 to 'c'
Remapping chain ID 'B' in FlgYc13.pdb #91.30 to 'd'
Remapping chain ID 'A' in FlgYc13.pdb #91.31 to 'e'
Remapping chain ID 'B' in FlgYc13.pdb #91.32 to 'f'
Remapping chain ID 'A' in FlgYc13.pdb #91.33 to 'g'
Remapping chain ID 'B' in FlgYc13.pdb #91.34 to 'h'
Remapping chain ID 'A' in FlgYc13.pdb #91.35 to 'i'
Remapping chain ID 'B' in FlgYc13.pdb #91.36 to 'j'
> select subtract #91
Nothing selected
> hide #91.1 models
> show #91.1 models
> hide #91.4 models
> show #91.4 models
> hide #91.7 models
> show #91.7 models
> hide #91.22 models
> show #91.22 models
> hide #92 models
> hide #91.33 models
> show #91.33 models
> hide #91.34 models
> show #91.34 models
> hide #91.5 models
> show #91.5 models
> hide #91.1 models
> hide #91.2 models
> hide #91.3 models
> hide #91.4 models
> hide #91.5 models
> hide #91.6 models
> hide #91.7 models
> hide #91.8 models
> hide #91.9 models
> hide #91.10 models
> hide #91.11 models
> hide #91.12 models
> hide #91.13 models
> hide #91.14 models
> hide #91.15 models
> hide #91.16 models
> hide #91.17 models
> hide #91.18 models
> hide #91.19 models
> hide #91.20 models
> hide #91.21 models
> hide #91.22 models
> hide #91.23 models
> hide #91.24 models
> hide #91.25 models
> hide #91.26 models
> hide #91.27 models
> hide #91.28 models
> hide #91.29 models
> hide #91.30 models
> hide #91.31 models
> hide #91.32 models
> hide #91.33 models
> hide #91.34 models
> hide #91.35 models
> hide #91.36 models
> show #91.1 models
> show #91.2 models
> show #91.3 models
> show #91.4 models
> show #91.5 models
> show #91.6 models
> show #91.7 models
> show #91.8 models
> show #91.9 models
> show #91.10 models
> show #91.11 models
> show #91.12 models
> show #91.13 models
> show #91.14 models
> show #91.15 models
> show #91.16 models
> show #91.17 models
> show #91.18 models
> show #91.19 models
> show #91.20 models
> show #91.21 models
> show #91.22 models
> show #91.23 models
> show #91.24 models
> show #91.25 models
> show #91.26 models
> show #91.27 models
> show #91.28 models
> show #91.29 models
> show #91.30 models
> show #91.31 models
> show #91.32 models
> show #91.33 models
> show #91.34 models
> show #91.35 models
> show #91.36 models
> hide #!91 models
> show #92 models
> select add #92
57096 atoms, 57744 bonds, 7164 residues, 1 model selected
> view matrix models #92,1,0,0,574.34,0,1,0,556.18,0,0,1,473.59
> view matrix models #92,1,0,0,577.06,0,1,0,540.92,0,0,1,473.12
> fitmap #92 inMap #512
Fit molecule FlgYc13 (#92) to map Unknown-ring.mrc gaussian (#512) using 57096
atoms
average map value = 0.001619, steps = 200
shifted from previous position = 3.92
rotated from previous position = 4.27 degrees
atoms outside contour = 41409, contour level = 0.0010864
Position of FlgYc13 (#92) relative to Unknown-ring.mrc gaussian (#512)
coordinates:
Matrix rotation and translation
0.98218270 0.18792786 0.00050229 310.71337312
-0.18792824 0.98218240 0.00084016 266.99218572
-0.00033545 -0.00091959 0.99999952 288.06162271
Axis -0.00468190 0.00222887 -0.99998656
Axis point 1566.13643563 -1497.68303504 0.00000000
Rotation angle (degrees) 10.83203963
Shift along axis -288.91738790
> fitmap #92 inMap #512
Fit molecule FlgYc13 (#92) to map Unknown-ring.mrc gaussian (#512) using 57096
atoms
average map value = 0.001619, steps = 40
shifted from previous position = 0.039
rotated from previous position = 0.194 degrees
atoms outside contour = 41404, contour level = 0.0010864
Position of FlgYc13 (#92) relative to Unknown-ring.mrc gaussian (#512)
coordinates:
Matrix rotation and translation
0.98154221 0.19124507 0.00045014 310.71041639
-0.19124543 0.98154179 0.00095283 266.84024906
-0.00025961 -0.00102133 0.99999944 288.02618030
Axis -0.00516125 0.00185557 -0.99998496
Axis point 1539.79191021 -1468.25740624 0.00000000
Rotation angle (degrees) 11.02563237
Shift along axis -289.13036010
> fitmap #92 inMap #512
Fit molecule FlgYc13 (#92) to map Unknown-ring.mrc gaussian (#512) using 57096
atoms
average map value = 0.001619, steps = 48
shifted from previous position = 0.0126
rotated from previous position = 0.1 degrees
atoms outside contour = 41415, contour level = 0.0010864
Position of FlgYc13 (#92) relative to Unknown-ring.mrc gaussian (#512)
coordinates:
Matrix rotation and translation
0.98187494 0.18952914 0.00055782 310.70925227
-0.18952960 0.98187457 0.00092688 266.91759193
-0.00037204 -0.00101580 0.99999941 288.00987760
Axis -0.00512493 0.00245303 -0.99998386
Axis point 1553.87699543 -1482.96099291 0.00000000
Rotation angle (degrees) 10.92549855
Shift along axis -288.94283430
> fitmap #92 inMap #512
Fit molecule FlgYc13 (#92) to map Unknown-ring.mrc gaussian (#512) using 57096
atoms
average map value = 0.001619, steps = 44
shifted from previous position = 0.0373
rotated from previous position = 0.0548 degrees
atoms outside contour = 41410, contour level = 0.0010864
Position of FlgYc13 (#92) relative to Unknown-ring.mrc gaussian (#512)
coordinates:
Matrix rotation and translation
0.98205460 0.18859619 0.00049777 310.71270242
-0.18859656 0.98205429 0.00084185 266.96203861
-0.00033007 -0.00092062 0.99999952 288.04932769
Axis -0.00467252 0.00219471 -0.99998668
Axis point 1560.83448613 -1491.82731703 0.00000000
Rotation angle (degrees) 10.87102825
Shift along axis -288.91139821
> show #!510 models
> hide #!510 models
> select subtract #92
Nothing selected
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver1_2024.cxs includeMaps true
> show #!69 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/For-FlgY-model_June2024/Segments/FlgY-with-joints.mrc
Opened FlgY-with-joints.mrc as #93, grid size 220,220,220, pixel 4.3, shown at
level 0.346, step 1, values float32
> volume #93 level 0.4813
> select add #93
2 models selected
> view matrix models #93,1,0,0,625.68,0,1,0,553.48,0,0,1,272.15
> view matrix models #93,1,0,0,575.39,0,1,0,516.83,0,0,1,551.43
> view matrix models #93,1,0,0,529.89,0,1,0,547.2,0,0,1,573.01
> view matrix models #93,1,0,0,524.96,0,1,0,533.96,0,0,1,540.43
> fitmap #93 inMap #512
Fit map FlgY-with-joints.mrc in map Unknown-ring.mrc gaussian using 35179
points
correlation = 0.5373, correlation about mean = 0.5337, overlap = 192.6
steps = 252, shift = 13.1, angle = 8.36 degrees
Position of FlgY-with-joints.mrc (#93) relative to Unknown-ring.mrc gaussian
(#512) coordinates:
Matrix rotation and translation
0.99950986 -0.03129518 -0.00080300 268.78639333
0.03129179 0.99950255 -0.00393464 269.24569752
0.00092573 0.00390758 0.99999194 364.36561859
Axis 0.12428229 -0.02739666 0.99186861
Axis point -8829.28430210 7188.42394746 0.00000000
Rotation angle (degrees) 1.80798380
Shift along axis 387.43177355
> fitmap #93 inMap #512
Fit map FlgY-with-joints.mrc in map Unknown-ring.mrc gaussian using 35179
points
correlation = 0.5373, correlation about mean = 0.5338, overlap = 192.6
steps = 28, shift = 0.0473, angle = 0.0611 degrees
Position of FlgY-with-joints.mrc (#93) relative to Unknown-ring.mrc gaussian
(#512) coordinates:
Matrix rotation and translation
0.99947638 -0.03234880 -0.00072801 268.78644810
0.03234557 0.99946841 -0.00408129 269.23365848
0.00085965 0.00405561 0.99999141 364.41087777
Axis 0.12475428 -0.02434195 0.99188903
Axis point -8501.78540000 6948.61684814 0.00000000
Rotation angle (degrees) 1.86884402
Shift along axis 388.43373688
> fitmap #93 inMap #512
Fit map FlgY-with-joints.mrc in map Unknown-ring.mrc gaussian using 35179
points
correlation = 0.5373, correlation about mean = 0.5338, overlap = 192.6
steps = 44, shift = 0.0369, angle = 0.0114 degrees
Position of FlgY-with-joints.mrc (#93) relative to Unknown-ring.mrc gaussian
(#512) coordinates:
Matrix rotation and translation
0.99947994 -0.03223704 -0.00078695 268.78243848
0.03223371 0.99947265 -0.00392658 269.24162876
0.00091311 0.00389917 0.99999198 364.37486733
Axis 0.12045864 -0.02616834 0.99237338
Axis point -8551.90535701 7029.83800387 0.00000000
Rotation angle (degrees) 1.86147272
Shift along axis 386.92748087
> color #93 #b2b2ff47 models
> hide #!113 models
> split #92
Split FlgYc13 (#92) into 36 models
Chain information for FlgYc13 A #92.1
---
Chain | Description
A | No description available
Chain information for FlgYc13 B #92.2
---
Chain | Description
B | No description available
Chain information for FlgYc13 C #92.3
---
Chain | Description
C | No description available
Chain information for FlgYc13 D #92.4
---
Chain | Description
D | No description available
Chain information for FlgYc13 E #92.5
---
Chain | Description
E | No description available
Chain information for FlgYc13 F #92.6
---
Chain | Description
F | No description available
Chain information for FlgYc13 G #92.7
---
Chain | Description
G | No description available
Chain information for FlgYc13 H #92.8
---
Chain | Description
H | No description available
Chain information for FlgYc13 I #92.9
---
Chain | Description
I | No description available
Chain information for FlgYc13 J #92.10
---
Chain | Description
J | No description available
Chain information for FlgYc13 K #92.11
---
Chain | Description
K | No description available
Chain information for FlgYc13 L #92.12
---
Chain | Description
L | No description available
Chain information for FlgYc13 M #92.13
---
Chain | Description
M | No description available
Chain information for FlgYc13 N #92.14
---
Chain | Description
N | No description available
Chain information for FlgYc13 O #92.15
---
Chain | Description
O | No description available
Chain information for FlgYc13 P #92.16
---
Chain | Description
P | No description available
Chain information for FlgYc13 Q #92.17
---
Chain | Description
Q | No description available
Chain information for FlgYc13 R #92.18
---
Chain | Description
R | No description available
Chain information for FlgYc13 S #92.19
---
Chain | Description
S | No description available
Chain information for FlgYc13 T #92.20
---
Chain | Description
T | No description available
Chain information for FlgYc13 U #92.21
---
Chain | Description
U | No description available
Chain information for FlgYc13 V #92.22
---
Chain | Description
V | No description available
Chain information for FlgYc13 W #92.23
---
Chain | Description
W | No description available
Chain information for FlgYc13 X #92.24
---
Chain | Description
X | No description available
Chain information for FlgYc13 Y #92.25
---
Chain | Description
Y | No description available
Chain information for FlgYc13 Z #92.26
---
Chain | Description
Z | No description available
Chain information for FlgYc13 a #92.27
---
Chain | Description
a | No description available
Chain information for FlgYc13 b #92.28
---
Chain | Description
b | No description available
Chain information for FlgYc13 c #92.29
---
Chain | Description
c | No description available
Chain information for FlgYc13 d #92.30
---
Chain | Description
d | No description available
Chain information for FlgYc13 e #92.31
---
Chain | Description
e | No description available
Chain information for FlgYc13 f #92.32
---
Chain | Description
f | No description available
Chain information for FlgYc13 g #92.33
---
Chain | Description
g | No description available
Chain information for FlgYc13 h #92.34
---
Chain | Description
h | No description available
Chain information for FlgYc13 i #92.35
---
Chain | Description
i | No description available
Chain information for FlgYc13 j #92.36
---
Chain | Description
j | No description available
> hide #92.1 models
> show #92.1 models
> hide #92.1 models
> hide #92.2 models
> show #92.1 models
> show #92.2 models
> select add #92
57096 atoms, 57744 bonds, 7164 residues, 39 models selected
> view orient
> ui mousemode right "rotate selected models"
> view matrix models
> #93,0.99345,-0.11429,0.00076733,536.97,0.11429,0.99344,-0.0035395,537.09,-0.00035776,0.003604,0.99999,546.36,#92,0.99948,0.032174,0,-16.949,-0.032174,0.99948,0,17.309,0,0,1,0
> undo
> select subtract #93
57096 atoms, 57744 bonds, 7164 residues, 37 models selected
> view matrix models
> #92,0.99941,1.9882e-06,0.034218,-16.864,-7.0807e-05,1,0.00201,-0.97012,-0.034218,-0.0020112,0.99941,19.738
> undo
> view matrix models
> #92,0.997,0.07745,0,-39.887,-0.07745,0.997,0,43.176,0,0,1,0
> select subtract #92
Nothing selected
> hide #!92 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-
> files/Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
Chain information for
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
#94
---
Chain | Description
A B | No description available
> select add #94
3420 atoms, 3458 bonds, 430 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #94,1,0,0,-94.264,0,1,0,275.36,0,0,1,487.31
> view matrix models #94,1,0,0,538.47,0,1,0,657.48,0,0,1,425.92
> view matrix models #94,1,0,0,537.01,0,1,0,665.58,0,0,1,500.05
> hide #!512 models
> ui mousemode right "rotate selected models"
> view matrix models
> #94,0.88199,-0.10669,0.45904,535.74,-0.017229,0.96609,0.25765,664.13,-0.47096,-0.23515,0.85024,508.05
> view matrix models
> #94,0.7532,-0.61766,0.22626,552.42,0.48892,0.75578,0.43561,668.54,-0.44006,-0.21748,0.87123,507.36
> ui mousemode right "translate selected models"
> view matrix models
> #94,0.7532,-0.61766,0.22626,460.56,0.48892,0.75578,0.43561,643.86,-0.44006,-0.21748,0.87123,511.15
> ui mousemode right "rotate selected models"
> view matrix models
> #94,0.62756,-0.77016,0.11409,465.92,0.65197,0.59994,0.46369,648.06,-0.42556,-0.21661,0.87862,511.06
> ui mousemode right "translate selected models"
> view matrix models
> #94,0.62756,-0.77016,0.11409,455.65,0.65197,0.59994,0.46369,635.15,-0.42556,-0.21661,0.87862,511.01
> ui mousemode right "rotate selected models"
> view matrix models
> #94,0.53065,-0.77965,0.33251,453.87,0.49879,0.60442,0.6212,633.53,-0.68529,-0.16378,0.70961,511.04
> view matrix models
> #94,0.50742,-0.78521,0.35493,453.81,0.46765,0.59689,0.65194,633.45,-0.72376,-0.16482,0.67007,511.43
> view matrix models
> #94,0.4517,-0.85342,0.2601,456.63,0.5249,0.48995,0.69601,636.09,-0.72142,-0.17786,0.66926,511.81
> ui mousemode right "translate selected models"
> view matrix models
> #94,0.4517,-0.85342,0.2601,448.64,0.5249,0.48995,0.69601,639.24,-0.72142,-0.17786,0.66926,512.73
> fitmap #94 inMap #93
Fit molecule
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) to map FlgY-with-joints.mrc (#93) using 3420 atoms
average map value = 6.046, steps = 80
shifted from previous position = 16.3
rotated from previous position = 8.1 degrees
atoms outside contour = 557, contour level = 0.48132
Position of
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) relative to FlgY-with-joints.mrc (#93) coordinates:
Matrix rotation and translation
0.61053635 -0.75122849 0.25080096 -63.65045481
0.44922599 0.58928396 0.67152098 105.70408482
-0.65225868 -0.29732166 0.69725064 -44.78209988
Axis -0.54200075 0.50519969 0.67157163
Axis point -142.19389525 30.71045438 0.00000000
Rotation angle (degrees) 63.35024007
Shift along axis 57.82587748
> fitmap #94 inMap #93
Fit molecule
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) to map FlgY-with-joints.mrc (#93) using 3420 atoms
average map value = 6.046, steps = 40
shifted from previous position = 0.0252
rotated from previous position = 0.289 degrees
atoms outside contour = 558, contour level = 0.48132
Position of
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) relative to FlgY-with-joints.mrc (#93) coordinates:
Matrix rotation and translation
0.61327615 -0.74985774 0.24820503 -63.63659259
0.45102670 0.59041962 0.66931278 105.68384445
-0.64843449 -0.29852647 0.70029613 -44.78776095
Axis -0.54249863 0.50258936 0.67312641
Axis point -142.71326577 30.32916233 0.00000000
Rotation angle (degrees) 63.12818591
Shift along axis 57.49051570
> view orient
> ui mousemode right "move picked models"
> ui mousemode right "rotate selected models"
> view matrix models
> #94,0.56246,-0.80752,0.17762,457.6,0.51478,0.51012,0.68905,631.81,-0.64702,-0.29613,0.70261,501.98
> view matrix models
> #94,0.57123,-0.79863,0.18943,457.24,0.50504,0.52392,0.68589,631.45,-0.64702,-0.29613,0.70261,501.98
> ui mousemode right "translate selected models"
> view matrix models
> #94,0.57123,-0.79863,0.18943,455.01,0.50504,0.52392,0.68589,631.66,-0.64702,-0.29613,0.70261,501.98
> show #!113 models
> view orient
> sym #94 C13 copies true center #113
Made 13 copies for
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
symmetry C13
> select subtract #94
Nothing selected
> select add #95.1
3420 atoms, 3458 bonds, 430 residues, 1 model selected
> color #95.1 #3738b0ff
> select #113
2 models selected
> select subtract #95.1
2 models selected
> hide #!88 models
> hide #!90 models
> close #95
> show #!115 models
> hide #!115 models
> show #94 models
> select subtract #113
Nothing selected
> fitmap #94 inMap #93
Fit molecule
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) to map FlgY-with-joints.mrc (#93) using 3420 atoms
average map value = 6.046, steps = 68
shifted from previous position = 3.23
rotated from previous position = 3.4 degrees
atoms outside contour = 556, contour level = 0.48132
Position of
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) relative to FlgY-with-joints.mrc (#93) coordinates:
Matrix rotation and translation
0.61368537 -0.74962280 0.24790306 -63.62543943
0.45195480 0.59097238 0.66819796 105.65366567
-0.64740029 -0.29802233 0.70146672 -44.73026727
Axis -0.54191989 0.50214501 0.67392375
Axis point -142.71487917 30.15838124 0.00000000
Rotation angle (degrees) 63.05967601
Shift along axis 57.38856229
> fitmap #94 inMap #93
Fit molecule
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) to map FlgY-with-joints.mrc (#93) using 3420 atoms
average map value = 6.046, steps = 28
shifted from previous position = 0.0721
rotated from previous position = 0.0247 degrees
atoms outside contour = 558, contour level = 0.48132
Position of
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
(#94) relative to FlgY-with-joints.mrc (#93) coordinates:
Matrix rotation and translation
0.61391252 -0.74951143 0.24767728 -63.62476401
0.45177255 0.59090655 0.66837939 105.66152672
-0.64731212 -0.29843268 0.70137362 -44.79879809
Axis -0.54226235 0.50197869 0.67377218
Axis point -142.82266524 30.17939515 0.00000000
Rotation angle (degrees) 63.05748379
Shift along axis 57.35696455
> view orient
> turn x 90
[Repeated 2 time(s)]
> turn y 10
[Repeated 12 time(s)]
> hide #!472 models
> hide #!473 models
> hide #!474 models
> select add #113
2 models selected
> select subtract #113
Nothing selected
> select add #94
3420 atoms, 3458 bonds, 430 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #94,0.6696,-0.73857,-0.078444,458.07,0.69256,0.58274,0.42517,632.23,-0.2683,-0.33902,0.90171,501.41
> view orient
> turn x 90
[Repeated 1 time(s)]
> view matrix models
> #94,0.7224,-0.69004,-0.044488,456.38,0.6373,0.63946,0.43005,630.56,-0.2683,-0.33902,0.90171,501.41
> ui mousemode right "translate selected models"
> view matrix models
> #94,0.7224,-0.69004,-0.044488,455.8,0.6373,0.63946,0.43005,631.59,-0.2683,-0.33902,0.90171,501.41
> sym #94 C13 copies true center #113
Made 13 copies for
Hp_motElikeproteindimer_ed02a_unrelaxed_rank_004_alphafold2_multimer_v3_model_1_seed_000.pdb
symmetry C13
> color #95.1 #312fb0ff
> show #89 models
> show #87 models
> hide #87 models
> show #!88 models
> hide #89 models
> show #!90 models
> hide #!113 models
> show #!70 models
> show #!71 models
> show #!72 models
> show #!73 models
> show #!74 models
> show #!75 models
> show #!76 models
> show #!77 models
> show #!78 models
> show #!79 models
> show #!80 models
> show #!81 models
> show #!82 models
> show #!83 models
> show #!84 models
> show #!85 models
> show #!86 models
> hide #!86 models
> hide #!69 models
> hide #!70 models
> hide #!71 models
> hide #!72 models
> hide #!73 models
> hide #!74 models
> hide #!76 models
> hide #!77 models
> hide #!75 models
> hide #!78 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> hide #!82 models
> hide #!83 models
> hide #!84 models
> hide #!85 models
> select subtract #94
Nothing selected
> select add #95
44460 atoms, 44954 bonds, 5590 residues, 14 models selected
> select add #93
44460 atoms, 44954 bonds, 5590 residues, 16 models selected
> view orient
> ui mousemode right "rotate selected models"
> view matrix models
> #93,0.99952,-0.030985,0.00046926,537.1,0.030986,0.99951,-0.0035912,537.14,-0.00035776,0.003604,0.99999,546.36,#95,0.99331,0.11547,0,-58.263,-0.11547,0.99331,0,65.393,0,0,1,0
> select subtract #93
44460 atoms, 44954 bonds, 5590 residues, 14 models selected
> view matrix models
> #95,0.99397,0.10965,0,-55.496,-0.10965,0.99397,0,61.895,0,0,1,0
> select subtract #95
Nothing selected
> color #95 #bf612dff models
> color #95 #bf6847ff models
> color #95 #b5bf13ff models
> color #88 #7270bfff models
> color #88 #4d4abfff models
> color #88 #2a25bfff models
> select add #95
44460 atoms, 44954 bonds, 5590 residues, 14 models selected
> select subtract #95
Nothing selected
> show #!113 models
> view name Top
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver2_2024.cxs includeMaps true
> color #88 #35c9cbff models
> color #88 #3b9fcbff models
> color #90 #bf82b6ff models
> color #90 #b937bfff models
> color #68 #797979ff models
> color #68 #79797944 models
> color #68 #79797942 models
> color #68 #79797948 models
> show #!69 models
> show #!70 models
> show #!71 models
> show #!72 models
> show #!74 models
> hide #!74 models
> show #!85 models
> show #!84 models
> show #!83 models
> show #!82 models
> color #68 #7979794d models
> color #68-85 #7979794d models
> color #93 #7979794d models
> turn x 10
[Repeated 1 time(s)]
> turn x -10
[Repeated 1 time(s)]
> turn x -45
> turn x -10
> view Top
> turn x 90
[Repeated 2 time(s)]
> turn y 90
> show #!36 models
> show #!35 models
> show #!34 models
> show #!33 models
> show #!32 models
> show #!31 models
> show #!30 models
> hide #!30 models
> hide #!31 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> hide #!36 models
> show #!494 models
> show #!494.1 models
> show #!494.2 models
> show #!494.14 models
> show #!494.15 models
> show #!494.16 models
> show #!494.17 models
> show #!494.18 models
> show #!493 models
> show #!486 models
> show #!488 models
> select add #88
114012 atoms, 116226 bonds, 14022 residues, 19 models selected
Alignment identifier is 1
> select #88.1/A:13 #88.2/A:13 #88.3/A:13 #88.4/A:13 #88.5/A:13 #88.6/A:13
> #88.7/A:13 #88.8/A:13 #88.9/A:13 #88.10/A:13 #88.11/A:13 #88.12/A:13
> #88.13/A:13 #88.14/A:13 #88.15/A:13 #88.16/A:13 #88.17/A:13 #88.18/A:13
144 atoms, 126 bonds, 18 residues, 18 models selected
> select #88.1/A:13-187 #88.2/A:13-187 #88.3/A:13-187 #88.4/A:13-187
> #88.5/A:13-187 #88.6/A:13-187 #88.7/A:13-187 #88.8/A:13-187 #88.9/A:13-187
> #88.10/A:13-187 #88.11/A:13-187 #88.12/A:13-187 #88.13/A:13-187
> #88.14/A:13-187 #88.15/A:13-187 #88.16/A:13-187 #88.17/A:13-187
> #88.18/A:13-187
25362 atoms, 25938 bonds, 3150 residues, 18 models selected
1 [ID: 1] region 18 chains [1-175] RMSD: 518.305
> color sel #4b678c4d
> color sel #4e6b8c4d
> color sel #58758c4d
> color sel #5c7c8c4d
> color sel #5f818c4d
> color sel #61838c4d
> color sel #64858c4d
> color sel #678b8c4d
> color sel #698c8c4d
[Repeated 1 time(s)]
> color sel #638b8c4d
> color sel #608b8c4d
> color sel #5f8b8c4d
> color sel #5f8b8c4e
> color sel #5f8b8cf4
> color sel #5f8b8cff
> color sel #8acaccff
> color sel #adfdffff
> color sel #51fff9ff
> color sel #34fdffff
> color sel #35feffff
> select add #88
114012 atoms, 116226 bonds, 14022 residues, 19 models selected
> select subtract #88
Nothing selected
> select #88.1/A:187 #88.2/A:187 #88.3/A:187 #88.4/A:187 #88.5/A:187
> #88.6/A:187 #88.7/A:187 #88.8/A:187 #88.9/A:187 #88.10/A:187 #88.11/A:187
> #88.12/A:187 #88.13/A:187 #88.14/A:187 #88.15/A:187 #88.16/A:187
> #88.17/A:187 #88.18/A:187
90 atoms, 72 bonds, 18 residues, 18 models selected
> select #88.1/A:13-187 #88.2/A:13-187 #88.3/A:13-187 #88.4/A:13-187
> #88.5/A:13-187 #88.6/A:13-187 #88.7/A:13-187 #88.8/A:13-187 #88.9/A:13-187
> #88.10/A:13-187 #88.11/A:13-187 #88.12/A:13-187 #88.13/A:13-187
> #88.14/A:13-187 #88.15/A:13-187 #88.16/A:13-187 #88.17/A:13-187
> #88.18/A:13-187
25362 atoms, 25938 bonds, 3150 residues, 18 models selected
1 [ID: 1] region 18 chains [1-175] RMSD: 518.305
> color sel #ff7445ff
[Repeated 1 time(s)]
> color sel #ff7647ff
> color sel #ff7d54ff
> color sel #ff8662ff
> color sel #ff8d6cff
> color sel #ff9170ff
> color sel #ff9e81ff
> color sel #ffad95ff
[Repeated 2 time(s)]
> color sel #ffae93ff
> select add #88
114012 atoms, 116226 bonds, 14022 residues, 19 models selected
> select subtract #88
Nothing selected
> select #88.1/A:187 #88.2/A:187 #88.3/A:187 #88.4/A:187 #88.5/A:187
> #88.6/A:187 #88.7/A:187 #88.8/A:187 #88.9/A:187 #88.10/A:187 #88.11/A:187
> #88.12/A:187 #88.13/A:187 #88.14/A:187 #88.15/A:187 #88.16/A:187
> #88.17/A:187 #88.18/A:187
90 atoms, 72 bonds, 18 residues, 18 models selected
> select #88.1/A:13-187 #88.2/A:13-187 #88.3/A:13-187 #88.4/A:13-187
> #88.5/A:13-187 #88.6/A:13-187 #88.7/A:13-187 #88.8/A:13-187 #88.9/A:13-187
> #88.10/A:13-187 #88.11/A:13-187 #88.12/A:13-187 #88.13/A:13-187
> #88.14/A:13-187 #88.15/A:13-187 #88.16/A:13-187 #88.17/A:13-187
> #88.18/A:13-187
25362 atoms, 25938 bonds, 3150 residues, 18 models selected
1 [ID: 1] region 18 chains [1-175] RMSD: 518.305
> color sel #3b72ffff
> color sel #2b54ffff
> color sel #2b29ffff
> color #494 #b3bfafff models
> color #494 #b8bfb7ff models
> color #494 #b6bfb6ff models
> select clear
> select add #88
114012 atoms, 116226 bonds, 14022 residues, 19 models selected
> select add #90
319734 atoms, 324378 bonds, 26712 residues, 38 models selected
> select add #95
364194 atoms, 369332 bonds, 32302 residues, 52 models selected
> hide sel cartoons
> show sel surfaces
[Repeated 1 time(s)]
> hide sel surfaces
> show sel cartoons
> select subtract #88
250182 atoms, 253106 bonds, 18280 residues, 95 models selected
> select subtract #90
44460 atoms, 44954 bonds, 5590 residues, 58 models selected
> select subtract #95
26 models selected
> view name tilt
> view Top
> show #!493.1 models
> show #!493.2 models
> show #!493.14 models
> show #!493.15 models
> show #!493.16 models
> show #!493.17 models
> show #!493.18 models
> show #!73 models
> hide #!73 models
> show #!81 models
> show #64 models
> hide #64 models
> hide #!68 models
> show #!68 models
> hide #!69 models
> hide #!70 models
> hide #!71 models
> hide #!72 models
> show #!80 models
> show #!79 models
> show #!78 models
> show #!77 models
> save /Users/shoichitachiyama/Desktop/Top_STmodel.png supersample 2
> transparentBackground true
> view tilt
> save /Users/shoichitachiyama/Desktop/Tilt_STmodel.png supersample 2
> transparentBackground true
> save /Users/shoichitachiyama/Desktop/Tilt-zoom_STmodel.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver3_2024.cxs includeMaps true
——— End of log from Tue Jun 11 22:15:39 2024 ———
opened ChimeraX session
> open "/Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-files/PflA-PflB_AlphaFold3/fold_2024_06_11_22_34hp_ab
> (1)/fold_2024_06_11_22_34hp_ab_model_0.cif"
Chain information for fold_2024_06_11_22_34hp_ab_model_0.cif #96
---
Chain | Description
A | .
B | .
Drag select of 362 residues
> select add #96
13351 atoms, 13621 bonds, 1645 residues, 1 model selected
> select subtract #96
Nothing selected
> select add #96
13351 atoms, 13621 bonds, 1645 residues, 1 model selected
Alignment identifier is 96/A
Alignment identifier is 96/B
> select #96/A:1-2
22 atoms, 23 bonds, 2 residues, 1 model selected
> select #96/A
6514 atoms, 6640 bonds, 801 residues, 1 model selected
> select add #96
13351 atoms, 13621 bonds, 1645 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #96,1,0,0,183.15,0,1,0,-3.9382,0,0,1,644.16
> select #96/A:705-706
20 atoms, 20 bonds, 2 residues, 1 model selected
> select #96/A:1-706
5739 atoms, 5854 bonds, 706 residues, 1 model selected
> hide sel surfaces
> hide sel cartoons
> select #96/B:843-844
18 atoms, 17 bonds, 2 residues, 1 model selected
> select #96/B
6837 atoms, 6981 bonds, 844 residues, 1 model selected
> select #96/A:800-801
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #96/A:1-800
6507 atoms, 6633 bonds, 800 residues, 1 model selected
> hide sel cartoons
> select #96/B:1
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #96/B
6837 atoms, 6981 bonds, 844 residues, 1 model selected
> save "/Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-files/PflA-PflB_AlphaFold3/fold_2024_06_11_22_34hp_ab
> (1)/PflB_complex.pdb" selectedOnly true
> close #96
> open "/Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-files/PflA-PflB_AlphaFold3/fold_2024_06_11_22_34hp_ab
> (1)/PflB_complex.pdb"
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/PDB-files/PflA-
PflB_AlphaFold3/fold_2024_06_11_22_34hp_ab (1)/PflB_complex.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
14 messages similar to the above omitted
Chain information for PflB_complex.pdb #96
---
Chain | Description
B | No description available
> select add #96
6837 atoms, 6981 bonds, 844 residues, 1 model selected
> hide #!88 models
> show #89 models
> show #!88 models
> hide #89 models
> hide #!90 models
Alignment identifier is 96/B
> select #96/B:2
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #96/B:2-3
16 atoms, 15 bonds, 2 residues, 1 model selected
> select #96/B:1
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #96/B:1-108
848 atoms, 855 bonds, 108 residues, 1 model selected
> select #96/B:1-2
15 atoms, 14 bonds, 2 residues, 1 model selected
> select #96/B:1-139
1084 atoms, 1092 bonds, 139 residues, 1 model selected
> hide sel cartoons
> hide sel surfaces
[Repeated 1 time(s)]
> hide sel atoms
> select add #96
6837 atoms, 6981 bonds, 844 residues, 1 model selected
> select subtract #96
Nothing selected
> select add #96
6837 atoms, 6981 bonds, 844 residues, 1 model selected
> view matrix models #96,1,0,0,37.761,0,1,0,-19.811,0,0,1,-81.484
> hide #!78 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> hide #!82 models
> hide #!83 models
> hide #!84 models
> hide #!85 models
> hide #!88 models
> show #!88 models
> hide #!93 models
> show #!93 models
> hide #!93 models
> hide #!95 models
> hide #!113 models
> hide #!494 models
> hide #!493 models
> hide #!488 models
> hide #!486 models
> view matrix models #96,1,0,0,294.96,0,1,0,62.388,0,0,1,-19.449
> view matrix models #96,1,0,0,324.35,0,1,0,132.85,0,0,1,7.9657
> ui mousemode right "rotate selected models"
> view matrix models
> #96,-0.8167,0.44816,0.36354,447.3,-0.0019677,0.62781,-0.77836,650.42,-0.57706,-0.6364,-0.51185,1128.3
> view matrix models
> #96,-0.87032,0.2996,0.39088,440.52,-0.16526,0.56999,-0.80486,701.04,-0.46394,-0.76508,-0.44656,1062.7
> view matrix models
> #96,-0.90939,0.36113,0.20639,570.41,-0.040932,0.41609,-0.9084,745.21,-0.41392,-0.83454,-0.36361,997.95
> ui mousemode right "translate selected models"
> view matrix models
> #96,-0.90939,0.36113,0.20639,614.6,-0.040932,0.41609,-0.9084,762.97,-0.41392,-0.83454,-0.36361,976.51
> view matrix models
> #96,-0.90939,0.36113,0.20639,584.7,-0.040932,0.41609,-0.9084,715.93,-0.41392,-0.83454,-0.36361,911.4
> view matrix models
> #96,-0.90939,0.36113,0.20639,582.77,-0.040932,0.41609,-0.9084,769.51,-0.41392,-0.83454,-0.36361,922.48
> view matrix models
> #96,-0.90939,0.36113,0.20639,570.64,-0.040932,0.41609,-0.9084,758.01,-0.41392,-0.83454,-0.36361,900.7
> view matrix models
> #96,-0.90939,0.36113,0.20639,577.88,-0.040932,0.41609,-0.9084,775.54,-0.41392,-0.83454,-0.36361,881.86
> ui mousemode right "rotate selected models"
> view matrix models
> #96,-0.81955,0.46552,0.33412,474.77,-0.088853,0.47281,-0.87668,763.95,-0.56608,-0.74816,-0.34612,900.56
> ui mousemode right "translate selected models"
> view matrix models
> #96,-0.81955,0.46552,0.33412,469.92,-0.088853,0.47281,-0.87668,757.91,-0.56608,-0.74816,-0.34612,888.6
> view matrix models
> #96,-0.81955,0.46552,0.33412,470.69,-0.088853,0.47281,-0.87668,769.24,-0.56608,-0.74816,-0.34612,890.16
> ui mousemode right "rotate selected models"
> view matrix models
> #96,-0.82137,0.46382,0.33201,472.47,-0.086999,0.47338,-0.87655,768.79,-0.56373,-0.74885,-0.34846,891.24
> view matrix models
> #96,-0.84059,0.43137,0.32761,479.37,-0.09889,0.47244,-0.8758,770.68,-0.53257,-0.76859,-0.35447,889.02
> view matrix models
> #96,-0.86074,0.40344,0.31042,494.91,-0.082666,0.49094,-0.86726,761.69,-0.50229,-0.77215,-0.38922,905.97
> view matrix models
> #96,-0.84139,0.36466,0.39887,432.56,-0.1436,0.56066,-0.8155,739.39,-0.52101,-0.74342,-0.41937,929.61
> ui mousemode right "translate selected models"
> view matrix models
> #96,-0.84139,0.36466,0.39887,432.43,-0.1436,0.56066,-0.8155,743.32,-0.52101,-0.74342,-0.41937,930.32
> ui mousemode right "rotate selected models"
> view matrix models
> #96,-0.71024,0.49417,0.50135,337.65,0.12229,0.78797,-0.60344,548.46,-0.69325,-0.36728,-0.62009,1096.6
> view matrix models
> #96,-0.6969,0.536,0.47648,351.29,0.14454,0.75573,-0.63873,567.48,-0.70245,-0.37626,-0.60414,1087.9
> ui mousemode right "translate selected models"
> view matrix models
> #96,-0.6969,0.536,0.47648,350.02,0.14454,0.75573,-0.63873,564.74,-0.70245,-0.37626,-0.60414,1080.2
> view matrix models
> #96,-0.6969,0.536,0.47648,350.43,0.14454,0.75573,-0.63873,565.42,-0.70245,-0.37626,-0.60414,1081.2
> view matrix models
> #96,-0.6969,0.536,0.47648,348.8,0.14454,0.75573,-0.63873,568.69,-0.70245,-0.37626,-0.60414,1081.8
> view orient
> show #!113 models
> view orient
> sym #96 C18 copies true center #113
Made 18 copies for PflB_complex.pdb symmetry C18
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-
> files/TV4/Dimers/fold_2024_06_11_23_17hp0931_2/fold_2024_06_11_23_17hp0931_2_model_1.cif
Chain information for fold_2024_06_11_23_17hp0931_2_model_1.cif #98
---
Chain | Description
A B | .
> select subtract #96
Nothing selected
> select add #98
2404 atoms, 2468 bonds, 292 residues, 1 model selected
> view matrix models #98,1,0,0,93.836,0,1,0,358.72,0,0,1,211.9
> view matrix models #98,1,0,0,328.52,0,1,0,513.7,0,0,1,344.37
> view matrix models #98,1,0,0,411.73,0,1,0,579.11,0,0,1,416.28
> view matrix models #98,1,0,0,557.68,0,1,0,202.67,0,0,1,258.1
> view matrix models #98,1,0,0,528.16,0,1,0,286.67,0,0,1,568.85
> ui mousemode right "rotate selected models"
> view matrix models
> #98,0.75698,-0.28342,0.58877,533.08,0.080207,0.93453,0.34673,286.85,-0.64849,-0.21525,0.73015,575.83
> view matrix models
> #98,0.088426,-0.51468,0.85281,541,-0.32394,0.79477,0.51323,291.64,-0.94194,-0.32164,-0.096445,578.2
> ui mousemode right "translate selected models"
> view matrix models
> #98,0.088426,-0.51468,0.85281,618.09,-0.32394,0.79477,0.51323,150.05,-0.94194,-0.32164,-0.096445,568.59
> ui mousemode right "rotate selected models"
> view matrix models
> #98,-0.44857,0.55702,-0.69893,613.2,-0.36051,0.60281,0.71179,152,0.81781,0.57126,-0.069588,546.56
> ui mousemode right "translate selected models"
> view matrix models
> #98,-0.44857,0.55702,-0.69893,613.95,-0.36051,0.60281,0.71179,142.82,0.81781,0.57126,-0.069588,575.76
> ui mousemode right "rotate selected models"
> view matrix models
> #98,-0.77416,0.63001,0.061439,617.22,0.029524,0.13289,-0.99069,140.72,-0.63231,-0.76514,-0.12148,598.23
> view matrix models
> #98,-0.73201,0.38125,0.56464,619.26,-0.38181,0.45684,-0.80344,142.24,-0.56426,-0.80371,-0.18884,597.83
> ui mousemode right "translate selected models"
> view matrix models
> #98,-0.73201,0.38125,0.56464,576.82,-0.38181,0.45684,-0.80344,126.13,-0.56426,-0.80371,-0.18884,606.72
> view matrix models
> #98,-0.73201,0.38125,0.56464,587.9,-0.38181,0.45684,-0.80344,177.17,-0.56426,-0.80371,-0.18884,606.94
> view matrix models
> #98,-0.73201,0.38125,0.56464,562.64,-0.38181,0.45684,-0.80344,166.87,-0.56426,-0.80371,-0.18884,608.89
> ui mousemode right "rotate selected models"
> view matrix models
> #98,-0.7347,0.38909,0.55572,562.59,-0.44778,0.33723,-0.82811,168.29,-0.50962,-0.85725,-0.073535,608.93
> ui mousemode right "translate selected models"
> view matrix models
> #98,-0.7347,0.38909,0.55572,562.02,-0.44778,0.33723,-0.82811,182.34,-0.50962,-0.85725,-0.073535,611.07
> view matrix models
> #98,-0.7347,0.38909,0.55572,559.16,-0.44778,0.33723,-0.82811,183.94,-0.50962,-0.85725,-0.073535,611.76
> ui mousemode right "rotate selected models"
> view matrix models
> #98,-0.72753,0.40414,0.55442,558.99,-0.48391,0.27057,-0.83224,184.74,-0.48635,-0.87376,-0.0012785,611.76
> view matrix models
> #98,-0.58229,0.16943,0.79513,559.69,-0.70161,0.38938,-0.59677,186.09,-0.41071,-0.90536,-0.10786,611.19
> ui mousemode right "translate selected models"
> view matrix models
> #98,-0.58229,0.16943,0.79513,556.37,-0.70161,0.38938,-0.59677,184,-0.41071,-0.90536,-0.10786,612.21
> ui mousemode right "rotate selected models"
> view matrix models
> #98,-0.57091,0.18124,0.80076,556.19,-0.7356,0.32026,-0.59694,184.8,-0.36464,-0.92983,-0.049514,612.05
> view matrix models
> #98,-0.56611,0.18665,0.80292,556.11,-0.74923,0.28969,-0.5956,185.15,-0.34376,-0.93875,-0.024149,611.96
> ui mousemode right "translate selected models"
> view matrix models
> #98,-0.56611,0.18665,0.80292,556.09,-0.74923,0.28969,-0.5956,185.09,-0.34376,-0.93875,-0.024149,611.69
> view matrix models
> #98,-0.56611,0.18665,0.80292,556,-0.74923,0.28969,-0.5956,185.46,-0.34376,-0.93875,-0.024149,611.49
> view matrix models
> #98,-0.56611,0.18665,0.80292,552.85,-0.74923,0.28969,-0.5956,165.59,-0.34376,-0.93875,-0.024149,590.17
> view matrix models
> #98,-0.56611,0.18665,0.80292,556.7,-0.74923,0.28969,-0.5956,180.74,-0.34376,-0.93875,-0.024149,611.47
> ui mousemode right "rotate selected models"
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-
> files/TV4/Dimers/fold_2024_06_11_23_17hp0931_2/fold_2024_06_11_23_17hp0931_2_full_data_2.json
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/PDB-
> files/TV4/Dimers/fold_2024_06_11_23_17hp0931_2/fold_2024_06_11_23_17hp0931_2_model_2.cif
Chain information for fold_2024_06_11_23_17hp0931_2_model_2.cif #99
---
Chain | Description
A B | .
> select subtract #98
Nothing selected
> select add #99
2404 atoms, 2468 bonds, 292 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #99,1,0,0,6.1583,0,1,0,133.17,0,0,1,612.06
> view matrix models #99,1,0,0,550.35,0,1,0,152.34,0,0,1,668.41
> view matrix models #99,1,0,0,522.29,0,1,0,157.65,0,0,1,624.04
> view matrix models #99,1,0,0,561.13,0,1,0,158.66,0,0,1,603.16
> ui mousemode right "rotate selected models"
> view matrix models
> #99,0.97136,-0.10539,-0.21295,558.33,0.18201,0.90615,0.38179,164.01,0.15273,-0.40962,0.89938,602.27
> view matrix models
> #99,0.81374,0.53813,-0.21965,557.75,-0.43706,0.81565,0.37907,162.79,0.38315,-0.21246,0.89892,602.66
> ui mousemode right "translate selected models"
> view matrix models
> #99,0.81374,0.53813,-0.21965,553.26,-0.43706,0.81565,0.37907,177.4,0.38315,-0.21246,0.89892,608.89
> ui mousemode right "rotate selected models"
> view matrix models
> #99,0.81142,0.52642,-0.25391,552.81,-0.39366,0.81338,0.4283,178.13,0.43199,-0.24758,0.86723,608.58
> view matrix models
> #99,0.96541,-0.19157,-0.17688,554.32,0.23389,0.93609,0.26274,177.17,0.11524,-0.29503,0.94851,609.03
> view matrix models
> #99,0.92607,-0.32323,-0.1947,554.05,0.36039,0.91056,0.20247,176.64,0.11184,-0.25767,0.95974,609.16
> view matrix models
> #99,0.86523,-0.45791,-0.2042,553.85,0.48826,0.8621,0.13561,176.04,0.11395,-0.21703,0.96949,609.28
> ui mousemode right "translate selected models"
> view matrix models
> #99,0.86523,-0.45791,-0.2042,560,0.48826,0.8621,0.13561,181.95,0.11395,-0.21703,0.96949,607.02
> ui mousemode right "rotate selected models"
> view matrix models
> #99,0.87941,-0.43916,-0.18378,560.29,0.47585,0.82241,0.31179,184.23,0.014212,-0.36164,0.93221,606.38
> ui mousemode right "translate selected models"
> view matrix models
> #99,0.87941,-0.43916,-0.18378,559.07,0.47585,0.82241,0.31179,177.86,0.014212,-0.36164,0.93221,610.91
> ui mousemode right "rotate selected models"
> view matrix models
> #99,0.88043,-0.43785,-0.18202,559.09,0.47413,0.81824,0.32508,178.03,0.0066035,-0.37251,0.928,610.84
> view matrix models
> #99,0.88014,-0.43541,-0.18912,559,0.47443,0.82058,0.31871,177.94,0.016415,-0.37023,0.9288,610.87
> ui mousemode right "translate selected models"
> view matrix models
> #99,0.88014,-0.43541,-0.18912,558.92,0.47443,0.82058,0.31871,177.89,0.016415,-0.37023,0.9288,610.62
> view matrix models
> #99,0.88014,-0.43541,-0.18912,558.82,0.47443,0.82058,0.31871,177.32,0.016415,-0.37023,0.9288,609.38
> select subtract #99
Nothing selected
> hide #99 models
> select add #98
2404 atoms, 2468 bonds, 292 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #98,-0.61142,0.2116,0.76249,556.88,-0.71225,0.27266,-0.6468,180.48,-0.34476,-0.93855,-0.016002,611.49
> ui mousemode right "translate selected models"
> view matrix models
> #98,-0.61142,0.2116,0.76249,556.95,-0.71225,0.27266,-0.6468,184.01,-0.34476,-0.93855,-0.016002,611.11
> view matrix models
> #98,-0.61142,0.2116,0.76249,556.83,-0.71225,0.27266,-0.6468,183.09,-0.34476,-0.93855,-0.016002,609.64
> select subtract #98
Nothing selected
> color #98 #009051ff
> color #98 #008f00ff
> select add #98
2404 atoms, 2468 bonds, 292 residues, 1 model selected
> view orient
> sym #98 C18 copies true center #113
Made 18 copies for fold_2024_06_11_23_17hp0931_2_model_1.cif symmetry C18
> select subtract #98
Nothing selected
> show #!95 models
> show #!493 models
> select add #493
73782 atoms, 75078 bonds, 36 pseudobonds, 9324 residues, 37 models selected
> hide sel surfaces
> show sel cartoons
> select subtract #493
36 models selected
> show #!494 models
> select add #494
129762 atoms, 131418 bonds, 16560 residues, 19 models selected
> hide sel surfaces
> show sel cartoons
> select subtract #494
162 models selected
> select add #493
73782 atoms, 75078 bonds, 36 pseudobonds, 9324 residues, 37 models selected
> select add #494
203544 atoms, 206496 bonds, 36 pseudobonds, 25884 residues, 92 models selected
> show sel surfaces
> select clear
> select add #100
43272 atoms, 44424 bonds, 5256 residues, 19 models selected
> hide sel cartoons
> show sel surfaces
[Repeated 1 time(s)]
> select subtract #100
36 models selected
> color #100 #71bf8bff models
> hide #!100 models
> show #!100 models
> show #!486 models
> show #!488 models
> hide #!493 models
> hide #!494 models
> hide #!100 models
> show #!494 models
> show #!493 models
> view Top
> save /Users/shoichitachiyama/Desktop/Hp-Topview.png supersample 2
> transparentBackground true
> turn x -60
[Repeated 1 time(s)]
> view orient
> view Top
> show #!69 models
> show #!70 models
> show #!71 models
> show #!72 models
> show #!73 models
> show #!74 models
> show #!75 models
> show #!76 models
> hide #!69 models
> hide #!70 models
> hide #!71 models
> hide #!72 models
> hide #!73 models
> hide #!74 models
> show #!74 models
> hide #!76 models
> hide #!75 models
> hide #!74 models
> show #!78 models
> show #!79 models
> show #!80 models
> show #!81 models
> show #!82 models
> show #!83 models
> show #!84 models
> show #!85 models
> save /Users/shoichitachiyama/Desktop/Hp-Topview.png supersample 2
> transparentBackground true
> turn x -60
> turn x -60view Top
Expected a number or a keyword
> show #!93 models
> view Top
> save /Users/shoichitachiyama/Desktop/Hp-Topview.png supersample 2
> transparentBackground true
> turn x -6-
Expected a number or a keyword
> turn x -60
> save /Users/shoichitachiyama/Desktop/Hp-Zoom.png supersample 2
> transparentBackground true
> show #!100 models
> color #100 #c8abc3ff models
> color #100 #c398c8ff models
> color #100 #c89ec8ff models
> color #100 #c8a0c8ff models
> color #100 #ac8aacff models
> color #100 #a685a6ff models
> select add #88
114012 atoms, 116226 bonds, 14022 residues, 19 models selected
> select add #95
158472 atoms, 161180 bonds, 19612 residues, 51 models selected
> select add #97
281538 atoms, 286838 bonds, 34804 residues, 96 models selected
> show sel surfaces
> select clear
> select #96/B:1-4
32 atoms, 31 bonds, 4 residues, 1 model selected
> select #96/B:1-139
1084 atoms, 1092 bonds, 139 residues, 1 model selected
> select add #96
6837 atoms, 6981 bonds, 844 residues, 1 model selected
> select subtract #96
Nothing selected
> select add #97
123066 atoms, 125658 bonds, 15192 residues, 19 models selected
Alignment identifier is 1
> select #97.1/B:1 #97.2/B:1 #97.3/B:1 #97.4/B:1 #97.5/B:1 #97.6/B:1 #97.7/B:1
> #97.8/B:1 #97.9/B:1 #97.10/B:1 #97.11/B:1 #97.12/B:1 #97.13/B:1 #97.14/B:1
> #97.15/B:1 #97.16/B:1 #97.17/B:1 #97.18/B:1
126 atoms, 108 bonds, 18 residues, 18 models selected
> select #97.1/B:1-139 #97.2/B:1-139 #97.3/B:1-139 #97.4/B:1-139 #97.5/B:1-139
> #97.6/B:1-139 #97.7/B:1-139 #97.8/B:1-139 #97.9/B:1-139 #97.10/B:1-139
> #97.11/B:1-139 #97.12/B:1-139 #97.13/B:1-139 #97.14/B:1-139 #97.15/B:1-139
> #97.16/B:1-139 #97.17/B:1-139 #97.18/B:1-139
19512 atoms, 19656 bonds, 2502 residues, 18 models selected
1 [ID: 1] region 18 chains [1-139] RMSD: 457.094
> hide sel surfaces
> show #!501 models
> show #!502 models
> show #!312 models
> color #312 #7272727e models
> color #312 #72727248 models
> color #312 #72727225 models
> show #!66 models
> show #!313 models
> hide #!313 models
> save /Users/shoichitachiyama/Desktop/Hp-tilt.png supersample 2
> transparentBackground true
> select add #97
123066 atoms, 125658 bonds, 15192 residues, 37 models selected
> select subtract #97
18 models selected
> select add #95
44460 atoms, 44954 bonds, 5590 residues, 14 models selected
Alignment identifier is 1
> select #95.1/A-B:215 #95.2/A-B:215 #95.3/A-B:215 #95.4/A-B:215 #95.5/A-B:215
> #95.6/A-B:215 #95.7/A-B:215 #95.8/A-B:215 #95.9/A-B:215 #95.10/A-B:215
> #95.11/A-B:215 #95.12/A-B:215 #95.13/A-B:215
182 atoms, 156 bonds, 26 residues, 13 models selected
> select #95.1/A-B:179-215 #95.2/A-B:179-215 #95.3/A-B:179-215
> #95.4/A-B:179-215 #95.5/A-B:179-215 #95.6/A-B:179-215 #95.7/A-B:179-215
> #95.8/A-B:179-215 #95.9/A-B:179-215 #95.10/A-B:179-215 #95.11/A-B:179-215
> #95.12/A-B:179-215 #95.13/A-B:179-215
7332 atoms, 7566 bonds, 962 residues, 13 models selected
1 [ID: 1] region 26 chains [179-215] RMSD: 181.828
> hide sel surfaces
> hide sel cartoons
> select add #95
44460 atoms, 44954 bonds, 5590 residues, 40 models selected
> select subtract #95
26 models selected
> save /Users/shoichitachiyama/Desktop/Hp-tilt.png supersample 2
> transparentBackground true
> view Top
> save /Users/shoichitachiyama/Desktop/Hp-top.png supersample 2
> transparentBackground true
> turn x -90
> save /Users/shoichitachiyama/Desktop/Hp-side.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver4_2024.cxs includeMaps true
> select add #88
114012 atoms, 116226 bonds, 14022 residues, 19 models selected
Alignment identifier is 1
> select #88.1/A:13-14 #88.2/A:13-14 #88.3/A:13-14 #88.4/A:13-14 #88.5/A:13-14
> #88.6/A:13-14 #88.7/A:13-14 #88.8/A:13-14 #88.9/A:13-14 #88.10/A:13-14
> #88.11/A:13-14 #88.12/A:13-14 #88.13/A:13-14 #88.14/A:13-14 #88.15/A:13-14
> #88.16/A:13-14 #88.17/A:13-14 #88.18/A:13-14
270 atoms, 252 bonds, 36 residues, 18 models selected
> select #88.1/A:13-192 #88.2/A:13-192 #88.3/A:13-192 #88.4/A:13-192
> #88.5/A:13-192 #88.6/A:13-192 #88.7/A:13-192 #88.8/A:13-192 #88.9/A:13-192
> #88.10/A:13-192 #88.11/A:13-192 #88.12/A:13-192 #88.13/A:13-192
> #88.14/A:13-192 #88.15/A:13-192 #88.16/A:13-192 #88.17/A:13-192
> #88.18/A:13-192
26136 atoms, 26730 bonds, 3240 residues, 18 models selected
1 [ID: 1] region 18 chains [1-180] RMSD: 518.058
> hide sel surfaces
> show sel surfaces
> select clear
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver5_2024.cxs includeMaps true
——— End of log from Wed Jun 12 09:30:40 2024 ———
opened ChimeraX session
> hide #!502 models
> hide #!501 models
> hide #!494 models
> hide #!493 models
> hide #!488 models
> hide #!486 models
> hide #!312 models
> hide #!113 models
> hide #!100 models
> hide #!97 models
> hide #!95 models
> hide #!93 models
> hide #!88 models
> hide #!66 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/Cage_1unit.mrc
Opened Cage_1unit.mrc as #101, grid size 240,240,240, pixel 2.1, shown at
level 0.0446, step 1, values float32
> select add #101
2 models selected
> view matrix models #101,1,0,0,330.28,0,1,0,261.99,0,0,1,22.31
> view matrix models #101,1,0,0,555.61,0,1,0,269.09,0,0,1,531.17
> view matrix models #101,1,0,0,443.68,0,1,0,211.75,0,0,1,515.3
> hide #!85 models
> hide #!84 models
> hide #!83 models
> hide #!82 models
> hide #!81 models
> hide #!80 models
> hide #!79 models
> hide #!78 models
> hide #!68 models
> ui mousemode right "rotate selected models"
> view matrix models
> #101,-0.40233,0.90419,-0.14344,398.68,-0.89231,-0.42233,-0.15945,180.87,-0.20475,0.063838,0.97673,508.65
> ui mousemode right "translate selected models"
> view matrix models
> #101,-0.40233,0.90419,-0.14344,477.38,-0.89231,-0.42233,-0.15945,269.27,-0.20475,0.063838,0.97673,521.45
> view matrix models
> #101,-0.40233,0.90419,-0.14344,520.6,-0.89231,-0.42233,-0.15945,271.42,-0.20475,0.063838,0.97673,564.27
> ui mousemode right "rotate selected models"
> view matrix models
> #101,-0.39441,0.90791,-0.14188,520.86,-0.89679,-0.41398,-0.15614,271.29,-0.2005,0.065656,0.97749,564.41
> view matrix models
> #101,-0.41606,0.90856,-0.037618,520.38,-0.89599,-0.41666,-0.15359,271.32,-0.15522,-0.030195,0.98742,565.8
> ui mousemode right "translate selected models"
> view matrix models
> #101,-0.41606,0.90856,-0.037618,522.19,-0.89599,-0.41666,-0.15359,270.95,-0.15522,-0.030195,0.98742,551.42
> ui tool show "Fit in Map"
> fitmap #101 inMap #77
Fit map Cage_1unit.mrc in map 1x_Cage-units.mrc copy using 137770 points
correlation = 0.8898, correlation about mean = 0.83, overlap = 2.627e+06
steps = 276, shift = 9.04, angle = 19.6 degrees
Position of Cage_1unit.mrc (#101) relative to 1x_Cage-units.mrc copy (#77)
coordinates:
Matrix rotation and translation
0.99999996 -0.00008129 -0.00023503 0.02127615
0.00008124 0.99999997 -0.00019949 0.01698175
0.00023504 0.00019947 0.99999994 -0.04996232
Axis 0.62571365 -0.73723236 0.25489384
Axis point 199.64141417 -0.00000000 122.29320053
Rotation angle (degrees) 0.01826627
Shift along axis -0.01194181
> fitmap #101 inMap #77
Fit map Cage_1unit.mrc in map 1x_Cage-units.mrc copy using 137770 points
correlation = 0.8898, correlation about mean = 0.83, overlap = 2.628e+06
steps = 28, shift = 0.0479, angle = 0.00591 degrees
Position of Cage_1unit.mrc (#101) relative to 1x_Cage-units.mrc copy (#77)
coordinates:
Matrix rotation and translation
0.99999997 -0.00003899 -0.00021544 0.00741415
0.00003893 0.99999995 -0.00029150 -0.01758279
0.00021546 0.00029149 0.99999992 -0.01896710
Axis 0.79958034 -0.59097488 0.10686427
Axis point 0.00000000 70.30088621 -31.35277554
Rotation angle (degrees) 0.02088807
Shift along axis 0.01429229
> fitmap #101 inMap #77
Fit map Cage_1unit.mrc in map 1x_Cage-units.mrc copy using 137770 points
correlation = 0.8898, correlation about mean = 0.83, overlap = 2.628e+06
steps = 28, shift = 0.0343, angle = 0.0104 degrees
Position of Cage_1unit.mrc (#101) relative to 1x_Cage-units.mrc copy (#77)
coordinates:
Matrix rotation and translation
0.99999997 -0.00008779 -0.00017529 0.00420018
0.00008777 0.99999998 -0.00012221 -0.02496282
0.00017530 0.00012220 0.99999997 -0.04200558
Axis 0.52899368 -0.75881091 0.37996275
Axis point 250.90000971 -0.00000000 8.23097443
Rotation angle (degrees) 0.01323606
Shift along axis 0.00520337
> fitmap #101 inMap #77
Fit map Cage_1unit.mrc in map 1x_Cage-units.mrc copy using 137770 points
correlation = 0.8898, correlation about mean = 0.83, overlap = 2.629e+06
steps = 28, shift = 0.0408, angle = 0.00857 degrees
Position of Cage_1unit.mrc (#101) relative to 1x_Cage-units.mrc copy (#77)
coordinates:
Matrix rotation and translation
0.99999997 -0.00004072 -0.00021919 0.01033688
0.00004066 0.99999996 -0.00025714 -0.00159285
0.00021920 0.00025713 0.99999993 -0.02045688
Axis 0.75555963 -0.64407691 0.11955994
Axis point 0.00000000 82.53068443 9.80056359
Rotation angle (degrees) 0.01949939
Shift along axis 0.00639022
> fitmap #101 inMap #77
Fit map Cage_1unit.mrc in map 1x_Cage-units.mrc copy using 137770 points
correlation = 0.8898, correlation about mean = 0.83, overlap = 2.628e+06
steps = 40, shift = 0.0266, angle = 0.00656 degrees
Position of Cage_1unit.mrc (#101) relative to 1x_Cage-units.mrc copy (#77)
coordinates:
Matrix rotation and translation
0.99999996 -0.00008754 -0.00022964 0.01810657
0.00008750 0.99999998 -0.00015321 -0.02303774
0.00022965 0.00015319 0.99999995 -0.02764488
Axis 0.52900888 -0.79297784 0.30221805
Axis point 146.03570489 0.00000000 33.92593040
Rotation angle (degrees) 0.01659261
Shift along axis 0.01949217
> fitmap #101 inMap #77
Fit map Cage_1unit.mrc in map 1x_Cage-units.mrc copy using 137770 points
correlation = 0.8898, correlation about mean = 0.83, overlap = 2.628e+06
steps = 28, shift = 0.0285, angle = 0.00521 degrees
Position of Cage_1unit.mrc (#101) relative to 1x_Cage-units.mrc copy (#77)
coordinates:
Matrix rotation and translation
0.99999998 -0.00011282 -0.00015330 0.01232302
0.00011281 0.99999998 -0.00011089 0.00267326
0.00015332 0.00011087 0.99999997 -0.02934014
Axis 0.50334135 -0.69595951 0.51214046
Axis point 155.69520308 0.00000000 115.44423807
Rotation angle (degrees) 0.01262137
Shift along axis -0.01068407
> close #68-86
> show #!113 models
> view orient
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #68, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #69, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #70, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #71, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #72, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> turn z 20 models #101 center #113
> volume copy #101
Opened Cage_1unit.mrc copy as #85, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #101 show
> hide #!69 models
> hide #!70 models
> hide #!71 models
> hide #!72 models
> hide #!73 models
> hide #!74 models
> hide #!75 models
> hide #!76 models
> hide #!77 models
> hide #!78 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> hide #!82 models
> hide #!83 models
> hide #!84 models
> hide #!85 models
> show #!85 models
> hide #!85 models
> hide #!68 models
> close #101
> show #!85 models
> show #!84 models
> show #!68 models
> hide #!68 models
> hide #!84 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/FliL.mrc
Opened FliL.mrc as #86, grid size 240,240,240, pixel 2.1, shown at level
7.62e-05, step 1, values float32
> volume #86 level 0.07316
> select add #86
2 models selected
> view matrix models #86,1,0,0,498.83,0,1,0,223.27,0,0,1,0
> view matrix models #86,1,0,0,514.39,0,1,0,252.22,0,0,1,528.36
> view matrix models #86,1,0,0,399.86,0,1,0,281.61,0,0,1,510.76
> ui mousemode right "rotate selected models"
> view matrix models
> #86,0.1353,0.98131,0.13687,467.35,-0.99048,0.13041,0.044131,319.2,0.025457,-0.14154,0.98961,506.53
> ui mousemode right "translate selected models"
> view matrix models
> #86,0.1353,0.98131,0.13687,495.47,-0.99048,0.13041,0.044131,275.14,0.025457,-0.14154,0.98961,501.39
> ui mousemode right "rotate selected models"
> view matrix models
> #86,-0.1069,0.98136,0.15968,508.9,-0.9931,-0.11316,0.030616,270.43,0.048115,-0.1553,0.98669,499.86
> ui mousemode right "translate selected models"
> view matrix models
> #86,-0.1069,0.98136,0.15968,503.57,-0.9931,-0.11316,0.030616,278.27,0.048115,-0.1553,0.98669,500.81
> view matrix models
> #86,-0.1069,0.98136,0.15968,503.92,-0.9931,-0.11316,0.030616,280.28,0.048115,-0.1553,0.98669,525.14
> fitmap #86 inMap #85
Fit map FliL.mrc in map Cage_1unit.mrc copy using 14592 points
correlation = 0.9999, correlation about mean = 0.9997, overlap = 2.903e+05
steps = 64, shift = 5.63, angle = 10.3 degrees
Position of FliL.mrc (#86) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999455 -0.00204101 0.00259991 0.31420489
0.00204469 0.99999692 -0.00141147 -0.16653610
-0.00259702 0.00141678 0.99999564 0.14822431
Axis 0.39334295 0.72277305 0.56822570
Axis point 38.12254097 0.00000000 -107.54208739
Rotation angle (degrees) 0.20598649
Shift along axis 0.08744733
> view orient
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #101, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #102, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #103, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #104, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #105, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #106, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #107, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #108, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #109, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #110, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #111, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #112, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #114, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #116, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #117, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #118, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #119, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> turn z 20 models #86 center #113
> volume copy #86
Opened FliL.mrc copy as #120, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #86 show
> select subtract #86
Nothing selected
> hide #!86 models
> close #86
> hide #!101 models
> hide #!102 models
> hide #!103 models
> hide #!104 models
> hide #!105 models
> hide #!106 models
> hide #!107 models
> hide #!108 models
> hide #!110 models
> hide #!111 models
> hide #!109 models
> hide #!114 models
> hide #!112 models
> hide #!116 models
> hide #!117 models
> hide #!118 models
> hide #!119 models
> hide #!120 models
> close #68-84
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/PflA.mrc
Opened PflA.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.000711, step 1, values float32
> volume #68 level 0.0411
> undo
> select add #68
2 models selected
> view matrix models #68,1,0,0,401.51,0,1,0,241.65,0,0,1,0
> view matrix models #68,1,0,0,223.32,0,1,0,212.57,0,0,1,406.89
> view matrix models #68,1,0,0,444.78,0,1,0,271.12,0,0,1,364.53
> view matrix models #68,1,0,0,336.38,0,1,0,279.56,0,0,1,462.33
> view matrix models #68,1,0,0,474.19,0,1,0,297.73,0,0,1,529.86
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.042315,0.9573,0.28598,441.55,-0.92125,-0.14816,0.35966,266.9,0.38667,-0.24824,0.88818,542.07
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.042315,0.9573,0.28598,505.35,-0.92125,-0.14816,0.35966,294.99,0.38667,-0.24824,0.88818,519.92
> view matrix models
> #68,-0.042315,0.9573,0.28598,505.54,-0.92125,-0.14816,0.35966,294.91,0.38667,-0.24824,0.88818,539.48
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.038005,0.95293,0.30079,505.7,-0.95979,-0.11859,0.25444,293.57,0.27814,-0.27902,0.91912,535.95
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.038005,0.95293,0.30079,506.84,-0.95979,-0.11859,0.25444,286.04,0.27814,-0.27902,0.91912,547.26
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.036982,0.9514,0.30572,506.88,-0.96966,-0.10814,0.21923,285.69,0.24163,-0.28833,0.92654,546.07
> view matrix models
> #68,-0.03487,0.94241,0.33264,506.97,-0.99863,-0.045858,0.025237,284.61,0.039038,-0.33131,0.94271,539.45
> view matrix models
> #68,-0.0349,0.9453,0.32433,506.96,-0.99416,-0.066011,0.08542,284.8,0.10216,-0.31945,0.94208,541.51
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.0349,0.9453,0.32433,508.13,-0.99416,-0.066011,0.08542,276.33,0.10216,-0.31945,0.94208,541.45
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9992, correlation about mean = 0.9984, overlap = 4.625e+05
steps = 596, shift = 3.53, angle = 21 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999293 -0.00026242 -0.00375131 0.08495241
0.00024684 0.99999135 -0.00415243 -0.14569757
0.00375237 0.00415147 0.99998435 -0.04781213
Axis 0.74118572 -0.66975932 0.04545525
Axis point -0.00000000 13.21488158 -9.57008431
Rotation angle (degrees) 0.32095945
Shift along axis 0.15837451
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9991, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 28, shift = 0.017, angle = 0.0229 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999234 -0.00033436 -0.00389921 0.07574281
0.00031675 0.99998975 -0.00451639 -0.14994111
0.00390067 0.00451512 0.99998220 -0.04087111
Axis 0.75570170 -0.65264596 0.05448107
Axis point 0.00000000 10.85274672 -11.13319295
Rotation angle (degrees) 0.34237775
Shift along axis 0.15287073
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9992, correlation about mean = 0.9983, overlap = 4.624e+05
steps = 28, shift = 0.0533, angle = 0.0636 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999221 -0.00033172 -0.00393347 0.08452511
0.00030958 0.99998412 -0.00562668 -0.20953142
0.00393527 0.00562542 0.99997644 -0.10894141
Axis 0.81860396 -0.57246034 0.04665539
Axis point 0.00000000 20.81462464 -18.57147482
Rotation angle (degrees) 0.39378221
Shift along axis 0.18405831
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9991, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 28, shift = 0.0411, angle = 0.00717 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999208 -0.00024045 -0.00397263 0.08443744
0.00021840 0.99998457 -0.00555013 -0.16818384
0.00397390 0.00554922 0.99997671 -0.09392650
Axis 0.81263595 -0.58180259 0.03359402
Axis point 0.00000000 17.85917675 -13.23290168
Rotation angle (degrees) 0.39128915
Shift along axis 0.16331132
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9991, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 40, shift = 0.0314, angle = 0.0183 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999259 -0.00027718 -0.00384063 0.07813636
0.00025476 0.99998292 -0.00583844 -0.19887820
0.00384218 0.00583742 0.99997559 -0.07847896
Axis 0.83476938 -0.54928473 0.03803116
Axis point 0.00000000 14.48614270 -17.97279294
Rotation angle (degrees) 0.40069949
Shift along axis 0.17148196
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9991, correlation about mean = 0.9981, overlap = 4.623e+05
steps = 24, shift = 0.00951, angle = 0.0355 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999307 -0.00021496 -0.00371824 0.07964098
0.00019101 0.99997923 -0.00644262 -0.21417190
0.00371955 0.00644187 0.99997234 -0.08155391
Axis 0.86573436 -0.49975988 0.02727790
Axis point 0.00000000 13.31068749 -19.80734408
Rotation angle (degrees) 0.42636258
Shift along axis 0.17375784
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9991, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 40, shift = 0.0549, angle = 0.0269 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999184 -0.00040609 -0.00401895 0.07618657
0.00037896 0.99997716 -0.00674850 -0.25604666
0.00402159 0.00674692 0.99996916 -0.13277984
Axis 0.85801078 -0.51120085 0.04991182
Axis point 0.00000000 20.97480342 -23.64753230
Rotation angle (degrees) 0.45059942
Shift along axis 0.18963289
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9991, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 40, shift = 0.0342, angle = 0.0187 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999230 -0.00036451 -0.00390770 0.06428961
0.00033931 0.99997917 -0.00644522 -0.23251757
0.00390997 0.00644385 0.99997160 -0.09925531
Axis 0.85408777 -0.51803373 0.04663831
Axis point 0.00000000 16.54003344 -22.40686120
Rotation angle (degrees) 0.43233052
Shift along axis 0.17073181
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9991, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 40, shift = 0.0313, angle = 0.00487 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999199 -0.00036258 -0.00398620 0.08113432
0.00033675 0.99997896 -0.00647761 -0.23625705
0.00398847 0.00647621 0.99997108 -0.12433097
Axis 0.85066913 -0.52369170 0.04592429
Axis point 0.00000000 20.42874448 -21.41815652
Rotation angle (degrees) 0.43624851
Shift along axis 0.18703451
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9992, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 24, shift = 0.0151, angle = 0.0234 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999135 -0.00044530 -0.00413615 0.08046560
0.00042003 0.99998126 -0.00610804 -0.22916128
0.00413879 0.00610625 0.99997280 -0.13163676
Axis 0.82647483 -0.55992048 0.05855260
Axis point 0.00000000 23.26082349 -20.43735226
Rotation angle (degrees) 0.42338445
Shift along axis 0.18710721
> fitmap #68 inMap #85
Fit map PflA.mrc in map Cage_1unit.mrc copy using 25739 points
correlation = 0.9992, correlation about mean = 0.9982, overlap = 4.623e+05
steps = 24, shift = 0.00258, angle = 0.012 degrees
Position of PflA.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999118 -0.00045233 -0.00417643 0.07940072
0.00042768 0.99998248 -0.00590330 -0.22117303
0.00417903 0.00590147 0.99997386 -0.13031244
Axis 0.81472164 -0.57666273 0.06073499
Axis point 0.00000000 23.89173143 -19.53188214
Rotation angle (degrees) 0.41509240
Shift along axis 0.18431720
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #69, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #70, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #71, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #72, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> close #68
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/PflB.mrc
Opened PflB.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.00237, step 1, values float32
Drag select of 68 PflB.mrc
> volume #68 level 0.09102
> view matrix models #68,1,0,0,407.65,0,1,0,-79.196,0,0,1,552.23
> ui mousemode right "rotate selected models"
> view matrix models
> #68,0.38169,0.79988,-0.46315,409.85,-0.61309,-0.15588,-0.77448,29.797,-0.69169,0.57956,0.4309,571.97
> view matrix models
> #68,0.092556,0.69964,-0.70847,437.31,-0.98383,-0.045321,-0.17328,59.745,-0.15335,0.71305,0.68413,522.03
> view matrix models
> #68,-0.46086,0.88582,-0.054066,478.64,-0.87332,-0.46351,-0.14987,74.302,-0.15782,-0.021855,0.98723,566.45
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.46086,0.88582,-0.054066,549.17,-0.87332,-0.46351,-0.14987,203.48,-0.15782,-0.021855,0.98723,609.25
> view matrix models
> #68,-0.46086,0.88582,-0.054066,522.78,-0.87332,-0.46351,-0.14987,201.51,-0.15782,-0.021855,0.98723,569.67
> view matrix models
> #68,-0.46086,0.88582,-0.054066,523.49,-0.87332,-0.46351,-0.14987,290.77,-0.15782,-0.021855,0.98723,569.06
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.27197,0.96218,-0.015827,503.85,-0.94047,-0.26924,-0.2074,284.9,-0.20382,-0.041521,0.97813,573.91
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.27197,0.96218,-0.015827,505.31,-0.94047,-0.26924,-0.2074,281.98,-0.20382,-0.041521,0.97813,560.34
> fitmap #68 inMap #85
Fit map PflB.mrc in map Cage_1unit.mrc copy using 14909 points
correlation = 0.9998, correlation about mean = 0.9991, overlap = 5.874e+05
steps = 112, shift = 5.2, angle = 15.9 degrees
Position of PflB.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99998861 0.00408678 -0.00246558 -0.29451567
-0.00409570 0.99998505 -0.00362351 0.22422552
0.00245074 0.00363357 0.99999041 -0.48359146
Axis 0.60520184 -0.40999496 -0.68237443
Axis point 60.43856855 81.09226497 0.00000000
Rotation angle (degrees) 0.34352388
Shift along axis 0.05981769
> fitmap #68 inMap #85
Fit map PflB.mrc in map Cage_1unit.mrc copy using 14909 points
correlation = 0.9998, correlation about mean = 0.9991, overlap = 5.874e+05
steps = 48, shift = 0.0103, angle = 0.00622 degrees
Position of PflB.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99998892 0.00398937 -0.00250227 -0.29829442
-0.00399834 0.99998556 -0.00359293 0.22018646
0.00248789 0.00360289 0.99999043 -0.48923029
Axis 0.60710723 -0.42101671 -0.67391821
Axis point 60.65426491 83.44825203 0.00000000
Rotation angle (degrees) 0.33955514
Shift along axis 0.05590232
> fitmap #68 inMap #85
Fit map PflB.mrc in map Cage_1unit.mrc copy using 14909 points
correlation = 0.9998, correlation about mean = 0.9992, overlap = 5.874e+05
steps = 44, shift = 0.00958, angle = 0.00106 degrees
Position of PflB.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99998892 0.00398001 -0.00251529 -0.28850107
-0.00398905 0.99998556 -0.00360226 0.21760830
0.00250091 0.00361226 0.99999036 -0.49075341
Axis 0.60818174 -0.42286434 -0.67178919
Axis point 60.84774927 82.16223612 0.00000000
Rotation angle (degrees) 0.33983588
Shift along axis 0.06220296
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflB.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> select subtract #68
Nothing selected
> hide #!68 models
> show #!68 models
> close #68
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/MotBpg.mrc
Opened MotBpg.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.000657, step 1, values float32
> volume #68 level 0.09497
> select add #68
2 models selected
> view matrix models #68,1,0,0,436.63,0,1,0,-16.129,0,0,1,509.43
> view matrix models #68,1,0,0,450,0,1,0,294.61,0,0,1,686.32
> view matrix models #68,1,0,0,433.23,0,1,0,265.71,0,0,1,543.47
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.43094,0.84858,0.30692,507.03,-0.85565,-0.27622,-0.43769,300.54,-0.28664,-0.45124,0.84512,555.02
> view matrix models
> #68,-0.14677,0.91125,0.38482,493.68,-0.92278,-0.26626,0.27854,305.11,0.35628,-0.31423,0.87996,524.55
> ui mousemode right "translate selected models"
> ui favorite true Toolbar
> view matrix models
> #68,-0.14677,0.91125,0.38482,491.43,-0.92278,-0.26626,0.27854,288.81,0.35628,-0.31423,0.87996,522.7
> view matrix models
> #68,-0.14677,0.91125,0.38482,490.05,-0.92278,-0.26626,0.27854,276.94,0.35628,-0.31423,0.87996,521.92
> view matrix models
> #68,-0.14677,0.91125,0.38482,494.6,-0.92278,-0.26626,0.27854,277.4,0.35628,-0.31423,0.87996,520.42
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.28778,0.88737,0.36022,501.28,-0.88159,-0.3924,0.26234,274.79,0.37415,-0.24207,0.89522,519.91
> fitmap #68 inMap #85
Fit map MotBpg.mrc in map Cage_1unit.mrc copy using 5155 points
correlation = 0.9991, correlation about mean = 0.997, overlap = 2.596e+05
steps = 72, shift = 5.32, angle = 30.2 degrees
Position of MotBpg.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99965183 -0.01550695 0.02134860 0.35415820
0.01575621 0.99980907 -0.01155763 -0.67289144
-0.02116530 0.01188998 0.99970530 1.01812509
Axis 0.40604684 0.73622169 0.54139042
Axis point 43.16596098 0.00000000 -12.08873735
Rotation angle (degrees) 1.65453255
Shift along axis 0.19961072
> fitmap #68 inMap #85
Fit map MotBpg.mrc in map Cage_1unit.mrc copy using 5155 points
correlation = 0.9992, correlation about mean = 0.9972, overlap = 2.597e+05
steps = 48, shift = 0.0409, angle = 0.0588 degrees
Position of MotBpg.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99967194 -0.01452884 0.02109346 0.36260066
0.01477909 0.99982167 -0.01175666 -0.66531550
-0.02091889 0.01206455 0.99970839 1.01594289
Axis 0.42166757 0.74367553 0.51879010
Axis point 44.15181331 0.00000000 -12.80168874
Rotation angle (degrees) 1.61861639
Shift along axis 0.18517920
> fitmap #68 inMap #85
Fit map MotBpg.mrc in map Cage_1unit.mrc copy using 5155 points
correlation = 0.9992, correlation about mean = 0.9972, overlap = 2.597e+05
steps = 40, shift = 0.00178, angle = 0.0302 degrees
Position of MotBpg.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99968237 -0.01419686 0.02082349 0.36313363
0.01443757 0.99983016 -0.01145525 -0.64704704
-0.02065733 0.01175225 0.99971755 1.00186887
Axis 0.41822599 0.74753232 0.51602563
Axis point 44.05217338 0.00000000 -13.04761105
Rotation angle (degrees) 1.58988496
Shift along axis 0.18517336
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #142, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #143, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #144, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #145, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #146, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #147, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #148, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #149, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #150, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #151, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #152, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #153, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #154, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #155, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #156, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened MotBpg.mrc copy as #157, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> select subtract #68
Nothing selected
> hide #!68 models
> close #68
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/Top_Cage.mrc
Opened Top_Cage.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.000738, step 1, values float32
> volume #68 level 0.04182
> select add #68
2 models selected
> view matrix models
> #68,0.90354,0.37462,0.20801,-2.5255,-0.31375,0.90903,-0.27429,-10.606,-0.29184,0.18257,0.93888,-9.3775
> ui mousemode right "translate selected models"
> view matrix models
> #68,0.90354,0.37462,0.20801,453.63,-0.31375,0.90903,-0.27429,144.76,-0.29184,0.18257,0.93888,577.65
> ui mousemode right "rotate selected models"
> view matrix models
> #68,0.49278,0.82479,0.27728,440.8,-0.76035,0.5631,-0.32371,129.8,-0.42313,-0.051308,0.90462,573.09
> view matrix models
> #68,0.48978,0.86806,0.081147,440.54,-0.70455,0.4489,-0.54964,131.25,-0.51354,0.21203,0.83145,570.35
> view matrix models
> #68,-0.45648,0.88956,-0.017704,409.64,-0.79819,-0.41822,-0.43358,127.42,-0.3931,-0.18379,0.90094,573.93
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.45648,0.88956,-0.017704,527.37,-0.79819,-0.41822,-0.43358,306.2,-0.3931,-0.18379,0.90094,634.52
> view matrix models
> #68,-0.45648,0.88956,-0.017704,535.7,-0.79819,-0.41822,-0.43358,291.77,-0.3931,-0.18379,0.90094,594.13
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.3663,0.92573,-0.094063,538.59,-0.91963,-0.37557,-0.11503,288.2,-0.14181,0.044369,0.9889,602.65
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.3663,0.92573,-0.094063,558.76,-0.91963,-0.37557,-0.11503,270.19,-0.14181,0.044369,0.9889,568.39
> view matrix models
> #68,-0.3663,0.92573,-0.094063,564.95,-0.91963,-0.37557,-0.11503,288.23,-0.14181,0.044369,0.9889,569.8
> view matrix models
> #68,-0.3663,0.92573,-0.094063,536.84,-0.91963,-0.37557,-0.11503,291.81,-0.14181,0.044369,0.9889,580.3
> view matrix models
> #68,-0.3663,0.92573,-0.094063,524.63,-0.91963,-0.37557,-0.11503,281.32,-0.14181,0.044369,0.9889,551.08
> view matrix models
> #68,-0.3663,0.92573,-0.094063,523.76,-0.91963,-0.37557,-0.11503,294.44,-0.14181,0.044369,0.9889,557.25
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9975, correlation about mean = 0.9946, overlap = 3.572e+05
steps = 1292, shift = 11.8, angle = 14.7 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99937634 0.03395505 0.00969064 -3.20472401
-0.03388506 0.99939908 -0.00729578 3.75219971
-0.00993251 0.00696286 0.99992641 0.23810801
Axis 0.19790966 0.27236896 -0.94161930
Axis point 107.69299818 97.31242980 0.00000000
Rotation angle (degrees) 2.06441888
Shift along axis 0.16352979
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9976, correlation about mean = 0.9949, overlap = 3.573e+05
steps = 84, shift = 0.105, angle = 0.13 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99944567 0.03184906 0.00969092 -3.02787993
-0.03178753 0.99947390 -0.00643600 3.46484438
-0.00989077 0.00612438 0.99993231 0.30833487
Axis 0.18537788 0.28900479 -0.93920779
Axis point 106.01368430 97.79052251 0.00000000
Rotation angle (degrees) 1.94142658
Shift along axis 0.15046416
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9976, correlation about mean = 0.995, overlap = 3.573e+05
steps = 48, shift = 0.0321, angle = 0.0504 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99947045 0.03104996 0.00972812 -2.96470718
-0.03099187 0.99950121 -0.00606528 3.36213560
-0.00991156 0.00576057 0.99993426 0.34090219
Axis 0.17879494 0.29693239 -0.93801041
Axis point 105.48246204 98.13568771 0.00000000
Rotation angle (degrees) 1.89517278
Shift along axis 0.14848252
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9977, correlation about mean = 0.995, overlap = 3.573e+05
steps = 48, shift = 0.0177, angle = 0.0327 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99948676 0.03053769 0.00967333 -2.92344860
-0.03048237 0.99951837 -0.00581389 3.29737615
-0.00984618 0.00551604 0.99993629 0.35317105
Axis 0.17414541 0.30002243 -0.93790187
Axis point 105.15336154 98.34897780 0.00000000
Rotation angle (degrees) 1.86416584
Shift along axis 0.14894187
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9978, correlation about mean = 0.9952, overlap = 3.573e+05
steps = 64, shift = 0.0575, angle = 0.0996 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99953470 0.02892553 0.00967554 -2.79992618
-0.02887666 0.99956968 -0.00515112 3.09686888
-0.00982034 0.00486933 0.99993990 0.40310059
Axis 0.16209338 0.31537014 -0.93502268
Axis point 104.17170371 99.29096843 0.00000000
Rotation angle (degrees) 1.77126662
Shift along axis 0.14590228
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9978, correlation about mean = 0.9954, overlap = 3.574e+05
steps = 64, shift = 0.055, angle = 0.0955 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99957805 0.02739594 0.00964928 -2.68093829
-0.02735376 0.99961577 -0.00447508 2.90480593
-0.00976814 0.00420924 0.99994341 0.45090427
Axis 0.14785207 0.33058501 -0.93212301
Axis point 103.05077783 100.22102892 0.00000000
Rotation angle (degrees) 1.68292069
Shift along axis 0.14360477
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9979, correlation about mean = 0.9954, overlap = 3.574e+05
steps = 44, shift = 0.015, angle = 0.0318 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99959196 0.02689380 0.00962072 -2.64271356
-0.02685404 0.99963036 -0.00423696 2.84371037
-0.00973108 0.00397688 0.99994472 0.46489272
Axis 0.14232213 0.33531104 -0.93129529
Axis point 102.70679364 100.58742232 0.00000000
Rotation angle (degrees) 1.65358521
Shift along axis 0.14445845
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9979, correlation about mean = 0.9955, overlap = 3.574e+05
steps = 44, shift = 0.0208, angle = 0.0334 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99960629 0.02635372 0.00962599 -2.60046347
-0.02631610 0.99964559 -0.00401325 2.77535799
-0.00972831 0.00375835 0.99994559 0.48270468
Axis 0.13718887 0.34165376 -0.92975907
Axis point 102.25087552 100.94542782 0.00000000
Rotation angle (degrees) 1.62308837
Shift along axis 0.14265781
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9979, correlation about mean = 0.9955, overlap = 3.574e+05
steps = 44, shift = 0.0172, angle = 0.0314 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99961955 0.02585391 0.00960431 -2.56134101
-0.02581858 0.99965946 -0.00378356 2.71305218
-0.00969883 0.00353415 0.99994670 0.49743324
Axis 0.13151056 0.34690699 -0.92863368
Axis point 101.83210039 101.29245070 0.00000000
Rotation angle (degrees) 1.59427662
Shift along axis 0.14240012
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9979, correlation about mean = 0.9956, overlap = 3.574e+05
steps = 40, shift = 0.0139, angle = 0.024 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99962950 0.02547464 0.00958238 -2.53104016
-0.02544111 0.99966980 -0.00360369 2.66484525
-0.00967099 0.00335857 0.99994757 0.50862083
Axis 0.12686826 0.35084048 -0.92780138
Axis point 101.47063184 101.53774197 0.00000000
Rotation angle (degrees) 1.57233215
Shift along axis 0.14192782
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9979, correlation about mean = 0.9956, overlap = 3.574e+05
steps = 40, shift = 0.0116, angle = 0.021 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99963815 0.02513341 0.00958095 -2.50491526
-0.02510121 0.99967888 -0.00346524 2.62310776
-0.00966493 0.00322349 0.99994808 0.51878608
Axis 0.12338700 0.35502839 -0.92667712
Axis point 101.19805179 101.81601104 0.00000000
Rotation angle (degrees) 1.55317561
Shift along axis 0.14145657
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9956, overlap = 3.574e+05
steps = 40, shift = 0.0108, angle = 0.0197 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99964611 0.02481785 0.00957349 -2.48046550
-0.02478698 0.99968719 -0.00332835 2.58406256
-0.00965307 0.00308987 0.99994861 0.52823146
Axis 0.11977337 0.35879609 -0.92569958
Axis point 100.92072899 102.06662235 0.00000000
Rotation angle (degrees) 1.53531857
Shift along axis 0.14107418
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9957, overlap = 3.574e+05
steps = 40, shift = 0.0107, angle = 0.0187 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99965358 0.02451835 0.00956531 -2.45694901
-0.02448877 0.99969497 -0.00319600 2.54664187
-0.00964072 0.00296065 0.99994912 0.53734625
Axis 0.11617408 0.36241200 -0.92474922
Axis point 100.63751262 102.29649798 0.00000000
Rotation angle (degrees) 1.51837385
Shift along axis 0.14058926
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9957, overlap = 3.575e+05
steps = 40, shift = 0.0113, angle = 0.0191 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99966109 0.02421219 0.00956038 -2.43287838
-0.02418390 0.99970281 -0.00306198 2.50815566
-0.00963164 0.00282973 0.99994959 0.54697485
Axis 0.11244821 0.36629557 -0.92367903
Axis point 100.33251548 102.53568686 0.00000000
Rotation angle (degrees) 1.50117559
Shift along axis 0.13992428
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9957, overlap = 3.575e+05
steps = 40, shift = 0.00508, angle = 0.00888 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99966457 0.02407381 0.00954581 -2.42145773
-0.02404622 0.99970634 -0.00299259 2.49047778
-0.00961502 0.00276204 0.99994994 0.55067580
Axis 0.11042558 0.36767670 -0.92337427
Axis point 100.17937093 102.62179568 0.00000000
Rotation angle (degrees) 1.49310357
Shift along axis 0.13981992
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9957, overlap = 3.575e+05
steps = 28, shift = 0.032, angle = 0.00229 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99966384 0.02409771 0.00956155 -2.44120556
-0.02406981 0.99970569 -0.00302061 2.51898551
-0.00963149 0.00278945 0.99994970 0.54323570
Axis 0.11135702 0.36785830 -0.92319006
Axis point 101.04630552 103.42217435 0.00000000
Rotation angle (degrees) 1.49487600
Shift along axis 0.15327455
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9958, overlap = 3.575e+05
steps = 44, shift = 0.0574, angle = 0.044 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99968065 0.02340234 0.00953103 -2.36817811
-0.02337765 0.99972305 -0.00269171 2.40505267
-0.00959135 0.00246804 0.99995093 0.57217285
Axis 0.10156959 0.37642348 -0.92086317
Axis point 99.43609564 103.14929180 0.00000000
Rotation angle (degrees) 1.45547390
Shift along axis 0.13789051
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9957, overlap = 3.575e+05
steps = 28, shift = 0.0348, angle = 0.00375 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99967963 0.02343437 0.00955900 -2.39026690
-0.02340913 0.99972218 -0.00274168 2.43737181
-0.00962056 0.00251703 0.99995053 0.56387076
Axis 0.10333408 0.37688037 -0.92047991
Axis point 100.42952624 104.04391737 0.00000000
Rotation angle (degrees) 1.45805705
Shift along axis 0.15256984
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9958, overlap = 3.575e+05
steps = 44, shift = 0.0568, angle = 0.0401 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99969458 0.02280304 0.00952337 -2.32112670
-0.02278078 0.99973749 -0.00243686 2.32999012
-0.00957640 0.00221916 0.99995166 0.59086948
Axis 0.09379114 0.38474732 -0.91824437
Axis point 98.78396743 103.67339369 0.00000000
Rotation angle (degrees) 1.42229507
Shift along axis 0.13619376
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.998, correlation about mean = 0.9958, overlap = 3.575e+05
steps = 28, shift = 0.0352, angle = 0.00339 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99969362 0.02283466 0.00954750 -2.34318840
-0.02281193 0.99973667 -0.00248096 2.36251942
-0.00960161 0.00226240 0.99995132 0.58248696
Axis 0.09538762 0.38508289 -0.91793920
Axis point 99.79927098 104.58744289 0.00000000
Rotation angle (degrees) 1.42472771
Shift along axis 0.15156702
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9959, overlap = 3.575e+05
steps = 44, shift = 0.0555, angle = 0.0382 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99970742 0.02223757 0.00951175 -2.27685755
-0.02221778 0.99975075 -0.00217935 2.25892973
-0.00955781 0.00196738 0.99995237 0.60909508
Axis 0.08541105 0.39278025 -0.91565748
Axis point 98.11543981 104.19741397 0.00000000
Rotation angle (degrees) 1.39099724
Shift along axis 0.13507171
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9959, overlap = 3.575e+05
steps = 28, shift = 0.0341, angle = 0.00324 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99970669 0.02226283 0.00952961 -2.29742609
-0.02224255 0.99975010 -0.00222690 2.29033475
-0.00957677 0.00201429 0.99995209 0.60016360
Axis 0.08723390 0.39298486 -0.91539781
Axis point 99.13533221 105.09034777 0.00000000
Rotation angle (degrees) 1.39295799
Shift along axis 0.15026502
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9959, overlap = 3.575e+05
steps = 28, shift = 0.0541, angle = 0.0221 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99971432 0.02194485 0.00946673 -2.24694412
-0.02192669 0.99975752 -0.00201588 2.21373640
-0.00950863 0.00180772 0.99995314 0.61944327
Axis 0.07973802 0.39571552 -0.91490495
Axis point 97.46118489 104.13186701 0.00000000
Rotation angle (degrees) 1.37385602
Shift along axis 0.13011125
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9959, overlap = 3.575e+05
steps = 28, shift = 0.0518, angle = 0.00859 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99971244 0.02199738 0.00954261 -2.28148792
-0.02197795 0.99975615 -0.00213443 2.26361783
-0.00958720 0.00192408 0.99995217 0.60668492
Axis 0.08432839 0.39748241 -0.91372669
Axis point 99.05616245 105.59767773 0.00000000
Rotation angle (degrees) 1.37888264
Shift along axis 0.15300986
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9959, overlap = 3.575e+05
steps = 28, shift = 0.057, angle = 0.0211 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99971943 0.02172442 0.00943581 -2.22985583
-0.02170733 0.99976252 -0.00190809 2.18788813
-0.00947499 0.00170273 0.99995364 0.62342791
Axis 0.07600495 0.39805819 -0.91420617
Axis point 97.23757200 104.35850937 0.00000000
Rotation angle (degrees) 1.36112099
Shift along axis 0.13148506
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9959, overlap = 3.575e+05
steps = 28, shift = 0.053, angle = 0.0106 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99971699 0.02179286 0.00953556 -2.26689368
-0.02177426 0.99976079 -0.00204905 2.24092373
-0.00957790 0.00184083 0.99995241 0.61144959
Axis 0.08149047 0.40041470 -0.91270333
Axis point 98.91197544 105.88207425 0.00000000
Rotation angle (degrees) 1.36761252
Shift along axis 0.15449647
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.996, overlap = 3.575e+05
steps = 28, shift = 0.0569, angle = 0.0194 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99972328 0.02154623 0.00943620 -2.21724593
-0.02152980 0.99976649 -0.00183819 2.16801775
-0.00947357 0.00163452 0.99995377 0.62808803
Axis 0.07361816 0.40086968 -0.91317242
Axis point 97.10050847 104.60543191 0.00000000
Rotation angle (degrees) 1.35149915
Shift along axis 0.13231035
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.9959, overlap = 3.575e+05
steps = 28, shift = 0.0514, angle = 0.00918 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99972181 0.02159380 0.00948280 -2.25874460
-0.02157590 0.99976522 -0.00198429 2.20944588
-0.00952339 0.00177914 0.99995305 0.60811513
Axis 0.07953437 0.40166688 -0.91232560
Axis point 98.39676926 106.43259973 0.00000000
Rotation angle (degrees) 1.35569589
Shift along axis 0.15301440
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.996, overlap = 3.575e+05
steps = 40, shift = 0.0223, angle = 0.0179 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99972679 0.02136963 0.00946561 -2.22529927
-0.02135383 0.99977039 -0.00176560 2.17615109
-0.00950114 0.00156299 0.99995362 0.62807517
Axis 0.07102865 0.40473036 -0.91167333
Axis point 97.92594143 105.88444964 0.00000000
Rotation angle (degrees) 1.34263971
Shift along axis 0.15009505
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.996, overlap = 3.575e+05
steps = 28, shift = 0.0462, angle = 0.0161 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99973259 0.02111691 0.00941991 -2.18326100
-0.02110228 0.99977594 -0.00164809 2.11450725
-0.00945257 0.00144886 0.99995425 0.64085852
Axis 0.06681820 0.40718289 -0.91089924
Axis point 96.55317612 105.02736591 0.00000000
Rotation angle (degrees) 1.32791747
Shift along axis 0.13135205
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.996, overlap = 3.575e+05
steps = 28, shift = 0.0532, angle = 0.0106 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99973016 0.02119361 0.00950568 -2.22099763
-0.02117747 0.99977410 -0.00179302 2.16816026
-0.00954150 0.00159123 0.99995319 0.62778736
Axis 0.07265680 0.40892625 -0.90967044
Axis point 98.26683968 106.57515489 0.00000000
Rotation angle (degrees) 1.33449638
Shift along axis 0.15416746
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.996, overlap = 3.575e+05
steps = 28, shift = 0.0618, angle = 0.0193 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99973603 0.02095441 0.00941751 -2.16911953
-0.02094052 0.99977946 -0.00157029 2.09170877
-0.00944830 0.00137266 0.99995440 0.64722055
Axis 0.06392028 0.40976191 -0.90995021
Axis point 96.24679610 105.12346532 0.00000000
Rotation angle (degrees) 1.31909127
Shift along axis 0.12951337
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9981, correlation about mean = 0.996, overlap = 3.575e+05
steps = 28, shift = 0.055, angle = 0.0107 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99973363 0.02102641 0.00951208 -2.20731123
-0.02101100 0.99977775 -0.00171473 2.14666602
-0.00954599 0.00151441 0.99995327 0.63407984
Axis 0.06979122 0.41190107 -0.90855198
Axis point 98.01938872 106.73103354 0.00000000
Rotation angle (degrees) 1.32561550
Shift along axis 0.15406860
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.996, overlap = 3.575e+05
steps = 28, shift = 0.0574, angle = 0.0177 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99973912 0.02080551 0.00942025 -2.15904812
-0.02079209 0.99978264 -0.00151785 2.07596311
-0.00944975 0.00132158 0.99995446 0.65085565
Axis 0.06204283 0.41231735 -0.90892524
Axis point 96.15611001 105.36738581 0.00000000
Rotation angle (degrees) 1.31120530
Shift along axis 0.13042302
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.576e+05
steps = 44, shift = 0.0263, angle = 0.0194 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99974372 0.02053766 0.00951965 -2.14096399
-0.02052587 0.99978841 -0.00133293 2.07406276
-0.00954498 0.00113718 0.99995378 0.67256592
Axis 0.05447892 0.42047526 -0.90566694
Axis point 96.95758045 105.84365516 0.00000000
Rotation angle (degrees) 1.29902564
Shift along axis 0.14633397
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0271, angle = 0.0115 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99974651 0.02048856 0.00932983 -2.13788785
-0.02047656 0.99978936 -0.00137853 2.04639281
-0.00935608 0.00118714 0.99995550 0.64826639
Axis 0.05689022 0.41433416 -0.90834504
Axis point 96.06830250 105.91540505 0.00000000
Rotation angle (degrees) 1.29209025
Shift along axis 0.13741599
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0205, angle = 0.0113 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99974655 0.02041311 0.00948945 -2.12951654
-0.02040010 0.99979080 -0.00146389 2.02731862
-0.00951731 0.00126993 0.99995388 0.66382333
Axis 0.06061022 0.42139037 -0.90485168
Axis point 95.71922290 105.87914449 0.00000000
Rotation angle (degrees) 1.29226876
Shift along axis 0.12456042
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.996, overlap = 3.575e+05
steps = 28, shift = 0.0533, angle = 0.00291 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99974547 0.02045957 0.00950372 -2.16172994
-0.02044640 0.99978983 -0.00147923 2.07465967
-0.00953196 0.00128454 0.99995372 0.65185920
Axis 0.06114152 0.42111717 -0.90494312
Axis point 97.24258479 107.32126644 0.00000000
Rotation angle (degrees) 1.29507568
Shift along axis 0.15160785
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0563, angle = 0.019 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975119 0.02022532 0.00940242 -2.11272843
-0.02021429 0.99979484 -0.00126475 2.00327258
-0.00942604 0.00107437 0.99995498 0.66841728
Axis 0.05236548 0.42150800 -0.90531147
Axis point 95.34414340 105.96538217 0.00000000
Rotation angle (degrees) 1.27978696
Shift along axis 0.12863555
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.00648, angle = 0.00789 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975204 0.02014580 0.00948266 -2.10847005
-0.02013395 0.99979636 -0.00134277 1.99426607
-0.00950774 0.00115151 0.99995412 0.67237715
Axis 0.05592322 0.42577717 -0.90309822
Axis point 95.35434882 106.17813789 0.00000000
Rotation angle (degrees) 1.27785168
Shift along axis 0.12397792
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0541, angle = 0.00325 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975088 0.02019700 0.00949588 -2.14142015
-0.02018493 0.99979531 -0.00136386 2.04264472
-0.00952145 0.00117185 0.99995396 0.65960924
Axis 0.05671738 0.42536925 -0.90324091
Axis point 96.90946573 107.64762907 0.00000000
Rotation angle (degrees) 1.28089128
Shift along axis 0.15163645
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0564, angle = 0.0179 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975615 0.01998104 0.00939725 -2.09359929
-0.01997100 0.99979986 -0.00115883 1.97294691
-0.00941849 0.00097087 0.99995515 0.67590004
Axis 0.04816963 0.42557642 -0.90363953
Axis point 94.99781964 106.24712010 0.00000000
Rotation angle (degrees) 1.26669417
Shift along axis 0.12802178
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.00615, angle = 0.00767 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975694 0.01990528 0.00947393 -2.08970984
-0.01989442 0.99980129 -0.00123761 1.96458576
-0.00949665 0.00104883 0.99995433 0.67962163
Axis 0.05178921 0.42969535 -0.90148754
Axis point 95.02465355 106.46358109 0.00000000
Rotation angle (degrees) 1.26487630
Shift along axis 0.12327852
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0514, angle = 0.0032 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975579 0.01995456 0.00949175 -2.12111348
-0.01994349 0.99980029 -0.00125761 2.01070595
-0.00951492 0.00106800 0.99995414 0.66798171
Axis 0.05255022 0.42947945 -0.90154638
Axis point 96.51249711 107.87285547 0.00000000
Rotation angle (degrees) 1.26791972
Shift along axis 0.14987540
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0553, angle = 0.0192 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976146 0.01971733 0.00938934 -2.07239455
-0.01970839 0.99980520 -0.00104274 1.93982421
-0.00940804 0.00085744 0.99995535 0.68404782
Axis 0.04346379 0.42996039 -0.90180096
Axis point 94.60068329 106.52967545 0.00000000
Rotation angle (degrees) 1.25255330
Shift along axis 0.12709846
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.00404, angle = 0.00665 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976183 0.01966508 0.00945995 -2.07098084
-0.01965536 0.99980616 -0.00111798 1.93497036
-0.00948007 0.00093177 0.99995461 0.68694486
Axis 0.04691327 0.43348591 -0.89993839
Axis point 94.67034087 106.75345058 0.00000000
Rotation angle (degrees) 1.25179392
Shift along axis 0.12341787
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0512, angle = 0.00396 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976053 0.01971894 0.00948495 -2.10277210
-0.01970885 0.99980507 -0.00115377 1.98188237
-0.00950582 0.00096655 0.99995433 0.67504670
Axis 0.04839326 0.43343726 -0.89988345
Axis point 96.19382230 108.17284809 0.00000000
Rotation angle (degrees) 1.25528861
Shift along axis 0.14979832
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9962, overlap = 3.575e+05
steps = 28, shift = 0.0553, angle = 0.0182 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976582 0.01949757 0.00938429 -2.05499940
-0.01948951 0.99980958 -0.00094809 1.91267567
-0.00940095 0.00076497 0.99995550 0.69064078
Axis 0.03955298 0.43373264 -0.90017307
Axis point 94.27781788 106.78675754 0.00000000
Rotation angle (degrees) 1.24085551
Shift along axis 0.12661227
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9962, overlap = 3.575e+05
steps = 28, shift = 0.00269, angle = 0.00551 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976560 0.01948046 0.00944282 -2.05610539
-0.01947166 0.99980986 -0.00102225 1.91189455
-0.00946091 0.00083814 0.99995487 0.69239174
Axis 0.04292855 0.43620480 -0.89882285
Axis point 94.38045776 106.95437987 0.00000000
Rotation angle (degrees) 1.24160552
Shift along axis 0.12337446
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9961, overlap = 3.575e+05
steps = 28, shift = 0.0503, angle = 0.00492 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976411 0.01953868 0.00948053 -2.08828000
-0.01952936 0.99980868 -0.00107328 1.95891416
-0.00949965 0.00088787 0.99995446 0.68092314
Axis 0.04510594 0.43653880 -0.89855402
Axis point 95.91158040 108.38122877 0.00000000
Rotation angle (degrees) 1.24567396
Shift along axis 0.14910198
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9962, overlap = 3.575e+05
steps = 28, shift = 0.0548, angle = 0.0181 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976936 0.01931743 0.00937984 -2.04069799
-0.01931010 0.99981314 -0.00086899 1.89017260
-0.00939484 0.00068766 0.99995561 0.69633385
Axis 0.03622077 0.43685689 -0.89880149
Axis point 94.00037382 106.99857274 0.00000000
Rotation angle (degrees) 1.23128694
Shift along axis 0.12595336
> fitmap #68 inMap #85
Fit map Top_Cage.mrc in map Cage_1unit.mrc copy using 15638 points
correlation = 0.9982, correlation about mean = 0.9962, overlap = 3.575e+05
steps = 28, shift = 0.00283, angle = 0.00552 degrees
Position of Top_Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99976923 0.01929625 0.00943661 -2.04156947
-0.01928818 0.99981349 -0.00094366 1.88897032
-0.00945302 0.00076142 0.99995501 0.69797612
Axis 0.03965858 0.43935504 -0.89743766
Axis point 94.10579927 107.17852091 0.00000000
Rotation angle (degrees) 1.23178232
Shift along axis 0.12257282
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #158, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #159, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #160, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #161, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #162, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #163, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #164, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #165, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #166, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #167, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #168, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #169, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #170, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #171, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #172, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #173, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #174, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Top_Cage.mrc copy as #175, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> close #68
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/Unknown.mrc
Opened Unknown.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.000178, step 1, values float32
> volume #68 level 0.000178
> volume #68 level 0.09562
> select add #68
2 models selected
> view matrix models #68,1,0,0,457.77,0,1,0,189.53,0,0,1,607.79
> ui mousemode right "rotate selected models"
> view matrix models
> #68,0.5343,0.31456,0.78459,457.18,0.14402,0.88073,-0.45118,194.42,-0.83294,0.35406,0.42527,651.45
> view matrix models
> #68,0.64738,0.27279,0.71168,453.46,0.090638,0.89958,-0.42726,196.4,-0.75676,0.3411,0.55764,645.05
> view matrix models
> #68,0.52314,0.43621,0.73215,452.16,0.2911,0.71596,-0.63456,197.08,-0.80099,0.5451,0.24756,642
> view matrix models
> #68,-0.71438,-0.50329,0.48617,586.55,0.5054,0.10944,0.85592,191.27,-0.48399,0.85716,0.17618,605.95
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.71438,-0.50329,0.48617,620.38,0.5054,0.10944,0.85592,166.98,-0.48399,0.85716,0.17618,562.7
> view matrix models
> #68,-0.71438,-0.50329,0.48617,597.33,0.5054,0.10944,0.85592,155.36,-0.48399,0.85716,0.17618,557.04
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.8089,-0.47077,0.35221,603.86,-0.017331,0.61788,0.78608,162.27,-0.58769,0.62976,-0.50797,587.58
> view matrix models
> #68,-0.70202,-0.58116,0.41161,602.03,-0.082548,0.64049,0.76352,165.59,-0.70736,0.50203,-0.49761,602.01
> view matrix models
> #68,-0.67787,-0.61676,0.40013,602.62,-0.089437,0.60939,0.78781,167.31,-0.72972,0.49824,-0.46825,603.15
> view matrix models
> #68,-0.69887,-0.68849,0.19379,611.35,-0.31866,0.54229,0.77742,185.79,-0.64034,0.48157,-0.59838,600.54
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.69887,-0.68849,0.19379,605.47,-0.31866,0.54229,0.77742,191.64,-0.64034,0.48157,-0.59838,582.67
> view matrix models
> #68,-0.69887,-0.68849,0.19379,606.49,-0.31866,0.54229,0.77742,190.49,-0.64034,0.48157,-0.59838,582.21
> fitmap #68 inMap #85
Fit map Unknown.mrc in map Cage_1unit.mrc copy using 6274 points
correlation = 0.9145, correlation about mean = 0.793, overlap = 3.115e+05
steps = 72, shift = 9.26, angle = 16.5 degrees
Position of Unknown.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.26525470 -0.58911797 -0.76326928 88.28659015
-0.60371295 -0.71871834 0.34492701 122.32017842
-0.75177832 0.36930204 -0.54630156 51.34091032
Axis 0.79536530 -0.37495365 -0.47623923
Axis point 0.00000000 81.72318720 52.69104977
Rotation angle (degrees) 179.12201274
Shift along axis -0.09486228
> fitmap #68 inMap #85
Fit map Unknown.mrc in map Cage_1unit.mrc copy using 6274 points
correlation = 0.9145, correlation about mean = 0.793, overlap = 3.115e+05
steps = 44, shift = 0.00841, angle = 0.0379 degrees
Position of Unknown.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.26496198 -0.58926592 -0.76325674 88.31590214
-0.60335775 -0.71876081 0.34545962 122.29886684
-0.75216661 0.36898320 -0.54598244 51.37420414
Axis 0.79527421 -0.37492992 -0.47640999
Axis point 0.00000000 81.72892654 52.70843863
Rotation angle (degrees) 179.15258739
Shift along axis -0.09332912
> fitmap #68 inMap #85
Fit map Unknown.mrc in map Cage_1unit.mrc copy using 6274 points
correlation = 0.9145, correlation about mean = 0.7928, overlap = 3.115e+05
steps = 64, shift = 0.0442, angle = 0.0711 degrees
Position of Unknown.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.26608108 -0.58893563 -0.76312234 88.21360531
-0.60342786 -0.71912392 0.34458035 122.29744177
-0.75171517 0.36880297 -0.54672543 51.37793359
Axis 0.79562520 -0.37468399 -0.47601728
Axis point 0.00000000 81.67440258 52.66260538
Rotation angle (degrees) 179.12778835
Shift along axis -0.09471061
> fitmap #68 inMap #85
Fit map Unknown.mrc in map Cage_1unit.mrc copy using 6274 points
correlation = 0.9145, correlation about mean = 0.793, overlap = 3.115e+05
steps = 44, shift = 0.0367, angle = 0.0566 degrees
Position of Unknown.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.26514113 -0.58919341 -0.76325050 88.29809392
-0.60354917 -0.71873945 0.34516956 122.30748255
-0.75194987 0.36914056 -0.54617458 51.35680956
Axis 0.79533005 -0.37494177 -0.47630745
Axis point 0.00000000 81.72381063 52.69763119
Rotation angle (degrees) 179.13652864
Shift along axis -0.09368811
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.68754,-0.54654,0.47811,600.7,-0.14366,0.74777,0.64823,168.72,-0.7118,0.377,-0.59264,586.6
> view matrix models
> #68,-0.23866,0.97048,0.034839,496.89,-0.93566,-0.22019,-0.27579,287.62,-0.25998,-0.098416,0.96059,557.41
> fitmap #68 inMap #85
Fit map Unknown.mrc in map Cage_1unit.mrc copy using 6274 points
correlation = 1, correlation about mean = 0.9999, overlap = 3.442e+05
steps = 68, shift = 4.96, angle = 18.8 degrees
Position of Unknown.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999415 -0.00198683 0.00278794 0.07318337
0.00198962 0.99999753 -0.00100009 -0.06785810
-0.00278595 0.00100563 0.99999563 0.06300749
Axis 0.28112250 0.78124158 0.55734346
Axis point 22.12150634 0.00000000 -25.93354931
Rotation angle (degrees) 0.20439332
Shift along axis 0.00267674
> fitmap #68 inMap #85
Fit map Unknown.mrc in map Cage_1unit.mrc copy using 6274 points
correlation = 1, correlation about mean = 1, overlap = 3.443e+05
steps = 28, shift = 0.0477, angle = 0.048 degrees
Position of Unknown.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999358 -0.00269227 0.00237001 0.10523795
0.00269423 0.99999604 -0.00082248 -0.15294889
-0.00236779 0.00082887 0.99999687 0.07023048
Axis 0.22432980 0.64361318 0.73173644
Axis point 51.22945627 40.91973636 0.00000000
Rotation angle (degrees) 0.21088499
Shift along axis -0.02344171
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #176, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #178, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #179, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #180, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #181, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #182, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #183, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #184, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #185, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #186, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #187, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #188, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #189, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #190, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #191, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #192, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #193, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Unknown.mrc copy as #194, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> close #68
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/Cage.mrc
Opened Cage.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
9.84e-05, step 1, values float32
> volume #68 level 0.08908
> select add #68
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #68,1,0,0,379.51,0,1,0,-177.73,0,0,1,500.76
> ui mousemode right "rotate selected models"
> view matrix models
> #68,0.12021,0.96141,-0.24747,443.47,-0.9824,0.07931,-0.16909,-76.448,-0.14294,0.26345,0.95403,509.54
> ui mousemode right "translate selected models"
> view matrix models
> #68,0.12021,0.96141,-0.24747,469.83,-0.9824,0.07931,-0.16909,112.59,-0.14294,0.26345,0.95403,661.05
> view matrix models
> #68,0.12021,0.96141,-0.24747,434.48,-0.9824,0.07931,-0.16909,191.36,-0.14294,0.26345,0.95403,502.28
> ui mousemode right "rotate selected models"
> view matrix models
> #68,0.17112,0.98194,-0.080642,447.26,-0.9704,0.15382,-0.1862,187.4,-0.17044,0.11012,0.9792,509.62
> ui mousemode right "translate selected models"
> view matrix models
> #68,0.17112,0.98194,-0.080642,407.82,-0.9704,0.15382,-0.1862,243.8,-0.17044,0.11012,0.9792,548.8
> view matrix models
> #68,0.17112,0.98194,-0.080642,447.29,-0.9704,0.15382,-0.1862,238.13,-0.17044,0.11012,0.9792,555.84
> fitmap #68 inMap #85
Fit map Cage.mrc in map Cage_1unit.mrc copy using 20165 points
correlation = 0.9998, correlation about mean = 0.9994, overlap = 6.143e+05
steps = 132, shift = 16.4, angle = 22.3 degrees
Position of Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999978 0.00058411 -0.00032901 -0.23122011
-0.00058411 0.99999984 -0.00000473 0.06246643
0.00032900 0.00000492 0.99999996 -0.01597797
Axis 0.00720175 -0.49074844 -0.87127154
Axis point 91.36876164 395.65912823 0.00000000
Rotation angle (degrees) 0.03841172
Shift along axis -0.01839934
> fitmap #68 inMap #85
Fit map Cage.mrc in map Cage_1unit.mrc copy using 20165 points
correlation = 0.9998, correlation about mean = 0.9995, overlap = 6.143e+05
steps = 36, shift = 0.0218, angle = 0.0164 degrees
Position of Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999963 0.00062476 -0.00060750 -0.23366168
-0.00062474 0.99999981 0.00004248 0.06888020
0.00060753 -0.00004210 0.99999983 -0.04875943
Axis -0.04847194 -0.69633067 -0.71608245
Axis point 108.21875384 374.20122234 0.00000000
Rotation angle (degrees) 0.04998785
Shift along axis -0.00172159
> fitmap #68 inMap #85
Fit map Cage.mrc in map Cage_1unit.mrc copy using 20165 points
correlation = 0.9998, correlation about mean = 0.9994, overlap = 6.142e+05
steps = 28, shift = 0.0209, angle = 0.01 degrees
Position of Cage.mrc (#68) relative to Cage_1unit.mrc copy (#85) coordinates:
Matrix rotation and translation
0.99999971 0.00061264 -0.00046428 -0.24216632
-0.00061267 0.99999982 -0.00005788 0.06092543
0.00046424 0.00005816 0.99999991 -0.03162287
Axis 0.07526572 -0.60224583 -0.79475470
Axis point 70.04158970 391.65472216 0.00000000
Rotation angle (degrees) 0.04416799
Shift along axis -0.02978648
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #195, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #196, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #197, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #198, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #199, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #200, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #201, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #202, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #203, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #204, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #205, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #206, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #207, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #208, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #209, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #210, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #211, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened Cage.mrc copy as #212, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> volume #68 show
> select subtract #68
Nothing selected
> hide #!68 models
> close #68
> hide #!85 models
> color #195 #4a9ed2ff models
> color #178-195 #4a9ed2ff models
> color #195-212 #4a9ed2ff models
> color #158 #cdd5a6ff models
> color #158 #d0d5baff models
> color #158 #d0d5b8ff models
> color #158 #b4b99fff models
> color #158 #a1a58fff models
> color #158-175 #a1a58fff models
> hide #!176 models
> show #!176 models
> color #176 #a1a58fff models
> color #178-194 #a1a58fff models
> color #158 #fac035ff models
> color #158 #a3912bff models
> color #158 #aa912cff models
> color #178-194 #aa912cff models
> color #158-176 #aa912cff models
> color #158 #b0b17eff models
> color #158 #1e3db1ff models
> color #158 #b16305ff models
> color #158 #b18935ff models
> color #158 #b18730ff models
> hide #!170 models
> show #!170 models
> hide #!170 models
> show #!170 models
> color #158 #ffc246ff models
> color #158 #6a511dff models
> color #158 #6f551fff models
> color #158 #7c5e22ff models
> color #158 #919191ff models
> set bgColor white
> color #158 #797979ff models
> color #158-176 #797979ff models
> color #178-194 #797979ff models
> color #132 #76d6ffff models
> color #132 #73fdffff models
> color #132 #73fcd6ff models
> color #132 #73fdffff models
> color #132 #00fa92ff models
> color #132 #009051ff models
> color #132 #73fcd6ff models
> show #!119 models
> hide #!121 models
> show #!121 models
> color #116-139 #797979ff models
> color #116-157\ #797979ff models
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #116-157 #797979ff models
> show #!101 models
> show #!112 models
> color #101-112 #797979ff models
> show #!102 models
> show #!103 models
> show #!104 models
> show #!105 models
> show #!106 models
> show #!107 models
> show #!108 models
> show #!109 models
> show #!110 models
> show #!111 models
> show #!114 models
> color #114 #797979ff models
> show #!116 models
> show #!117 models
> show #!118 models
> color #69 #fffb00ff models
> color #69-84 #fffb00ff models
> color #86 #fffb00ff models
> color #121 #fffb00ff models
> show #!93 models
> color #93 #ff9300ff models
> show #!512 models
> color #512 #ff9300ff models
> volume #93 level 3.552
> volume #93 level 2.811
> color #93 #YlGn-5 (3-9) models
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #93 YlGn-5 (5)
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #93 YlGn-5
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #93 YlGn-
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #93 YlG
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #93 deep sky blue
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Remodel_ver6_2024.cxs includeMaps true
——— End of log from Thu Jun 13 21:33:25 2024 ———
opened ChimeraX session
> show #!85 models
> close #69-84
> close #121-139
> close #140-176
> close #178-194
> hide #!195 models
> hide #!196 models
> hide #!197 models
> hide #!198 models
> hide #!199 models
> hide #!200 models
> hide #!201 models
> hide #!202 models
> hide #!203 models
> hide #!204 models
> hide #!205 models
> show #!205 models
> hide #!206 models
> hide #!205 models
> hide #!207 models
> hide #!208 models
> hide #!209 models
> show #!209 models
> hide #!210 models
> hide #!209 models
> hide #!211 models
> hide #!212 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/REDO-
> segment_June28_2024/PflA_new.mrc
Opened PflA_new.mrc as #68, grid size 240,240,240, pixel 2.1, shown at level
0.000711, step 1, values float32
> select add #68
2 models selected
> view matrix models #68,1,0,0,613.24,0,1,0,104.06,0,0,1,640.89
> ui mousemode right "rotate selected models"
> hide #!93 models
> view matrix models
> #68,0.82938,-0.10189,0.54931,609.29,-0.056337,0.96296,0.26369,103.01,-0.55583,-0.24964,0.79292,621.84
> view matrix models
> #68,-0.24987,0.48404,0.83861,575.6,-0.95164,-0.28265,-0.1204,71.29,0.17875,-0.82814,0.53125,644.38
> volume #68 level 0.1623
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.24987,0.48404,0.83861,551.51,-0.95164,-0.28265,-0.1204,288.65,0.17875,-0.82814,0.53125,574.12
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.23059,0.50884,0.82941,550.54,-0.95229,-0.29316,-0.084898,290.2,0.19995,-0.80941,0.55216,574.39
> view matrix models
> #68,0.029652,0.98377,-0.17696,502.53,-0.99683,0.042185,0.067488,285.03,0.073858,0.1744,0.9819,558.66
> ui mousemode right "translate selected models"
> view matrix models
> #68,0.029652,0.98377,-0.17696,505.82,-0.99683,0.042185,0.067488,282.71,0.073858,0.1744,0.9819,557.4
> view matrix models
> #68,0.029652,0.98377,-0.17696,496.35,-0.99683,0.042185,0.067488,282.57,0.073858,0.1744,0.9819,557.75
> ui mousemode right "rotate selected models"
> view matrix models
> #68,-0.053512,0.97856,-0.19888,495.31,-0.99567,-0.037121,0.085255,285.6,0.076044,0.20258,0.97631,556.71
> ui mousemode right "rotate selected models"
> view matrix models
> #68,0.042948,0.98675,0.15645,507.89,-0.96913,0.0030957,0.24652,290.11,0.24277,-0.16221,0.95643,568
> undo
> ui mousemode right "translate selected models"
> view matrix models
> #68,-0.053512,0.97856,-0.19888,502.26,-0.99567,-0.037121,0.085255,284.49,0.076044,0.20258,0.97631,536.64
> ui tool show "Fit in Map"
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9982, correlation about mean = 0.9952, overlap = 2.972e+05
steps = 184, shift = 18.6, angle = 13.4 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999121 -0.00311972 -0.00280959 0.39132535
0.00317609 0.99978912 0.02029014 0.81272533
0.00274569 -0.02029889 0.99979022 0.33773132
Axis -0.97926712 -0.13402883 0.15189527
Axis point 0.00000000 20.31844188 -36.93194833
Rotation angle (degrees) 1.18749356
Shift along axis -0.44084088
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9979, correlation about mean = 0.9945, overlap = 2.972e+05
steps = 40, shift = 0.0372, angle = 0.418 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99998302 -0.00305786 -0.00496609 0.29082409
0.00319216 0.99962320 0.02726400 1.04057154
0.00488084 -0.02727940 0.99961596 0.46721110
Axis -0.97789381 -0.17654290 0.11205490
Axis point 0.00000000 19.33032555 -35.20722833
Rotation angle (degrees) 1.59808349
Shift along axis -0.41574730
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9978, correlation about mean = 0.9943, overlap = 2.971e+05
steps = 28, shift = 0.029, angle = 0.0929 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99998135 -0.00292838 -0.00536427 0.26143811
0.00308187 0.99957957 0.02883105 1.11969922
0.00527758 -0.02884705 0.99956994 0.51016460
Axis -0.97827873 -0.18049648 0.10193993
Axis point 0.00000000 19.65624814 -36.00906450
Rotation angle (degrees) 1.68928887
Shift along axis -0.40585496
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9978, correlation about mean = 0.9942, overlap = 2.971e+05
steps = 24, shift = 0.00488, angle = 0.0561 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99998044 -0.00280244 -0.00559546 0.24593915
0.00296785 0.99955226 0.02977465 1.15235967
0.00550951 -0.02979068 0.99954101 0.52963593
Axis -0.97863391 -0.18244997 0.09480341
Axis point 0.00000000 19.60776662 -35.95233431
Rotation angle (degrees) 1.74394596
Shift along axis -0.40072108
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9978, correlation about mean = 0.9942, overlap = 2.971e+05
steps = 24, shift = 0.00332, angle = 0.0334 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99997983 -0.00273138 -0.00573807 0.23634553
0.00290424 0.99953560 0.03033490 1.17312639
0.00565254 -0.03035096 0.99952335 0.54125547
Axis -0.97876858 -0.18371278 0.09089375
Axis point 0.00000000 19.58893171 -35.96436514
Rotation angle (degrees) 1.77651833
Shift along axis -0.39764916
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/REDO-
> segment_June28_2024/Unknown_near_PflA.mrc
Opened Unknown_near_PflA.mrc as #69, grid size 240,240,240, pixel 2.1, shown
at level 0.00169, step 1, values float32
> volume #69 level 0.127
> select add #69
4 models selected
> view matrix models
> #68,-0.14614,0.98912,0.01685,492.27,-0.98854,-0.14667,0.035875,268.17,0.037956,-0.011414,0.99921,557.19,#69,1,0,0,-3.235,0,1,0,-9.2068,0,0,1,22.063
> undo
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9977, correlation about mean = 0.9941, overlap = 2.971e+05
steps = 24, shift = 0.00182, angle = 0.0196 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99997944 -0.00269473 -0.00582308 0.23090738
0.00287207 0.99952565 0.03066401 1.18447794
0.00573769 -0.03068012 0.99951282 0.54786232
Axis -0.97881696 -0.18446555 0.08882469
Axis point 0.00000000 19.57410011 -35.94350173
Rotation angle (degrees) 1.79570604
Shift along axis -0.39584773
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9977, correlation about mean = 0.9941, overlap = 2.971e+05
steps = 28, shift = 0.0334, angle = 0.0338 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99997632 -0.00320784 -0.00609212 0.24604362
0.00339387 0.99952062 0.03077446 1.15354624
0.00599048 -0.03079442 0.99950782 0.53779542
Axis -0.97589574 -0.19151484 0.10464020
Axis point 0.00000000 19.39348425 -34.66287377
Rotation angle (degrees) 1.80768405
Shift along axis -0.40475913
> fitmap #68 inMap #85
Fit map PflA_new.mrc in map Cage_1unit.mrc copy using 12323 points
correlation = 0.9977, correlation about mean = 0.9941, overlap = 2.971e+05
steps = 28, shift = 0.0253, angle = 0.0181 degrees
Position of PflA_new.mrc (#68) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99997810 -0.00293410 -0.00593641 0.23642989
0.00311531 0.99952228 0.03075004 1.17833779
0.00584335 -0.03076787 0.99950951 0.54576277
Axis -0.97760707 -0.18719707 0.09613368
Axis point 0.00000000 19.55286270 -35.58557342
Rotation angle (degrees) 1.80302398
Shift along axis -0.39925073
> select subtract #68
2 models selected
> view matrix models #69,1,0,0,-149.91,0,1,0,47.702,0,0,1,401.66
> view matrix models #69,1,0,0,459.91,0,1,0,180.63,0,0,1,100.53
> view matrix models #69,1,0,0,329.76,0,1,0,196.19,0,0,1,541.1
> view matrix models #69,1,0,0,647.08,0,1,0,317.17,0,0,1,563.97
> ui mousemode right "rotate selected models"
> view matrix models
> #69,0.99402,0.1087,-0.010115,643.86,-0.10881,0.994,-0.01094,311.85,0.0088652,0.011975,0.99989,564.09
> view matrix models
> #69,-0.17336,0.96272,-0.20763,562.12,-0.98414,-0.17741,-0.00093886,299.22,-0.03774,0.20417,0.97821,556.58
> ui mousemode right "translate selected models"
> view matrix models
> #69,-0.17336,0.96272,-0.20763,485.17,-0.98414,-0.17741,-0.00093886,276.01,-0.03774,0.20417,0.97821,550.5
> view matrix models
> #69,-0.17336,0.96272,-0.20763,492.9,-0.98414,-0.17741,-0.00093886,280.12,-0.03774,0.20417,0.97821,527.12
> fitmap #69 inMap #85
Fit map Unknown_near_PflA.mrc in map Cage_1unit.mrc copy using 5987 points
correlation = 0.9974, correlation about mean = 0.9922, overlap = 6.302e+04
steps = 80, shift = 8.7, angle = 13 degrees
Position of Unknown_near_PflA.mrc (#69) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99957626 -0.02633036 0.01240996 1.71044481
0.02601275 0.99934658 0.02509486 2.20079658
-0.01306261 -0.02476141 0.99960805 0.34268444
Axis -0.65049163 0.33234920 0.68293825
Axis point -84.91000270 62.69170164 0.00000000
Rotation angle (degrees) 2.19622610
Shift along axis -0.14716474
> fitmap #69 inMap #85
Fit map Unknown_near_PflA.mrc in map Cage_1unit.mrc copy using 5987 points
correlation = 0.9974, correlation about mean = 0.9921, overlap = 6.301e+04
steps = 48, shift = 0.033, angle = 0.0311 degrees
Position of Unknown_near_PflA.mrc (#69) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99958182 -0.02625589 0.01211649 1.68068799
0.02593984 0.99933711 0.02554329 2.22712411
-0.01277912 -0.02521830 0.99960029 0.39488325
Axis -0.65969078 0.32354007 0.67832876
Axis point -85.76439639 62.35497176 0.00000000
Rotation angle (degrees) 2.20492910
Shift along axis -0.12030982
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/REDO-
> segment_June28_2024/PflB_new.mrc
Opened PflB_new.mrc as #70, grid size 240,240,240, pixel 2.1, shown at level
0.00237, step 1, values float32
> select subtract #69
Nothing selected
> select add #70
2 models selected
> view matrix models #70,1,0,0,-4.9121,0,1,0,-233.69,0,0,1,258.37
> view matrix models #70,1,0,0,131.72,0,1,0,-262.89,0,0,1,99.306
> view matrix models #70,1,0,0,419.52,0,1,0,-203.73,0,0,1,59.213
> ui mousemode right "rotate selected models"
> view matrix models
> #70,0.0047356,0.99945,0.032956,388.21,-0.97842,-0.0021769,0.20661,-236.05,0.20657,-0.033223,0.97787,65.847
> ui mousemode right "translate selected models"
> view matrix models
> #70,0.0047356,0.99945,0.032956,373.72,-0.97842,-0.0021769,0.20661,-192.18,0.20657,-0.033223,0.97787,490.13
> view matrix models
> #70,0.0047356,0.99945,0.032956,320.11,-0.97842,-0.0021769,0.20661,-169.12,0.20657,-0.033223,0.97787,559.57
> view matrix models
> #70,0.0047356,0.99945,0.032956,337.91,-0.97842,-0.0021769,0.20661,20.664,0.20657,-0.033223,0.97787,758.35
> view matrix models
> #70,0.0047356,0.99945,0.032956,396.76,-0.97842,-0.0021769,0.20661,191.52,0.20657,-0.033223,0.97787,811.23
> view matrix models
> #70,0.0047356,0.99945,0.032956,423.34,-0.97842,-0.0021769,0.20661,255.13,0.20657,-0.033223,0.97787,807.47
> ui mousemode right "rotate selected models"
> view matrix models
> #70,-0.075011,0.99696,0.021019,420.7,-0.97666,-0.077705,0.20026,255.09,0.20129,-0.0055066,0.97952,807.33
> ui mousemode right "translate selected models"
> view matrix models
> #70,-0.075011,0.99696,0.021019,451.68,-0.97666,-0.077705,0.20026,330.31,0.20129,-0.0055066,0.97952,781.38
> view matrix models
> #70,-0.075011,0.99696,0.021019,454.01,-0.97666,-0.077705,0.20026,302.76,0.20129,-0.0055066,0.97952,768.49
> view matrix models
> #70,-0.075011,0.99696,0.021019,488.44,-0.97666,-0.077705,0.20026,223.92,0.20129,-0.0055066,0.97952,552.89
> view matrix models
> #70,-0.075011,0.99696,0.021019,499.93,-0.97666,-0.077705,0.20026,273.52,0.20129,-0.0055066,0.97952,529.19
> view matrix models
> #70,-0.075011,0.99696,0.021019,491.44,-0.97666,-0.077705,0.20026,272.57,0.20129,-0.0055066,0.97952,531.39
> fitmap #70 inMap #85
Fit map PflB_new.mrc in map Cage_1unit.mrc copy using 39132 points
correlation = 0.998, correlation about mean = 0.9979, overlap = 4.185e+05
steps = 412, shift = 7.89, angle = 10.3 degrees
Position of PflB_new.mrc (#70) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99997586 -0.00146919 -0.00679026 0.04366009
0.00147615 0.99999839 0.00102002 -0.44242963
0.00678874 -0.00103002 0.99997642 -0.17595924
Axis -0.14596014 -0.96680889 0.20970505
Axis point 37.84621887 0.00000000 14.55975115
Rotation angle (degrees) 0.40236795
Shift along axis 0.38447273
> fitmap #70 inMap #85
Fit map PflB_new.mrc in map Cage_1unit.mrc copy using 39132 points
correlation = 0.9982, correlation about mean = 0.998, overlap = 4.185e+05
steps = 48, shift = 0.298, angle = 0.185 degrees
Position of PflB_new.mrc (#70) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99998980 -0.00239321 -0.00382865 0.19574632
0.00240055 0.99999529 0.00191241 -0.49108554
0.00382405 -0.00192158 0.99999084 0.12420991
Axis -0.39080929 -0.78006232 0.48864187
Axis point 14.66133413 0.00000000 88.57695146
Rotation angle (degrees) 0.28104775
Shift along axis 0.36727201
> fitmap #70 inMap #85
Fit map PflB_new.mrc in map Cage_1unit.mrc copy using 39132 points
correlation = 0.9982, correlation about mean = 0.998, overlap = 4.186e+05
steps = 48, shift = 0.137, angle = 0.0769 degrees
Position of PflB_new.mrc (#70) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99998525 -0.00201931 -0.00504086 0.10737375
0.00202679 0.99999685 0.00147748 -0.48292873
0.00503786 -0.00148767 0.99998620 -0.00703405
Axis -0.26338025 -0.89524583 0.35939636
Axis point 30.15670399 0.00000000 42.19215048
Rotation angle (degrees) 0.32252092
Shift along axis 0.40153179
> fitmap #70 inMap #85
Fit map PflB_new.mrc in map Cage_1unit.mrc copy using 39132 points
correlation = 0.9983, correlation about mean = 0.998, overlap = 4.185e+05
steps = 76, shift = 0.196, angle = 0.116 degrees
Position of PflB_new.mrc (#70) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999179 -0.00251298 -0.00317780 0.22246821
0.00251956 0.99999468 0.00206718 -0.49365447
0.00317258 -0.00207517 0.99999281 0.18724552
Axis -0.45519446 -0.69783220 0.55301738
Axis point 1.69742469 0.00000000 119.67496340
Rotation angle (degrees) 0.26070126
Shift along axis 0.34677171
> volume #70 level 0.04669
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/REDO-
> segment_June28_2024/Top-cage.mrc
Opened Top-cage.mrc as #71, grid size 240,240,240, pixel 2.1, shown at level
0.000178, step 1, values float32
> volume #71 level 0.1433
> select subtract #70
Nothing selected
> select add #71
2 models selected
> view matrix models #71,1,0,0,269.04,0,1,0,-135.84,0,0,1,-29.388
> view matrix models #71,1,0,0,501.39,0,1,0,-66.264,0,0,1,576.45
> ui mousemode right "rotate selected models"
> view matrix models
> #71,-0.29634,0.93181,0.20954,563.98,-0.94852,-0.31282,0.049638,77.756,0.1118,-0.18404,0.97654,576.15
> ui mousemode right "translate selected models"
> view matrix models
> #71,-0.29634,0.93181,0.20954,504.58,-0.94852,-0.31282,0.049638,282.19,0.1118,-0.18404,0.97654,594.16
> view matrix models
> #71,-0.29634,0.93181,0.20954,523.79,-0.94852,-0.31282,0.049638,278.94,0.1118,-0.18404,0.97654,545.29
> view matrix models
> #71,-0.29634,0.93181,0.20954,506.17,-0.94852,-0.31282,0.049638,278.47,0.1118,-0.18404,0.97654,545.86
> fitmap #71 inMap #85
Fit map Top-cage.mrc in map Cage_1unit.mrc copy using 25029 points
correlation = 0.9997, correlation about mean = 0.9991, overlap = 9.579e+05
steps = 112, shift = 8.02, angle = 16 degrees
Position of Top-cage.mrc (#71) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999735 0.00118883 0.00197631 -0.20081803
-0.00118338 0.99999551 -0.00275365 0.15672634
-0.00197957 0.00275130 0.99999426 -0.16750514
Axis 0.76649465 0.55080673 -0.33029969
Axis point 0.00000000 62.47929824 59.26895601
Rotation angle (degrees) 0.20574903
Shift along axis -0.01227313
> select subtract #71
Nothing selected
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/REDO-
> segment_June28_2024/PflB_new.mrc
Opened PflB_new.mrc as #72, grid size 240,240,240, pixel 2.1, shown at level
0.00237, step 1, values float32
> select add #72
2 models selected
> select subtract #72
Nothing selected
> select add #72
2 models selected
> close #72
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/Resegment_June13_2024/REDO-
> segment_June28_2024/MotB_new.mrc
Opened MotB_new.mrc as #72, grid size 240,240,240, pixel 2.1, shown at level
0.000657, step 1, values float32
> select add #72
2 models selected
> view matrix models #72,1,0,0,327.88,0,1,0,68.446,0,0,1,-6.2704
> view matrix models #72,1,0,0,392.65,0,1,0,-91.365,0,0,1,517.18
> ui mousemode right "rotate selected models"
> view matrix models
> #72,-0.15295,0.98764,0.034201,356.17,-0.92787,-0.13161,-0.34892,-123.92,-0.3401,-0.0851,0.93653,505.79
> ui mousemode right "translate selected models"
> view matrix models
> #72,-0.15295,0.98764,0.034201,489.92,-0.92787,-0.13161,-0.34892,280.78,-0.3401,-0.0851,0.93653,553.76
> volume #72 level 0.03362
> fitmap #72 inMap #85
Fit map MotB_new.mrc in map Cage_1unit.mrc copy using 13895 points
correlation = 0.9976, correlation about mean = 0.9973, overlap = 2.727e+05
steps = 1028, shift = 20.6, angle = 23.3 degrees
Position of MotB_new.mrc (#72) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975799 -0.01782359 -0.01289638 0.27826956
0.01782850 0.99984104 0.00026583 -0.81431798
0.01288959 -0.00049569 0.99991683 -0.56778011
Axis -0.01730457 -0.58595878 0.81015607
Axis point 45.40296630 15.00789256 0.00000000
Rotation angle (degrees) 1.26079352
Shift along axis 0.01235093
> fitmap #72 inMap #85
Fit map MotB_new.mrc in map Cage_1unit.mrc copy using 13895 points
correlation = 0.9976, correlation about mean = 0.9973, overlap = 2.727e+05
steps = 44, shift = 0.0383, angle = 0.0466 degrees
Position of MotB_new.mrc (#72) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99975612 -0.01741548 -0.01358058 0.27803317
0.01741850 0.99984830 0.00010424 -0.79240751
0.01357670 -0.00034076 0.99990780 -0.60160701
Axis -0.01007442 -0.61481445 0.78860744
Axis point 45.27464473 15.33642264 0.00000000
Rotation angle (degrees) 1.26552340
Shift along axis 0.00995081
> select subtract #72
Nothing selected
> hide #!85 models
> close #86
> close #1-15
> close #17-25
> close #26-51
> close #54-59
> volume #72 level 0.09954
> hide #!512 models
> view orient
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #1, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #2, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #3, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #4, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #5, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #6, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #7, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #68 center #113
> volume copy #68
Opened PflA_new.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #68 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #20, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #21, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #22, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #23, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #24, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #25, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #26, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #27, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #28, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #29, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #30, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #31, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #32, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #33, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #34, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #35, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #36, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #69 center #113
> volume copy #69
Opened Unknown_near_PflA.mrc copy as #37, grid size 240,240,240, pixel 2.1,
shown at step 1, values float32
> volume #69 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #45, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #46, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #47, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #48, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #49, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #50, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #51, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #54, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #55, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #56, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #70 center #113
> volume copy #70
Opened PflB_new.mrc copy as #57, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #70 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #58, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #59, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #73, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #74, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #75, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #76, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #77, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #78, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #79, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #80, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #81, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #82, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #83, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #84, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #86, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #121, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #122, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #71 center #113
> volume copy #71
Opened Top-cage.mrc copy as #123, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #71 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #124, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #125, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #126, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #127, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #128, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #129, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #130, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #131, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #132, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #133, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #134, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #135, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #136, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #137, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #138, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #139, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #140, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> turn z 20 models #72 center #113
> volume copy #72
Opened MotB_new.mrc copy as #141, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #72 show
> hide #!1 models
> show #!1 models
> hide #!19 models
> hide #!1 models
> show #!19 models
> hide #!2 models
> show #!1 models
> show #!2 models
> hide #!18 models
> hide #!19 models
> hide #!15 models
> hide #!17 models
> hide #!1 models
> show #!18 models
> hide #!68 models
> show #!19 models
> show #!17 models
> show #!15 models
> show #!1 models
> hide #!19 models
> show #!19 models
> volume add #1-15
Opened volume sum as #142, grid size 554,554,269, pixel 2.1, shown at step 1,
values float32
> volume add #17-19
Opened volume sum as #143, grid size 346,375,252, pixel 2.1, shown at step 1,
values float32
> volume add #142-143 name New_PflA
Expected a keyword
> volume add #142-143
Opened volume sum as #144, grid size 642,583,278, pixel 2.1, shown at step 1,
values float32
> close #142-143
> show #!1 models
> show #!1-15 models
> show #!17-19 models
> hide #!144 models
> view orient
> ui tool show "Map Eraser"
> hide #!1-144 models
> show #142 models
> show #!1 models
> volume erase #1 center 536.59,534.53,536.7 radius 200.59
> hide #!1 models
> show #!2 models
> volume erase #2 center 536.59,534.53,536.7 radius 200.59
> show #!3 models
> hide #!2 models
> volume erase #3 center 536.59,534.53,536.7 radius 200.59
> hide #!3 models
> show #!4 models
> volume erase #4 center 536.59,534.53,536.7 radius 200.59
> hide #!4 models
> show #!5 models
> volume erase #5 center 536.59,534.53,536.7 radius 200.59
> hide #!5 models
> show #!5 models
> show #!6 models
> hide #!5 models
> volume erase #6 center 536.59,534.53,536.7 radius 200.59
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!7 models
> volume erase #7 center 536.59,534.53,536.7 radius 200.59
> show #!8 models
> hide #!7 models
> volume erase #8 center 536.59,534.53,536.7 radius 205.88
> show #!7 models
> hide #!8 models
> volume erase #7 center 536.59,534.53,536.7 radius 205.88
> show #!6 models
> hide #!7 models
> volume erase #6 center 536.59,534.53,536.7 radius 205.88
> hide #!6 models
> show #!5 models
> volume erase #5 center 536.59,534.53,536.7 radius 205.88
> hide #!5 models
> show #!4 models
> volume erase #4 center 536.59,534.53,536.7 radius 205.88
> hide #!4 models
> show #!3 models
> volume erase #3 center 536.59,534.53,536.7 radius 205.88
> hide #!3 models
> show #!2 models
> volume erase #2 center 536.59,534.53,536.7 radius 205.88
[Repeated 1 time(s)]
> hide #!2 models
> show #!1 models
> volume erase #1 center 536.59,534.53,536.7 radius 205.88
> show #!9 models
> hide #!1 models
> volume erase #9 center 536.59,534.53,536.7 radius 205.88
> hide #!9 models
> show #!10 models
> volume erase #10 center 536.59,534.53,536.7 radius 205.88
> hide #!10 models
> show #!11 models
> volume erase #11 center 536.59,534.53,536.7 radius 205.88
> hide #!11 models
> show #!12 models
> volume erase #12 center 536.59,534.53,536.7 radius 205.88
> hide #!12 models
> show #!13 models
> volume erase #13 center 536.59,534.53,536.7 radius 205.88
> hide #!13 models
> show #!14 models
> volume erase #14 center 536.59,534.53,536.7 radius 205.88
> hide #!14 models
> show #!15 models
> volume erase #15 center 536.59,534.53,536.7 radius 205.88
> hide #!15 models
> show #!17 models
> volume erase #17 center 536.59,534.53,536.7 radius 205.88
> show #!18 models
> hide #!17 models
> volume erase #18 center 536.59,534.53,536.7 radius 205.88
> hide #!18 models
> show #!19 models
> volume erase #19 center 536.59,534.53,536.7 radius 205.88
> hide #!19 models
> show #!1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> show #!7 models
> show #!8 models
> show #!9 models
> show #!10 models
> show #!11 models
> show #!12 models
> show #!13 models
> show #!14 models
> show #!15 models
> show #!17 models
> show #!18 models
> show #!19 models
> show #!20 models
> show #!21 models
> show #!22 models
> show #!23 models
> show #!24 models
> show #!25 models
> show #!26 models
> show #!27 models
> show #!28 models
> show #!30 models
> show #!29 models
> show #!31 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!36 models
> show #!37 models
> show #!93 models
> volume copy #93
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at step 1, values float32
> volume copy #93
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at step 1, values float32
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver2_FlgY_2024.cxs includeMaps true
> show #!16 models
> hide #!16 models
> hide #!1 models
> hide #!1-37 models
> show #!93 models
> hide #!93 models
> hide #!143 models
> hide #!145 models
> show #!143 models
> show #!145 models
> hide #!143 models
> show #!143 models
> ui tool show "Map Eraser"
> view orient
> turn x 90
[Repeated 3 time(s)]
> hide #!143 models
> hide #!145 models
> show #!143 models
> volume erase #143 center 536.59,534.53,536.7 radius 170.59
> hide #!143 models
> show #!145 models
> volume erase #145 center 536.59,534.53,536.7 radius 170.59 outside true
> hide #142 models
> show #!143 models
> close #145
> close #143
> show #!93 models
> volume copy #93
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at step 1, values float32
> volume copy #93
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at step 1, values float32
> show #142 models
> hide #!145 models
> volume erase #143 center 536.59,534.53,536.7 radius 170.59
> hide #!143 models
> show #!145 models
> volume erase #145 center 536.59,534.53,536.7 radius 173.43 outside true
> show #!143 models
> hide #142 models
> show #!1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> show #!7 models
> show #!8 models
> show #!9 models
> show #!10 models
> show #!11 models
> show #!12 models
> show #!14 models
> show #!15 models
> show #!13 models
> show #!17 models
> show #!18 models
> show #!19 models
> show #!20 models
> show #!21 models
> show #!22 models
> show #!23 models
> show #!24 models
> show #!25 models
> show #!26 models
> show #!27 models
> show #!28 models
> show #!30 models
> hide #!30 models
> show #!29 models
> show #!30 models
> show #!31 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!36 models
> show #!37 models
> show #!38 models
> show #!39 models
> show #!40 models
> show #!41 models
> show #!42 models
> show #!43 models
> show #!44 models
> show #!46 models
> show #!45 models
> show #!47 models
> show #!48 models
> show #!49 models
> show #!50 models
> show #!51 models
> show #!54 models
> show #!55 models
> show #!56 models
> show #!57 models
> color #145 #3f28ffff models
> color #145 #magenta models
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color #145 magenta models
> color #37 #b2b2ff82 models
> color #37 #b2b2ffff models
> hide #!143 models
> hide #!145 models
> show #!145 models
> show #!143 models
> color #143 #b2b2ffff models
> color #1 #9437ffff models
> color #1 #9a4bffff models
> color #1 #9850ffff models
[Repeated 1 time(s)]
> color #1-15 #9850ffff models
> color #17-18 #9850ffff models
> color #17-19 #9850ffff models
> color #20 #bfddffff models
> color #20 #d2fffcff models
> color #20 #bcfffcff models
> color #20 #cdffe6ff models
> color #20 #c0f9ffff models
> color #20 #ffd8eeff models
> color #20 #ece8ffff models
> color #20 #ffe9e2ff models
> color #20 #79ffa5ff models
> color #20 #c0e9ffff models
> color #20 #cbeeffff models
> color #20 darkgrey models
> color #20 #929292ff models
> color #20-37 #929292ff models
> color #38 #005493ff models
> color #38 #0096ffff models
> color #38 #0433ffff models
> color #38 #005493ff models
> color #38 #00fdffff models
> color #38 #0096ffff models
> color #38 #7a81ffff models
> color #38 #009193ff models
> color #38 #0433ffff models
> color #38 #005493ff models
> color #38 #0063aeff models
> color #38 #0067b7ff models
> color #38 #0067b6ff models
[Repeated 1 time(s)]
> color #38-51 #0067b6ff models
> color #54-57 #0067b6ff models
> hide #!143 models
> show #!143 models
> hide #!143 models
> show #!143 models
> hide #!1-141 models
> close #143
> close #145
> volume copy #93
Opened FlgY-with-joints.mrc copy as #143, grid size 220,220,220, pixel 4.3,
shown at step 1, values float32
> volume copy #93
Opened FlgY-with-joints.mrc copy as #145, grid size 220,220,220, pixel 4.3,
shown at step 1, values float32
> hide #!145 models
> volume erase #143 center 536.59,534.53,536.7 radius 204.15
> show #!145 models
> hide #!143 models
> volume erase #145 center 536.59,534.53,536.7 radius 209.82 outside true
> hide #142 models
> show #!143 models
> hide #!145 models
> show #!145 models
> color #145 magenta models
> color #143 #b2b2ffff models
> show #!1-15 models
> show #!17-19 models
> hide #!143 models
> show #!143 models
> hide #!143 models
> show #!143 models
> color #143 #b2b2ff8c models
> color #143 #b2b2ffae models
> color #143 #b2b2ff87 models
> color #143 #b2b2ff85 models
> show #!20-37 models
> color #143 #b2b2ffce models
> color #143 #b2b2ffff models
> color #143 #9850ffff models
> show #!38 models
> show #!38-51 models
> show #!54-57 models
> show #!58 models
> show #!59 models
> show #!71 models
> hide #!71 models
> show #!72 models
> hide #!72 models
> show #!73 models
> show #!71 models
> show #!73-84 models
> show #!86 models
> show #!121 models
> show #!122 models
> show #!123 models
> show #!470 models
> color #470 #b7916ac7 models
> color #470 #b7916aff models
> hide #!470 models
> color #71 #b7916aff models
> hide #!71 models
> color #73 #b7916aff models
> color #73-84 #b7916aff models
> color #86 #b7916aff models
> color #121-123 #b7916aff models
> color #58-59 #b7916aff models
> show #!124 models
> show #!125 models
> show #!126 models
> show #!127 models
> show #!128 models
> show #!129 models
> show #!130 models
> show #!131 models
> show #!132 models
> show #!133 models
> show #!134 models
> show #!135 models
> show #!136 models
> show #!137 models
> show #!138 models
> show #!139 models
> show #!140 models
> show #!141 models
> show #!101 models
> show #!101-112 models
> show #!117-120 models
> show #!116 models
> hide #!101 models
> show #!101 models
> hide #!120 models
> show #!120 models
> hide #!116 models
> show #!116 models
> hide #!112 models
> show #!112 models
> show #!114 models
> color #101 #8c8a58ff models
> color #101 #878c50ff models
> color #101 #8b8c4aff models
> hide #!101 models
> show #!101 models
> color #101 #9a9d2fff models
> color #101 #9d9750ff models
> color #101 #b6af5cff models
> color #101 #d6cf6dff models
> color #101 #fff682ff models
> color #101 #fffa77ff models
> color #101 #fff832ff models
> color #101 #e0d92bff models
> color #101 #aba621ff models
> color #101-112 #aba621ff models
> color #114 #aba621ff models
> color #116-120 #aba621ff models
> show #!195 models
> show #!196 models
> show #!197 models
> show #!195-211 models
> show #!195-212 models
> show #!281 models
> show #!282 models
> show #!283 models
> show #!284 models
> show #!285 models
> show #!286 models
> show #!287 models
> show #!288 models
> show #!289 models
> show #!290 models
> show #!291 models
> show #!292 models
> show #!293 models
> show #!294 models
> show #!295 models
> show #!296 models
> show #!297 models
> show #!298 models
> color #281 #a3a181ff models
> color #281 #a38a78ff models
> color #281 #a3846bff models
> color #281 #a3a166ff models
> color #281 #9ca320ff models
> color #281 #a39b18ff models
> color #281 #9ba330ff models
> color #101 #aba621ad models
> color #101 #aba621ff models
> color #281-298 #aba621ff models
> color #281 #c8cd4bff models
> color #281 #cbd14cff models
> color #281 #c8d12fff models
> color #281 #d1ca1eff models
> color #281 #d1cd0aff models
> color #281 #dcd80aff models
> color #281 #d7d30aff models
> color #281-298 #d7d30aff models
> hide #!101 models
> show #!101 models
> color #101 #b97f2fff models
> color #101 #b98d25ff models
> color #101 #b98a0fff models
> color #101 #b99211ff models
> color #101 #b99a12ff models
> color #101 #b98d11ff models
> color #101 #b99311ff models
> color #101 #b99c6aff models
> color #101 #b99849ff models
> color #101 #b99d3aff models
> color #101 #b98543ff models
> color #101 #ffb75cff models
> color #101 #ffda77ff models
> color #101 #ffd975ff models
> color #101 #ffd290ff models
> color #101 #ffea82ff models
> color #101 #ffd856ff models
> color #101-112 #ffd856ff models
> color #114 #ffd856ff models
> color #116-120 #ffd856ff models
> color #124 #eb8c4eff models
> color #124 #eb7b13ff models
> color #124 #eb7611ff models
> color #124-141 #eb7611ff models
> show #!356 models
> hide #!356 models
> show #!377 models
> show #!378 models
> show #!379 models
> show #!380 models
> show #!381 models
> show #!382 models
> show #!383 models
> show #!384 models
> show #!385 models
> volume copy #377
Opened PilM-region.mrc gaussian copy as #146, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> hide #!378 models
> hide #!379 models
> hide #!380 models
> hide #!381 models
> hide #!382 models
> hide #!383 models
> hide #!384 models
> hide #!385 models
Drag select of 146 PilM-region.mrc gaussian copy
> select subtract #146
Nothing selected
> volume #146 level 0.0055
> ui tool show "Fit in Map"
> fitmap #146 inMap #210
Fit map PilM-region.mrc gaussian copy in map Cage.mrc copy using 2855 points
correlation = 0.4193, correlation about mean = 0.648, overlap = 23.81
steps = 732, shift = 11.9, angle = 7.34 degrees
Position of PilM-region.mrc gaussian copy (#146) relative to Cage.mrc copy
(#210) coordinates:
Matrix rotation and translation
0.99278069 0.11994318 -0.00036637 -313.57356886
-0.11992688 0.99268768 0.01373759 -290.01512254
0.00201142 -0.01359447 0.99990557 -417.05920084
Axis -0.11320721 -0.00984858 -0.99352259
Axis point -2505.24686163 2036.27299704 0.00000000
Rotation angle (degrees) 6.93348237
Shift along axis 452.71276376
> fitmap #146 inMap #210
Fit map PilM-region.mrc gaussian copy in map Cage.mrc copy using 2855 points
correlation = 0.4193, correlation about mean = 0.6481, overlap = 23.81
steps = 48, shift = 0.0632, angle = 0.0545 degrees
Position of PilM-region.mrc gaussian copy (#146) relative to Cage.mrc copy
(#210) coordinates:
Matrix rotation and translation
0.99273244 0.12033625 -0.00122436 -313.44597067
-0.12030797 0.99264005 0.01384643 -289.89706393
0.00288158 -0.01359850 0.99990339 -417.36961739
Axis -0.11329691 -0.01694996 -0.99341658
Axis point -2469.52832252 2027.17776231 0.00000000
Rotation angle (degrees) 6.95671598
Shift along axis 455.04810304
> volume #146 level 0.004367
> surface dust #146 size 90
> surface dust #146 size 80
> surface dust #146 size 60
> view orient
> turn x 90
[Repeated 1 time(s)]
> show #!113 models
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #147, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #148, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #149, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #150, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #151, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #152, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #153, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #154, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #155, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #156, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #157, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #158, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #159, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #160, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #161, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #162, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #163, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> turn z 20 models #146 center #113
> volume copy #146
Opened PilM-region.mrc gaussian copy as #164, grid size 160,160,200, pixel
4.3,4.3,4.3, shown at step 1, values float32
> volume #146 show
> surface dust #146-164 size 60
> turn x 90
> color #146 #d3e6eb7f models
> color #146 #d3e6ebff models
> hide #!146 models
> show #!146 models
> hide #!147 models
> show #!147 models
> color #147 #92e0efff models
> color #147 #5bcbefff models
> color #147 #85d7efff models
> color #147 #d3e6ebff models
> close #97
> close #96
> close #94#95
> close #87,89#88,90-92
> color #113 #929292ff models
> show #!479 models
> show #!484 models
> show #!177 models
> hide #!177 models
> show #!177 models
> show #!177.1 models
> show #!177.2 models
> show #!177.3 models
> show #!177.4 models
> show #!177.5 models
> show #!177.6 models
> show #!177.7 models
> show #!177.8 models
> show #!177.9 models
> show #!177.10 models
> show #!177.11 models
> show #!177.12 models
> show #!177.13 models
> show #!177.14 models
> show #!177.15 models
> show #!177.16 models
> show #!177.17 models
> show #!177.18 models
> show #!177.19 models
> show #!177.20 models
> show #!177.21 models
> show #!177.22 models
> show #!177.23 models
> show #!177.24 models
> show #!177.25 models
> show #!177.26 models
> show #!177.27 models
> show #!177.28 models
> show #!177.29 models
> show #!177.30 models
> show #!177.31 models
> show #!177.32 models
> show #!177.33 models
> show #!177.34 models
> show #!177.36 models
> show #!177.37 models
> show #!177.38 models
> show #!177.39 models
> show #!177.40 models
> show #!313 models
> volume #312 region 0,0,0,120,120,120
> show #!316 models
> show #!312 models
> volume #313 region 0,0,0,120,120,120
> volume #312 region 0,0,0,240,240,240
> hide #!312 models
> show #!312 models
> hide #!312 models
> hide #!316 models
> view orient
> ui tool show "Side View"
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver2_FlgY_2024.cxs includeMaps true
——— End of log from Sun Jun 30 10:10:34 2024 ———
opened ChimeraX session
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/PflA-B-models.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/Model_From_Jian/July_2024/PflA-B-models.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 ASP B 139 GLU B 155 1 17
Start residue of secondary structure not found: HELIX 2 2 LYS B 159 SER B 171
1 13
Start residue of secondary structure not found: HELIX 3 3 GLN B 174 LYS B 187
1 14
Start residue of secondary structure not found: HELIX 4 4 PHE B 191 ALA B 203
1 13
Start residue of secondary structure not found: HELIX 5 5 ALA B 208 HIS B 221
1 14
465 messages similar to the above omitted
Chain information for PflA-B-models.pdb
---
Chain | Description
87.1/A 87.6/A 87.7/A 87.12/A | No description available
87.2/A 87.8/A | No description available
87.5/A 87.11/A | No description available
87.3/B 87.9/B 87.4/C 87.10/C | No description available
> hide #!1 models
> hide #!1-86 models
> hide #!101-313 models
> hide #!479 models
> hide #!484 models
> show #!20 models
> hide #!20 models
> show #!20 models
> show #!1 models
> show #!38 models
> show #!71 models
> hide #!71 models
> show #!58 models
> ui tool show "Side View"
> select add #87
48888 atoms, 49914 bonds, 6004 residues, 13 models selected
> ui mousemode right "translate selected models"
> view matrix models #87,1,0,0,358.89,0,1,0,274.72,0,0,1,0
> view matrix models #87,1,0,0,386.8,0,1,0,242.98,0,0,1,653.96
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.21873,0.9561,-0.195,584.75,-0.97535,0.20826,-0.072923,448.8,-0.029111,0.20614,0.97809,664.88
> view matrix models
> #87,0.38242,0.90872,-0.16728,550.51,-0.92394,0.37414,-0.079742,441.03,-0.0098763,0.18505,0.98268,660.6
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.38242,0.90872,-0.16728,507.58,-0.92394,0.37414,-0.079742,373.5,-0.0098763,0.18505,0.98268,562.55
> view matrix models
> #87,0.38242,0.90872,-0.16728,507.36,-0.92394,0.37414,-0.079742,434.34,-0.0098763,0.18505,0.98268,574.27
> view matrix models
> #87,0.38242,0.90872,-0.16728,530.47,-0.92394,0.37414,-0.079742,432.91,-0.0098763,0.18505,0.98268,480.47
> view matrix models
> #87,0.38242,0.90872,-0.16728,520.2,-0.92394,0.37414,-0.079742,450.8,-0.0098763,0.18505,0.98268,482.35
> hide #!58 models
> view matrix models
> #87,0.38242,0.90872,-0.16728,517.85,-0.92394,0.37414,-0.079742,456.47,-0.0098763,0.18505,0.98268,481.77
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.079855,-0.89581,0.43721,532.64,-0.090673,-0.44332,-0.89177,275.7,0.99267,0.031569,-0.11663,284.36
> view matrix models
> #87,0.29942,-0.92384,0.23846,493.04,-0.87898,-0.3643,-0.30769,423.95,0.37113,-0.11747,-0.92112,455.25
> view matrix models
> #87,0.17128,-0.96445,0.20122,521.75,-0.91579,-0.23117,-0.32847,437.18,0.36331,-0.12802,-0.92283,456.73
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.17128,-0.96445,0.20122,502.01,-0.91579,-0.23117,-0.32847,458.19,0.36331,-0.12802,-0.92283,454.03
> view matrix models
> #87,0.17128,-0.96445,0.20122,505.87,-0.91579,-0.23117,-0.32847,455.8,0.36331,-0.12802,-0.92283,446.99
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.45095,0.66944,-0.59034,480.72,-0.65288,0.69839,0.29325,400.99,0.6086,0.25318,0.752,370.87
> view matrix models
> #87,0.68135,0.69665,-0.22462,416.91,-0.72636,0.68141,-0.089924,430.95,0.090411,0.22442,0.97029,477.34
> view matrix models
> #87,0.32811,0.92296,-0.20121,491.51,-0.94436,0.32563,-0.04628,473.83,0.022806,0.2052,0.97845,491.22
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.32811,0.92296,-0.20121,516.16,-0.94436,0.32563,-0.04628,472.14,0.022806,0.2052,0.97845,493.8
> view matrix models
> #87,0.32811,0.92296,-0.20121,524.12,-0.94436,0.32563,-0.04628,466.79,0.022806,0.2052,0.97845,467.29
> view matrix models
> #87,0.32811,0.92296,-0.20121,525.05,-0.94436,0.32563,-0.04628,473.52,0.022806,0.2052,0.97845,467.83
> view matrix models
> #87,0.32811,0.92296,-0.20121,526.66,-0.94436,0.32563,-0.04628,470.94,0.022806,0.2052,0.97845,468.09
> select subtract #87
Nothing selected
> select add #87.1
4987 atoms, 5078 bonds, 611 residues, 1 model selected
> select add #87.2
6435 atoms, 6557 bonds, 792 residues, 2 models selected
> select add #87.3
12222 atoms, 12479 bonds, 1501 residues, 3 models selected
> select add #87.4
18009 atoms, 18401 bonds, 2210 residues, 4 models selected
> select subtract #87.4
12222 atoms, 12479 bonds, 1501 residues, 3 models selected
> select add #87.4
18009 atoms, 18401 bonds, 2210 residues, 4 models selected
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/One-units.pdb selectedOnly true
> select add #87
48888 atoms, 49914 bonds, 6004 residues, 13 models selected
> select subtract #87
Nothing selected
> hide #!87 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/One-units.pdb
Chain information for One-units.pdb
---
Chain | Description
88.1/A | No description available
88.2/A | No description available
88.3/B 88.4/C | No description available
> select add #88
18009 atoms, 18401 bonds, 2210 residues, 5 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.98852,-0.1488,-0.026393,60.648,0.14984,0.98777,0.043161,-121.12,0.019648,-0.04662,0.99872,-0.43983
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.98852,-0.1488,-0.026393,61.169,0.14984,0.98777,0.043161,-106.98,0.019648,-0.04662,0.99872,1.8958
> show #!71 models
> hide #!71 models
> show #!58 models
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.94652,-0.23875,0.21703,-14.198,0.1951,0.95925,0.20439,-214.18,-0.25698,-0.15112,0.95453,238.37
> hide #!58 models
> view matrix models
> #88,0.93946,-0.20922,0.27138,-35.903,0.15003,0.96316,0.22317,-200.58,-0.30808,-0.16894,0.93624,272.14
> view matrix models
> #88,0.97563,-0.21743,0.029506,67.553,0.20723,0.95726,0.20175,-226.49,-0.072111,-0.19072,0.97899,96.417
> view matrix models
> #88,0.98349,-0.17775,0.033929,49.875,0.16715,0.96418,0.20593,-203.39,-0.069318,-0.19686,0.97798,96.621
> view matrix models
> #88,0.99844,-0.016548,0.053295,-12.107,0.0043818,0.97532,0.22075,-103.46,-0.055633,-0.22017,0.97387,95.502
> show #!87 models
> hide #87.1 models
> select add #87
66897 atoms, 68315 bonds, 8214 residues, 18 models selected
> view matrix models
> #87,0.31584,0.9247,-0.21255,529.47,-0.94772,0.3182,-0.023971,470.89,0.045467,0.20901,0.97686,463.68,#88,0.99897,-0.0017588,0.045357,-12.397,-0.0091752,0.9708,0.23972,-104.18,-0.044454,-0.23989,0.96978,96.657
> view matrix models
> #87,0.33017,0.93231,-0.14762,524.25,-0.93688,0.30461,-0.17168,474.31,-0.11509,0.19499,0.97403,495.35,#88,0.99393,-0.029855,0.10589,-33.189,0.019679,0.9952,0.095879,-52.642,-0.10824,-0.093214,0.98974,82.291
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.33017,0.93231,-0.14762,519.6,-0.93688,0.30461,-0.17168,470.12,-0.11509,0.19499,0.97403,503.55,#88,0.99393,-0.029855,0.10589,-37.841,0.019679,0.9952,0.095879,-56.83,-0.10824,-0.093214,0.98974,90.499
> select subtract #88
48888 atoms, 49914 bonds, 6004 residues, 13 models selected
> hide #!88 models
> show #87.1 models
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.32123,0.93975,-0.11698,520.49,-0.93946,0.30067,-0.16436,470.35,-0.11929,0.1627,0.97944,503.83
> view matrix models
> #87,0.43536,0.89666,-0.080381,496.16,-0.89412,0.42027,-0.15465,462.15,-0.10488,0.1392,0.98469,500.57
> view matrix models
> #87,0.41871,-0.90221,0.10344,473.52,-0.89763,-0.39392,0.1977,435.31,-0.13762,-0.17563,-0.97479,594.53
> view matrix models
> #87,0.11845,-0.98874,0.091495,538.8,-0.98438,-0.10484,0.14142,465.69,-0.13023,-0.10682,-0.98571,595.37
> view matrix models
> #87,0.23047,-0.96814,0.097916,514.12,-0.96361,-0.21306,0.16146,456.62,-0.13545,-0.13156,-0.98201,595.57
> view matrix models
> #87,0.18955,-0.97718,0.095826,523.02,-0.9727,-0.17357,0.15401,460.29,-0.13386,-0.1224,-0.98341,595.58
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.18955,-0.97718,0.095826,503.31,-0.9727,-0.17357,0.15401,453.96,-0.13386,-0.1224,-0.98341,595.93
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.55288,0.78157,0.28892,463.1,-0.34114,0.52865,-0.77727,365.55,-0.76023,0.33117,0.5589,692.64
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.55288,0.78157,0.28892,471.44,-0.34114,0.52865,-0.77727,329.99,-0.76023,0.33117,0.5589,676.49
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.54422,0.8354,-0.076984,487.5,-0.83837,0.53818,-0.086565,411.37,-0.030885,0.11165,0.99327,506.27
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.54422,0.8354,-0.076984,477.18,-0.83837,0.53818,-0.086565,436.62,-0.030885,0.11165,0.99327,508.78
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.26586,0.96157,-0.068644,534.07,-0.96281,0.2613,-0.068722,459.3,-0.048144,0.084362,0.99527,512.01
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.26586,0.96157,-0.068644,540.48,-0.96281,0.2613,-0.068722,479.29,-0.048144,0.084362,0.99527,514.21
> view matrix models
> #87,0.26586,0.96157,-0.068644,535.18,-0.96281,0.2613,-0.068722,470.05,-0.048144,0.084362,0.99527,483.02
> view matrix models
> #87,0.26586,0.96157,-0.068644,536.54,-0.96281,0.2613,-0.068722,472.71,-0.048144,0.084362,0.99527,483.13
> hide #!87 models
> select subtract #87
Nothing selected
> show #!88 models
> select add #88
18009 atoms, 18401 bonds, 2210 residues, 5 models selected
> view matrix models
> #88,0.99393,-0.029855,0.10589,-37.511,0.019679,0.9952,0.095879,-58.446,-0.10824,-0.093214,0.98974,88.564
> show #!71 models
> hide #!71 models
> show #!73 models
> hide #!73 models
> show #!58 models
> show #!195 models
> hide #!195 models
> hide #!58 models
> view matrix models
> #88,0.99393,-0.029855,0.10589,-37.25,0.019679,0.9952,0.095879,-59.064,-0.10824,-0.093214,0.98974,87.457
> hide #88.4 models
> show #88.4 models
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.99338,-0.055431,0.1006,-27.319,0.045167,0.9938,0.10158,-78.979,-0.10561,-0.096367,0.98973,86.517
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.99338,-0.055431,0.1006,-28.254,0.045167,0.9938,0.10158,-76.594,-0.10561,-0.096367,0.98973,86.517
> view matrix models
> #88,0.99338,-0.055431,0.1006,-28.464,0.045167,0.9938,0.10158,-76.104,-0.10561,-0.096367,0.98973,86.378
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.989,-0.018609,0.14674,-59.345,0.023682,0.99918,-0.032905,7.4659,-0.146,0.036018,0.98863,79.482
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/Segment_june11_2024/1x_Cage-units.mrc
Opened 1x_Cage-units.mrc as #89, grid size 240,240,240, pixel 2.1, shown at
level 0.000178, step 1, values float32
Drag select of 89 1x_Cage-units.mrc
> ui mousemode right "translate selected models"
> view matrix models #89,1,0,0,435.01,0,1,0,64.936,0,0,1,95.886
> volume #89 level 0.1433
> view matrix models #89,1,0,0,560.87,0,1,0,144.98,0,0,1,325.64
> view matrix models #89,1,0,0,341.49,0,1,0,193.86,0,0,1,322.9
> view matrix models #89,1,0,0,640.58,0,1,0,138.91,0,0,1,313.77
> view matrix models #89,1,0,0,689.93,0,1,0,280.64,0,0,1,330.19
> view matrix models #89,1,0,0,755.07,0,1,0,264.45,0,0,1,377.97
> ui mousemode right "rotate selected models"
> view matrix models
> #89,0.48703,0.78831,-0.37599,719.57,-0.82375,0.55767,0.1022,304.87,0.29024,0.25995,0.92097,357.79
> ui mousemode right "translate selected models"
> view matrix models
> #89,0.48703,0.78831,-0.37599,768.43,-0.82375,0.55767,0.1022,393.87,0.29024,0.25995,0.92097,325.79
> select subtract #89
Nothing selected
> select add #88
18009 atoms, 18401 bonds, 2210 residues, 5 models selected
> view matrix models
> #88,0.989,-0.018609,0.14674,119.32,0.023682,0.99918,-0.032905,188.5,-0.146,0.036018,0.98863,22.149
> view matrix models
> #88,0.989,-0.018609,0.14674,86.094,0.023682,0.99918,-0.032905,185.92,-0.146,0.036018,0.98863,-74.697
> color #89 #b2b2b284 models
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.97812,-0.026243,-0.20636,279.88,0.054131,0.98995,0.13068,82.213,0.20086,-0.13899,0.96971,-253.91
> view matrix models
> #88,0.9982,0.059821,-0.0045882,139,-0.056529,0.96337,0.26214,95.993,0.020101,-0.2614,0.96502,-96.83
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.9982,0.059821,-0.0045882,164.5,-0.056529,0.96337,0.26214,91.882,0.020101,-0.2614,0.96502,-127.62
> view matrix models
> #88,0.9982,0.059821,-0.0045882,186.68,-0.056529,0.96337,0.26214,73.617,0.020101,-0.2614,0.96502,-104.09
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.95731,-0.26641,0.11216,239.55,0.20535,0.89989,0.38474,-150.45,-0.20343,-0.34529,0.91618,94.512
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.95731,-0.26641,0.11216,231.11,0.20535,0.89989,0.38474,-160.09,-0.20343,-0.34529,0.91618,78.765
> view matrix models
> #88,0.95731,-0.26641,0.11216,235.03,0.20535,0.89989,0.38474,-157.71,-0.20343,-0.34529,0.91618,77.541
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.96151,-0.26038,-0.08774,333.03,0.2723,0.8603,0.43097,-216.49,-0.036734,-0.43827,0.89809,-1.5665
> view matrix models
> #88,0.94769,-0.30708,-0.087066,353.77,0.3134,0.84352,0.43618,-242.81,-0.060499,-0.44065,0.89564,16.403
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.94769,-0.30708,-0.087066,350.67,0.3134,0.84352,0.43618,-239.31,-0.060499,-0.44065,0.89564,13.934
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.96127,-0.25804,-0.09683,334.03,0.27378,0.85355,0.44329,-218.97,-0.031736,-0.45263,0.89114,0.030882
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.96127,-0.25804,-0.09683,339.84,0.27378,0.85355,0.44329,-227.68,-0.031736,-0.45263,0.89114,6.1044
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.95285,-0.28959,-0.090616,350.39,0.29925,0.84735,0.43868,-240.85,-0.050255,-0.44511,0.89406,15.123
> select #89
2 models selected
> select clear
> select add #88
18009 atoms, 18401 bonds, 2210 residues, 5 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.95285,-0.28959,-0.090616,346.66,0.29925,0.84735,0.43868,-233.68,-0.050255,-0.44511,0.89406,13.262
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.96997,-0.22994,-0.079262,314.24,0.24077,0.86172,0.44661,-202.17,-0.034391,-0.45229,0.89121,5.9041
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.96997,-0.22994,-0.079262,314.23,0.24077,0.86172,0.44661,-203.86,-0.034391,-0.45229,0.89121,6.3868
> select subtract #88
Nothing selected
> show #!71 models
> hide #!71 models
> show #!58 models
> select add #88
18009 atoms, 18401 bonds, 2210 residues, 5 models selected
> view matrix models
> #88,0.96997,-0.22994,-0.079262,126.53,0.24077,0.86172,0.44661,-393.27,-0.034391,-0.45229,0.89121,62.479
> view matrix models
> #88,0.96997,-0.22994,-0.079262,92.727,0.24077,0.86172,0.44661,-342.49,-0.034391,-0.45229,0.89121,153.36
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.94953,-0.24062,-0.20121,170.85,0.29514,0.9026,0.31338,-321.79,0.1062,-0.35695,0.92807,16.322
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.94953,-0.24062,-0.20121,199.91,0.29514,0.9026,0.31338,-320.19,0.1062,-0.35695,0.92807,21.656
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.98293,-0.16091,-0.089176,99.412,0.15719,0.98643,-0.047315,-62.095,0.09558,0.032489,0.99489,-104.17
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.98293,-0.16091,-0.089176,95.518,0.15719,0.98643,-0.047315,-63.462,0.09558,0.032489,0.99489,-78.208
> hide #!58 models
> view matrix models
> #88,0.98293,-0.16091,-0.089176,102.58,0.15719,0.98643,-0.047315,-68.702,0.09558,0.032489,0.99489,-76.827
> view matrix models
> #88,0.98293,-0.16091,-0.089176,100.5,0.15719,0.98643,-0.047315,-69.497,0.09558,0.032489,0.99489,-75.384
> color #38 #0067b67f models
> color #38 #0067b680 models
> color #1 #9850ff90 models
> ui mousemode right "rotate selected models"
> color #1 #9850ff91 models
> view matrix models
> #88,0.99511,-0.07277,-0.066769,57.644,0.071069,0.99709,-0.027513,-24.284,0.068577,0.022633,0.99739,-55.84
> view matrix models
> #88,0.99707,-0.047473,-0.060037,46.126,0.046213,0.99868,-0.022215,-10.574,0.061013,0.019375,0.99795,-50.131
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.99707,-0.047473,-0.060037,44.747,0.046213,0.99868,-0.022215,-13.258,0.061013,0.019375,0.99795,-50.714
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.99707,-0.047473,-0.060037,47.71,0.046213,0.99868,-0.022215,-13.528,0.061013,0.019375,0.99795,-49.962
Drag select of 89 1x_Cage-units.mrc
> select add #89
3 models selected
> hide #!89 models
> select subtract #89
Nothing selected
> select add #88
18009 atoms, 18401 bonds, 2210 residues, 5 models selected
> hide #88.4 models
> select subtract #88.4
12222 atoms, 12479 bonds, 1501 residues, 4 models selected
> select add #88.4
18009 atoms, 18401 bonds, 2210 residues, 5 models selected
> show #88.4 models
> view matrix models
> #88,0.99707,-0.047473,-0.060037,48.238,0.046213,0.99868,-0.022215,-11.397,0.061013,0.019375,0.99795,-49.715
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.99879,-0.044181,-0.0217,26.118,0.041698,0.99371,-0.10392,35.781,0.026155,0.10289,0.99435,-46.261
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.99879,-0.044181,-0.0217,26.355,0.041698,0.99371,-0.10392,34.695,0.026155,0.10289,0.99435,-44.283
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.99695,-0.075574,-0.01968,34.864,0.073244,0.99228,-0.10008,11.608,0.027092,0.098337,0.99478,-43.942
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.99695,-0.075574,-0.01968,33.972,0.073244,0.99228,-0.10008,14.504,0.027092,0.098337,0.99478,-43.96
> view matrix models
> #88,0.99695,-0.075574,-0.01968,32.926,0.073244,0.99228,-0.10008,15.405,0.027092,0.098337,0.99478,-39.467
> view orient
> turn x 90\
Expected a number or a keyword
> turn x 90\
Expected a number or a keyword
> turn x 90
[Repeated 2 time(s)]
> turn y 90
[Repeated 1 time(s)]
> view matrix models
> #88,0.99695,-0.075574,-0.01968,33.032,0.073244,0.99228,-0.10008,15.483,0.027092,0.098337,0.99478,-39.417
> view matrix models
> #88,0.99695,-0.075574,-0.01968,33.36,0.073244,0.99228,-0.10008,15.735,0.027092,0.098337,0.99478,-39.377
> undo
> ui mousemode right "rotate selected models"
> view matrix models
> #88,0.99618,-0.077223,0.040798,2.3094,0.079343,0.99543,-0.053183,-14.059,-0.036505,0.056217,0.99775,13.362
> ui mousemode right "translate selected models"
> view matrix models
> #88,0.99618,-0.077223,0.040798,2.1834,0.079343,0.99543,-0.053183,-13.449,-0.036505,0.056217,0.99775,6.6304
> view matrix models
> #88,0.99618,-0.077223,0.040798,2.0241,0.079343,0.99543,-0.053183,-13.504,-0.036505,0.056217,0.99775,6.6262
> hide #!88 models
> select subtract #88
Nothing selected
> show #!87 models
> select add #87
48888 atoms, 49914 bonds, 6004 residues, 13 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.43746,0.89821,-0.042858,500.79,-0.89858,0.43483,-0.058897,461.41,-0.034266,0.064277,0.99734,480.08
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.43746,0.89821,-0.042858,495.88,-0.89858,0.43483,-0.058897,463.75,-0.034266,0.064277,0.99734,479.37
> view matrix models
> #87,0.43746,0.89821,-0.042858,495.4,-0.89858,0.43483,-0.058897,463.33,-0.034266,0.064277,0.99734,479.34
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.40576,0.91274,-0.047619,502.07,-0.91324,0.4028,-0.061133,466.17,-0.036617,0.068294,0.99699,479.86
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.40576,0.91274,-0.047619,504.37,-0.91324,0.4028,-0.061133,469.14,-0.036617,0.068294,0.99699,479.88
> ui mousemode right "rotate selected models"
> view matrix models
> #87,0.38092,0.92318,-0.051351,509.54,-0.9238,0.37769,-0.062745,471.12,-0.038531,0.071339,0.99671,480.3
> ui mousemode right "translate selected models"
> view matrix models
> #87,0.38092,0.92318,-0.051351,510.26,-0.9238,0.37769,-0.062745,472.52,-0.038531,0.071339,0.99671,480.27
> select subtract #87.12
43892 atoms, 44828 bonds, 5392 residues, 12 models selected
> select add #87.12
48888 atoms, 49914 bonds, 6004 residues, 13 models selected
> select subtract #87
Nothing selected
> select add #87.1
4987 atoms, 5078 bonds, 611 residues, 1 model selected
> select add #87.2
6435 atoms, 6557 bonds, 792 residues, 2 models selected
> select add #87.3
12222 atoms, 12479 bonds, 1501 residues, 3 models selected
> select add #87.4
18009 atoms, 18401 bonds, 2210 residues, 4 models selected
> select add #87.5
19448 atoms, 19871 bonds, 2390 residues, 5 models selected
> select add #87.6
24444 atoms, 24957 bonds, 3002 residues, 6 models selected
> select add #87.7
29431 atoms, 30035 bonds, 3613 residues, 7 models selected
> select subtract #87.7
24444 atoms, 24957 bonds, 3002 residues, 6 models selected
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/2xPflAB_Jian.pdb selectedOnly true
> hide #!87 models
> select add #87
48888 atoms, 49914 bonds, 6004 residues, 13 models selected
> select subtract #87
Nothing selected
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/2xPflAB_Jian.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/Model_From_Jian/July_2024/2xPflAB_Jian.pdb
---
warnings | End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
Chain information for 2xPflAB_Jian.pdb
---
Chain | Description
90.1/A 90.6/A | No description available
90.2/A | No description available
90.5/A | No description available
90.3/B 90.4/C | No description available
> view orient
> show #!113 models
> view orient
> sym #90 C9 copies true center #113
Made 9 copies for 2xPflAB_Jian.pdb, 2xPflAB_Jian.pdb, 2xPflAB_Jian.pdb,
2xPflAB_Jian.pdb, 2xPflAB_Jian.pdb, 2xPflAB_Jian.pdb symmetry C9
> hide #!91.1 models
> show #!91.1 models
> hide #!91.2 models
> show #!91.2 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
> show #!6 models
> show #!7 models
> show #!8 models
> show #!9 models
> show #!10 models
> show #!11 models
> show #!12 models
> show #!13 models
> show #!14 models
> show #!15 models
> show #!17 models
> show #!18 models
> show #!19 models
> show #!87 models
> hide #!87 models
> show #!87 models
> hide #!87 models
> hide #!1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> show #!14 models
> hide #!15 models
> hide #!17 models
> hide #!18 models
> hide #!19 models
> hide #!14 models
> hide #!20 models
> show #!87 models
> close #88
> show #90.1 models
> hide #90.1 models
> hide #!90 models
> hide #!91 models
> show #!91 models
> hide #!91 models
> show #!89 models
> hide #!89 models
> hide #!91.1 models
> show #!91.1 models
> hide #!91 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/One-units.pdb
Chain information for One-units.pdb
---
Chain | Description
88.1/A | No description available
88.2/A | No description available
88.3/B 88.4/C | No description available
> close #88
> show #!90 models
> hide #!87 models
> hide #!90 models
> show #!90 models
> show #90.1 models
> show #90.2 models
> show #90.3 models
> show #90.4 models
> hide #90.4 models
> select add #90
24444 atoms, 24957 bonds, 3002 residues, 7 models selected
> select subtract #90
Nothing selected
> select add #90.1
4987 atoms, 5078 bonds, 611 residues, 1 model selected
> select add #90.2
6435 atoms, 6557 bonds, 792 residues, 2 models selected
> select add #90.3
12222 atoms, 12479 bonds, 1501 residues, 3 models selected
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/One-units.pdb selectedOnly true
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_From_Jian/July_2024/One-units.pdb
Chain information for One-units.pdb
---
Chain | Description
88.1/A | No description available
88.2/A | No description available
88.3/B | No description available
> select add #90
24444 atoms, 24957 bonds, 3002 residues, 7 models selected
> hide #!90 models
> select subtract #90
Nothing selected
> hide #!88 models
> show #!88 models
> view orient
> close #91
> sym #88 C18 copies true center #113
Made 18 copies for One-units.pdb, One-units.pdb, One-units.pdb symmetry C18
> select add #91
219996 atoms, 224622 bonds, 27018 residues, 73 models selected
Alignment identifier is 1
Alignment identifier is 2
Alignment identifier is 3
> select #91.1.1/A:181 #91.2.1/A:181 #91.3.1/A:181 #91.4.1/A:181 #91.5.1/A:181
> #91.6.1/A:181 #91.7.1/A:181 #91.8.1/A:181 #91.9.1/A:181 #91.10.1/A:181
> #91.11.1/A:181 #91.12.1/A:181 #91.13.1/A:181 #91.14.1/A:181 #91.15.1/A:181
> #91.16.1/A:181 #91.17.1/A:181 #91.18.1/A:181
162 atoms, 144 bonds, 18 residues, 18 models selected
> select #91.1.1/A:181-720 #91.2.1/A:181-720 #91.3.1/A:181-720
> #91.4.1/A:181-720 #91.5.1/A:181-720 #91.6.1/A:181-720 #91.7.1/A:181-720
> #91.8.1/A:181-720 #91.9.1/A:181-720 #91.10.1/A:181-720 #91.11.1/A:181-720
> #91.12.1/A:181-720 #91.13.1/A:181-720 #91.14.1/A:181-720 #91.15.1/A:181-720
> #91.16.1/A:181-720 #91.17.1/A:181-720 #91.18.1/A:181-720
79380 atoms, 80928 bonds, 9720 residues, 18 models selected
1 [ID: 1] region 18 chains [1-540] RMSD: 399.747
> select #91.1.1/A:746-791 #91.2.1/A:746-791 #91.3.1/A:746-791
> #91.4.1/A:746-791 #91.5.1/A:746-791 #91.6.1/A:746-791 #91.7.1/A:746-791
> #91.8.1/A:746-791 #91.9.1/A:746-791 #91.10.1/A:746-791 #91.11.1/A:746-791
> #91.12.1/A:746-791 #91.13.1/A:746-791 #91.14.1/A:746-791 #91.15.1/A:746-791
> #91.16.1/A:746-791 #91.17.1/A:746-791 #91.18.1/A:746-791
6642 atoms, 6678 bonds, 828 residues, 18 models selected
> select #91.1.1/A #91.2.1/A #91.3.1/A #91.4.1/A #91.5.1/A #91.6.1/A #91.7.1/A
> #91.8.1/A #91.9.1/A #91.10.1/A #91.11.1/A #91.12.1/A #91.13.1/A #91.14.1/A
> #91.15.1/A #91.16.1/A #91.17.1/A #91.18.1/A
89766 atoms, 91404 bonds, 10998 residues, 18 models selected
1 [ID: 1] region 18 chains [1-611] RMSD: 387.185
> color sel #e193ffff
> color sel #7c7ccd
> select #91.1.2/A:181 #91.2.2/A:181 #91.3.2/A:181 #91.4.2/A:181 #91.5.2/A:181
> #91.6.2/A:181 #91.7.2/A:181 #91.8.2/A:181 #91.9.2/A:181 #91.10.2/A:181
> #91.11.2/A:181 #91.12.2/A:181 #91.13.2/A:181 #91.14.2/A:181 #91.15.2/A:181
> #91.16.2/A:181 #91.17.2/A:181 #91.18.2/A:181
162 atoms, 144 bonds, 18 residues, 18 models selected
> select #91.1.2/A #91.2.2/A #91.3.2/A #91.4.2/A #91.5.2/A #91.6.2/A #91.7.2/A
> #91.8.2/A #91.9.2/A #91.10.2/A #91.11.2/A #91.12.2/A #91.13.2/A #91.14.2/A
> #91.15.2/A #91.16.2/A #91.17.2/A #91.18.2/A
26064 atoms, 26622 bonds, 3258 residues, 18 models selected
2 [ID: 2] region 18 chains [1-181] RMSD: 532.936
> color sel #7c7ccd
> select clear
> select #91.1.3/B:752-844 #91.2.3/B:752-844 #91.3.3/B:752-844
> #91.4.3/B:752-844 #91.5.3/B:752-844 #91.6.3/B:752-844 #91.7.3/B:752-844
> #91.8.3/B:752-844 #91.9.3/B:752-844 #91.10.3/B:752-844 #91.11.3/B:752-844
> #91.12.3/B:752-844 #91.13.3/B:752-844 #91.14.3/B:752-844 #91.15.3/B:752-844
> #91.16.3/B:752-844 #91.17.3/B:752-844 #91.18.3/B:752-844
13680 atoms, 13932 bonds, 1674 residues, 18 models selected
> select #91.1.3/B #91.2.3/B #91.3.3/B #91.4.3/B #91.5.3/B #91.6.3/B #91.7.3/B
> #91.8.3/B #91.9.3/B #91.10.3/B #91.11.3/B #91.12.3/B #91.13.3/B #91.14.3/B
> #91.15.3/B #91.16.3/B #91.17.3/B #91.18.3/B
104166 atoms, 106596 bonds, 12762 residues, 18 models selected
3 [ID: 3] region 18 chains [1-709] RMSD: 512.352
> color sel #003f5e
> select clear
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver3_FlgY_2024.cxs includeMaps true
——— End of log from Mon Jul 1 19:41:19 2024 ———
opened ChimeraX session
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_from_Jack/HP_FlgY.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/Model_from_Jack/HP_FlgY.pdb
---
warnings | End residue of secondary structure not found: HELIX 1 1 LYS A 22 ALA A 31 1 10
Start residue of secondary structure not found: HELIX 2 2 LYS A 89 ILE A 93 1
5
Start residue of secondary structure not found: HELIX 3 3 THR A 152 ASN A 160
1 9
Start residue of secondary structure not found: HELIX 4 4 LEU A 211 VAL A 217
1 7
Start residue of secondary structure not found: HELIX 5 5 VAL A 218 ASN A 220
1 3
Start residue of secondary structure not found: HELIX 6 6 LEU A 258 TYR A 261
1 4
42 messages similar to the above omitted
Chain information for HP_FlgY.pdb
---
Chain | Description
92.1/A 92.2/B | No description available
> show #!512 models
Drag select of 211 residues
> select add #92
3172 atoms, 3208 bonds, 398 residues, 3 models selected
> view matrix models #92,1,0,0,561.65,0,1,0,576.37,0,0,1,342.16
> view matrix models #92,1,0,0,583.01,0,1,0,571.97,0,0,1,468.91
> view matrix models #92,1,0,0,614.27,0,1,0,493.69,0,0,1,460.46
> view matrix models #92,1,0,0,612.8,0,1,0,492.1,0,0,1,466.83
> view matrix models #92,1,0,0,586.6,0,1,0,522.55,0,0,1,472.77
> view matrix models #92,1,0,0,587.12,0,1,0,523.17,0,0,1,474.35
> color #512 #ff93003e models
> color #512 #ff93003d models
> view matrix models #92,1,0,0,583.51,0,1,0,529.21,0,0,1,473.24
> view orient
> sym #92 C13 copies true center #113
Made 13 copies for HP_FlgY.pdb, HP_FlgY.pdb symmetry C13
> hide #!92 models
> select subtract #92
Nothing selected
Drag select of 26 residues
> select add #94
41236 atoms, 41704 bonds, 5174 residues, 40 models selected
Alignment identifier is 4
> select #94.1.1/A:164 #94.1.2/B:164 #94.2.1/A:164 #94.2.2/B:164 #94.3.1/A:164
> #94.3.2/B:164 #94.4.1/A:164 #94.4.2/B:164 #94.5.1/A:164 #94.5.2/B:164
> #94.6.1/A:164 #94.6.2/B:164 #94.7.1/A:164 #94.7.2/B:164 #94.8.1/A:164
> #94.8.2/B:164 #94.9.1/A:164 #94.9.2/B:164 #94.10.1/A:164 #94.10.2/B:164
> #94.11.1/A:164 #94.11.2/B:164 #94.12.1/A:164 #94.12.2/B:164 #94.13.1/A:164
> #94.13.2/B:164
234 atoms, 208 bonds, 26 residues, 26 models selected
> select #94.1.1/A:164-199 #94.1.2/B:164-199 #94.2.1/A:164-199
> #94.2.2/B:164-199 #94.3.1/A:164-199 #94.3.2/B:164-199 #94.4.1/A:164-199
> #94.4.2/B:164-199 #94.5.1/A:164-199 #94.5.2/B:164-199 #94.6.1/A:164-199
> #94.6.2/B:164-199 #94.7.1/A:164-199 #94.7.2/B:164-199 #94.8.1/A:164-199
> #94.8.2/B:164-199 #94.9.1/A:164-199 #94.9.2/B:164-199 #94.10.1/A:164-199
> #94.10.2/B:164-199 #94.11.1/A:164-199 #94.11.2/B:164-199 #94.12.1/A:164-199
> #94.12.2/B:164-199 #94.13.1/A:164-199 #94.13.2/B:164-199
7124 atoms, 7358 bonds, 936 residues, 26 models selected
4 [ID: 4] region 26 chains [164-199] RMSD: 205.048
> hide sel surfaces
> hide sel cartoons
> hide sel atoms
> select add #94
41236 atoms, 41704 bonds, 5174 residues, 40 models selected
> select subtract #94
Nothing selected
> select add #94.1
3172 atoms, 3208 bonds, 398 residues, 3 models selected
> select subtract #94.1
Nothing selected
> select add #94.1.1
1586 atoms, 1604 bonds, 199 residues, 1 model selected
> select add #94.2.1
3172 atoms, 3208 bonds, 398 residues, 2 models selected
> select add #94.3.1
4758 atoms, 4812 bonds, 597 residues, 3 models selected
> select add #94.4.1
6344 atoms, 6416 bonds, 796 residues, 4 models selected
> select add #94.5.1
7930 atoms, 8020 bonds, 995 residues, 5 models selected
> select add #94.6.1
9516 atoms, 9624 bonds, 1194 residues, 6 models selected
> select add #94.7.1
11102 atoms, 11228 bonds, 1393 residues, 7 models selected
> select add #94.8.1
12688 atoms, 12832 bonds, 1592 residues, 8 models selected
> select add #94.9.1
14274 atoms, 14436 bonds, 1791 residues, 9 models selected
> select add #94.10.1
15860 atoms, 16040 bonds, 1990 residues, 10 models selected
> select add #94.11.1
17446 atoms, 17644 bonds, 2189 residues, 11 models selected
> select add #94.12.1
19032 atoms, 19248 bonds, 2388 residues, 12 models selected
> select add #94.13.1
20618 atoms, 20852 bonds, 2587 residues, 13 models selected
> color sel #magenta
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword
> color sel magenta
> select clear
> select add #94.1.2
1586 atoms, 1604 bonds, 199 residues, 1 model selected
> select add #94.2.2
3172 atoms, 3208 bonds, 398 residues, 2 models selected
> select add #94.3.2
4758 atoms, 4812 bonds, 597 residues, 3 models selected
> select add #94.4.2
6344 atoms, 6416 bonds, 796 residues, 4 models selected
> select add #94.5.2
7930 atoms, 8020 bonds, 995 residues, 5 models selected
> select add #94.6.2
9516 atoms, 9624 bonds, 1194 residues, 6 models selected
> select add #94.7.2
11102 atoms, 11228 bonds, 1393 residues, 7 models selected
> select add #94.8.2
12688 atoms, 12832 bonds, 1592 residues, 8 models selected
> select add #94.9.2
14274 atoms, 14436 bonds, 1791 residues, 9 models selected
> select add #94.10.2
15860 atoms, 16040 bonds, 1990 residues, 10 models selected
> select add #94.11.2
17446 atoms, 17644 bonds, 2189 residues, 11 models selected
> select add #94.12.2
19032 atoms, 19248 bonds, 2388 residues, 12 models selected
> select add #94.13.2
20618 atoms, 20852 bonds, 2587 residues, 13 models selected
> color sel orchid
> select clear
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver3_FlgY_2024.cxs includeMaps true
> hide #!38 models
> hide #!91 models
> show #!91 models
> hide #!88 models
> close #503
> close #505#504,506
> show #!479 models
> show #!20 models
> show #!21 models
> show #!22 models
> show #!23 models
> show #!24 models
> show #!25 models
> show #!26 models
> show #!27 models
> show #!28 models
> show #!29 models
> show #!30 models
> show #!31 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!36 models
> show #!37 models
> ui tool show "Side View"
> view orient
> hide #!512 models
> hide #!91 models
> view orient
> color #113 #9292927a models
> color #113 #92929274 models
> color #113 #929292ff models
> color #113 #92929282 models
> color #113 #929292ff models
> volume #20 level 0.1958
> volume #20 level 0.15
> save /Users/shoichitachiyama/Desktop/Fig3_07012024.png supersample 2
> transparentBackground true
> turn x 30
> turn x -30
[Repeated 1 time(s)]
> color #113 #9292927e models
> color #113 #9292926e models
> save /Users/shoichitachiyama/Desktop/Fig3-2_07012024.png supersample 2
> transparentBackground true
> hide #!20 models
> hide #!21 models
> hide #!21-479 models
> show #!94 models
> show #!92 models
> hide #!92 models
> show #!92 models
> show #92.1 models
> hide #92.1 models
> show #92.1 models
> hide #92.1 models
> hide #!92 models
> hide #!94.2 models
> hide #!94.3 models
> hide #!94.4 models
> hide #!94.5 models
> hide #!94.6 models
> hide #!94.7 models
> hide #!94.8 models
> hide #!94.9 models
> hide #!94.10 models
> hide #!94.11 models
> hide #!94.12 models
> hide #!94.13 models
> save /Users/shoichitachiyama/Desktop/Fig3-2-FlgY_07012024.png supersample 2
> transparentBackground true
> show #!94.2 models
> show #!94.3 models
> show #!94.4 models
> show #!94.5 models
> show #!94.6 models
> show #!94.7 models
> show #!94.8 models
> show #!94.9 models
> show #!94.10 models
> show #!94.11 models
> show #!94.12 models
> show #!94.13 models
> hide #!94 models
> show #!1 models
> show #!2 models
> show #!3 models
> color #1 #9850ffff models
> show #!3-15 models
> show #!17-19 models
> show #!20 models
> show #!21 models
> show #!20-37models
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> show #!20-37 models
> show #!38 models
> show #!40 models
> show #!39 models
> show #!41 models
> show #!42 models
> show #!43 models
> show #!44 models
> show #!45 models
> show #!46 models
> show #!47 models
> show #!48 models
> show #!49 models
> show #!50 models
> show #!51 models
> show #!54 models
> show #!55 models
> show #!56 models
> show #!57 models
> color #38 #0067b6ff models
> show #!93 models
> hide #!93 models
> show #!70 models
> hide #!70 models
> show #!143 models
> show #!145 models
> hide #!145 models
> hide #!143 models
> show #!93 models
> color #93 #ff39fcff models
> show #!71 models
> show #!73 models
> show #!73-84 models
> show #!86 models
> show #!58 models
> show #!59 models
> show #!72 models
> show #!121 models
> show #!122 models
> show #!123 models
> show #!195 models
> show #!196 models
> show #!197 models
> show #!198 models
> show #!199 models
> show #!200 models
> show #!201 models
> show #!202 models
> show #!203 models
> show #!204 models
> show #!205 models
> show #!206 models
> show #!207 models
> show #!208 models
> show #!209 models
> show #!210 models
> show #!211 models
> show #!212 models
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver3_FlgY_2024.cxs includeMaps true
> show #!16 models
> show #!62 models
> ui tool show "Side View"
> hide #!62 models
> show #!66 models
> hide #!66 models
> show #64 models
> hide #64 models
> show #!69 models
> hide #!69 models
> hide #!71 models
> show #!101 models
> show #!101-112 models
> show #!113 models
> show #!114 models
> show #!115 models
> hide #!115 models
> show #!115 models
> hide #!115 models
> close #115
> show #!116 models
> show #!117 models
> show #!118 models
> show #!119 models
> show #!120 models
> show #!124 models
> show #!125 models
> show #!126 models
> show #!127 models
> show #!128 models
> show #!129 models
> show #!130 models
> show #!131 models
> show #!132 models
> show #!133 models
> show #!134 models
> show #!135 models
> show #!136 models
> show #!137 models
> show #!138 models
> show #!139 models
> show #!140 models
> show #!141 models
> show #!143 models
> hide #!143 models
> show #!144 models
> hide #!144 models
> show #!146 models
> show #!146-164 models
> show #!177 models
> show #!259 models
> show #!281-298 models
> show #!312 models
> show #!313 models
> show #!316 models
> color #313 #9797974d models
> color #313 #979797ba models
> color #313 #979797dd models
> color #313 #979797de models
> volume #313 level 0.1261
> volume #316 level 0.0498
> color #313 #979797ff models
> color #313 #acacacff models
> color #313 #8eac8dff models
> color #313 #9dac9eff models
> color #313 #92ac9cff models
> color #313 #acacacff models
> color #316 #acacacff models
> color #312 #727272ff models
> show #!513 models
> show #!514 models
> color #514 #929292ff models
> color #514 #727272ff models
> volume #312 region 120,0,0,239,239,239
> volume #313 region 120,0,0,239,239,239
> volume #313 region 60,0,0,239,239,239
> volume #313 region 120,0,0,239,239,239
> volume #313 region 30,0,0,239,239,239
> volume #313 region 50,0,0,239,239,239
> volume #313 region 60,0,0,239,239,239
> volume #313 region 55,0,0,239,239,239
> hide #!149 models
> hide #!150 models
> hide #!148 models
> hide #!147 models
> hide #!146 models
> hide #!164 models
> hide #!163 models
> hide #!212 models
> show #!212 models
> hide #!195 models
> show #!195 models
> hide #!202 models
> show #!202 models
> hide #!205 models
> show #!205 models
> hide #!206 models
> hide #!207 models
> hide #!208 models
> hide #!209 models
> hide #!210 models
> hide #!211 models
> show #!211 models
> hide #!73 models
> show #!73 models
> hide #!83 models
> hide #!84 models
> hide #!82 models
> hide #!86 models
> hide #!58 models
> show #!58 models
> hide #!59 models
> show #!59 models
> hide #!121 models
> hide #!57 models
> show #!57 models
> hide #!54 models
> hide #!55 models
> show #!55 models
> hide #!55 models
> hide #!51 models
> show #!51 models
> hide #!51 models
> hide #!50 models
> hide #!49 models
> hide #!141 models
> show #!141 models
> hide #!140 models
> hide #!139 models
> hide #!138 models
> hide #!137 models
> hide #!136 models
> hide #!135 models
> hide #!513 models
> hide #!514 models
> show #!49 models
> show #!50 models
> show #!51 models
> show #!54 models
> show #!55 models
> hide #!177 models
> hide #!281 models
> hide #!281-298 models
> hide #!313 models
> hide #!316 models
> hide #!312 models
> hide #!16 models
> show #!163 models
> hide #!259 models
> show #!479 models
> save /Users/shoichitachiyama/Desktop/Test_07012024.png supersample 2
> transparentBackground true
> color #113 #9292920a models
> color #113 #92929266 models
> color #72-81 #92929266 models
> color #101-141 #92929266 models
> color #58-59 #92929266 models
> save /Users/shoichitachiyama/Desktop/Test_07012024.png supersample 2
> transparentBackground true
> hide #!58 models
> hide #!59 models
> hide #!72 models
> hide #!73 models
> hide #!74 models
> hide #!75 models
> hide #!76 models
> hide #!77 models
> hide #!78 models
> hide #!79 models
> hide #!80 models
> hide #!81 models
> hide #!122 models
> hide #!123 models
> hide #!124 models
> hide #!125 models
> hide #!126 models
> hide #!127 models
> hide #!128 models
> hide #!129 models
> hide #!130 models
> hide #!131 models
> hide #!132 models
> hide #!133 models
> hide #!134 models
> show #!164 models
> show #!146 models
> show #!147 models
> show #!148 models
> show #!149 models
> show #!150 models
> show #!206 models
> show #!207 models
> show #!208 models
> show #!209 models
> show #!210 models
> hide #!113 models
> view orient
> turn x 90
[Repeated 2 time(s)]
> turn x 20
[Repeated 2 time(s)]
> show #!113 models
> color #38 #0067b6b0 models
> color #38 #0067b6ff models
> color #20 #9aa3a0ff models
> color #20 #7b4fa3ff models
> color #20 #99a394ff models
> color #23 #929292af models
> color #23 #929292ff models
> color #209 #4a9ed288 models
> color #209 #4a9ed2ff models
> color #1 #9850ffa4 models
> color #1 #9850ffff models
> color #113 #92929259 models
> color #113 #92929266 models
> color #479 #5da36d86 models
> color #479 #5da36dff models
> color #1-57 #92929266 models
> color #195-212 #92929266 models
> color #146-164 #92929266 models
> save /Users/shoichitachiyama/Desktop/Test1_07012024.png supersample 2
> transparentBackground true
> color #93 #92929266 models
> color #1-15 #9850ffff models
> color #17-18 #9850ffff models
> color #17-19 #9850ffff models
> save /Users/shoichitachiyama/Desktop/Test2_07012024.png supersample 2
> transparentBackground true
> color #1-19 #92929266 models
> color #38-51 #0067b6ff models
> color #54-57 #0067b6ff models
> save /Users/shoichitachiyama/Desktop/Test3_07012024.png supersample 2
> transparentBackground true
> color #1-15 #9850ffff models
> color #17-19 #9850ffff models
> color #93 magenta models
> color #93 #ff39fcff models
> save /Users/shoichitachiyama/Desktop/Test4_07012024.png supersample 2
> transparentBackground true
> undo
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Model_ver3_FlgY_2024.cxs includeMaps true
——— End of log from Mon Jul 1 22:18:22 2024 ———
opened ChimeraX session
> ui tool show "Surface Color"
> color radial #93.1 palette #fd06ff:#ffffff:#ab23f5
> color radial #93.1 palette 57.34,#fd06ff:154,#d36fff:250.6,#ab23f5
> color radial #93.1 palette 57.34,#fd06ff:154,#d36fff:250.6,#9806ff
> color radial #93.1 palette 57.34,#fd06ff:154,#f100f9:250.6,#9806ff
> color radial #93.1 palette 57.34,#fd06ff:154,#d443f9:250.6,#9806ff
> color radial #93.1 palette 57.34,#fd06ff:154,#d443f9:250.6,#9850ff
> color radial #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff
> color radial #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff center
> 0,10,0
> color radial #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff
> color cylindrical #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff
[Repeated 2 time(s)]
> color cylindrical #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff axis
> 0,0,0
[Repeated 1 time(s)]
> color cylindrical #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff
> color cylindrical #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff axis
> 0,0,3
> color cylindrical #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff
> color cylindrical #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff axis
> 0,1,0
> color cylindrical #93.1 palette 57.34,#fd06ff:154,#ee97f3:250.6,#9850ff axis
> 0,0,0
> color cylindrical #93.1 palette 57.34,#f707ee:154,#ee97f3:250.6,#9850ff axis
> 0,0,0
[Repeated 1 time(s)]
> color cylindrical #93.1 palette 57.34,#f707ee:154,#9850ff axis 0,0,0
> color cylindrical #93.1 palette 57.34,#f707ee:154,#f707ee:250.6,#9850ff axis
> 0,0,0
[Repeated 3 time(s)]
> color cylindrical #93.1 palette 57.34,#f707ee:154,#9850ff:250.6,#9850ff axis
> 0,0,0
> color radial #93.1 palette 57.34,#f707ee:154,#9850ff:250.6,#9850ff
[Repeated 1 time(s)]
> color height #93.1 palette 57.34,#f707ee:154,#9850ff:250.6,#9850ff axis
> 0,0,0
> color gradient #93.1 map #113 palette
> 57.34,#f707ee:154,#9850ff:250.6,#9850ff
Map values for surface "surface": minimum 0, mean 0.002304, maximum 0.01243
> color sample #93.1 map #113 palette 57.34,#f707ee:154,#9850ff:250.6,#9850ff
Map values for surface "surface": minimum -0.08306, mean -0.01194, maximum
0.03093
> color radial #93.1 palette 57.34,#f707ee:154,#9850ff:250.6,#9850ff
> color radial #93.1 palette 57.34,#f707ee:154,#f707ee:250.6,#9850ff
[Repeated 1 time(s)]
> color radial #93.1 palette 57.34,#f707ee:154,#9850ff
[Repeated 1 time(s)]
> color radial #93.1 palette 200.34,#f707ee:154,#9850ff
[Repeated 1 time(s)]
> color radial #93.1 palette 50.34,#f707ee:154,#9850ff
> color radial #93.1 palette 90.34,#f707ee:154,#9850ff
> color radial #93.1 palette 120.34,#f707ee:154,#9850ff
> color radial #93.1 palette 120.34,#f707ee:120,#9850ff
> color radial #93.1 palette 120.34,#f707ee:240,#9850ff
> color radial #93.1 palette 120.34,#f707ee:200,#9850ff
> color radial #93.1 palette 120.34,#f707ee:180,#9850ff
> color radial #93.1 palette 120.34,#f707ee:220,#9850ff
> color radial #93.1 palette 120.34,#f707ee:210,#9850ff
> color radial #93.1 palette 120.34,#f707ee:200,#9850ff
[Repeated 1 time(s)]
> color radial #93.1 palette 130.34,#f707ee:200,#9850ff
> color radial #93.1 palette 150.34,#f707ee:200,#9850ff
> view orient
[Repeated 1 time(s)]
> turn -x 90
[Repeated 4 time(s)]
> turn x 20
> turn x -20
> turn x 30
> turn x -30
> turn x 40
> view name Tilt
> show #!16 models
> show #!58 models
> hide #!58 models
> show #!58 models
> show #!59 models
> show #!62 models
> hide #!62 models
> show #!73 models
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> show #!136 models
> show #!137 models
> show #!138 models
> show #!139 models
> show #!140 models
> view orient
> turn x 90
[Repeated 2 time(s)]
> turn y 90
> turn x 40
> view name Tilt
> turn x -40
> view name Side
> color #84 #b7916ac0 models
> color #84 #b7916aff models
> color #73-84 #b7916aff models
> color #68-59 #b7916aff models
> color #58-59 #b7916aff models
> show #!68 models
> hide #!68 models
> color #121-123 #b7916aff models
> color #195-212 #4a9ed2ff models
> color #146-164 #d3e6ebff models
> show #!373 models
> show #!372 models
> show #!371 models
> show #!370 models
> hide #!370 models
> show #!370 models
> hide #!370 models
> show #!370 models
> hide #!370 models
> hide #!146 models
> hide #!146-212 models
> show #!356-373 models
> show #!356-418 models
> show #!313 models
> show #!316 models
> volume #313 level 0.07017
> volume #316 level 0.03227
> hide #!356 models
> hide #!373 models
> hide #!372 models
> hide #!371 models
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> hide #!369 models
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> hide #!418 models
> show #!418 models
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> hide #!82 models
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> hide #!121 models
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> show #!56 models
> hide #!55 models
> hide #!54 models
> hide #!51 models
> hide #!50 models
> hide #!49 models
> hide #!48 models
> FliL: color #101-112 #ffd856ff models
Unknown command: FliL: color #101-112 #ffd856ff models
> color #101-112 #ffd856ff models
> color #114-120 #ffd856ff models
> hide #!120 models
> show #!120 models
> hide #!119 models
> hide #!118 models
> hide #!117 models
> hide #!116 models
> hide #!114 models
> hide #!113 models
> show #!113 models
> hide #!112 models
> color #112 #b4a057ff models
> hide #!120 models
> show #!120 models
> color #120 #bda85cff models
> color #120 #b6a258ff models
> color #120 #b7a359ff models
> color #114-120 #b7a359ff models
> color #101-112 #b7a359ff models
> hide #!124 models
> show #!124 models
> hide #!129 models
> show #!129 models
> hide #!141 models
> show #!141 models
> hide #!138 models
> show #!138 models
> color #138 #a3502066 models
> color #138 #a34d1a66 models
> color #138 #a3541866 models
> color #138 #a35418ff models
> color #138 #a36e16ff models
> color #138 #a3671aff models
> color #138 #a36a14ff models
> color #138 #905d12ff models
> color #124-141 #905d12ff models
> hide #!138 models
> hide #!139 models
> hide #!140 models
> show #!140 models
> hide #!137 models
> hide #!136 models
> hide #!135 models
> hide #!134 models
> hide #!1 models
> show #!1 models
> hide #!19 models
> show #!19 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> hide #!11 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!17 models
> color #20 #9292925f models
> color #20 #929292ff models
> color #20-37 #929292ff models
> hide #!37 models
> show #!37 models
> hide #!35 models
> hide #!34 models
> hide #!33 models
> hide #!32 models
> hide #!31 models
> hide #!30 models
> volume #93 region 120,0,0,239,239,239
> volume #93 region 100,0,0,239,239,239
> color #113 #929292ff models
> color #16 #929292ff models
> show #!312 models
> show #!484 models
> color #484 #dbdbdbff models
> color #313 #acacac88 models
> color #313 #acacacff models
> color #484 #acacacff models
> show #!177 models
> hide #!177.15 models
> show #!177.15 models
> hide #!177.1 models
> show #!177.1 models
> hide #!177.7 models
> show #!177.7 models
> hide #!177.29 models
> hide #!177.28 models
> hide #!177.27 models
> hide #!177.26 models
> hide #!177.30 models
> hide #!177.31 models
> hide #!177.25 models
> hide #!177.24 models
> hide #!177.32 models
> hide #!177.33 models
> show #!481 models
> show #!513 models
> show #!514 models
> show #!259 models
> color #484 #acacacff models
> hide #!484 models
> show #!484 models
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
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> select down
Nothing selected
> select down
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Nothing selected
> select down
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> select down
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Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
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Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> volume #484 region 100,0,0,239,239,239
> volume #484 region 110,0,0,239,239,239
> volume #484 region 113,0,0,239,239,239
> volume #484 region 112,0,0,239,239,239
> select add #313
2 models selected
> ui mousemode right "rotate selected models"
> select subtract #313
Nothing selected
> select add #484
2 models selected
> view matrix models
> #484,0.99519,-0.097129,0.012842,293.31,0.097191,0.99526,-0.0043197,235.84,-0.012362,0.0055471,0.99991,177.83
> undo
[Repeated 1 time(s)]
> view orient
> ui tool show "Side View"
> select add #484
3 models selected
> view matrix models
> #484,0.99948,-0.032338,-0.00049882,277.14,0.032337,0.99948,-0.00080508,255.82,0.00052459,0.00078853,1,174.75
> view matrix models
> #484,0.99871,-0.050846,-0.00048382,282.39,0.050846,0.99871,-0.00081418,249.79,0.00052459,0.00078853,1,174.75
> view matrix models
> #484,0.99833,-0.057703,-0.00047822,284.37,0.057703,0.99833,-0.00081748,247.59,0.00052459,0.00078853,1,174.75
> select subtract #484
Nothing selected
> turn x 90
[Repeated 2 time(s)]
> turn y 90
> color #313 #bababaff models
> color #313 #c8c8c8ff models
> color #313 #cbcbcbff models
> color #313 #cfcfcfff models
> color #313 #cdcdcdff models
> color #313 #acacacff models
> color #313 #d4d4d4ff models
> color #313 #d5d5d5ff models
> color #316 #d5d5d5ff models
> color #312 #727272cd models
> color #312 #727272ff models
> color #513-514 #727272ff models
> color #16 #727272ff models
> color #481 #727272ff models
> color #259 #727272ff models
> show #!281 models
> hide #!281 models
> show #!281 models
> show #!282 models
> show #!283 models
> show #!284 models
> hide #!284 models
> show #!284 models
> show #!285 models
> show #!298 models
> show #!297 models
> show #!296 models
> show #!295 models
> show #!294 models
> show #!293 models
> color #281 #ded28bff models
> hide #!293 models
> show #!293 models
> color #293 #ded584ff models
> color #293 #dec859ff models
> color #293 #dec05cff models
> color #293 #deb932ff models
> color #293 #dec242ff models
> color #293 #decf42ff models
> color #293 #ada134ff models
> color #293 #a39931ff models
> color #293 #a59a31ff models
> color #293 #a69b32ff models
> color #281-298 #a69b32ff models
> color #484 #d5d5d5ff models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/C.jejuni/Wild-type-
> maps_April12_2024/Chimera-segmentation_April_12_2024/Segments/PL-ring.mrc
Opened PL-ring.mrc as #95, grid size 250,250,250, pixel 4.3, shown at level
0.0226, step 1, values float32
Drag select of 95 PL-ring.mrc
> close #95
> open "/Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-univ-G/PflA-
> PflB/Manuscript-Start2023/Start/Previous=work-focus-on PflAB/Working-
> Figures/2023-July_Maps/Whole-motor-bin2/Segmentations/PL-rings.mrc"
Opened PL-rings.mrc as #95, grid size 270,270,270, pixel 4.3, shown at level
0.00825, step 2, values float32
> select add #95
2 models selected
> view matrix models
> #95,0.97795,0.19666,-0.070246,-60.082,-0.16805,0.94081,0.29434,-38.625,0.12397,-0.27604,0.95312,114.53
> close #95
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/H.pylori-Karen/For-
> Figure/20230301/For-Figure-Feb152023/PilNO_Segment/PilNO_PL-ring.mrc
Opened PilNO_PL-ring.mrc as #95, grid size 120,120,120, pixel 8.59, shown at
level 6.53e-05, step 1, values float32
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-
> seminar/2024/Structural_Seminar_2024/Figure_images/New_PL-ring.mrc
Opened New_PL-ring.mrc as #96, grid size 240,240,240, pixel 4.3, shown at
level 0.0141, step 1, values float32
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Slide-
> seminar/2024/Structural_Seminar_2024/Figure_images/Outer-ring-near-PL.mrc
Opened Outer-ring-near-PL.mrc as #97, grid size 240,240,240, pixel 4.3, shown
at level 0.0141, step 1, values float32
> undo
Drag select of 96 New_PL-ring.mrc , 97 Outer-ring-near-PL.mrc
> ui tool show "Fit in Map"
> fitmap #96 inMap #95
Fit map New_PL-ring.mrc in map PilNO_PL-ring.mrc using 133541 points
correlation = 0.8313, correlation about mean = 0.8629, overlap = 615.4
steps = 212, shift = 24, angle = 0.971 degrees
Position of New_PL-ring.mrc (#96) relative to PilNO_PL-ring.mrc (#95)
coordinates:
Matrix rotation and translation
0.99985670 -0.01692745 0.00020690 8.58335550
0.01692759 0.99985649 -0.00067797 -8.32498825
-0.00019539 0.00068138 0.99999975 23.78547692
Axis 0.04011679 0.01187215 0.99912446
Axis point 512.41919343 445.82697808 0.00000000
Rotation angle (degrees) 0.97077187
Shift along axis 24.01015304
> fitmap #96 inMap #95
Fit map New_PL-ring.mrc in map PilNO_PL-ring.mrc using 133541 points
correlation = 0.8313, correlation about mean = 0.8629, overlap = 614.9
steps = 192, shift = 0.148, angle = 0.274 degrees
Position of New_PL-ring.mrc (#96) relative to PilNO_PL-ring.mrc (#95)
coordinates:
Matrix rotation and translation
0.99976443 -0.02170383 0.00017355 11.10892972
0.02170392 0.99976428 -0.00057134 -10.80749565
-0.00016111 0.00057498 0.99999982 23.67905214
Axis 0.02639824 0.00770661 0.99962180
Axis point 511.61379626 477.24379426 0.00000000
Rotation angle (degrees) 1.24410867
Shift along axis 23.88006383
> fitmap #96 inMap #95
Fit map New_PL-ring.mrc in map PilNO_PL-ring.mrc using 133541 points
correlation = 0.8313, correlation about mean = 0.8629, overlap = 614.8
steps = 48, shift = 0.133, angle = 0.02 degrees
Position of New_PL-ring.mrc (#96) relative to PilNO_PL-ring.mrc (#95)
coordinates:
Matrix rotation and translation
0.99975775 -0.02200739 0.00032753 11.10100110
0.02200755 0.99975768 -0.00049144 -11.04616840
-0.00031664 0.00049853 0.99999983 23.85932760
Axis 0.02248339 0.01463000 0.99964017
Axis point 523.06145230 474.20746284 0.00000000
Rotation angle (degrees) 1.26149087
Shift along axis 23.93872493
> fitmap #97 inMap #95
Fit map Outer-ring-near-PL.mrc in map PilNO_PL-ring.mrc using 131747 points
correlation = 0.8906, correlation about mean = 0.9362, overlap = 573.5
steps = 72, shift = 20.6, angle = 0.0409 degrees
Position of Outer-ring-near-PL.mrc (#97) relative to PilNO_PL-ring.mrc (#95)
coordinates:
Matrix rotation and translation
0.99999975 -0.00055858 -0.00043297 0.49445392
0.00055862 0.99999984 0.00010323 -0.45596555
0.00043291 -0.00010347 0.99999990 20.46987870
Axis -0.14469460 -0.60614791 0.78207940
Axis point -16775.61455615 5092.76855508 0.00000000
Rotation angle (degrees) 0.04092352
Shift along axis 16.21390816
> fitmap #97 inMap #95
Fit map Outer-ring-near-PL.mrc in map PilNO_PL-ring.mrc using 131747 points
correlation = 0.8907, correlation about mean = 0.9363, overlap = 572.7
steps = 80, shift = 0.212, angle = 0.0559 degrees
Position of Outer-ring-near-PL.mrc (#97) relative to PilNO_PL-ring.mrc (#95)
coordinates:
Matrix rotation and translation
0.99999906 -0.00137311 0.00005762 0.55477667
0.00137312 0.99999905 -0.00011233 -0.76760351
-0.00005747 0.00011241 0.99999999 20.47510490
Axis 0.08149126 0.04173396 0.99579991
Axis point 1178.55999247 -807.61243063 0.00000000
Rotation angle (degrees) 0.07900569
Shift along axis 20.40228183
> fitmap #97 inMap #95
Fit map Outer-ring-near-PL.mrc in map PilNO_PL-ring.mrc using 131747 points
correlation = 0.8907, correlation about mean = 0.9364, overlap = 572.8
steps = 60, shift = 0.111, angle = 0.033 degrees
Position of Outer-ring-near-PL.mrc (#97) relative to PilNO_PL-ring.mrc (#95)
coordinates:
Matrix rotation and translation
0.99999818 -0.00190095 -0.00016597 1.01865970
0.00190094 0.99999819 -0.00005308 -1.01740874
0.00016607 0.00005277 0.99999998 20.39242078
Axis 0.02772458 -0.08697259 0.99582484
Axis point -399.00736394 238.37525343 0.00000000
Rotation angle (degrees) 0.10937280
Shift along axis 20.42400779
> hide #!95 models
> show #!95 models
> hide #!95 models
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/New-H.pylori-
> projects/Localization_of_accessory/Reverse-contrast-Hpwt-
> bin2/Segmentations/Hpwt-L0.08-Global-PL.mrc
Opened Hpwt-L0.08-Global-PL.mrc as #115, grid size 240,240,240, pixel 4.3,
shown at level 0.0148, step 1, values float32
> select add #115
6 models selected
> open /Users/shoichi/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-documents/New-H.pylori-
> projects/Localization_of_accessory/Reverse-contrast-Hpwt-
> bin2/Hpwt-L0.08-rev.mrc
Opened Hpwt-L0.08-rev.mrc as #142, grid size 240,240,240, pixel 4.3, shown at
level 0.14, step 1, values float32
> select add #142
8 models selected
> volume #142 level 0.04246
> select subtract #115
6 models selected
> select subtract #97
4 models selected
> select subtract #96.1
3 models selected
> select add #96
4 models selected
> select subtract #96
2 models selected
> ui mousemode right "translate selected models"
> view matrix models #142,1,0,0,39,0,1,0,-5.6486,0,0,1,17.598
> fitmap #142 inMap #312
Fit map Hpwt-L0.08-rev.mrc in map Disk.mrc gaussian using 1192541 points
correlation = 0.3912, correlation about mean = 0.2625, overlap = 1894
steps = 96, shift = 32.9, angle = 2.23 degrees
Position of Hpwt-L0.08-rev.mrc (#142) relative to Disk.mrc gaussian (#312)
coordinates:
Matrix rotation and translation
0.99924318 -0.03858008 -0.00496361 44.29552085
0.03858047 0.99925550 -0.00001629 2.09377299
0.00496055 -0.00017522 0.99998768 19.84300848
Axis -0.00204289 -0.12756594 0.99182799
Axis point -95.95015617 1151.05034208 0.00000000
Rotation angle (degrees) 2.22926236
Shift along axis 19.32326627
> fitmap #142 inMap #312
Fit map Hpwt-L0.08-rev.mrc in map Disk.mrc gaussian using 1192541 points
correlation = 0.3912, correlation about mean = 0.2625, overlap = 1894
steps = 24, shift = 0.0181, angle = 0.00415 degrees
Position of Hpwt-L0.08-rev.mrc (#142) relative to Disk.mrc gaussian (#312)
coordinates:
Matrix rotation and translation
0.99924038 -0.03865229 -0.00496624 44.33393013
0.03865270 0.99925271 -0.00001432 2.05080568
0.00496308 -0.00017765 0.99998767 19.85988621
Axis -0.00209565 -0.12739668 0.99184963
Axis point -94.58154918 1149.90106275 0.00000000
Rotation angle (degrees) 2.23338881
Shift along axis 19.34384651
> fitmap #142 inMap #312
Fit map Hpwt-L0.08-rev.mrc in map Disk.mrc gaussian using 1192541 points
correlation = 0.3912, correlation about mean = 0.2625, overlap = 1894
steps = 24, shift = 0.00382, angle = 0.00152 degrees
Position of Hpwt-L0.08-rev.mrc (#142) relative to Disk.mrc gaussian (#312)
coordinates:
Matrix rotation and translation
0.99923935 -0.03867879 -0.00496723 44.34793827
0.03867919 0.99925168 -0.00001381 2.03468458
0.00496405 -0.00017833 0.99998766 19.86234072
Axis -0.00210948 -0.12733542 0.99185747
Axis point -94.06068376 1149.47507648 0.00000000
Rotation angle (degrees) 2.23490270
Shift along axis 19.34797238
> view orient
> turn x 90
[Repeated 2 time(s)]
> ui tool show "Side View"
> fitmap #115 inMap #142
Fit map Hpwt-L0.08-Global-PL.mrc in map Hpwt-L0.08-rev.mrc using 132863 points
correlation = 0.9998, correlation about mean = 0.9997, overlap = 726.6
steps = 320, shift = 37.9, angle = 2.23 degrees
Position of Hpwt-L0.08-Global-PL.mrc (#115) relative to Hpwt-L0.08-rev.mrc
(#142) coordinates:
Matrix rotation and translation
0.99999999 0.00013160 -0.00008747 -0.02504571
-0.00013161 0.99999999 -0.00010688 0.11990196
0.00008746 0.00010689 0.99999999 -0.09573869
Axis 0.56026985 -0.45848613 -0.68984648
Axis point 900.72640368 177.80054552 0.00000000
Rotation angle (degrees) 0.01093035
Shift along axis -0.00296074
> fitmap #115 inMap #142
Fit map Hpwt-L0.08-Global-PL.mrc in map Hpwt-L0.08-rev.mrc using 132863 points
correlation = 0.9998, correlation about mean = 0.9997, overlap = 726.7
steps = 276, shift = 0.00611, angle = 0.00677 degrees
Position of Hpwt-L0.08-Global-PL.mrc (#115) relative to Hpwt-L0.08-rev.mrc
(#142) coordinates:
Matrix rotation and translation
0.99999999 0.00013121 0.00001865 -0.06797813
-0.00013121 0.99999999 -0.00005506 0.09632329
-0.00001866 0.00005506 1.00000000 -0.01097605
Axis 0.38367741 0.12999223 -0.91427221
Axis point 737.58761020 507.83631560 0.00000000
Rotation angle (degrees) 0.00822252
Shift along axis -0.00352529
> fitmap #96 inMap #115
Fit map New_PL-ring.mrc in map Hpwt-L0.08-Global-PL.mrc using 133541 points
correlation = 0.9997, correlation about mean = 0.9996, overlap = 374.7
steps = 224, shift = 31.1, angle = 0.994 degrees
Position of New_PL-ring.mrc (#96) relative to Hpwt-L0.08-Global-PL.mrc (#115)
coordinates:
Matrix rotation and translation
1.00000000 0.00002383 0.00001365 -0.02288682
-0.00002383 1.00000000 0.00004876 0.00403739
-0.00001365 -0.00004876 1.00000000 0.14377815
Axis -0.87133836 0.24392098 -0.42576052
Axis point 0.00000000 2596.77879217 -284.25057185
Rotation angle (degrees) 0.00320642
Shift along axis -0.04028809
> fitmap #97 inMap #115
Fit map Outer-ring-near-PL.mrc in map Hpwt-L0.08-Global-PL.mrc using 131747
points
correlation = 0.9995, correlation about mean = 0.9993, overlap = 376.5
steps = 116, shift = 30.9, angle = 2.12 degrees
Position of Outer-ring-near-PL.mrc (#97) relative to Hpwt-L0.08-Global-PL.mrc
(#115) coordinates:
Matrix rotation and translation
1.00000000 0.00002296 0.00001425 -0.03097448
-0.00002296 1.00000000 -0.00001498 -0.00949185
-0.00001425 0.00001498 1.00000000 -0.05118442
Axis 0.48473609 0.46137129 -0.74307971
Axis point -788.08763249 1742.75151333 0.00000000
Rotation angle (degrees) 0.00177018
Shift along axis 0.01864039
> fitmap #97 inMap #115
Fit map Outer-ring-near-PL.mrc in map Hpwt-L0.08-Global-PL.mrc using 131747
points
correlation = 0.9994, correlation about mean = 0.9992, overlap = 375.7
steps = 48, shift = 0.0896, angle = 0.001 degrees
Position of Outer-ring-near-PL.mrc (#97) relative to Hpwt-L0.08-Global-PL.mrc
(#115) coordinates:
Matrix rotation and translation
1.00000000 0.00002854 0.00001672 -0.03565347
-0.00002854 1.00000000 -0.00003141 0.00564216
-0.00001672 0.00003141 1.00000000 -0.14778955
Axis 0.68868705 0.36652890 -0.62559309
Axis point 0.00000000 3311.23501965 -636.88468142
Rotation angle (degrees) 0.00261346
Shift along axis 0.06997005
> select add #142
3 models selected
> select subtract #142
Nothing selected
> hide #!142 models
> hide #!115 models
> color #97 #727272ff models
> color #96 #c5fac9ff models
> color #96 #c4facaff models
> turn y 90
> surface dust #96-97 size 58.49
> volume gaussian #96 sDev 3
Opened New_PL-ring.mrc gaussian as #165, grid size 240,240,240, pixel 4.3,
shown at step 1, values float32
Drag select of 165 New_PL-ring.mrc gaussian
> select clear
Drag select of 165 New_PL-ring.mrc gaussian
> select up
536156 atoms, 543676 bonds, 70631 residues, 617 models selected
> select up
536156 atoms, 543676 bonds, 70631 residues, 617 models selected
> select up
536156 atoms, 543676 bonds, 22 pseudobonds, 70631 residues, 844 models
selected
> surface dust #165 size 58.49
> surface dust #165 size 90
> surface dust #165 size 120
> surface dust #165 size 200
> select clear
> color #165 #c4facaff models
> hide #!165 models
> show #!165 models
> color #165 #a4bfa5ff models
> color #165 #90a891ff models
> color #165 #92aa93ff models
> view name Side2
> save /Users/shoichi/Desktop/HP_motor1_07022024.png supersample 2
> transparentBackground true
> save /Users/shoichi/Desktop/HP_Model_FlgY_Ver4.cxs includeMaps true
——— End of log from Tue Jul 2 15:40:56 2024 ———
opened ChimeraX session
> turn x 90
> hide #!16 models
> show #!30 models
> show #!31 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!48 models
> show #!49 models
> show #!50 models
> show #!51 models
> show #!54 models
> show #!55 models
> hide #!73 models
> hide #!74 models
> hide #!75 models
> hide #!76 models
> hide #!77-80 models
> hide #!97 models
> show #!112 models
> show #!114 models
> show #!116 models
> show #!117 models
> show #!118 models
> show #!119 models
> hide #!122 models
> hide #!123 models
> hide #!124-141 models
> hide #!165 models
> show #!286 models
> show #!287 models
> show #!288 models
> show #!289 models
> show #!290 models
> show #!291 models
> show #!292 models
> hide #!312 models
> hide #!313 models
> hide #!316 models
> hide #!514 models
> hide #!513 models
> hide #!357-389 models
> show #!195-212 models
> hide #!59 models
> hide #!58 models
> show #!11 models
> show #!12 models
> show #!13 models
> show #!14 models
> show #!15 models
> show #!17 models
Must specify 6 comma-separated integers, got 0,0,0,220,220,220.
> select add #93
2 models selected
> select subtract #93
Nothing selected
Must specify 6 comma-separated integers, got 0,0,0,220,220,220.
Must specify 6 comma-separated integers, got 0,0,0,239,239,239.
Must specify 6 comma-separated integers, got 0,0,0,239,239,239.
> volume #93 region 0,0,0,220,220,220
> ui tool show "Surface Color"
> color radial #93.1 palette 150.3,#f707ee:200,#9850ff center
> 537.1,537.14,546.36
> color radial #93.1 palette 150.3,#f707ee:220,#9850ff center
> 537.1,537.14,546.36
> color radial #93.1 palette 150.3,#f707ee:230,#9850ff center
> 537.1,537.14,546.36
[Repeated 1 time(s)]
> color radial #93.1 palette 150.3,#f707ee:225,#9850ff center
> 537.1,537.14,546.36
> color radial #93.1 palette 150.3,#f707ee:220,#9850ff center
> 537.1,537.14,546.36
> color radial #93.1 palette 150,#f707ee:220,#9850ff center
> 537.1,537.14,546.36
> color radial #93.1 palette 140,#f707ee:220,#9850ff center
> 537.1,537.14,546.36
[Repeated 1 time(s)]
> save /Users/shoichi/Desktop/HP_motor2_07022024.png supersample 2
> transparentBackground true
> view Tilt
> save /Users/shoichi/Desktop/HP_Model_FlgY_Ver4.cxs includeMaps true
——— End of log from Tue Jul 2 16:30:21 2024 ———
opened ChimeraX session
> hide #!17 models
> hide #!18 models
> hide #!19 models
> hide #!20 models
> hide #!21 models
> hide #!22 models
> hide #!23 models
> hide #!24 models
> hide #!25 models
> hide #!26 models
> hide #!28 models
> hide #!29 models
> hide #!27 models
> hide #!30 models
> hide #!31 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> hide #!36 models
> hide #!37 models
> hide #!1-484 models
> show #!1 models
> show #!20 models
> show #!38 models
> show #!58 models
> open "/Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Jian_Model/07022024/pflA-B-models-202307-02 2.pdb"
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/July_2024/Jian_Model/07022024/pflA-B-
models-202307-02 2.pdb
---
warnings | Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
37158 messages similar to the above omitted
Chain information for pflA-B-models-202307-02 2.pdb #166
---
Chain | Description
A | No description available
B | No description available
C | No description available
Drag select of 22 atoms
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> show sel cartoons
> ui mousemode right "translate selected models"
> view matrix models #166,1,0,0,435.05,0,1,0,300.27,0,0,1,279.05
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.70117,0.70827,0.081994,504.87,-0.71294,0.69795,0.067685,447.33,-0.0092893,-0.10591,0.99433,279.97
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.70117,0.70827,0.081994,429.4,-0.71294,0.69795,0.067685,414.91,-0.0092893,-0.10591,0.99433,287.11
> view matrix models
> #166,0.70117,0.70827,0.081994,378.95,-0.71294,0.69795,0.067685,471.67,-0.0092893,-0.10591,0.99433,434.39
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.48947,0.86883,0.074534,426.77,-0.87095,0.49131,-0.0075097,506.06,-0.043144,-0.06124,0.99719,442.11
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.48947,0.86883,0.074534,494.93,-0.87095,0.49131,-0.0075097,454.26,-0.043144,-0.06124,0.99719,457.07
> view matrix models
> #166,0.48947,0.86883,0.074534,510.8,-0.87095,0.49131,-0.0075097,474.55,-0.043144,-0.06124,0.99719,487.66
> view matrix models
> #166,0.48947,0.86883,0.074534,501.48,-0.87095,0.49131,-0.0075097,463.89,-0.043144,-0.06124,0.99719,490.15
> view matrix models
> #166,0.48947,0.86883,0.074534,475.95,-0.87095,0.49131,-0.0075097,456.43,-0.043144,-0.06124,0.99719,484.94
> view matrix models
> #166,0.48947,0.86883,0.074534,488.29,-0.87095,0.49131,-0.0075097,456.72,-0.043144,-0.06124,0.99719,485
> view matrix models
> #166,0.48947,0.86883,0.074534,490.4,-0.87095,0.49131,-0.0075097,456.5,-0.043144,-0.06124,0.99719,485.22
> view matrix models
> #166,0.48947,0.86883,0.074534,488.8,-0.87095,0.49131,-0.0075097,455.75,-0.043144,-0.06124,0.99719,485.69
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.29896,0.95318,0.04553,531.96,-0.95334,0.30043,-0.02975,471.99,-0.042036,-0.034511,0.99852,485.73
> view matrix models
> #166,0.35255,-0.93209,0.083216,495.77,-0.91393,-0.36206,-0.18345,461.35,0.20112,-0.011378,-0.9795,510.8
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.35255,-0.93209,0.083216,480.9,-0.91393,-0.36206,-0.18345,456.85,0.20112,-0.011378,-0.9795,505.64
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.020967,-0.9995,0.023567,553.75,-0.98515,-0.024673,-0.16992,475.8,0.17042,-0.019654,-0.98518,512.36
> view matrix models
> #166,-0.16126,-0.9869,-0.0054974,594.25,-0.97494,0.16017,-0.15441,475.27,0.15326,-0.01954,-0.98799,516.17
> ui mousemode right "translate selected models"
> view matrix models
> #166,-0.16126,-0.9869,-0.0054974,574.65,-0.97494,0.16017,-0.15441,487.61,0.15326,-0.01954,-0.98799,514.26
> view matrix models
> #166,-0.16126,-0.9869,-0.0054974,575.17,-0.97494,0.16017,-0.15441,487.66,0.15326,-0.01954,-0.98799,512.16
> ui mousemode right "rotate selected models"
> view matrix models
> #166,-0.16091,-0.98074,0.11071,570.64,-0.98436,0.15132,-0.090178,487.07,0.071688,-0.12349,-0.98975,528.51
> view matrix models
> #166,-0.18857,-0.97469,0.12009,576.3,-0.96424,0.16056,-0.21086,487.56,0.18624,-0.15555,-0.97011,502.7
> show #!89 models
> hide #!89 models
> show #!90 models
> hide #!90 models
> show #!89 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/Sep11_2023/PflA-2.1A-230911.mrc
Opened PflA-2.1A-230911.mrc as #167, grid size 240,240,240, pixel 2.1, shown
at level 4.29, step 1, values float32
> volume #167 level 2.118
> view matrix models
> #166,0.6667,0.29258,-0.6855,439.26,0.024959,0.91045,0.41287,259.61,0.74491,-0.29237,0.59969,319.61
> view matrix models
> #166,0.90448,0.23917,-0.35314,374.48,-0.2821,0.95647,-0.074749,345.26,0.31989,0.16723,0.93258,403.74
> view matrix models
> #166,0.95421,0.23259,-0.1881,357.26,-0.27778,0.92229,-0.26874,351.47,0.11098,0.30869,0.94467,449.96
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.95421,0.23259,-0.1881,-51.153,-0.27778,0.92229,-0.26874,-204,0.11098,0.30869,0.94467,71.204
> view matrix models
> #166,0.95421,0.23259,-0.1881,18.057,-0.27778,0.92229,-0.26874,15.593,0.11098,0.30869,0.94467,-103.94
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.9671,0.2406,-0.082658,11.272,-0.21931,0.95313,0.20846,-15.212,0.12894,-0.18347,0.97453,-115.03
> view matrix models
> #166,0.96211,0.24385,-0.12198,13.918,-0.24189,0.96981,0.030812,-3.2227,0.12581,-0.00013851,0.99205,-112.78
> view matrix models
> #166,0.96867,0.20258,0.14367,1.6437,-0.20069,0.97926,-0.027672,-9.6934,-0.1463,-0.0020282,0.98924,-54.142
> color #167 #b2b2b22e models
> color #167 #b2b2b27d models
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.96867,0.20258,0.14367,-171.74,-0.20069,0.97926,-0.027672,25.635,-0.1463,-0.0020282,0.98924,-34.277
> view matrix models
> #166,0.96867,0.20258,0.14367,-168.65,-0.20069,0.97926,-0.027672,22.278,-0.1463,-0.0020282,0.98924,-2.6286
> view matrix models
> #166,0.96867,0.20258,0.14367,-179.05,-0.20069,0.97926,-0.027672,20.949,-0.1463,-0.0020282,0.98924,-2.8607
> ui tool show "Side View"
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.98559,0.090902,0.14267,-184.02,-0.090428,0.99585,-0.0098161,-3.2683,-0.14297,-0.003227,0.98972,-3.6095
> view matrix models
> #166,0.98263,0.094877,0.15951,-183.99,0.098581,-0.99501,-0.015449,-68.209,0.15725,0.030905,-0.98708,9.2677
> view matrix models
> #166,0.97923,-0.14362,0.14311,-185.56,-0.13913,-0.98943,-0.040965,-15.995,0.14748,0.020203,-0.98886,11.307
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.97923,-0.14362,0.14311,-198.41,-0.13913,-0.98943,-0.040965,-17.555,0.14748,0.020203,-0.98886,10.655
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.97654,-0.14523,0.15902,-198.47,-0.13883,-0.98902,-0.050651,-17.235,0.16463,0.027386,-0.98598,6.9417
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.97654,-0.14523,0.15902,-196.56,-0.13883,-0.98902,-0.050651,-22.812,0.16463,0.027386,-0.98598,-11.087
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.96227,-0.22386,0.15467,-194.29,-0.21882,-0.97453,-0.049079,-5.4831,0.16172,0.013381,-0.98675,-10.605
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.96227,-0.22386,0.15467,-208.91,-0.21882,-0.97453,-0.049079,0.24283,0.16172,0.013381,-0.98675,-13.195
> view matrix models
> #166,0.96227,-0.22386,0.15467,-212.08,-0.21882,-0.97453,-0.049079,0.22257,0.16172,0.013381,-0.98675,-14.492
> view matrix models
> #166,0.96227,-0.22386,0.15467,-209.82,-0.21882,-0.97453,-0.049079,-2.3057,0.16172,0.013381,-0.98675,-40.004
> select subtract #166
Nothing selected
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 1 model selected
> select subtract #166
Nothing selected
> ui tool show "Fit in Map"
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 1.475, steps = 104
shifted from previous position = 11.8
rotated from previous position = 4.93 degrees
atoms outside contour = 35614, contour level = 2.1176
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.96874078 -0.15306858 0.19522128 -202.43696610
-0.15397052 -0.98801818 -0.01063929 -15.75470209
0.19451071 -0.01975161 -0.98070153 -42.22825806
Axis -0.99215438 0.07736711 -0.09820391
Axis point 0.00000000 -15.79596521 -11.05900242
Rotation angle (degrees) 179.73688594
Shift along axis 203.77680765
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 1.475, steps = 44
shifted from previous position = 0.0338
rotated from previous position = 0.00183 degrees
atoms outside contour = 35618, contour level = 2.1176
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.96874123 -0.15307137 0.19521686 -202.44293704
-0.15396704 -0.98801839 -0.01067071 -15.75071110
0.19451122 -0.01971980 -0.98070207 -42.19487690
Axis -0.99215450 0.07736692 -0.09820291
Axis point 0.00000000 -15.79396543 -11.04237721
Rotation angle (degrees) 179.73871189
Shift along axis 203.77974612
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 1.475, steps = 40
shifted from previous position = 0.0033
rotated from previous position = 0.00592 degrees
atoms outside contour = 35615, contour level = 2.1176
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.96874740 -0.15306312 0.19519271 -202.44201928
-0.15397790 -0.98801776 -0.01057107 -15.75119476
0.19447190 -0.01981467 -0.98070796 -42.18947191
Axis -0.99215605 0.07736748 -0.09818679
Axis point 0.00000000 -15.79476135 -11.04060186
Rotation angle (degrees) 179.73309601
Shift along axis 203.77789266
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 1.475, steps = 44
shifted from previous position = 0.0443
rotated from previous position = 0.00856 degrees
atoms outside contour = 35628, contour level = 2.1176
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.96875708 -0.15305265 0.19515285 -202.43866335
-0.15399468 -0.98801667 -0.01042840 -15.75751170
0.19441036 -0.01994991 -0.98071742 -42.22000789
Axis -0.99215849 0.07736891 -0.09816103
Axis point 0.00000000 -15.79874116 -11.05756818
Rotation angle (degrees) 179.72507189
Shift along axis 203.77645608
> volume #167 level 0.956
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 1.475, steps = 40
shifted from previous position = 0.00843
rotated from previous position = 0.0018 degrees
atoms outside contour = 30816, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.96875140 -0.15305522 0.19517904 -202.43850893
-0.15399460 -0.98801651 -0.01044474 -15.75556215
0.19443873 -0.01993816 -0.98071203 -42.21851034
Axis -0.99215706 0.07736964 -0.09817492
Axis point 0.00000000 -15.79776240 -11.05551051
Rotation angle (degrees) 179.72588281
Shift along axis 203.77659159
> open /Users/shoichi/Desktop/hp_model/HP-PflA-PflB-2.1A.mrc
Opened HP-PflA-PflB-2.1A.mrc as #168, grid size 240,240,240, pixel 2.14, shown
at level 4.32, step 1, values float32
> hide #!168 models
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.94331,-0.25058,0.21764,-199.04,-0.25533,-0.96683,-0.0064932,6.1555,0.21205,-0.049445,-0.97601,-46.555
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.94331,-0.25058,0.21764,-202.61,-0.25533,-0.96683,-0.0064932,14.797,0.21205,-0.049445,-0.97601,-49.498
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 1.475, steps = 100
shifted from previous position = 7.9
rotated from previous position = 6.1 degrees
atoms outside contour = 30804, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.96875049 -0.15307118 0.19517105 -202.44315396
-0.15397292 -0.98801785 -0.01063535 -15.75098276
0.19446045 -0.01974806 -0.98071157 -42.19560505
Axis -0.99215683 0.07736818 -0.09817835
Axis point 0.00000000 -15.79440505 -11.04500479
Rotation angle (degrees) 179.73687544
Shift along axis 203.77942795
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 1.475, steps = 40
shifted from previous position = 0.00118
rotated from previous position = 0.00645 degrees
atoms outside contour = 30804, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.96874927 -0.15305962 0.19518617 -202.44266831
-0.15398347 -0.98801740 -0.01052430 -15.75262752
0.19445818 -0.01986004 -0.98070976 -42.19564205
Axis -0.99215652 0.07736797 -0.09818164
Axis point 0.00000000 -15.79581754 -11.04381343
Rotation angle (degrees) 179.73043546
Shift along axis 203.77890208
> select subtract #166
Nothing selected
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.8934,-0.18837,0.40786,-194.95,0.21236,0.97709,-0.013895,-70.28,-0.3959,0.099029,0.91294,12.484
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.8934,-0.18837,0.40786,-207.25,0.21236,0.97709,-0.013895,-36.17,-0.3959,0.099029,0.91294,15.462
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 492
shifted from previous position = 19.9
rotated from previous position = 26.9 degrees
atoms outside contour = 22181, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999964 -0.00024439 0.00081879 -214.14795077
0.00024462 0.99999995 -0.00028629 6.48967116
-0.00081873 0.00028649 0.99999964 -65.01307771
Axis 0.31778828 0.90851590 0.27131066
Axis point -53070.50743362 0.00000000 230546.22140323
Rotation angle (degrees) 0.05163533
Shift along axis -79.79648018
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 44
shifted from previous position = 0.0106
rotated from previous position = 0.00274 degrees
atoms outside contour = 22174, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999960 -0.00026369 0.00086122 -214.15242521
0.00026392 0.99999995 -0.00027535 6.48619231
-0.00086116 0.00027558 0.99999961 -64.99292771
Axis 0.29246323 0.91433962 0.28008627
Axis point -51215.44307847 0.00000000 223198.87668330
Rotation angle (degrees) 0.05396525
Shift along axis -74.90475485
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 40
shifted from previous position = 0.0444
rotated from previous position = 0.00926 degrees
atoms outside contour = 22198, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999972 -0.00020772 0.00073840 -214.13614481
0.00020799 0.99999993 -0.00036440 6.49702597
-0.00073833 0.00036456 0.99999968 -65.06365184
Axis 0.42917295 0.86943062 0.24474677
Axis point -54358.27457145 0.00000000 230589.34440929
Rotation angle (degrees) 0.04865874
Shift along axis -102.17684672
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 36
shifted from previous position = 0.00452
rotated from previous position = 0.00225 degrees
atoms outside contour = 22195, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999974 -0.00019867 0.00070061 -214.13321981
0.00019892 0.99999994 -0.00035822 6.49478230
-0.00070055 0.00035837 0.99999971 -65.07341346
Axis 0.44146273 0.86320070 0.24493919
Axis point -56330.58942387 0.00000000 239538.27735470
Rotation angle (degrees) 0.04650174
Shift along axis -104.86456391
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 36
shifted from previous position = 0.0363
rotated from previous position = 0.00572 degrees
atoms outside contour = 22181, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999969 -0.00024682 0.00076384 -214.14598652
0.00024705 0.99999994 -0.00029788 6.48996026
-0.00076377 0.00029807 0.99999968 -65.02536344
Axis 0.34799714 0.89203700 0.28838858
Axis point -52209.89519213 0.00000000 240473.80429529
Rotation angle (degrees) 0.04905955
Shift along axis -87.48547895
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.465, steps = 28
shifted from previous position = 0.02
rotated from previous position = 0.00545 degrees
atoms outside contour = 22173, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999961 -0.00027755 0.00084727 -214.15725217
0.00027777 0.99999995 -0.00026409 6.47953073
-0.00084720 0.00026432 0.99999962 -64.98770062
Axis 0.28412369 0.91110769 0.29859087
Axis point -50610.97665494 0.00000000 227804.57217521
Rotation angle (degrees) 0.05327928
Shift along axis -74.34833190
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 36
shifted from previous position = 0.0201
rotated from previous position = 0.00498 degrees
atoms outside contour = 22182, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999968 -0.00025104 0.00077144 -214.14603989
0.00025127 0.99999994 -0.00029708 6.48986781
-0.00077137 0.00029727 0.99999968 -65.02350230
Axis 0.34396225 0.89285348 0.29069335
Axis point -51704.06524347 0.00000000 238882.97058429
Rotation angle (degrees) 0.04950239
Shift along axis -86.76555357
> save /Users/shoichi/Desktop/HP_Model_FlgY_Ver4-fitting.cxs includeMaps true
——— End of log from Tue Jul 2 19:24:30 2024 ———
opened ChimeraX session
> hide #!1 models
> hide #!58 models
> hide #!89 models
> select add #167
55466 atoms, 56638 bonds, 6819 residues, 3 models selected
> show #!85 models
> ui tool show "Side View"
> hide #!38 models
> show #!38 models
> hide #!38 models
> show #!39 models
> hide #!39 models
> show #!38 models
> hide #!38 models
> show #!57 models
> color #85 #ffb2ff82 models
> color #85 #ffb2ff77 models
> show #!84 models
> hide #!84 models
> show #!86 models
> hide #!86 models
> show #!71 models
> hide #!71 models
> hide #!57 models
> ui mousemode right "translate selected models"
> view matrix models
> #166,1,-0.00025104,0.00077144,-96.121,0.00025127,1,-0.00029708,348.57,-0.00077137,0.00029727,1,304.46,#167,1,0,0,118.03,0,1,0,342.08,0,0,1,369.49
> view matrix models
> #166,1,-0.00025104,0.00077144,-30.688,0.00025127,1,-0.00029708,220.52,-0.00077137,0.00029727,1,154.73,#167,1,0,0,183.46,0,1,0,214.03,0,0,1,219.76
> view matrix models
> #166,1,-0.00025104,0.00077144,268.58,0.00025127,1,-0.00029708,271.58,-0.00077137,0.00029727,1,454.25,#167,1,0,0,482.73,0,1,0,265.09,0,0,1,519.27
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.67073,0.73684,-0.08474,339.99,-0.73668,0.64856,-0.19152,414.7,-0.086161,0.19088,0.97782,472.75,#167,0.67048,0.73704,-0.085038,473.26,-0.73699,0.64843,-0.19076,240.26,-0.085454,0.19057,0.97795,516.81
> view matrix models
> #166,0.18898,0.9629,-0.19265,435.92,-0.95524,0.13479,-0.26335,454.99,-0.22762,0.23379,0.94527,500.8,#167,0.18859,0.963,-0.19251,457.54,-0.95547,0.13463,-0.26258,232.44,-0.22695,0.23345,0.94551,512.17
> view matrix models
> #166,0.1028,0.97964,-0.17244,450.42,-0.96058,0.052758,-0.27295,455.95,-0.2583,0.1937,0.94645,505.99,#167,0.10243,0.97972,-0.17223,454.79,-0.9608,0.052598,-0.2722,232.15,-0.25762,0.19336,0.9467,511.13
> view matrix models
> #166,0.084636,0.99439,-0.063495,446.97,-0.96741,0.066741,-0.24428,455.49,-0.23867,0.0821,0.96762,500.25,#167,0.084337,0.99443,-0.063265,454.46,-0.96761,0.066571,-0.24351,232.01,-0.23794,0.081753,0.96783,511.7
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.084636,0.99439,-0.063495,470.4,-0.96741,0.066741,-0.24428,459.15,-0.23867,0.0821,0.96762,533.23,#167,0.084337,0.99443,-0.063265,477.89,-0.96761,0.066571,-0.24351,235.67,-0.23794,0.081753,0.96783,544.68
> view matrix models
> #166,0.084636,0.99439,-0.063495,580.64,-0.96741,0.066741,-0.24428,490.25,-0.23867,0.0821,0.96762,545.43,#167,0.084337,0.99443,-0.063265,588.14,-0.96761,0.066571,-0.24351,266.77,-0.23794,0.081753,0.96783,556.87
> view matrix models
> #166,0.084636,0.99439,-0.063495,582.65,-0.96741,0.066741,-0.24428,491,-0.23867,0.0821,0.96762,550.82,#167,0.084337,0.99443,-0.063265,590.14,-0.96761,0.066571,-0.24351,267.52,-0.23794,0.081753,0.96783,562.27
> view matrix models
> #166,0.084636,0.99439,-0.063495,596.46,-0.96741,0.066741,-0.24428,493.17,-0.23867,0.0821,0.96762,557.45,#167,0.084337,0.99443,-0.063265,603.95,-0.96761,0.066571,-0.24351,269.69,-0.23794,0.081753,0.96783,568.89
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.067896,0.99603,-0.057647,599.14,-0.99077,0.060516,-0.12132,489.62,-0.11735,0.065351,0.99094,533.83,#167,0.067602,0.99606,-0.057403,603.42,-0.99088,0.060303,-0.12054,269.2,-0.1166,0.065028,0.99105,572.88
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.067896,0.99603,-0.057647,603.62,-0.99077,0.060516,-0.12132,483.89,-0.11735,0.065351,0.99094,494.55,#167,0.067602,0.99606,-0.057403,607.9,-0.99088,0.060303,-0.12054,263.47,-0.1166,0.065028,0.99105,533.6
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.052115,0.9974,-0.049809,606,-0.99863,0.052306,0.0025341,477.46,0.0051327,0.049608,0.99876,471.71,#167,0.051826,0.99743,-0.049552,607.4,-0.99864,0.052054,0.0033199,263.48,0.0058908,0.049313,0.99877,537.59
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.052115,0.9974,-0.049809,606.44,-0.99863,0.052306,0.0025341,471.58,0.0051327,0.049608,0.99876,464.81,#167,0.051826,0.99743,-0.049552,607.84,-0.99864,0.052054,0.0033199,257.61,0.0058908,0.049313,0.99877,530.7
> view matrix models
> #166,0.052115,0.9974,-0.049809,591.64,-0.99863,0.052306,0.0025341,475.99,0.0051327,0.049608,0.99876,467.41,#167,0.051826,0.99743,-0.049552,593.04,-0.99864,0.052054,0.0033199,262.01,0.0058908,0.049313,0.99877,533.3
> view matrix models
> #166,0.052115,0.9974,-0.049809,480.51,-0.99863,0.052306,0.0025341,465.38,0.0051327,0.049608,0.99876,468.96,#167,0.051826,0.99743,-0.049552,481.92,-0.99864,0.052054,0.0033199,251.4,0.0058908,0.049313,0.99877,534.84
> ui mousemode right "rotate selected models"
> view matrix models
> #166,0.055469,0.99846,0.00099294,476.71,-0.99843,0.055461,0.0072676,465.08,0.0072013,-0.0013945,0.99997,468.02,#167,0.055219,0.99847,0.001247,482.14,-0.99844,0.055208,0.0080542,251.43,0.0079731,-0.0016898,0.99997,534.76
> ui mousemode right "translate selected models"
> view matrix models
> #166,0.055469,0.99846,0.00099294,469.69,-0.99843,0.055461,0.0072676,464.14,0.0072013,-0.0013945,0.99997,472.55,#167,0.055219,0.99847,0.001247,475.12,-0.99844,0.055208,0.0080542,250.49,0.0079731,-0.0016898,0.99997,539.29
> ui tool show "Fit in Map"
> fitmap #167 inMap #85
Fit map PflA-2.1A-230911.mrc in map Cage_1unit.mrc copy using 1017079 points
correlation = 0.5417, correlation about mean = 0.565, overlap = 3.312e+06
steps = 204, shift = 34, angle = 11.8 degrees
Position of PflA-2.1A-230911.mrc (#167) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999996 -0.00010887 -0.00027013 0.01585857
0.00010891 0.99999999 0.00015874 -0.00135152
0.00027012 -0.00015877 0.99999996 -0.02737440
Axis -0.47860696 -0.81435686 0.32826558
Axis point 82.54185096 0.00000000 31.27493654
Rotation angle (degrees) 0.01900518
Shift along axis -0.01547548
> fitmap #167 inMap #85
Fit map PflA-2.1A-230911.mrc in map Cage_1unit.mrc copy using 1017079 points
correlation = 0.5417, correlation about mean = 0.565, overlap = 3.312e+06
steps = 84, shift = 0.0173, angle = 0.00338 degrees
Position of PflA-2.1A-230911.mrc (#167) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999995 -0.00010652 -0.00032338 0.00382578
0.00010656 0.99999999 0.00013351 -0.00567204
0.00032336 -0.00013355 0.99999995 -0.03853575
Axis -0.36511801 -0.88420860 0.29131425
Axis point 112.31812955 0.00000000 3.22098006
Rotation angle (degrees) 0.02095417
Shift along axis -0.00760761
> fitmap #167 inMap #85
Fit map PflA-2.1A-230911.mrc in map Cage_1unit.mrc copy using 1017079 points
correlation = 0.5417, correlation about mean = 0.565, overlap = 3.312e+06
steps = 60, shift = 0.0236, angle = 0.00665 degrees
Position of PflA-2.1A-230911.mrc (#167) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999998 -0.00011529 -0.00021561 0.01008881
0.00011533 0.99999998 0.00017567 -0.00434354
0.00021559 -0.00017570 0.99999997 -0.01616234
Axis -0.58352967 -0.71610606 0.38299510
Axis point 59.04216323 0.00000000 22.51578417
Rotation angle (degrees) 0.01725031
Shift along axis -0.00896678
> fitmap #167 inMap #85
Fit map PflA-2.1A-230911.mrc in map Cage_1unit.mrc copy using 1017079 points
correlation = 0.5417, correlation about mean = 0.565, overlap = 3.312e+06
steps = 52, shift = 0.0338, angle = 0.00562 degrees
Position of PflA-2.1A-230911.mrc (#167) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999996 -0.00007567 -0.00030410 -0.02265560
0.00007572 0.99999999 0.00016072 -0.01037698
0.00030408 -0.00016074 0.99999995 -0.01471245
Axis -0.45638284 -0.86343559 0.21492715
Axis point 59.77927329 0.00000000 -50.29260887
Rotation angle (degrees) 0.02017868
Shift along axis 0.01613738
> fitmap #167 inMap #85
Fit map PflA-2.1A-230911.mrc in map Cage_1unit.mrc copy using 1017079 points
correlation = 0.5417, correlation about mean = 0.565, overlap = 3.312e+06
steps = 100, shift = 0.034, angle = 0.011 degrees
Position of PflA-2.1A-230911.mrc (#167) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99999999 -0.00011668 -0.00012744 0.00440672
0.00011671 0.99999997 0.00022468 -0.00312193
0.00012742 -0.00022470 0.99999998 0.00277256
Axis -0.79270552 -0.44957508 0.41170403
Axis point 0.00000000 14.07410122 15.79417333
Rotation angle (degrees) 0.01624033
Shift along axis -0.00094822
> hide #!20 models
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 156
shifted from previous position = 31.9
rotated from previous position = 11.8 degrees
atoms outside contour = 22193, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999965 -0.00021192 0.00081957 -214.13923407
0.00021222 0.99999993 -0.00036167 6.49743632
-0.00081950 0.00036185 0.99999962 -65.04338578
Axis 0.39296502 0.89023032 0.23036594
Axis point -53234.82183514 0.00000000 216499.07533842
Rotation angle (degrees) 0.05274593
Shift along axis -93.34879506
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 44
shifted from previous position = 0.00421
rotated from previous position = 0.0068 degrees
atoms outside contour = 22196, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999974 -0.00017172 0.00071983 -214.13560556
0.00017195 0.99999996 -0.00031169 6.50293785
-0.00071978 0.00031181 0.99999971 -65.07129960
Axis 0.38822535 0.89637589 0.21398912
Axis point -63389.00207450 0.00000000 248255.16185224
Rotation angle (degrees) 0.04600926
Shift along axis -91.22834485
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 40
shifted from previous position = 0.0114
rotated from previous position = 0.00366 degrees
atoms outside contour = 22193, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999969 -0.00018817 0.00078068 -214.14030081
0.00018841 0.99999996 -0.00030087 6.50145894
-0.00078063 0.00030102 0.99999967 -65.04610823
Axis 0.35092864 0.91029797 0.21956023
Axis point -59943.31983778 0.00000000 236734.94392225
Rotation angle (degrees) 0.04913568
Shift along axis -83.51123811
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 40
shifted from previous position = 0.00133
rotated from previous position = 0.00218 degrees
atoms outside contour = 22189, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999969 -0.00018285 0.00077937 -214.14030463
0.00018311 0.99999995 -0.00033848 6.50373844
-0.00077932 0.00033862 0.99999966 -65.04462947
Axis 0.38950368 0.89664282 0.21051969
Axis point -58914.75925158 0.00000000 229120.51959629
Rotation angle (degrees) 0.04980052
Shift along axis -91.27008091
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.465, steps = 40
shifted from previous position = 0.0325
rotated from previous position = 0.0105 degrees
atoms outside contour = 22183, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999955 -0.00031534 0.00090367 -214.15633395
0.00031563 0.99999992 -0.00031649 6.46837152
-0.00090357 0.00031678 0.99999956 -64.98449830
Axis 0.31408294 0.89633709 0.31294044
Axis point -43694.67705334 0.00000000 208532.04816941
Rotation angle (degrees) 0.05776126
Shift along axis -81.80128764
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 40
shifted from previous position = 0.0146
rotated from previous position = 0.00999 degrees
atoms outside contour = 22183, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999970 -0.00024954 0.00074304 -214.14364235
0.00024976 0.99999994 -0.00029968 6.48981814
-0.00074297 0.00029987 0.99999970 -65.03460799
Axis 0.35721600 0.88538046 0.29748641
Axis point -51564.31574661 0.00000000 244862.74438063
Rotation angle (degrees) 0.04808235
Shift along axis -90.09649059
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.465, steps = 36
shifted from previous position = 0.0174
rotated from previous position = 0.0134 degrees
atoms outside contour = 22178, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999949 -0.00031916 0.00096638 -214.16083170
0.00031945 0.99999992 -0.00029900 6.46456483
-0.00096629 0.00029931 0.99999951 -64.96889858
Axis 0.28201440 0.91096699 0.30101000
Axis point -44269.82706987 0.00000000 199973.77481586
Rotation angle (degrees) 0.06077809
Shift along axis -74.06372162
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 28
shifted from previous position = 0.0416
rotated from previous position = 0.0189 degrees
atoms outside contour = 22191, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999976 -0.00013787 0.00068978 -214.13535029
0.00013808 0.99999996 -0.00030208 6.51300386
-0.00068975 0.00030217 0.99999973 -65.07388195
Axis 0.39464101 0.90098659 0.18022662
Axis point -70839.05827163 0.00000000 258711.67642454
Rotation angle (degrees) 0.04386369
Shift along axis -90.36650696
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.465, steps = 36
shifted from previous position = 0.037
rotated from previous position = 0.0112 degrees
atoms outside contour = 22178, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999962 -0.00025996 0.00084239 -214.15097122
0.00026021 0.99999994 -0.00028515 6.48594486
-0.00084232 0.00028537 0.99999962 -65.00183267
Axis 0.30786275 0.90908407 0.28068965
Axis point -51191.33575526 0.00000000 225587.42524542
Rotation angle (degrees) 0.05308987
Shift along axis -78.27818007
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 40
shifted from previous position = 0.0307
rotated from previous position = 0.00613 degrees
atoms outside contour = 22191, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999967 -0.00019757 0.00079528 -214.14073203
0.00019786 0.99999994 -0.00035815 6.50140980
-0.00079521 0.00035831 0.99999964 -65.04170869
Axis 0.40055569 0.88920178 0.22107767
Axis point -55661.05307850 0.00000000 221708.39301012
Rotation angle (degrees) 0.05124163
Shift along axis -94.37349262
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 44
shifted from previous position = 0.0104
rotated from previous position = 0.00851 degrees
atoms outside contour = 22193, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999978 -0.00013908 0.00065900 -214.13270498
0.00013931 0.99999995 -0.00034885 6.51507683
-0.00065896 0.00034894 0.99999974 -65.08448402
Axis 0.45996929 0.86876542 0.18350723
Axis point -69696.97650202 0.00000000 251778.58895792
Rotation angle (degrees) 0.04346004
Shift along axis -104.77786758
> fitmap #166 inMap #167
Fit molecule pflA-B-models-202307-02 2.pdb (#166) to map PflA-2.1A-230911.mrc
(#167) using 55466 atoms
average map value = 2.464, steps = 40
shifted from previous position = 0.011
rotated from previous position = 0.00778 degrees
atoms outside contour = 22193, contour level = 0.95601
Position of pflA-B-models-202307-02 2.pdb (#166) relative to
PflA-2.1A-230911.mrc (#167) coordinates:
Matrix rotation and translation
0.99999969 -0.00018555 0.00078132 -214.14035390
0.00018579 0.99999995 -0.00031224 6.50219700
-0.00078127 0.00031239 0.99999966 -65.04516922
Axis 0.36246033 0.90674722 0.21548082
Axis point -59715.05259471 0.00000000 234275.13358865
Rotation angle (degrees) 0.04936864
Shift along axis -85.73752020
> hide #!85 models
> color #167 #b2b2b200 models
> split #166
Split pflA-B-models-202307-02 2.pdb (#166) into 3 models
Chain information for pflA-B-models-202307-02 2.pdb A #166.1
---
Chain | Description
A | No description available
Chain information for pflA-B-models-202307-02 2.pdb B #166.2
---
Chain | Description
B | No description available
Chain information for pflA-B-models-202307-02 2.pdb C #166.3
---
Chain | Description
C | No description available
> hide #!166 models
> show #!166 models
> select add #166.1
25704 atoms, 26196 bonds, 3164 residues, 3 models selected
> select subtract #166.1
2 models selected
> select add #166.1
25704 atoms, 26196 bonds, 3164 residues, 3 models selected
> select add #167
25704 atoms, 26196 bonds, 3164 residues, 4 models selected
> select subtract #167
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 4 models selected
> select subtract #166
Nothing selected
> select add #166.1
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> select add #166.2
49528 atoms, 50564 bonds, 6090 residues, 2 models selected
> select subtract #166.2
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> select add #166.3
31642 atoms, 32270 bonds, 3893 residues, 2 models selected
> select subtract #166.3
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> select add #166.3
31642 atoms, 32270 bonds, 3893 residues, 2 models selected
> select subtract #166.3
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> select add #166.3
31642 atoms, 32270 bonds, 3893 residues, 2 models selected
> select subtract #166.3
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> select add #166.3
31642 atoms, 32270 bonds, 3893 residues, 2 models selected
> select subtract #166.3
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> split #166.1
Did not split pflA-B-models-202307-02 2.pdb A, has only one piece
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 4 models selected
> select subtract #166
Nothing selected
> select add #166.1
25704 atoms, 26196 bonds, 3164 residues, 1 model selected
> select subtract #166.1
Nothing selected
> split #166.1
Did not split pflA-B-models-202307-02 2.pdb A, has only one piece
> hide #!167 models
> split #166.2
Did not split pflA-B-models-202307-02 2.pdb B, has only one piece
> hide #166.2 models
> show #166.2 models
> select add #166.2
23824 atoms, 24368 bonds, 2926 residues, 1 model selected
Alignment identifier is 166.2/B
[Repeated 1 time(s)]
> select #166.2/B:116-117
56 atoms, 52 bonds, 8 residues, 1 model selected
> select #166.2/B:116-117
56 atoms, 52 bonds, 8 residues, 1 model selected
> select #166.2/B:117
20 atoms, 16 bonds, 4 residues, 1 model selected
> select #166.2/B:117-163
1460 atoms, 1464 bonds, 188 residues, 1 model selected
> select #166.2/B:701-703
100 atoms, 96 bonds, 12 residues, 1 model selected
> select #166.2/B:111-166,701-844
6372 atoms, 6464 bonds, 790 residues, 1 model selected
> select #166.2/B:843
32 atoms, 28 bonds, 4 residues, 1 model selected
> select #166.2/B:701-843
4648 atoms, 4728 bonds, 572 residues, 1 model selected
> select #166.2/B:124-125
64 atoms, 60 bonds, 8 residues, 1 model selected
> select #166.2/B:124-128
156 atoms, 156 bonds, 20 residues, 1 model selected
> select #166.2/B:170-171
44 atoms, 40 bonds, 8 residues, 1 model selected
> select #166.2/B:170-273
3360 atoms, 3452 bonds, 416 residues, 1 model selected
> select #166.2/B:844
40 atoms, 36 bonds, 4 residues, 1 model selected
> select #166.2/B:439-844
13288 atoms, 13592 bonds, 1624 residues, 1 model selected
> select #166.2/B:438
36 atoms, 32 bonds, 4 residues, 1 model selected
> select #166.2/B:260-438
5852 atoms, 5996 bonds, 716 residues, 1 model selected
> select #166.2/B:259
20 atoms, 16 bonds, 4 residues, 1 model selected
> select #166.2/B:111-259,768-844
7212 atoms, 7348 bonds, 894 residues, 1 model selected
> select #166.2/B:766
32 atoms, 28 bonds, 4 residues, 1 model selected
> select #166.2/B:628-766
4556 atoms, 4644 bonds, 556 residues, 1 model selected
> select clear
> select #166.2/B:116-162
1464 atoms, 1468 bonds, 188 residues, 1 model selected
> select #166.2/B:111-115,116-844
23824 atoms, 24368 bonds, 2926 residues, 1 model selected
> select #166.2/B:844
40 atoms, 36 bonds, 4 residues, 1 model selected
> select #166.2/B:574-844
8944 atoms, 9140 bonds, 1084 residues, 1 model selected
> select clear
> select #166.2/B:844
40 atoms, 36 bonds, 4 residues, 1 model selected
> select #166.2/B:126-844
23444 atoms, 23988 bonds, 2876 residues, 1 model selected
> select clear
Drag select of 16 residues
> select add #166.2/B:128
159 atoms, 28 bonds, 20 residues, 2 models selected
> select #166.2/B:844
40 atoms, 36 bonds, 4 residues, 1 model selected
> select #166.2/B:799-844
1508 atoms, 1536 bonds, 184 residues, 1 model selected
> select #166.2/B:116
36 atoms, 32 bonds, 4 residues, 1 model selected
> select #166.2/B:116-820
22924 atoms, 23456 bonds, 2820 residues, 1 model selected
> select clear
[Repeated 1 time(s)]Alignment identifier is 1
Alignment identifier is 2
Alignment identifier is 3
Alignment identifier is 4
Alignment identifier is 5
Alignment identifier is 6
Alignment identifier is 7
Alignment identifier is 8
Alignment identifier is 9
Alignment identifier is 10
Alignment identifier is 11
Alignment identifier is 12
Alignment identifier is 13
Alignment identifier is 14
Alignment identifier is 15
Alignment identifier is 16
Alignment identifier is 17
Alignment identifier is 18
Alignment identifier is 19
Alignment identifier is 52/CE
Alignment identifier is 20
Alignment identifier is 21
Alignment identifier is 22
Alignment identifier is 23
Alignment identifier is 24
Alignment identifier is 25
Alignment identifier is 26
Alignment identifier is 27
Alignment identifier is 28
Alignment identifier is 29
Alignment identifier is 30
Alignment identifier is 31
Alignment identifier is 64/A
Alignment identifier is 32
Alignment identifier is 33
Alignment identifier is 34
Alignment identifier is 35
Alignment identifier is 36
Alignment identifier is 37
Alignment identifier is 38
Alignment identifier is 39
Alignment identifier is 40
Alignment identifier is 41
Alignment identifier is 42
Alignment identifier is 166.1/A
Alignment identifier is 166.2/B
Alignment identifier is 166.3/C
Drag select of 13 residues
> select add #166.2/B:831
150 atoms, 32 bonds, 17 residues, 1 model selected
> select add #166.2/B:830
182 atoms, 60 bonds, 21 residues, 1 model selected
> select add #166.2/B:829
214 atoms, 88 bonds, 25 residues, 1 model selected
> select add #166.2/B:828
246 atoms, 116 bonds, 29 residues, 1 model selected
> select add #166.2/B:827
266 atoms, 132 bonds, 33 residues, 1 model selected
> select add #166.2/B:826
298 atoms, 160 bonds, 37 residues, 1 model selected
> select add #166.2/B:825
330 atoms, 188 bonds, 41 residues, 1 model selected
> select subtract #166.2/B:825
298 atoms, 160 bonds, 37 residues, 1 model selected
> select add #166.2/B:825
330 atoms, 188 bonds, 41 residues, 1 model selected
> select add #166.2/B:824
366 atoms, 220 bonds, 45 residues, 1 model selected
> select add #166.2/B:823
410 atoms, 264 bonds, 49 residues, 1 model selected
> select add #166.2/B:822
442 atoms, 292 bonds, 53 residues, 1 model selected
> select add #166.2/B:821
486 atoms, 336 bonds, 57 residues, 1 model selected
> select add #166.2/B:820
534 atoms, 384 bonds, 61 residues, 1 model selected
> select add #166.2/B:819
562 atoms, 412 bonds, 65 residues, 1 model selected
> select add #166.2/B:818
586 atoms, 432 bonds, 69 residues, 1 model selected
> select add #166.2/B:817
610 atoms, 452 bonds, 73 residues, 1 model selected
> select add #166.2/B:816
654 atoms, 496 bonds, 77 residues, 1 model selected
> select add #166.2/B:815
686 atoms, 524 bonds, 81 residues, 1 model selected
> select add #166.2/B:814
710 atoms, 544 bonds, 85 residues, 1 model selected
> select add #166.2/B:813
738 atoms, 568 bonds, 89 residues, 1 model selected
> select add #166.2/B:812
774 atoms, 600 bonds, 93 residues, 1 model selected
> select add #166.2/B:811
806 atoms, 628 bonds, 97 residues, 1 model selected
> select add #166.2/B:810
826 atoms, 644 bonds, 101 residues, 1 model selected
> select add #166.2/B:809
858 atoms, 672 bonds, 105 residues, 1 model selected
> select add #166.2/B:808
902 atoms, 716 bonds, 109 residues, 1 model selected
> select add #166.2/B:807
942 atoms, 756 bonds, 113 residues, 1 model selected
> select add #166.2/B:806
974 atoms, 784 bonds, 117 residues, 1 model selected
> select add #166.2/B:805
1006 atoms, 812 bonds, 121 residues, 1 model selected
> select add #166.2/B:804
1026 atoms, 828 bonds, 125 residues, 1 model selected
> select add #166.2/B:803
1050 atoms, 848 bonds, 129 residues, 1 model selected
> select add #166.2/B:802
1086 atoms, 880 bonds, 133 residues, 1 model selected
> select subtract #166.2/B:802
1050 atoms, 848 bonds, 129 residues, 1 model selected
> select add #166.2/B:802
1086 atoms, 880 bonds, 133 residues, 1 model selected
> select add #166.2/B:801
1118 atoms, 908 bonds, 137 residues, 1 model selected
> select add #166.2/B:800
1150 atoms, 936 bonds, 141 residues, 1 model selected
> select add #166.2/B:799
1166 atoms, 948 bonds, 145 residues, 1 model selected
> select add #166.2/B:798
1202 atoms, 980 bonds, 149 residues, 1 model selected
> select add #166.2/B:797
1246 atoms, 1020 bonds, 153 residues, 1 model selected
> select subtract #166.2/B:797
1202 atoms, 980 bonds, 149 residues, 1 model selected
> select add #166.2/B:797
1246 atoms, 1020 bonds, 153 residues, 1 model selected
> select add #166.2/B:796
1282 atoms, 1052 bonds, 157 residues, 1 model selected
> select add #166.2/B:795
1330 atoms, 1100 bonds, 161 residues, 1 model selected
> select add #166.2/B:794
1362 atoms, 1128 bonds, 165 residues, 1 model selected
> select add #166.2/B:793
1394 atoms, 1156 bonds, 169 residues, 1 model selected
> select add #166.2/B:792
1410 atoms, 1168 bonds, 173 residues, 1 model selected
> select add #166.2/B:791
1442 atoms, 1196 bonds, 177 residues, 1 model selected
> select add #166.2/B:790
1462 atoms, 1212 bonds, 181 residues, 1 model selected
> select add #166.2/B:789
1510 atoms, 1260 bonds, 185 residues, 1 model selected
> select add #166.2/B:788
1554 atoms, 1300 bonds, 189 residues, 1 model selected
> select add #166.2/B:787
1586 atoms, 1328 bonds, 193 residues, 1 model selected
> select add #166.2/B:786
1618 atoms, 1356 bonds, 197 residues, 1 model selected
> select add #166.2/B:785
1654 atoms, 1388 bonds, 201 residues, 1 model selected
> select add #166.2/B:784
1686 atoms, 1416 bonds, 205 residues, 1 model selected
> select add #166.2/B:783
1718 atoms, 1444 bonds, 209 residues, 1 model selected
> select add #166.2/B:782
1746 atoms, 1472 bonds, 213 residues, 1 model selected
> select add #166.2/B:781
1778 atoms, 1500 bonds, 217 residues, 1 model selected
> select add #166.2/B:780
1810 atoms, 1528 bonds, 221 residues, 1 model selected
> select add #166.2/B:779
1842 atoms, 1556 bonds, 225 residues, 1 model selected
> select add #166.2/B:777
1858 atoms, 1568 bonds, 229 residues, 1 model selected
> select add #166.2/B:778
1894 atoms, 1600 bonds, 233 residues, 1 model selected
> select add #166.2/B:776
1926 atoms, 1628 bonds, 237 residues, 1 model selected
> select add #166.2/B:775
1962 atoms, 1660 bonds, 241 residues, 1 model selected
> select add #166.2/B:774
1994 atoms, 1688 bonds, 245 residues, 1 model selected
> select add #166.2/B:773
2050 atoms, 1748 bonds, 249 residues, 1 model selected
> select add #166.2/B:772
2082 atoms, 1776 bonds, 253 residues, 1 model selected
> select subtract #166.2/B:772
2050 atoms, 1748 bonds, 249 residues, 1 model selected
> select add #166.2/B:772
2082 atoms, 1776 bonds, 253 residues, 1 model selected
> select add #166.2/B:771
2102 atoms, 1792 bonds, 257 residues, 1 model selected
> select add #166.2/B:770
2122 atoms, 1808 bonds, 261 residues, 1 model selected
> select add #166.2/B:769
2154 atoms, 1836 bonds, 265 residues, 1 model selected
> select add #166.2/B:768
2186 atoms, 1864 bonds, 269 residues, 1 model selected
> select subtract #166.2/B:768
2154 atoms, 1836 bonds, 265 residues, 1 model selected
> select add #166.2/B:768
2186 atoms, 1864 bonds, 269 residues, 1 model selected
> select add #166.2/B:767
2234 atoms, 1912 bonds, 273 residues, 1 model selected
> select add #166.2/B:766
2266 atoms, 1940 bonds, 277 residues, 1 model selected
> select add #166.2/B:765
2290 atoms, 1960 bonds, 281 residues, 1 model selected
> select add #166.2/B:764
2326 atoms, 1992 bonds, 285 residues, 1 model selected
> select add #166.2/B:763
2346 atoms, 2008 bonds, 289 residues, 1 model selected
> select add #166.2/B:762
2378 atoms, 2036 bonds, 293 residues, 1 model selected
> select add #166.2/B:761
2426 atoms, 2084 bonds, 297 residues, 1 model selected
> select add #166.2/B:760
2454 atoms, 2108 bonds, 301 residues, 1 model selected
> select add #166.2/B:759
2486 atoms, 2136 bonds, 305 residues, 1 model selected
> select subtract #166.2/B:759
2454 atoms, 2108 bonds, 301 residues, 1 model selected
> select add #166.2/B:758
2470 atoms, 2120 bonds, 305 residues, 1 model selected
> select add #166.2/B:759
2502 atoms, 2148 bonds, 309 residues, 1 model selected
> select add #166.2/B:757
2522 atoms, 2164 bonds, 313 residues, 1 model selected
> select add #166.2/B:756
2554 atoms, 2192 bonds, 317 residues, 1 model selected
> select add #166.2/B:755
2586 atoms, 2220 bonds, 321 residues, 1 model selected
> select add #166.2/B:754
2622 atoms, 2252 bonds, 325 residues, 1 model selected
> select add #166.2/B:753
2654 atoms, 2280 bonds, 329 residues, 1 model selected
> select add #166.2/B:752
2698 atoms, 2320 bonds, 333 residues, 1 model selected
> select subtract #166.2/B:752
2654 atoms, 2280 bonds, 329 residues, 1 model selected
> select add #166.2/B:752
2698 atoms, 2320 bonds, 333 residues, 1 model selected
> select add #166.2/B:751
2726 atoms, 2344 bonds, 337 residues, 1 model selected
> select add #166.2/B:750
2762 atoms, 2376 bonds, 341 residues, 1 model selected
> select add #166.2/B:749
2794 atoms, 2404 bonds, 345 residues, 1 model selected
> select add #166.2/B:748
2826 atoms, 2432 bonds, 349 residues, 1 model selected
> select add #166.2/B:747
2862 atoms, 2464 bonds, 353 residues, 1 model selected
> select add #166.2/B:746
2894 atoms, 2492 bonds, 357 residues, 1 model selected
> select add #166.2/B:745
2926 atoms, 2520 bonds, 361 residues, 1 model selected
> select add #166.2/B:744
2950 atoms, 2540 bonds, 365 residues, 1 model selected
> select subtract #166.2/B:744
2926 atoms, 2520 bonds, 361 residues, 1 model selected
> select add #166.2/B:743
2958 atoms, 2548 bonds, 365 residues, 1 model selected
> select add #166.2/B:744
2982 atoms, 2568 bonds, 369 residues, 1 model selected
> select add #166.2/B:742
3014 atoms, 2596 bonds, 373 residues, 1 model selected
> select add #166.2/B:741
3046 atoms, 2624 bonds, 377 residues, 1 model selected
> select add #166.2/B:740
3082 atoms, 2656 bonds, 381 residues, 1 model selected
> select add #166.2/B:739
3130 atoms, 2704 bonds, 385 residues, 1 model selected
> select add #166.2/B:738
3162 atoms, 2732 bonds, 389 residues, 1 model selected
> select add #166.2/B:737
3182 atoms, 2748 bonds, 393 residues, 1 model selected
> select add #166.2/B:736
3206 atoms, 2768 bonds, 397 residues, 1 model selected
> select add #166.2/B:735
3226 atoms, 2784 bonds, 401 residues, 1 model selected
> select add #166.2/B:734
3262 atoms, 2816 bonds, 405 residues, 1 model selected
> select add #166.2/B:733
3298 atoms, 2848 bonds, 409 residues, 1 model selected
> select add #166.2/B:732
3346 atoms, 2896 bonds, 413 residues, 1 model selected
> select add #166.2/B:731
3382 atoms, 2928 bonds, 417 residues, 1 model selected
> select add #166.2/B:730
3398 atoms, 2940 bonds, 421 residues, 1 model selected
> select add #166.2/B:729
3434 atoms, 2972 bonds, 425 residues, 1 model selected
> select add #166.2/B:728
3478 atoms, 3016 bonds, 429 residues, 1 model selected
> select subtract #166.2/B:728
3434 atoms, 2972 bonds, 425 residues, 1 model selected
> select add #166.2/B:728
3478 atoms, 3016 bonds, 429 residues, 1 model selected
> select add #166.2/B:727
3510 atoms, 3044 bonds, 433 residues, 1 model selected
> select add #166.2/B:726
3534 atoms, 3064 bonds, 437 residues, 1 model selected
> select add #166.2/B:725
3562 atoms, 3088 bonds, 441 residues, 1 model selected
> select add #166.2/B:724
3594 atoms, 3116 bonds, 445 residues, 1 model selected
> select add #166.2/B:722
3626 atoms, 3144 bonds, 449 residues, 1 model selected
> select add #166.2/B:723
3646 atoms, 3160 bonds, 453 residues, 1 model selected
> select add #166.2/B:721
3678 atoms, 3188 bonds, 457 residues, 1 model selected
> select add #166.2/B:720
3714 atoms, 3220 bonds, 461 residues, 1 model selected
> select add #166.2/B:719
3746 atoms, 3248 bonds, 465 residues, 1 model selected
> select add #166.2/B:718
3802 atoms, 3308 bonds, 469 residues, 1 model selected
> select subtract #166.2/B:718
3746 atoms, 3248 bonds, 465 residues, 1 model selected
> select add #166.2/B:717
3778 atoms, 3276 bonds, 469 residues, 1 model selected
> select add #166.2/B:718
3834 atoms, 3336 bonds, 473 residues, 1 model selected
> select add #166.2/B:716
3866 atoms, 3364 bonds, 477 residues, 1 model selected
> select add #166.2/B:715
3894 atoms, 3392 bonds, 481 residues, 1 model selected
> select add #166.2/B:714
3914 atoms, 3408 bonds, 485 residues, 1 model selected
> select add #166.2/B:713
3950 atoms, 3440 bonds, 489 residues, 1 model selected
> select subtract #166.2/B:713
3914 atoms, 3408 bonds, 485 residues, 1 model selected
> select add #166.2/B:712
3958 atoms, 3448 bonds, 489 residues, 1 model selected
> select add #166.2/B:713
3994 atoms, 3480 bonds, 493 residues, 1 model selected
> select add #166.2/B:711
4030 atoms, 3512 bonds, 497 residues, 1 model selected
> select add #166.2/B:710
4066 atoms, 3544 bonds, 501 residues, 1 model selected
> select add #166.2/B:709
4098 atoms, 3572 bonds, 505 residues, 1 model selected
> select add #166.2/B:708
4122 atoms, 3592 bonds, 509 residues, 1 model selected
> select add #166.2/B:707
4142 atoms, 3608 bonds, 513 residues, 1 model selected
> select add #166.2/B:706
4174 atoms, 3636 bonds, 517 residues, 1 model selected
> select add #166.2/B:705
4210 atoms, 3668 bonds, 521 residues, 1 model selected
> select add #166.2/B:704
4246 atoms, 3700 bonds, 525 residues, 1 model selected
> select subtract #166.2/B:704
4210 atoms, 3668 bonds, 521 residues, 1 model selected
> select add #166.2/B:704
4246 atoms, 3700 bonds, 525 residues, 1 model selected
> select add #166.2/B:703
4282 atoms, 3732 bonds, 529 residues, 1 model selected
> select add #166.2/B:702
4314 atoms, 3760 bonds, 533 residues, 1 model selected
> select add #166.2/B:701
4346 atoms, 3788 bonds, 537 residues, 1 model selected
> select add #166.2/B:700
4390 atoms, 3828 bonds, 541 residues, 1 model selected
> select add #166.2/B:699
4426 atoms, 3860 bonds, 545 residues, 1 model selected
> select add #166.2/B:698
4462 atoms, 3892 bonds, 549 residues, 1 model selected
> select add #166.2/B:697
4502 atoms, 3932 bonds, 553 residues, 1 model selected
> select subtract #166.2/B:697
4462 atoms, 3892 bonds, 549 residues, 1 model selected
> select add #166.2/B:697
4502 atoms, 3932 bonds, 553 residues, 1 model selected
> select add #166.2/B:696
4534 atoms, 3960 bonds, 557 residues, 1 model selected
> select add #166.2/B:695
4566 atoms, 3988 bonds, 561 residues, 1 model selected
> select subtract #166.2/B:695
4534 atoms, 3960 bonds, 557 residues, 1 model selected
> select add #166.2/B:695
4566 atoms, 3988 bonds, 561 residues, 1 model selected
> select add #166.2/B:694
4598 atoms, 4016 bonds, 565 residues, 1 model selected
> select add #166.2/B:693
4630 atoms, 4044 bonds, 569 residues, 1 model selected
> select add #166.2/B:692
4658 atoms, 4068 bonds, 573 residues, 1 model selected
> select add #166.2/B:691
4690 atoms, 4096 bonds, 577 residues, 1 model selected
> select subtract #166.2/B:691
4658 atoms, 4068 bonds, 573 residues, 1 model selected
> select add #166.2/B:691
4690 atoms, 4096 bonds, 577 residues, 1 model selected
> select add #166.2/B:690
4734 atoms, 4140 bonds, 581 residues, 1 model selected
> select add #166.2/B:689
4750 atoms, 4152 bonds, 585 residues, 1 model selected
> select add #166.2/B:688
4782 atoms, 4180 bonds, 589 residues, 1 model selected
> select subtract #166.2/B:688
4750 atoms, 4152 bonds, 585 residues, 1 model selected
> select add #166.2/B:688
4782 atoms, 4180 bonds, 589 residues, 1 model selected
> select add #166.2/B:687
4830 atoms, 4228 bonds, 593 residues, 1 model selected
> select add #166.2/B:686
4858 atoms, 4252 bonds, 597 residues, 1 model selected
> select add #166.2/B:685
4906 atoms, 4300 bonds, 601 residues, 1 model selected
> select add #166.2/B:684
4950 atoms, 4344 bonds, 605 residues, 1 model selected
> select add #166.2/B:683
4990 atoms, 4384 bonds, 609 residues, 1 model selected
> select add #166.2/B:682
5034 atoms, 4424 bonds, 613 residues, 1 model selected
> select add #166.2/B:681
5050 atoms, 4436 bonds, 617 residues, 1 model selected
> select add #166.2/B:680
5082 atoms, 4464 bonds, 621 residues, 1 model selected
> select add #166.2/B:679
5114 atoms, 4492 bonds, 625 residues, 1 model selected
> select add #166.2/B:678
5142 atoms, 4520 bonds, 629 residues, 1 model selected
> select add #166.2/B:677
5158 atoms, 4532 bonds, 633 residues, 1 model selected
> select add #166.2/B:676
5194 atoms, 4564 bonds, 637 residues, 1 model selected
> select add #166.2/B:675
5226 atoms, 4592 bonds, 641 residues, 1 model selected
> select add #166.2/B:674
5254 atoms, 4616 bonds, 645 residues, 1 model selected
> select add #166.2/B:673
5290 atoms, 4648 bonds, 649 residues, 1 model selected
> select add #166.2/B:672
5322 atoms, 4676 bonds, 653 residues, 1 model selected
> select add #166.2/B:671
5378 atoms, 4736 bonds, 657 residues, 1 model selected
> select add #166.2/B:670
5402 atoms, 4756 bonds, 661 residues, 1 model selected
> select add #166.2/B:669
5434 atoms, 4784 bonds, 665 residues, 1 model selected
> select add #166.2/B:668
5470 atoms, 4816 bonds, 669 residues, 1 model selected
> select add #166.2/B:667
5514 atoms, 4856 bonds, 673 residues, 1 model selected
> select add #166.2/B:666
5538 atoms, 4876 bonds, 677 residues, 1 model selected
> select add #166.2/B:665
5570 atoms, 4904 bonds, 681 residues, 1 model selected
> select add #166.2/B:664
5602 atoms, 4932 bonds, 685 residues, 1 model selected
> select add #166.2/B:663
5634 atoms, 4960 bonds, 689 residues, 1 model selected
> select add #166.2/B:662
5662 atoms, 4984 bonds, 693 residues, 1 model selected
> select add #166.2/B:661
5710 atoms, 5032 bonds, 697 residues, 1 model selected
> select add #166.2/B:660
5742 atoms, 5060 bonds, 701 residues, 1 model selected
> select add #166.2/B:659
5766 atoms, 5080 bonds, 705 residues, 1 model selected
> select add #166.2/B:658
5798 atoms, 5108 bonds, 709 residues, 1 model selected
> select subtract #166.2/B:658
5766 atoms, 5080 bonds, 705 residues, 1 model selected
> select add #166.2/B:658
5798 atoms, 5108 bonds, 709 residues, 1 model selected
> select add #166.2/B:657
5826 atoms, 5132 bonds, 713 residues, 1 model selected
> select add #166.2/B:656
5866 atoms, 5172 bonds, 717 residues, 1 model selected
> select add #166.2/B:655
5910 atoms, 5212 bonds, 721 residues, 1 model selected
> select add #166.2/B:654
5942 atoms, 5240 bonds, 725 residues, 1 model selected
> select add #166.2/B:653
5966 atoms, 5260 bonds, 729 residues, 1 model selected
> select add #166.2/B:652
5986 atoms, 5276 bonds, 733 residues, 1 model selected
> select add #166.2/B:651
6018 atoms, 5304 bonds, 737 residues, 1 model selected
> select add #166.2/B:650
6066 atoms, 5352 bonds, 741 residues, 1 model selected
> select add #166.2/B:649
6114 atoms, 5400 bonds, 745 residues, 1 model selected
> select add #166.2/B:648
6138 atoms, 5420 bonds, 749 residues, 1 model selected
> select add #166.2/B:647
6166 atoms, 5444 bonds, 753 residues, 1 model selected
> select add #166.2/B:646
6198 atoms, 5472 bonds, 757 residues, 1 model selected
> select add #166.2/B:645
6234 atoms, 5504 bonds, 761 residues, 1 model selected
> select add #166.2/B:644
6282 atoms, 5552 bonds, 765 residues, 1 model selected
> select add #166.2/B:643
6326 atoms, 5596 bonds, 769 residues, 1 model selected
> select add #166.2/B:642
6358 atoms, 5624 bonds, 773 residues, 1 model selected
> select add #166.2/B:641
6390 atoms, 5652 bonds, 777 residues, 1 model selected
> select add #166.2/B:640
6414 atoms, 5672 bonds, 781 residues, 1 model selected
> select add #166.2/B:639
6446 atoms, 5700 bonds, 785 residues, 1 model selected
> select add #166.2/B:638
6478 atoms, 5728 bonds, 789 residues, 1 model selected
> select add #166.2/B:637
6510 atoms, 5756 bonds, 793 residues, 1 model selected
> select add #166.2/B:636
6546 atoms, 5788 bonds, 797 residues, 1 model selected
> select add #166.2/B:635
6574 atoms, 5816 bonds, 801 residues, 1 model selected
> select add #166.2/B:634
6606 atoms, 5844 bonds, 805 residues, 1 model selected
> select add #166.2/B:633
6638 atoms, 5872 bonds, 809 residues, 1 model selected
> select add #166.2/B:632
6674 atoms, 5904 bonds, 813 residues, 1 model selected
> select subtract #166.2/B:632
6638 atoms, 5872 bonds, 809 residues, 1 model selected
> select add #166.2/B:631
6674 atoms, 5904 bonds, 813 residues, 1 model selected
> select add #166.2/B:632
6710 atoms, 5936 bonds, 817 residues, 1 model selected
> select add #166.2/B:630
6742 atoms, 5964 bonds, 821 residues, 1 model selected
> select add #166.2/B:629
6774 atoms, 5992 bonds, 825 residues, 1 model selected
> select add #166.2/B:628
6790 atoms, 6004 bonds, 829 residues, 1 model selected
> select add #166.2/B:627
6834 atoms, 6048 bonds, 833 residues, 1 model selected
> select add #166.2/B:626
6858 atoms, 6068 bonds, 837 residues, 1 model selected
> select add #166.2/B:625
6894 atoms, 6100 bonds, 841 residues, 1 model selected
> select subtract #166.2/B:625
6858 atoms, 6068 bonds, 837 residues, 1 model selected
> select add #166.2/B:624
6886 atoms, 6092 bonds, 841 residues, 1 model selected
> select add #166.2/B:625
6922 atoms, 6124 bonds, 845 residues, 1 model selected
> select add #166.2/B:623
6954 atoms, 6152 bonds, 849 residues, 1 model selected
> select add #166.2/B:622
6986 atoms, 6180 bonds, 853 residues, 1 model selected
> select subtract #166.2/B:622
6954 atoms, 6152 bonds, 849 residues, 1 model selected
> select add #166.2/B:622
6986 atoms, 6180 bonds, 853 residues, 1 model selected
> select add #166.2/B:621
7022 atoms, 6212 bonds, 857 residues, 1 model selected
> select add #166.2/B:620
7058 atoms, 6244 bonds, 861 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:619
7090 atoms, 6272 bonds, 865 residues, 1 model selected
> select add #166.2/B:618
7126 atoms, 6304 bonds, 869 residues, 1 model selected
> select add #166.2/B:617
7150 atoms, 6324 bonds, 873 residues, 1 model selected
> select add #166.2/B:616
7186 atoms, 6356 bonds, 877 residues, 1 model selected
> select add #166.2/B:615
7222 atoms, 6388 bonds, 881 residues, 1 model selected
> select add #166.2/B:614
7242 atoms, 6404 bonds, 885 residues, 1 model selected
> select add #166.2/B:613
7286 atoms, 6448 bonds, 889 residues, 1 model selected
> select add #166.2/B:612
7314 atoms, 6472 bonds, 893 residues, 1 model selected
> select add #166.2/B:611
7334 atoms, 6488 bonds, 897 residues, 1 model selected
> select add #166.2/B:610
7370 atoms, 6520 bonds, 901 residues, 1 model selected
> select add #166.2/B:609
7402 atoms, 6548 bonds, 905 residues, 1 model selected
> select add #166.2/B:608
7422 atoms, 6564 bonds, 909 residues, 1 model selected
> select add #166.2/B:607
7470 atoms, 6612 bonds, 913 residues, 1 model selected
> select add #166.2/B:606
7518 atoms, 6660 bonds, 917 residues, 1 model selected
> select add #166.2/B:605
7562 atoms, 6704 bonds, 921 residues, 1 model selected
> select add #166.2/B:604
7590 atoms, 6732 bonds, 925 residues, 1 model selected
> select add #166.2/B:603
7622 atoms, 6760 bonds, 929 residues, 1 model selected
> select add #166.2/B:602
7658 atoms, 6792 bonds, 933 residues, 1 model selected
> select add #166.2/B:601
7694 atoms, 6824 bonds, 937 residues, 1 model selected
> select add #166.2/B:600
7722 atoms, 6852 bonds, 941 residues, 1 model selected
> select subtract #166.2/B:600
7694 atoms, 6824 bonds, 937 residues, 1 model selected
> select add #166.2/B:600
7722 atoms, 6852 bonds, 941 residues, 1 model selected
> select add #166.2/B:599
7742 atoms, 6868 bonds, 945 residues, 1 model selected
> select add #166.2/B:598
7774 atoms, 6896 bonds, 949 residues, 1 model selected
> select subtract #166.2/B:598
7742 atoms, 6868 bonds, 945 residues, 1 model selected
> select add #166.2/B:598
7774 atoms, 6896 bonds, 949 residues, 1 model selected
> select add #166.2/B:597
7810 atoms, 6928 bonds, 953 residues, 1 model selected
> select add #166.2/B:596
7842 atoms, 6956 bonds, 957 residues, 1 model selected
> select add #166.2/B:595
7898 atoms, 7016 bonds, 961 residues, 1 model selected
> select add #166.2/B:594
7930 atoms, 7044 bonds, 965 residues, 1 model selected
> select add #166.2/B:593
7962 atoms, 7072 bonds, 969 residues, 1 model selected
> select add #166.2/B:592
7994 atoms, 7100 bonds, 973 residues, 1 model selected
> select add #166.2/B:591
8050 atoms, 7160 bonds, 977 residues, 1 model selected
> select add #166.2/B:590
8082 atoms, 7188 bonds, 981 residues, 1 model selected
> select add #166.2/B:589
8110 atoms, 7212 bonds, 985 residues, 1 model selected
> select add #166.2/B:588
8154 atoms, 7252 bonds, 989 residues, 1 model selected
> select add #166.2/B:587
8202 atoms, 7300 bonds, 993 residues, 1 model selected
> select add #166.2/B:586
8234 atoms, 7328 bonds, 997 residues, 1 model selected
> select add #166.2/B:585
8266 atoms, 7356 bonds, 1001 residues, 1 model selected
> select add #166.2/B:584
8314 atoms, 7404 bonds, 1005 residues, 1 model selected
> select add #166.2/B:583
8334 atoms, 7420 bonds, 1009 residues, 1 model selected
> select add #166.2/B:582
8366 atoms, 7448 bonds, 1013 residues, 1 model selected
> select add #166.2/B:581
8398 atoms, 7476 bonds, 1017 residues, 1 model selected
> select add #166.2/B:580
8422 atoms, 7496 bonds, 1021 residues, 1 model selected
> select add #166.2/B:579
8446 atoms, 7516 bonds, 1025 residues, 1 model selected
> select add #166.2/B:578
8478 atoms, 7544 bonds, 1029 residues, 1 model selected
> select add #166.2/B:576
8498 atoms, 7560 bonds, 1033 residues, 1 model selected
> select add #166.2/B:577
8530 atoms, 7588 bonds, 1037 residues, 1 model selected
> select add #166.2/B:575
8566 atoms, 7620 bonds, 1041 residues, 1 model selected
> select subtract #166.2/B:575
8530 atoms, 7588 bonds, 1037 residues, 1 model selected
> select add #166.2/B:575
8566 atoms, 7620 bonds, 1041 residues, 1 model selected
> select add #166.2/B:574
8602 atoms, 7652 bonds, 1045 residues, 1 model selected
> select add #166.2/B:573
8630 atoms, 7676 bonds, 1049 residues, 1 model selected
> select add #166.2/B:572
8658 atoms, 7704 bonds, 1053 residues, 1 model selected
> select add #166.2/B:571
8682 atoms, 7724 bonds, 1057 residues, 1 model selected
> select add #166.2/B:570
8706 atoms, 7744 bonds, 1061 residues, 1 model selected
> select add #166.2/B:569
8750 atoms, 7788 bonds, 1065 residues, 1 model selected
> select add #166.2/B:568
8782 atoms, 7816 bonds, 1069 residues, 1 model selected
> select add #166.2/B:567
8822 atoms, 7856 bonds, 1073 residues, 1 model selected
> select add #166.2/B:566
8846 atoms, 7876 bonds, 1077 residues, 1 model selected
> select add #166.2/B:565
8894 atoms, 7924 bonds, 1081 residues, 1 model selected
> select add #166.2/B:564
8938 atoms, 7968 bonds, 1085 residues, 1 model selected
> select add #166.2/B:563
8970 atoms, 7996 bonds, 1089 residues, 1 model selected
> select add #166.2/B:562
9006 atoms, 8028 bonds, 1093 residues, 1 model selected
> select add #166.2/B:561
9034 atoms, 8052 bonds, 1097 residues, 1 model selected
> select subtract #166.2/B:561
9006 atoms, 8028 bonds, 1093 residues, 1 model selected
> select add #166.2/B:560
9038 atoms, 8056 bonds, 1097 residues, 1 model selected
> select add #166.2/B:561
9066 atoms, 8080 bonds, 1101 residues, 1 model selected
> select add #166.2/B:559
9102 atoms, 8112 bonds, 1105 residues, 1 model selected
> select add #166.2/B:558
9146 atoms, 8152 bonds, 1109 residues, 1 model selected
> select add #166.2/B:557
9178 atoms, 8180 bonds, 1113 residues, 1 model selected
> select add #166.2/B:556
9222 atoms, 8224 bonds, 1117 residues, 1 model selected
> select add #166.2/B:555
9258 atoms, 8256 bonds, 1121 residues, 1 model selected
> select add #166.2/B:554
9286 atoms, 8280 bonds, 1125 residues, 1 model selected
> select add #166.2/B:553
9314 atoms, 8304 bonds, 1129 residues, 1 model selected
> select add #166.2/B:552
9346 atoms, 8332 bonds, 1133 residues, 1 model selected
> select add #166.2/B:551
9382 atoms, 8364 bonds, 1137 residues, 1 model selected
> select add #166.2/B:550
9422 atoms, 8404 bonds, 1141 residues, 1 model selected
> select add #166.2/B:549
9450 atoms, 8428 bonds, 1145 residues, 1 model selected
> select add #166.2/B:548
9494 atoms, 8472 bonds, 1149 residues, 1 model selected
> select subtract #166.2/B:548
9450 atoms, 8428 bonds, 1145 residues, 1 model selected
> select add #166.2/B:547
9490 atoms, 8468 bonds, 1149 residues, 1 model selected
> select add #166.2/B:548
9534 atoms, 8512 bonds, 1153 residues, 1 model selected
> select add #166.2/B:546
9558 atoms, 8532 bonds, 1157 residues, 1 model selected
> select subtract #166.2/B:546
9534 atoms, 8512 bonds, 1153 residues, 1 model selected
> select add #166.2/B:545
9554 atoms, 8528 bonds, 1157 residues, 1 model selected
> select add #166.2/B:546
9578 atoms, 8548 bonds, 1161 residues, 1 model selected
> select add #166.2/B:544
9610 atoms, 8576 bonds, 1165 residues, 1 model selected
> select add #166.2/B:543
9642 atoms, 8604 bonds, 1169 residues, 1 model selected
> select add #166.2/B:542
9662 atoms, 8620 bonds, 1173 residues, 1 model selected
> select add #166.2/B:541
9706 atoms, 8664 bonds, 1177 residues, 1 model selected
> select add #166.2/B:540
9738 atoms, 8692 bonds, 1181 residues, 1 model selected
> select add #166.2/B:539
9758 atoms, 8708 bonds, 1185 residues, 1 model selected
> select add #166.2/B:538
9782 atoms, 8728 bonds, 1189 residues, 1 model selected
> select add #166.2/B:537
9814 atoms, 8756 bonds, 1193 residues, 1 model selected
> select add #166.2/B:536
9862 atoms, 8804 bonds, 1197 residues, 1 model selected
> select add #166.2/B:535
9894 atoms, 8832 bonds, 1201 residues, 1 model selected
> select add #166.2/B:534
9914 atoms, 8848 bonds, 1205 residues, 1 model selected
> select add #166.2/B:533
9938 atoms, 8868 bonds, 1209 residues, 1 model selected
> select add #166.2/B:532
9970 atoms, 8896 bonds, 1213 residues, 1 model selected
> select add #166.2/B:531
10002 atoms, 8924 bonds, 1217 residues, 1 model selected
> select add #166.2/B:530
10042 atoms, 8964 bonds, 1221 residues, 1 model selected
> select add #166.2/B:529
10086 atoms, 9008 bonds, 1225 residues, 1 model selected
> select add #166.2/B:528
10106 atoms, 9024 bonds, 1229 residues, 1 model selected
> select add #166.2/B:527
10150 atoms, 9064 bonds, 1233 residues, 1 model selected
> select add #166.2/B:526
10182 atoms, 9092 bonds, 1237 residues, 1 model selected
> select add #166.2/B:525
10226 atoms, 9136 bonds, 1241 residues, 1 model selected
> select add #166.2/B:524
10266 atoms, 9176 bonds, 1245 residues, 1 model selected
> select subtract #166.2/B:524
10226 atoms, 9136 bonds, 1241 residues, 1 model selected
> select add #166.2/B:524
10266 atoms, 9176 bonds, 1245 residues, 1 model selected
> select add #166.2/B:523
10310 atoms, 9220 bonds, 1249 residues, 1 model selected
> select add #166.2/B:522
10358 atoms, 9268 bonds, 1253 residues, 1 model selected
> select add #166.2/B:521
10378 atoms, 9284 bonds, 1257 residues, 1 model selected
> select add #166.2/B:520
10414 atoms, 9316 bonds, 1261 residues, 1 model selected
> select add #166.2/B:519
10454 atoms, 9356 bonds, 1265 residues, 1 model selected
> select add #166.2/B:518
10502 atoms, 9404 bonds, 1269 residues, 1 model selected
> select add #166.2/B:517
10534 atoms, 9432 bonds, 1273 residues, 1 model selected
> select add #166.2/B:516
10570 atoms, 9464 bonds, 1277 residues, 1 model selected
> select add #166.2/B:515
10602 atoms, 9492 bonds, 1281 residues, 1 model selected
> select add #166.2/B:514
10638 atoms, 9524 bonds, 1285 residues, 1 model selected
> select add #166.2/B:513
10658 atoms, 9540 bonds, 1289 residues, 1 model selected
> select add #166.2/B:512
10706 atoms, 9588 bonds, 1293 residues, 1 model selected
> select add #166.2/B:511
10738 atoms, 9616 bonds, 1297 residues, 1 model selected
> select subtract #166.2/B:511
10706 atoms, 9588 bonds, 1293 residues, 1 model selected
> select add #166.2/B:510
10738 atoms, 9616 bonds, 1297 residues, 1 model selected
> select add #166.2/B:511
10770 atoms, 9644 bonds, 1301 residues, 1 model selected
> select add #166.2/B:509
10786 atoms, 9656 bonds, 1305 residues, 1 model selected
> select add #166.2/B:508
10814 atoms, 9680 bonds, 1309 residues, 1 model selected
> select add #166.2/B:507
10846 atoms, 9708 bonds, 1313 residues, 1 model selected
> select add #166.2/B:506
10894 atoms, 9756 bonds, 1317 residues, 1 model selected
> select add #166.2/B:505
10934 atoms, 9796 bonds, 1321 residues, 1 model selected
> select add #166.2/B:504
10966 atoms, 9824 bonds, 1325 residues, 1 model selected
> select add #166.2/B:503
10998 atoms, 9852 bonds, 1329 residues, 1 model selected
> select add #166.2/B:502
11018 atoms, 9868 bonds, 1333 residues, 1 model selected
> select add #166.2/B:501
11050 atoms, 9896 bonds, 1337 residues, 1 model selected
> select add #166.2/B:500
11082 atoms, 9924 bonds, 1341 residues, 1 model selected
> select add #166.2/B:499
11110 atoms, 9952 bonds, 1345 residues, 1 model selected
> select add #166.2/B:498
11134 atoms, 9972 bonds, 1349 residues, 1 model selected
> select add #166.2/B:497
11166 atoms, 10000 bonds, 1353 residues, 1 model selected
> select add #166.2/B:496
11202 atoms, 10032 bonds, 1357 residues, 1 model selected
> select subtract #166.2/B:496
11166 atoms, 10000 bonds, 1353 residues, 1 model selected
> select add #166.2/B:496
11202 atoms, 10032 bonds, 1357 residues, 1 model selected
> select add #166.2/B:495
11234 atoms, 10060 bonds, 1361 residues, 1 model selected
> select add #166.2/B:494
11258 atoms, 10080 bonds, 1365 residues, 1 model selected
> select add #166.2/B:493
11290 atoms, 10108 bonds, 1369 residues, 1 model selected
> select add #166.2/B:492
11322 atoms, 10136 bonds, 1373 residues, 1 model selected
> select add #166.2/B:491
11366 atoms, 10180 bonds, 1377 residues, 1 model selected
> select add #166.2/B:490
11410 atoms, 10224 bonds, 1381 residues, 1 model selected
> select add #166.2/B:489
11434 atoms, 10244 bonds, 1385 residues, 1 model selected
> select add #166.2/B:488
11466 atoms, 10272 bonds, 1389 residues, 1 model selected
> select add #166.2/B:487
11486 atoms, 10288 bonds, 1393 residues, 1 model selected
> select add #166.2/B:486
11522 atoms, 10320 bonds, 1397 residues, 1 model selected
> select add #166.2/B:485
11558 atoms, 10352 bonds, 1401 residues, 1 model selected
> select add #166.2/B:484
11590 atoms, 10380 bonds, 1405 residues, 1 model selected
> select add #166.2/B:483
11614 atoms, 10400 bonds, 1409 residues, 1 model selected
> select add #166.2/B:482
11650 atoms, 10432 bonds, 1413 residues, 1 model selected
> select add #166.2/B:481
11682 atoms, 10460 bonds, 1417 residues, 1 model selected
> select add #166.2/B:480
11718 atoms, 10492 bonds, 1421 residues, 1 model selected
> select add #166.2/B:479
11750 atoms, 10520 bonds, 1425 residues, 1 model selected
> select add #166.2/B:478
11770 atoms, 10536 bonds, 1429 residues, 1 model selected
> select add #166.2/B:477
11806 atoms, 10568 bonds, 1433 residues, 1 model selected
> select add #166.2/B:476
11838 atoms, 10596 bonds, 1437 residues, 1 model selected
> select add #166.2/B:475
11854 atoms, 10608 bonds, 1441 residues, 1 model selected
> select add #166.2/B:474
11890 atoms, 10640 bonds, 1445 residues, 1 model selected
> select add #166.2/B:473
11922 atoms, 10668 bonds, 1449 residues, 1 model selected
> select add #166.2/B:472
11942 atoms, 10684 bonds, 1453 residues, 1 model selected
> select add #166.2/B:471
11974 atoms, 10712 bonds, 1457 residues, 1 model selected
> select add #166.2/B:470
12010 atoms, 10744 bonds, 1461 residues, 1 model selected
> select add #166.2/B:469
12042 atoms, 10772 bonds, 1465 residues, 1 model selected
> select add #166.2/B:468
12062 atoms, 10788 bonds, 1469 residues, 1 model selected
> select add #166.2/B:467
12094 atoms, 10816 bonds, 1473 residues, 1 model selected
> select add #166.2/B:466
12114 atoms, 10832 bonds, 1477 residues, 1 model selected
> select add #166.2/B:465
12146 atoms, 10860 bonds, 1481 residues, 1 model selected
> select add #166.2/B:464
12178 atoms, 10888 bonds, 1485 residues, 1 model selected
> select add #166.2/B:463
12222 atoms, 10928 bonds, 1489 residues, 1 model selected
> select add #166.2/B:462
12238 atoms, 10940 bonds, 1493 residues, 1 model selected
> select add #166.2/B:461
12282 atoms, 10980 bonds, 1497 residues, 1 model selected
> select add #166.2/B:460
12318 atoms, 11012 bonds, 1501 residues, 1 model selected
> select add #166.2/B:459
12362 atoms, 11056 bonds, 1505 residues, 1 model selected
> select add #166.2/B:458
12382 atoms, 11072 bonds, 1509 residues, 1 model selected
> select add #166.2/B:457
12414 atoms, 11100 bonds, 1513 residues, 1 model selected
> select add #166.2/B:456
12438 atoms, 11120 bonds, 1517 residues, 1 model selected
> select add #166.2/B:455
12458 atoms, 11136 bonds, 1521 residues, 1 model selected
> select add #166.2/B:454
12474 atoms, 11148 bonds, 1525 residues, 1 model selected
> select add #166.2/B:453
12510 atoms, 11180 bonds, 1529 residues, 1 model selected
> select add #166.2/B:452
12542 atoms, 11208 bonds, 1533 residues, 1 model selected
> select add #166.2/B:451
12574 atoms, 11236 bonds, 1537 residues, 1 model selected
> select add #166.2/B:450
12610 atoms, 11268 bonds, 1541 residues, 1 model selected
> select add #166.2/B:449
12646 atoms, 11300 bonds, 1545 residues, 1 model selected
> select add #166.2/B:448
12666 atoms, 11316 bonds, 1549 residues, 1 model selected
> select add #166.2/B:447
12698 atoms, 11344 bonds, 1553 residues, 1 model selected
> select add #166.2/B:446
12722 atoms, 11364 bonds, 1557 residues, 1 model selected
> select add #166.2/B:445
12754 atoms, 11392 bonds, 1561 residues, 1 model selected
> select add #166.2/B:444
12786 atoms, 11420 bonds, 1565 residues, 1 model selected
> select add #166.2/B:443
12818 atoms, 11448 bonds, 1569 residues, 1 model selected
> select add #166.2/B:442
12862 atoms, 11492 bonds, 1573 residues, 1 model selected
> select add #166.2/B:441
12894 atoms, 11520 bonds, 1577 residues, 1 model selected
> select add #166.2/B:440
12910 atoms, 11532 bonds, 1581 residues, 1 model selected
Drag select of 2 residues
> select add #166.2/B:437
12960 atoms, 11560 bonds, 1587 residues, 1 model selected
> select add #166.2/B:436
12988 atoms, 11584 bonds, 1591 residues, 1 model selected
Drag select of 4 residues
> select add #166.2/B:435
13037 atoms, 11596 bonds, 1599 residues, 1 model selected
> select add #166.2/B:430
13061 atoms, 11616 bonds, 1603 residues, 1 model selected
> select add #166.2/B:429
13093 atoms, 11644 bonds, 1607 residues, 1 model selected
> select add #166.2/B:428
13125 atoms, 11672 bonds, 1611 residues, 1 model selected
> select add #166.2/B:427
13153 atoms, 11696 bonds, 1615 residues, 1 model selected
> select add #166.2/B:426
13189 atoms, 11728 bonds, 1619 residues, 1 model selected
> select add #166.2/B:425
13233 atoms, 11772 bonds, 1623 residues, 1 model selected
> select add #166.2/B:424
13261 atoms, 11800 bonds, 1627 residues, 1 model selected
> select add #166.2/B:423
13281 atoms, 11816 bonds, 1631 residues, 1 model selected
> select add #166.2/B:422
13329 atoms, 11864 bonds, 1635 residues, 1 model selected
> select add #166.2/B:421
13377 atoms, 11912 bonds, 1639 residues, 1 model selected
> select add #166.2/B:420
13421 atoms, 11956 bonds, 1643 residues, 1 model selected
> select add #166.2/B:419
13453 atoms, 11984 bonds, 1647 residues, 1 model selected
> select add #166.2/B:418
13485 atoms, 12012 bonds, 1651 residues, 1 model selected
> select add #166.2/B:417
13529 atoms, 12052 bonds, 1655 residues, 1 model selected
> select add #166.2/B:416
13577 atoms, 12100 bonds, 1659 residues, 1 model selected
> select add #166.2/B:415
13609 atoms, 12128 bonds, 1663 residues, 1 model selected
> select add #166.2/B:414
13653 atoms, 12172 bonds, 1667 residues, 1 model selected
> select add #166.2/B:413
13685 atoms, 12200 bonds, 1671 residues, 1 model selected
> select add #166.2/B:412
13729 atoms, 12240 bonds, 1675 residues, 1 model selected
> select add #166.2/B:411
13765 atoms, 12272 bonds, 1679 residues, 1 model selected
> select add #166.2/B:410
13781 atoms, 12284 bonds, 1683 residues, 1 model selected
> select add #166.2/B:409
13817 atoms, 12316 bonds, 1687 residues, 1 model selected
> select add #166.2/B:408
13861 atoms, 12360 bonds, 1691 residues, 1 model selected
> select add #166.2/B:407
13909 atoms, 12408 bonds, 1695 residues, 1 model selected
> select add #166.2/B:406
13945 atoms, 12440 bonds, 1699 residues, 1 model selected
> select add #166.2/B:405
13973 atoms, 12464 bonds, 1703 residues, 1 model selected
> select add #166.2/B:404
14005 atoms, 12492 bonds, 1707 residues, 1 model selected
> select add #166.2/B:403
14061 atoms, 12552 bonds, 1711 residues, 1 model selected
> select add #166.2/B:402
14105 atoms, 12596 bonds, 1715 residues, 1 model selected
> select add #166.2/B:401
14149 atoms, 12636 bonds, 1719 residues, 1 model selected
> select add #166.2/B:400
14185 atoms, 12668 bonds, 1723 residues, 1 model selected
> select add #166.2/B:399
14221 atoms, 12700 bonds, 1727 residues, 1 model selected
> select add #166.2/B:398
14241 atoms, 12716 bonds, 1731 residues, 1 model selected
> select add #166.2/B:397
14285 atoms, 12756 bonds, 1735 residues, 1 model selected
> select add #166.2/B:396
14321 atoms, 12788 bonds, 1739 residues, 1 model selected
> select add #166.2/B:395
14357 atoms, 12820 bonds, 1743 residues, 1 model selected
> select subtract #166.2/B:395
14321 atoms, 12788 bonds, 1739 residues, 1 model selected
> select add #166.2/B:395
14357 atoms, 12820 bonds, 1743 residues, 1 model selected
> select add #166.2/B:394
14389 atoms, 12848 bonds, 1747 residues, 1 model selected
> select add #166.2/B:393
14421 atoms, 12876 bonds, 1751 residues, 1 model selected
> select add #166.2/B:392
14465 atoms, 12920 bonds, 1755 residues, 1 model selected
> select add #166.2/B:391
14493 atoms, 12944 bonds, 1759 residues, 1 model selected
> select add #166.2/B:390
14521 atoms, 12972 bonds, 1763 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:389
14553 atoms, 13000 bonds, 1767 residues, 1 model selected
> select add #166.2/B:388
14585 atoms, 13028 bonds, 1771 residues, 1 model selected
> select add #166.2/B:387
14613 atoms, 13052 bonds, 1775 residues, 1 model selected
> select add #166.2/B:386
14641 atoms, 13080 bonds, 1779 residues, 1 model selected
> select add #166.2/B:385
14677 atoms, 13112 bonds, 1783 residues, 1 model selected
> select add #166.2/B:384
14709 atoms, 13140 bonds, 1787 residues, 1 model selected
> select add #166.2/B:383
14737 atoms, 13168 bonds, 1791 residues, 1 model selected
> select add #166.2/B:382
14785 atoms, 13216 bonds, 1795 residues, 1 model selected
> select add #166.2/B:381
14829 atoms, 13260 bonds, 1799 residues, 1 model selected
> select add #166.2/B:380
14853 atoms, 13280 bonds, 1803 residues, 1 model selected
> select add #166.2/B:379
14885 atoms, 13308 bonds, 1807 residues, 1 model selected
> select add #166.2/B:378
14905 atoms, 13324 bonds, 1811 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:377
14937 atoms, 13352 bonds, 1815 residues, 1 model selected
> select add #166.2/B:376
14965 atoms, 13376 bonds, 1819 residues, 1 model selected
> select add #166.2/B:375
14989 atoms, 13396 bonds, 1823 residues, 1 model selected
> select add #166.2/B:374
15021 atoms, 13424 bonds, 1827 residues, 1 model selected
> select add #166.2/B:373
15057 atoms, 13456 bonds, 1831 residues, 1 model selected
> select add #166.2/B:372
15093 atoms, 13488 bonds, 1835 residues, 1 model selected
> select add #166.2/B:371
15121 atoms, 13512 bonds, 1839 residues, 1 model selected
> select add #166.2/B:370
15161 atoms, 13552 bonds, 1843 residues, 1 model selected
> select add #166.2/B:369
15185 atoms, 13572 bonds, 1847 residues, 1 model selected
> select add #166.2/B:367
15217 atoms, 13600 bonds, 1851 residues, 1 model selected
> select add #166.2/B:368
15237 atoms, 13616 bonds, 1855 residues, 1 model selected
> select add #166.2/B:366
15273 atoms, 13648 bonds, 1859 residues, 1 model selected
> select add #166.2/B:365
15305 atoms, 13676 bonds, 1863 residues, 1 model selected
> select add #166.2/B:364
15325 atoms, 13692 bonds, 1867 residues, 1 model selected
> select add #166.2/B:363
15361 atoms, 13724 bonds, 1871 residues, 1 model selected
> select add #166.2/B:362
15385 atoms, 13744 bonds, 1875 residues, 1 model selected
> select add #166.2/B:361
15405 atoms, 13760 bonds, 1879 residues, 1 model selected
> select add #166.2/B:360
15441 atoms, 13792 bonds, 1883 residues, 1 model selected
> select add #166.2/B:359
15473 atoms, 13820 bonds, 1887 residues, 1 model selected
> select add #166.2/B:358
15501 atoms, 13844 bonds, 1891 residues, 1 model selected
> select add #166.2/B:357
15533 atoms, 13872 bonds, 1895 residues, 1 model selected
> select add #166.2/B:356
15549 atoms, 13884 bonds, 1899 residues, 1 model selected
> select add #166.2/B:355
15585 atoms, 13916 bonds, 1903 residues, 1 model selected
> select add #166.2/B:354
15621 atoms, 13948 bonds, 1907 residues, 1 model selected
> select add #166.2/B:353
15653 atoms, 13976 bonds, 1911 residues, 1 model selected
> select add #166.2/B:352
15677 atoms, 13996 bonds, 1915 residues, 1 model selected
> select add #166.2/B:351
15705 atoms, 14020 bonds, 1919 residues, 1 model selected
> select add #166.2/B:350
15737 atoms, 14048 bonds, 1923 residues, 1 model selected
> select add #166.2/B:349
15773 atoms, 14080 bonds, 1927 residues, 1 model selected
> select add #166.2/B:348
15805 atoms, 14108 bonds, 1931 residues, 1 model selected
> select add #166.2/B:347
15825 atoms, 14124 bonds, 1935 residues, 1 model selected
> select add #166.2/B:346
15857 atoms, 14152 bonds, 1939 residues, 1 model selected
> select add #166.2/B:345
15889 atoms, 14180 bonds, 1943 residues, 1 model selected
> select add #166.2/B:344
15909 atoms, 14196 bonds, 1947 residues, 1 model selected
> select add #166.2/B:343
15941 atoms, 14224 bonds, 1951 residues, 1 model selected
> select add #166.2/B:342
15973 atoms, 14252 bonds, 1955 residues, 1 model selected
> select add #166.2/B:341
16005 atoms, 14280 bonds, 1959 residues, 1 model selected
> select add #166.2/B:340
16041 atoms, 14312 bonds, 1963 residues, 1 model selected
> select add #166.2/B:339
16069 atoms, 14340 bonds, 1967 residues, 1 model selected
> select add #166.2/B:338
16117 atoms, 14388 bonds, 1971 residues, 1 model selected
> select add #166.2/B:337
16149 atoms, 14416 bonds, 1975 residues, 1 model selected
> select add #166.2/B:336
16189 atoms, 14456 bonds, 1979 residues, 1 model selected
> select add #166.2/B:335
16221 atoms, 14484 bonds, 1983 residues, 1 model selected
> select add #166.2/B:334
16269 atoms, 14532 bonds, 1987 residues, 1 model selected
> select add #166.2/B:333
16309 atoms, 14572 bonds, 1991 residues, 1 model selected
> select add #166.2/B:332
16345 atoms, 14604 bonds, 1995 residues, 1 model selected
> select add #166.2/B:331
16377 atoms, 14632 bonds, 1999 residues, 1 model selected
> select add #166.2/B:330
16417 atoms, 14672 bonds, 2003 residues, 1 model selected
> select add #166.2/B:329
16453 atoms, 14704 bonds, 2007 residues, 1 model selected
> select add #166.2/B:328
16485 atoms, 14732 bonds, 2011 residues, 1 model selected
> select add #166.2/B:327
16505 atoms, 14748 bonds, 2015 residues, 1 model selected
> select add #166.2/B:326
16541 atoms, 14780 bonds, 2019 residues, 1 model selected
> select add #166.2/B:325
16577 atoms, 14812 bonds, 2023 residues, 1 model selected
> select add #166.2/B:324
16625 atoms, 14860 bonds, 2027 residues, 1 model selected
> select add #166.2/B:323
16665 atoms, 14900 bonds, 2031 residues, 1 model selected
> select add #166.2/B:322
16681 atoms, 14912 bonds, 2035 residues, 1 model selected
> select add #166.2/B:321
16713 atoms, 14940 bonds, 2039 residues, 1 model selected
> select add #166.2/B:320
16757 atoms, 14980 bonds, 2043 residues, 1 model selected
> select add #166.2/B:319
16777 atoms, 14996 bonds, 2047 residues, 1 model selected
> select add #166.2/B:318
16813 atoms, 15028 bonds, 2051 residues, 1 model selected
> select add #166.2/B:317
16845 atoms, 15056 bonds, 2055 residues, 1 model selected
Drag select of 1 residues
> select add #166.2/B:316
16885 atoms, 15084 bonds, 2060 residues, 1 model selected
> select add #166.2/B:315
16901 atoms, 15096 bonds, 2064 residues, 1 model selected
> select add #166.2/B:314
16933 atoms, 15124 bonds, 2068 residues, 1 model selected
> select add #166.2/B:313
16953 atoms, 15140 bonds, 2072 residues, 1 model selected
> select add #166.2/B:311
16989 atoms, 15172 bonds, 2076 residues, 1 model selected
> select add #166.2/B:310
17021 atoms, 15200 bonds, 2080 residues, 1 model selected
> select add #166.2/B:309
17057 atoms, 15232 bonds, 2084 residues, 1 model selected
> select add #166.2/B:308
17077 atoms, 15248 bonds, 2088 residues, 1 model selected
> select add #166.2/B:307
17109 atoms, 15276 bonds, 2092 residues, 1 model selected
> select add #166.2/B:306
17129 atoms, 15292 bonds, 2096 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:305
17153 atoms, 15312 bonds, 2100 residues, 1 model selected
> select add #166.2/B:304
17189 atoms, 15344 bonds, 2104 residues, 1 model selected
> select add #166.2/B:303
17225 atoms, 15376 bonds, 2108 residues, 1 model selected
> select add #166.2/B:302
17257 atoms, 15404 bonds, 2112 residues, 1 model selected
> select add #166.2/B:301
17293 atoms, 15436 bonds, 2116 residues, 1 model selected
> select add #166.2/B:300
17329 atoms, 15468 bonds, 2120 residues, 1 model selected
> select add #166.2/B:299
17377 atoms, 15516 bonds, 2124 residues, 1 model selected
> select add #166.2/B:298
17397 atoms, 15532 bonds, 2128 residues, 1 model selected
> select add #166.2/B:297
17429 atoms, 15560 bonds, 2132 residues, 1 model selected
> select add #166.2/B:296
17461 atoms, 15588 bonds, 2136 residues, 1 model selected
> select add #166.2/B:295
17497 atoms, 15620 bonds, 2140 residues, 1 model selected
> select add #166.2/B:294
17529 atoms, 15648 bonds, 2144 residues, 1 model selected
> select add #166.2/B:293
17565 atoms, 15680 bonds, 2148 residues, 1 model selected
> select add #166.2/B:292
17609 atoms, 15724 bonds, 2152 residues, 1 model selected
> select add #166.2/B:291
17641 atoms, 15752 bonds, 2156 residues, 1 model selected
> select add #166.2/B:290
17673 atoms, 15780 bonds, 2160 residues, 1 model selected
> select add #166.2/B:289
17717 atoms, 15824 bonds, 2164 residues, 1 model selected
> select subtract #166.2/B:289
17673 atoms, 15780 bonds, 2160 residues, 1 model selected
> select add #166.2/B:288
17705 atoms, 15808 bonds, 2164 residues, 1 model selected
> select subtract #166.2/B:288
17673 atoms, 15780 bonds, 2160 residues, 1 model selected
> select add #166.2/B:289
17717 atoms, 15824 bonds, 2164 residues, 1 model selected
> select add #166.2/B:288
17749 atoms, 15852 bonds, 2168 residues, 1 model selected
> select add #166.2/B:287
17785 atoms, 15884 bonds, 2172 residues, 1 model selected
> select add #166.2/B:286
17809 atoms, 15904 bonds, 2176 residues, 1 model selected
> select add #166.2/B:285
17829 atoms, 15920 bonds, 2180 residues, 1 model selected
> select add #166.2/B:284
17861 atoms, 15948 bonds, 2184 residues, 1 model selected
> select add #166.2/B:283
17905 atoms, 15988 bonds, 2188 residues, 1 model selected
> select add #166.2/B:282
17925 atoms, 16004 bonds, 2192 residues, 1 model selected
> select add #166.2/B:281
17957 atoms, 16032 bonds, 2196 residues, 1 model selected
> select add #166.2/B:280
17985 atoms, 16060 bonds, 2200 residues, 1 model selected
> select add #166.2/B:279
18021 atoms, 16092 bonds, 2204 residues, 1 model selected
> select add #166.2/B:278
18053 atoms, 16120 bonds, 2208 residues, 1 model selected
> select add #166.2/B:277
18097 atoms, 16164 bonds, 2212 residues, 1 model selected
> select add #166.2/B:276
18117 atoms, 16180 bonds, 2216 residues, 1 model selected
> select add #166.2/B:275
18149 atoms, 16208 bonds, 2220 residues, 1 model selected
> select add #166.2/B:274
18173 atoms, 16228 bonds, 2224 residues, 1 model selected
> select add #166.2/B:273
18205 atoms, 16256 bonds, 2228 residues, 1 model selected
> select add #166.2/B:272
18233 atoms, 16284 bonds, 2232 residues, 1 model selected
> select add #166.2/B:271
18273 atoms, 16324 bonds, 2236 residues, 1 model selected
Drag select of 4 residues
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:266
18334 atoms, 16352 bonds, 2244 residues, 1 model selected
> select add #166.2/B:265
18354 atoms, 16368 bonds, 2248 residues, 1 model selected
> select add #166.2/B:264
18390 atoms, 16400 bonds, 2252 residues, 1 model selected
> select add #166.2/B:263
18434 atoms, 16444 bonds, 2256 residues, 1 model selected
> select add #166.2/B:262
18482 atoms, 16492 bonds, 2260 residues, 1 model selected
> select add #166.2/B:261
18518 atoms, 16524 bonds, 2264 residues, 1 model selected
> select add #166.2/B:260
18534 atoms, 16536 bonds, 2268 residues, 1 model selected
> select add #166.2/B:259
18554 atoms, 16552 bonds, 2272 residues, 1 model selected
> select add #166.2/B:258
18602 atoms, 16600 bonds, 2276 residues, 1 model selected
> select add #166.2/B:257
18650 atoms, 16648 bonds, 2280 residues, 1 model selected
> select add #166.2/B:256
18674 atoms, 16668 bonds, 2284 residues, 1 model selected
> select add #166.2/B:255
18710 atoms, 16700 bonds, 2288 residues, 1 model selected
> select add #166.2/B:254
18742 atoms, 16728 bonds, 2292 residues, 1 model selected
> select add #166.2/B:253
18762 atoms, 16744 bonds, 2296 residues, 1 model selected
> select add #166.2/B:252
18810 atoms, 16792 bonds, 2300 residues, 1 model selected
> select add #166.2/B:251
18830 atoms, 16808 bonds, 2304 residues, 1 model selected
> select add #166.2/B:250
18878 atoms, 16856 bonds, 2308 residues, 1 model selected
> select add #166.2/B:249
18902 atoms, 16876 bonds, 2312 residues, 1 model selected
> select add #166.2/B:248
18950 atoms, 16924 bonds, 2316 residues, 1 model selected
> select add #166.2/B:247
18994 atoms, 16968 bonds, 2320 residues, 1 model selected
> select add #166.2/B:246
19018 atoms, 16988 bonds, 2324 residues, 1 model selected
> select add #166.2/B:245
19054 atoms, 17020 bonds, 2328 residues, 1 model selected
> select add #166.2/B:244
19090 atoms, 17052 bonds, 2332 residues, 1 model selected
> select add #166.2/B:243
19138 atoms, 17100 bonds, 2336 residues, 1 model selected
> select add #166.2/B:242
19170 atoms, 17128 bonds, 2340 residues, 1 model selected
> select add #166.2/B:241
19206 atoms, 17160 bonds, 2344 residues, 1 model selected
> select add #166.2/B:240
19254 atoms, 17208 bonds, 2348 residues, 1 model selected
> select add #166.2/B:239
19286 atoms, 17236 bonds, 2352 residues, 1 model selected
> select add #166.2/B:238
19314 atoms, 17260 bonds, 2356 residues, 1 model selected
> select add #166.2/B:237
19346 atoms, 17288 bonds, 2360 residues, 1 model selected
> select add #166.2/B:236
19390 atoms, 17328 bonds, 2364 residues, 1 model selected
> select add #166.2/B:235
19418 atoms, 17352 bonds, 2368 residues, 1 model selected
> select add #166.2/B:234
19450 atoms, 17380 bonds, 2372 residues, 1 model selected
> select add #166.2/B:233
19486 atoms, 17412 bonds, 2376 residues, 1 model selected
> select add #166.2/B:232
19518 atoms, 17440 bonds, 2380 residues, 1 model selected
> select add #166.2/B:231
19566 atoms, 17488 bonds, 2384 residues, 1 model selected
> select add #166.2/B:230
19606 atoms, 17528 bonds, 2388 residues, 1 model selected
> select subtract #166.2/B:230
19566 atoms, 17488 bonds, 2384 residues, 1 model selected
> select add #166.2/B:229
19614 atoms, 17536 bonds, 2388 residues, 1 model selected
> select add #166.2/B:230
19654 atoms, 17576 bonds, 2392 residues, 1 model selected
> select add #166.2/B:228
19702 atoms, 17624 bonds, 2396 residues, 1 model selected
> select add #166.2/B:227
19734 atoms, 17652 bonds, 2400 residues, 1 model selected
> select add #166.2/B:226
19766 atoms, 17680 bonds, 2404 residues, 1 model selected
> select add #166.2/B:225
19802 atoms, 17712 bonds, 2408 residues, 1 model selected
> select add #166.2/B:224
19834 atoms, 17740 bonds, 2412 residues, 1 model selected
> select add #166.2/B:223
19870 atoms, 17772 bonds, 2416 residues, 1 model selected
> select add #166.2/B:222
19902 atoms, 17800 bonds, 2420 residues, 1 model selected
> select add #166.2/B:221
19942 atoms, 17840 bonds, 2424 residues, 1 model selected
> select add #166.2/B:219
19962 atoms, 17856 bonds, 2428 residues, 1 model selected
> select add #166.2/B:220
20010 atoms, 17904 bonds, 2432 residues, 1 model selected
> select add #166.2/B:218
20034 atoms, 17924 bonds, 2436 residues, 1 model selected
> select add #166.2/B:217
20062 atoms, 17948 bonds, 2440 residues, 1 model selected
> select add #166.2/B:216
20094 atoms, 17976 bonds, 2444 residues, 1 model selected
> select add #166.2/B:215
20114 atoms, 17992 bonds, 2448 residues, 1 model selected
> select add #166.2/B:214
20146 atoms, 18020 bonds, 2452 residues, 1 model selected
> select add #166.2/B:213
20178 atoms, 18048 bonds, 2456 residues, 1 model selected
> select add #166.2/B:212
20198 atoms, 18064 bonds, 2460 residues, 1 model selected
> select add #166.2/B:211
20222 atoms, 18084 bonds, 2464 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:210
20250 atoms, 18108 bonds, 2468 residues, 1 model selected
> select add #166.2/B:209
20274 atoms, 18128 bonds, 2472 residues, 1 model selected
> select add #166.2/B:208
20294 atoms, 18144 bonds, 2476 residues, 1 model selected
> select add #166.2/B:207
20326 atoms, 18172 bonds, 2480 residues, 1 model selected
> select add #166.2/B:206
20362 atoms, 18204 bonds, 2484 residues, 1 model selected
> select add #166.2/B:205
20398 atoms, 18236 bonds, 2488 residues, 1 model selected
> select add #166.2/B:204
20422 atoms, 18256 bonds, 2492 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:203
20442 atoms, 18272 bonds, 2496 residues, 1 model selected
> select add #166.2/B:202
20474 atoms, 18300 bonds, 2500 residues, 1 model selected
> select add #166.2/B:201
20498 atoms, 18320 bonds, 2504 residues, 1 model selected
> select add #166.2/B:200
20522 atoms, 18340 bonds, 2508 residues, 1 model selected
> select add #166.2/B:199
20554 atoms, 18368 bonds, 2512 residues, 1 model selected
> select add #166.2/B:198
20598 atoms, 18412 bonds, 2516 residues, 1 model selected
> select add #166.2/B:197
20630 atoms, 18440 bonds, 2520 residues, 1 model selected
> select add #166.2/B:196
20662 atoms, 18468 bonds, 2524 residues, 1 model selected
> select add #166.1/A:347
20698 atoms, 18500 bonds, 2528 residues, 2 models selected
> select add #166.1/A:348
20730 atoms, 18528 bonds, 2532 residues, 2 models selected
> select subtract #166.1/A:347
20694 atoms, 18496 bonds, 2528 residues, 2 models selected
> select add #166.1/A:347
20730 atoms, 18528 bonds, 2532 residues, 2 models selected
> select subtract #166.1/A:347
20694 atoms, 18496 bonds, 2528 residues, 2 models selected
> select subtract #166.1/A:348
20662 atoms, 18468 bonds, 2524 residues, 1 model selected
> select add #166.2/B:195
20694 atoms, 18496 bonds, 2528 residues, 1 model selected
> select add #166.2/B:194
20714 atoms, 18512 bonds, 2532 residues, 1 model selected
> select add #166.2/B:193
20730 atoms, 18524 bonds, 2536 residues, 1 model selected
> select add #166.2/B:192
20762 atoms, 18552 bonds, 2540 residues, 1 model selected
> select add #166.2/B:191
20806 atoms, 18596 bonds, 2544 residues, 1 model selected
> select add #166.2/B:190
20838 atoms, 18624 bonds, 2548 residues, 1 model selected
> select add #166.2/B:189
20874 atoms, 18656 bonds, 2552 residues, 1 model selected
> select add #166.2/B:188
20910 atoms, 18688 bonds, 2556 residues, 1 model selected
> select add #166.2/B:187
20946 atoms, 18720 bonds, 2560 residues, 1 model selected
> select add #166.2/B:186
20990 atoms, 18764 bonds, 2564 residues, 1 model selected
> select add #166.2/B:185
21026 atoms, 18796 bonds, 2568 residues, 1 model selected
> select add #166.2/B:184
21058 atoms, 18824 bonds, 2572 residues, 1 model selected
> select add #166.2/B:183
21086 atoms, 18848 bonds, 2576 residues, 1 model selected
> select add #166.2/B:182
21102 atoms, 18860 bonds, 2580 residues, 1 model selected
> select add #166.2/B:181
21134 atoms, 18888 bonds, 2584 residues, 1 model selected
> select add #166.2/B:180
21166 atoms, 18916 bonds, 2588 residues, 1 model selected
> select add #166.2/B:179
21206 atoms, 18956 bonds, 2592 residues, 1 model selected
> select add #166.2/B:178
21230 atoms, 18976 bonds, 2596 residues, 1 model selected
> select add #166.2/B:177
21250 atoms, 18992 bonds, 2600 residues, 1 model selected
> select add #166.2/B:176
21282 atoms, 19020 bonds, 2604 residues, 1 model selected
> select add #166.2/B:175
21298 atoms, 19032 bonds, 2608 residues, 1 model selected
> select add #166.2/B:174
21334 atoms, 19064 bonds, 2612 residues, 1 model selected
> select add #166.2/B:173
21358 atoms, 19084 bonds, 2616 residues, 1 model selected
> select add #166.2/B:172
21402 atoms, 19128 bonds, 2620 residues, 1 model selected
> select add #166.2/B:171
21426 atoms, 19148 bonds, 2624 residues, 1 model selected
> select add #166.2/B:170
21446 atoms, 19164 bonds, 2628 residues, 1 model selected
> select add #166.2/B:169
21466 atoms, 19180 bonds, 2632 residues, 1 model selected
> select add #166.2/B:168
21502 atoms, 19212 bonds, 2636 residues, 1 model selected
> select add #166.2/B:167
21534 atoms, 19240 bonds, 2640 residues, 1 model selected
> select add #166.2/B:166
21578 atoms, 19284 bonds, 2644 residues, 1 model selected
> select add #166.2/B:165
21610 atoms, 19312 bonds, 2648 residues, 1 model selected
> select add #166.2/B:164
21650 atoms, 19352 bonds, 2652 residues, 1 model selected
> select add #166.2/B:163
21682 atoms, 19380 bonds, 2656 residues, 1 model selected
> select add #166.2/B:162
21702 atoms, 19396 bonds, 2660 residues, 1 model selected
> select add #166.2/B:161
21738 atoms, 19428 bonds, 2664 residues, 1 model selected
> select add #166.2/B:160
21770 atoms, 19456 bonds, 2668 residues, 1 model selected
> select add #166.2/B:159
21806 atoms, 19488 bonds, 2672 residues, 1 model selected
> select add #166.2/B:158
21842 atoms, 19520 bonds, 2676 residues, 1 model selected
> select add #166.2/B:157
21858 atoms, 19532 bonds, 2680 residues, 1 model selected
> select add #166.2/B:155
21894 atoms, 19564 bonds, 2684 residues, 1 model selected
> select add #166.2/B:156
21930 atoms, 19596 bonds, 2688 residues, 1 model selected
> select add #166.2/B:154
21978 atoms, 19644 bonds, 2692 residues, 1 model selected
> select add #166.2/B:153
22010 atoms, 19672 bonds, 2696 residues, 1 model selected
> select add #166.2/B:152
22042 atoms, 19700 bonds, 2700 residues, 1 model selected
> select add #166.2/B:151
22066 atoms, 19720 bonds, 2704 residues, 1 model selected
> select add #166.2/B:150
22086 atoms, 19736 bonds, 2708 residues, 1 model selected
> select add #166.2/B:149
22122 atoms, 19768 bonds, 2712 residues, 1 model selected
> select add #166.2/B:148
22158 atoms, 19800 bonds, 2716 residues, 1 model selected
> select add #166.2/B:147
22190 atoms, 19828 bonds, 2720 residues, 1 model selected
> select add #166.2/B:146
22222 atoms, 19856 bonds, 2724 residues, 1 model selected
> select add #166.2/B:145
22242 atoms, 19872 bonds, 2728 residues, 1 model selected
> select add #166.2/B:144
22274 atoms, 19900 bonds, 2732 residues, 1 model selected
> select add #166.2/B:143
22302 atoms, 19924 bonds, 2736 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:142
22338 atoms, 19956 bonds, 2740 residues, 1 model selected
> select add #166.2/B:141
22370 atoms, 19984 bonds, 2744 residues, 1 model selected
> select add #166.2/B:140
22406 atoms, 20016 bonds, 2748 residues, 1 model selected
> select add #166.2/B:139
22438 atoms, 20044 bonds, 2752 residues, 1 model selected
> select add #166.2/B:138
22462 atoms, 20064 bonds, 2756 residues, 1 model selected
> select subtract #166.2/B:138
22438 atoms, 20044 bonds, 2752 residues, 1 model selected
> hide sel cartoons
> select add #166.2/B:138
22462 atoms, 20064 bonds, 2756 residues, 1 model selected
> select add #166.2/B:137
22506 atoms, 20104 bonds, 2760 residues, 1 model selected
> show sel cartoons
> hide sel cartoons
> select add #166.2/B:136
22542 atoms, 20136 bonds, 2764 residues, 1 model selected
> select add #166.2/B:135
22574 atoms, 20164 bonds, 2768 residues, 1 model selected
> select add #166.2/B:134
22598 atoms, 20184 bonds, 2772 residues, 1 model selected
> select add #166.2/B:133
22630 atoms, 20212 bonds, 2776 residues, 1 model selected
> select add #166.2/B:132
22666 atoms, 20244 bonds, 2780 residues, 1 model selected
> select add #166.2/B:131
22682 atoms, 20256 bonds, 2784 residues, 1 model selected
> select add #166.2/B:130
22714 atoms, 20284 bonds, 2788 residues, 1 model selected
> select add #166.2/B:129
22746 atoms, 20312 bonds, 2792 residues, 1 model selected
> select add #166.2/B:128
22778 atoms, 20340 bonds, 2796 residues, 1 model selected
> select add #166.2/B:127
22806 atoms, 20368 bonds, 2800 residues, 1 model selected
> select add #166.2/B:126
22838 atoms, 20396 bonds, 2804 residues, 1 model selected
> select add #166.2/B:125
22870 atoms, 20424 bonds, 2808 residues, 1 model selected
> select add #166.2/B:124
22902 atoms, 20452 bonds, 2812 residues, 1 model selected
> select add #166.2/B:123
22934 atoms, 20480 bonds, 2816 residues, 1 model selected
> select add #166.2/B:122
22970 atoms, 20512 bonds, 2820 residues, 1 model selected
> select add #166.2/B:121
23002 atoms, 20540 bonds, 2824 residues, 1 model selected
> select add #166.2/B:120
23038 atoms, 20572 bonds, 2828 residues, 1 model selected
> select add #166.2/B:119
23054 atoms, 20584 bonds, 2832 residues, 1 model selected
> select add #166.2/B:118
23090 atoms, 20616 bonds, 2836 residues, 1 model selected
> select add #166.2/B:117
23110 atoms, 20632 bonds, 2840 residues, 1 model selected
> select add #166.2/B:116
23146 atoms, 20664 bonds, 2844 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> select add #166.2/B:115
23160 atoms, 20676 bonds, 2846 residues, 1 model selected
> select subtract #166.2/B:115
23146 atoms, 20664 bonds, 2844 residues, 1 model selected
> select add #166.2/B:114
23162 atoms, 20678 bonds, 2846 residues, 1 model selected
> select add #166.2/B:115
23176 atoms, 20690 bonds, 2848 residues, 1 model selected
> select add #166.2/B:113
23192 atoms, 20704 bonds, 2850 residues, 1 model selected
> select add #166.2/B:112
23202 atoms, 20712 bonds, 2852 residues, 1 model selected
> select add #166.2/B:111
23218 atoms, 20726 bonds, 2854 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> select add #166.2/B:267
23236 atoms, 20746 bonds, 2857 residues, 1 model selected
> select add #166.2/B:268
23257 atoms, 20774 bonds, 2860 residues, 1 model selected
> select add #166.2/B:269
23281 atoms, 20802 bonds, 2863 residues, 1 model selected
> select add #166.2/B:270
23305 atoms, 20830 bonds, 2866 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> select add #166.2/B:312
23329 atoms, 20858 bonds, 2869 residues, 1 model selected
> select add #166.2/B:844
23359 atoms, 20894 bonds, 2872 residues, 1 model selected
> select add #166.2/B:843
23383 atoms, 20922 bonds, 2875 residues, 1 model selected
> select add #166.2/B:842
23416 atoms, 20966 bonds, 2878 residues, 1 model selected
> select add #166.2/B:841
23443 atoms, 20998 bonds, 2881 residues, 1 model selected
> hide sel cartoons
> select add #166.2/B:840
23455 atoms, 21010 bonds, 2884 residues, 1 model selected
> select add #166.2/B:839
23482 atoms, 21042 bonds, 2887 residues, 1 model selected
> select add #166.2/B:838
23509 atoms, 21074 bonds, 2890 residues, 1 model selected
> select add #166.2/B:837
23536 atoms, 21106 bonds, 2893 residues, 1 model selected
> select add #166.2/B:836
23563 atoms, 21138 bonds, 2896 residues, 1 model selected
> select add #166.2/B:835
23587 atoms, 21166 bonds, 2899 residues, 1 model selected
> select add #166.2/B:834
23611 atoms, 21194 bonds, 2902 residues, 1 model selected
> select add #166.2/B:833
23644 atoms, 21234 bonds, 2905 residues, 1 model selected
> select add #166.2/B:832
23671 atoms, 21266 bonds, 2908 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> ~select
Nothing selected
> select #166.2/B
23824 atoms, 24368 bonds, 2926 residues, 1 model selected
> ~select
Nothing selected
> select #166.2/B:187-458
8848 atoms, 9060 bonds, 1088 residues, 1 model selected
> hide #166.1 models
> show #166.1 models
> hide #166.3 models
> show #166.3 models
> hide #166.1 models
> hide #166.3 models
> ~select
Nothing selected
> select #166.2/B:116-166
1612 atoms, 1624 bonds, 204 residues, 1 model selected
> select clear
Drag select of 112 residues
> show only sel
Expected a keyword
> show only select
Expected a keyword
> hide sel cartoons
> show sel cartoons
> hide #166.2/B cartoons
> show sel cartoons
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/test.pdb selectedOnly true
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/test.pdb
Chain information for test.pdb #169
---
Chain | Description
B | No description available
> hide #166.2 models
> close #169
> show #166.2 models
> select add #166.2
23824 atoms, 24368 bonds, 2926 residues, 1 model selected
> show sel cartoons
> select subtract #166.2
Nothing selected
> show #166.1 models
> show #!167 models
> color #167 #b2b2b25e models
> hide #!167 models
> hide #166.1 models
> select add #166.2/B:119
16 atoms, 12 bonds, 4 residues, 1 model selected
> select subtract #166.2/B:119
Nothing selected
Drag select of 12 residues
> select clear
Drag select of 1621 residues
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/PflB_Test1.pdb selectedOnly true
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/PflB_Test1.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/July_2024/PflB_Test1.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
14 messages similar to the above omitted
Chain information for PflB_Test1.pdb #169
---
Chain | Description
B | No description available
> hide #!166 models
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 4 models selected
> select subtract #166
Nothing selected
> show #166.3 models
> hide #166.3 models
> show #166.3 models
> hide #166.3 models
> show #166.1 models
> hide #166.2 models
> split #169
Did not split PflB_Test1.pdb, has only one piece
> select add #169/B:344
10 atoms, 8 bonds, 2 residues, 1 model selected
> select subtract #169/B:344
Nothing selected
> hide #166.1 models
> select #169/B:138
12 atoms, 10 bonds, 2 residues, 1 model selected
> select #169/B:138
12 atoms, 10 bonds, 2 residues, 1 model selected
> select clear
Drag select of 363 residues, 4 pseudobonds
> hide sel cartoons
Drag select of 5 residues
> hide sel cartoons
Drag select of 4 residues
> hide sel cartoons
Drag select of 1 residues
> hide sel cartoons
Drag select of 1 residues
> hide sel cartoons
Drag select of 2 residues
> select add #169/B:138
3051 atoms, 10 bonds, 4 pseudobonds, 378 residues, 2 models selected
> hide sel cartoons
Drag select of 3 residues
> select add #169/B:134
3091 atoms, 20 bonds, 4 pseudobonds, 383 residues, 2 models selected
> select add #169/B:132
3109 atoms, 36 bonds, 4 pseudobonds, 385 residues, 2 models selected
> select add #169/B:133
3125 atoms, 50 bonds, 4 pseudobonds, 387 residues, 2 models selected
> select add #169/B:131
3133 atoms, 56 bonds, 4 pseudobonds, 389 residues, 2 models selected
> select add #169/B:130
3149 atoms, 70 bonds, 4 pseudobonds, 391 residues, 2 models selected
Drag select of 14 residues
> hide sel cartoons
> show sel cartoons
> select subtract #169/B:132
3239 atoms, 54 bonds, 4 pseudobonds, 403 residues, 2 models selected
> select subtract #169/B:131
3231 atoms, 48 bonds, 4 pseudobonds, 401 residues, 2 models selected
> select subtract #169/B:130
3215 atoms, 34 bonds, 4 pseudobonds, 399 residues, 2 models selected
> select subtract #169/B:134
3203 atoms, 24 bonds, 4 pseudobonds, 397 residues, 2 models selected
> select subtract #169/B:133
3187 atoms, 10 bonds, 4 pseudobonds, 395 residues, 2 models selected
> select subtract #169/B:138
3175 atoms, 4 pseudobonds, 393 residues, 2 models selected
> hide sel cartoons
Drag select of 5 residues
> hide sel cartoons
Drag select of 475 residues, 1 pseudobonds
> hide sel cartoons
Drag select of 7 residues
> hide sel cartoons
Drag select of 4 residues
Drag select of 1 residues
> hide sel cartoons
Drag select of 1 residues
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> select clear
Drag select of 735 residues
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Jian_PflB_model.pdb selectedOnly true
> close #169
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Jian_PflB_model.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/July_2024/Jian_PflB_model.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
14 messages similar to the above omitted
Chain information for Jian_PflB_model.pdb #169
---
Chain | Description
B | No description available
> hide #169 models
> show #166.1 models
> show #169 models
> hide #169 models
> show #169 models
> hide #169 models
Drag select of 459 residues
> hide sel cartoons
Drag select of 3 residues
> hide sel cartoons
Drag select of 3 residues
> hide sel cartoons
Drag select of 287 residues
> hide sel cartoons
Drag select of 39 residues
> hide sel cartoons
> show sel cartoons
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Jian_PflA_model.pdb selectedOnly true
> show #166.3 models
> show #166.2 models
> hide #166.2 models
> show #166.2 models
> hide #166.2 models
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Jian_PflA_model.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/July_2024/Jian_PflA_model.pdb
---
warnings | End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
Chain information for Jian_PflA_model.pdb #170
---
Chain | Description
A | No description available
> hide #!166 models
> hide #166.1 models
> hide #166.3 models
> select add #166
55466 atoms, 56638 bonds, 6819 residues, 4 models selected
> select subtract #166.1
29762 atoms, 30442 bonds, 3655 residues, 3 models selected
> select add #166.1
55466 atoms, 56638 bonds, 6819 residues, 4 models selected
> select subtract #166
Nothing selected
> show #169 models
> color #169 #14258cff
> color #169 #2443ffff
> color #170 #96a134ff
> color #170 #895ea1ff
> color #170 #6728a1ff
> color #170 #a33fffff
> show #!113 models
> ui tool show "Side View"
[Repeated 1 time(s)]
> view orient
> show #!167 models
> hide #!167 models
> show #!38 models
> show #!39 models
> hide #!39 models
> show #!57 models
> show #!56 models
> hide #!56 models
> show #!56 models
> show #!55 models
> hide #!55 models
> hide #!56 models
> hide #!57 models
> show #!57 models
> hide #!57 models
> view orient
> sym #169 C18 copies true center #113
Made 18 copies for Jian_PflB_model.pdb symmetry C18
> sym #170 C18 copies true center #113
Made 18 copies for Jian_PflA_model.pdb symmetry C18
> show #98 models
> hide #98 models
> show #!100 models
> hide #!100 models
> show #!52 models
> show #!53 models
> show #!65 models
> show #!67 models
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/HP_Model_FlgY_Ver4-fitting2.cxs includeMaps true
> hide #!53 models
> show #!53 models
> color #53 #92aa93ff models
> show #!63 models
> color #63 #727272ff models
> show #64 models
> hide #64 models
> hide #!65 models
> show #!65 models
> hide #!67 models
> show #!67 models
> hide #!52 models
> show #!52 models
> color #52 #727272ff models
> hide #!65 models
> show #!65 models
> color #65 #727272ff models
> color #67 #727272ff models
> hide #!67 models
> hide #!65 models
> hide #!63 models
> hide #!52 models
> show #!52 models
> hide #!52 models
> hide #!53 models
> show #!1 models
> show #!2 models
> show #!3 models
> show #!4 models
> show #!5 models
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> show #!46 models
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> show #!50 models
> show #!51 models
> show #!54 models
> show #!55 models
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> show #!57 models
> show #!58 models
> hide #!58 models
> show #!71 models
> hide #!71 models
> show #!75 models
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> show #!101 models
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> hide #!124 models
> show #!130 models
> show #!129 models
> show #!128 models
> show #!131 models
> show #!132 models
> show #!133 models
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> show #!135 models
> show #!136 models
> show #!137 models
> show #!138 models
> hide #!138 models
> show #!356 models
> hide #!356 models
> show #!363 models
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> show #!367 models
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> show #!377 models
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> show #!389 models
> show #!387 models
> show #!390 models
> show #!391 models
> show #!415 models
> show #!416 models
> show #!316 models
> show #!313 models
> hide #!316 models
> show #!316 models
> view Tilt
> show #!356 models
> hide #!356 models
> show #!357 models
> show #!358 models
> show #!359 models
> show #!360 models
> show #!361 models
> hide #!371 models
> hide #!370 models
> hide #!369 models
> hide #!368 models
> show #!377 models
> hide #!377 models
> show #!383 models
> show #!382 models
> show #!381 models
> show #!380 models
> show #!379 models
> show #!378 models
> show #!377 models
> show #!418 models
> show #!417 models
> hide #!418 models
> show #!418 models
> hide #!417 models
> hide #!416 models
> hide #!415 models
> hide #!391 models
> hide #!390 models
> hide #!418 models
> hide #!377 models
> show #!418 models
> hide #!418 models
> hide #!378 models
> hide #!51 models
> show #!51 models
> show #!71 models
> show #!73 models
> show #!74 models
> show #!58 models
> show #!59 models
> hide #!84 models
> hide #!83 models
> show #!85 models
> hide #!82 models
> hide #!81 models
> hide #!85 models
> hide #!80 models
> hide #!357 models
> show #!357 models
> hide #!367 models
> hide #!357 models
> show #!357 models
> hide #!379 models
> show #!379 models
> hide #!389 models
> show #!389 models
> show #!367 models
> show #!138 models
> hide #!138 models
> hide #!137 models
> hide #!136 models
> hide #!135 models
> hide #!134 models
> show #!80 models
> show #!127 models
> show #!126 models
> show #!125 models
> show #!124 models
> show #!134 models
> hide #!134 models
> show #!141 models
> show #!16 models
> show #!312 models
> show #!513 models
> show #!514 models
> show #!177 models
> show #!479 models
> show #!481 models
> show #!484 models
> show #!94 models
> show #!93 models
> hide #!93 models
> ui tool show "Surface Color"
> volume copy #93
Opened FlgY-with-joints.mrc copy as #173, grid size 220,220,220, pixel 4.3,
shown at step 1, values float32
> hide #!173 models
> show #!93 models
> hide #!93 models
> show #!173 models
> color #173 #72727233 models
> show #!177.24 models
> show #!177.25 models
> show #!177.26 models
> show #!177.27 models
> show #!177.28 models
> show #!177.29 models
> show #!177.30 models
> show #!177.31 models
> show #!177.32 models
> show #!177.33 models
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/HP_Model_FlgY_Ver4-fitting3.cxs includeMaps true
——— End of log from Wed Jul 3 12:25:35 2024 ———
opened ChimeraX session
> hide #!16 models
> hide #!141 models
> hide #!124-133 models
> open /Users/shoichi/Desktop/hp_model/Hp-C1-4.296A-msk.mrc
Opened Hp-C1-4.296A-msk.mrc as #174, grid size 220,220,220, pixel 4.3, shown
at level 0.151, step 1, values float32
> hide #!174 models
> hide #!316 models
> hide #!312 models
> hide #!513 models
> hide #!514 models
> view orient
> open /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/Chimera-
> Grant_2024/For_Docking_figures.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/Chimera-
Grant_2024/For_Docking_figures.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 SER A 85 VAL A 87 1 3
Start residue of secondary structure not found: HELIX 2 2 ARG A 88 LYS A 107 1
20
Start residue of secondary structure not found: HELIX 3 3 ALA A 128 ALA A 130
1 3
Start residue of secondary structure not found: HELIX 4 4 LEU A 141 ALA A 152
1 12
Start residue of secondary structure not found: HELIX 5 5 PHE A 154 PHE A 157
1 4
1651 messages similar to the above omitted
Chain information for For_Docking_figures.pdb
---
Chain | Description
175.3/? | No description available
175.14/? 175.15/? 175.16/? 175.17/? 175.18/? 175.19/? 175.20/? 175.21/? 175.22/? 175.23/? | No description available
175.1/A 175.2/A | No description available
175.24/A 175.25/A 175.26/A 175.27/A 175.28/A 175.29/A 175.30/A 175.31/A 175.32/A 175.33/A 175.34/A 175.35/A 175.36/A 175.37/A 175.38/A 175.39/A 175.40/A 175.41/A 175.42/A 175.43/A 175.44/A | No description available
175.45/A 175.46/A 175.47/A 175.48/A 175.49/A 175.50/A 175.51/A 175.52/A 175.53/A 175.54/A 175.55/A 175.56/A 175.57/A 175.58/A 175.59/A 175.60/A 175.61/A 175.62/A 175.63/A 175.64/A 175.65/A | No description available
175.66/A 175.67/A 175.68/A 175.69/A 175.70/A 175.71/A 175.72/A 175.73/A 175.74/A 175.75/A 175.76/A 175.77/A 175.78/A 175.79/A 175.80/A 175.81/A 175.82/A 175.83/A 175.84/A 175.85/A 175.86/A 175.87/A 175.88/A 175.89/A 175.90/A 175.91/A 175.92/A 175.93/A 175.94/A 175.95/A 175.96/A 175.97/A 175.98/A 175.99/A 175.100/A 175.101/A 175.102/A 175.103/A 175.104/A | No description available
175.105/A 175.106/A 175.107/A 175.108/A 175.109/A 175.110/A 175.111/A 175.112/A 175.113/A 175.114/A 175.115/A 175.116/A 175.117/A 175.118/A 175.119/A 175.120/A 175.121/A 175.122/A | No description available
175.4/B 175.5/B 175.6/B 175.7/B 175.8/B 175.9/B 175.10/B 175.11/B 175.12/B 175.13/B | No description available
175.105/B 175.106/B 175.107/B 175.108/B 175.109/B 175.110/B 175.111/B 175.112/B 175.113/B 175.114/B 175.115/B 175.116/B 175.117/B 175.118/B 175.119/B 175.120/B 175.121/B 175.122/B | No description available
175.123/B 175.124/B 175.125/B 175.126/B 175.127/B 175.128/B 175.129/B 175.130/B 175.131/B 175.132/B 175.133/B 175.134/B 175.135/B 175.136/B 175.137/B 175.138/B 175.139/B 175.140/B | No description available
175.123/D 175.124/D 175.125/D 175.126/D 175.127/D 175.128/D 175.129/D 175.130/D 175.131/D 175.132/D 175.133/D 175.134/D 175.135/D 175.136/D 175.137/D 175.138/D 175.139/D 175.140/D | No description available
> select add #175
395310 atoms, 402560 bonds, 48837 residues, 141 models selected
> volume #113 region 0,0,0,239,239,212
> ui mousemode right "translate selected models"
> view matrix models #175,1,0,0,526.67,0,1,0,483.14,0,0,1,0
> view matrix models #175,1,0,0,460.07,0,1,0,515.34,0,0,1,518.2
> view matrix models #175,1,0,0,578.54,0,1,0,552.18,0,0,1,512.96
> 30\. combine #175 modelId #176 name Combine_New_model
Unknown command: 30. combine #175 modelId #176 name Combine_New_model
> combine #175 modelId #176 name Combine_New_model
Remapping chain ID 'A' in For_Docking_figures.pdb #175.2 to 'B'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.4 to 'C'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.5 to 'D'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.6 to 'E'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.7 to 'F'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.8 to 'G'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.9 to 'H'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.10 to 'I'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.11 to 'J'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.12 to 'K'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.13 to 'L'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.14 to 'M'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.15 to 'N'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.16 to 'O'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.17 to 'P'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.18 to 'Q'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.19 to 'R'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.20 to 'S'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.21 to 'T'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.22 to 'U'
Remapping chain ID ' ' in For_Docking_figures.pdb #175.23 to 'V'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.24 to 'W'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.25 to 'X'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.26 to 'Y'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.27 to 'Z'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.28 to 'a'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.29 to 'b'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.30 to 'c'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.31 to 'd'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.32 to 'e'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.33 to 'f'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.34 to 'g'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.35 to 'h'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.36 to 'i'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.37 to 'j'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.38 to 'k'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.39 to 'l'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.40 to 'm'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.41 to 'n'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.42 to 'o'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.43 to 'p'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.44 to 'q'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.45 to 'r'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.46 to 's'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.47 to 't'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.48 to 'u'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.49 to 'v'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.50 to 'w'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.51 to 'x'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.52 to 'y'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.53 to 'z'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.54 to '1'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.55 to '2'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.56 to '3'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.57 to '4'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.58 to '5'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.59 to '6'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.60 to '7'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.61 to '8'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.62 to '9'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.63 to '0'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.64 to 'AA'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.65 to 'AB'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.66 to 'AC'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.67 to 'AD'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.68 to 'AE'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.69 to 'AF'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.70 to 'AG'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.71 to 'AH'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.72 to 'AI'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.73 to 'AJ'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.74 to 'AK'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.75 to 'AL'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.76 to 'AM'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.77 to 'AN'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.78 to 'AO'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.79 to 'AP'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.80 to 'AQ'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.81 to 'AR'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.82 to 'AS'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.83 to 'AT'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.84 to 'AU'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.85 to 'AV'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.86 to 'AW'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.87 to 'AX'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.88 to 'AY'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.89 to 'AZ'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.90 to 'Aa'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.91 to 'Ab'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.92 to 'Ac'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.93 to 'Ad'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.94 to 'Ae'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.95 to 'Af'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.96 to 'Ag'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.97 to 'Ah'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.98 to 'Ai'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.99 to 'Aj'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.100 to 'Ak'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.101 to 'Al'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.102 to 'Am'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.103 to 'An'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.104 to 'Ao'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.105 to 'Ap'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.105 to 'Aq'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.106 to 'Ar'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.106 to 'As'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.107 to 'At'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.107 to 'Au'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.108 to 'Av'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.108 to 'Aw'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.109 to 'Ax'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.109 to 'Ay'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.110 to 'Az'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.110 to 'A1'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.111 to 'A2'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.111 to 'A3'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.112 to 'A4'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.112 to 'A5'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.113 to 'A6'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.113 to 'A7'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.114 to 'A8'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.114 to 'A9'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.115 to 'A0'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.115 to 'BA'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.116 to 'BB'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.116 to 'BC'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.117 to 'BD'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.117 to 'BE'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.118 to 'BF'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.118 to 'BG'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.119 to 'BH'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.119 to 'BI'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.120 to 'BJ'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.120 to 'BK'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.121 to 'BL'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.121 to 'BM'
Remapping chain ID 'A' in For_Docking_figures.pdb #175.122 to 'BN'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.122 to 'BO'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.123 to 'BP'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.123 to 'BQ'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.124 to 'BR'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.124 to 'BS'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.125 to 'BT'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.125 to 'BU'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.126 to 'BV'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.126 to 'BW'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.127 to 'BX'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.127 to 'BY'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.128 to 'BZ'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.128 to 'Ba'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.129 to 'Bb'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.129 to 'Bc'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.130 to 'Bd'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.130 to 'Be'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.131 to 'Bf'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.131 to 'Bg'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.132 to 'Bh'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.132 to 'Bi'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.133 to 'Bj'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.133 to 'Bk'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.134 to 'Bl'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.134 to 'Bm'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.135 to 'Bn'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.135 to 'Bo'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.136 to 'Bp'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.136 to 'Bq'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.137 to 'Br'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.137 to 'Bs'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.138 to 'Bt'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.138 to 'Bu'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.139 to 'Bv'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.139 to 'Bw'
Remapping chain ID 'B' in For_Docking_figures.pdb #175.140 to 'Bx'
Remapping chain ID 'D' in For_Docking_figures.pdb #175.140 to 'By'
> select subtract #175
Nothing selected
> show #!174 models
> volume #174 level 0.1523
> volume #174 level 0.08685
> ui tool show "Fit in Map"
> show #!312 models
> select add #175
395310 atoms, 402560 bonds, 48837 residues, 141 models selected
> select subtract #175
Nothing selected
> select add #174
2 models selected
> view matrix models #174,1,0,0,0.072823,0,1,0,78.326,0,0,1,162.42
> view matrix models #174,1,0,0,-8.7049,0,1,0,56.653,0,0,1,90.222
> fitmap #174 inMap #312
Fit map Hp-C1-4.296A-msk.mrc in map Disk.mrc gaussian using 798797 points
correlation = 0.3352, correlation about mean = 0.07597, overlap = 1494
steps = 152, shift = 78.7, angle = 1.14 degrees
Position of Hp-C1-4.296A-msk.mrc (#174) relative to Disk.mrc gaussian (#312)
coordinates:
Matrix rotation and translation
0.99980230 -0.00820191 -0.01811340 77.55060812
0.00820599 0.99996632 0.00015127 61.36433548
0.01811155 -0.00029987 0.99983593 54.05841474
Axis -0.01134367 -0.91085632 0.41256768
Axis point -3731.01509676 0.00000000 4300.53006829
Rotation angle (degrees) 1.13940762
Shift along axis -34.47104627
> fitmap #174 inMap #312
Fit map Hp-C1-4.296A-msk.mrc in map Disk.mrc gaussian using 798797 points
correlation = 0.3352, correlation about mean = 0.07599, overlap = 1494
steps = 28, shift = 0.0512, angle = 0.0117 degrees
Position of Hp-C1-4.296A-msk.mrc (#174) relative to Disk.mrc gaussian (#312)
coordinates:
Matrix rotation and translation
0.99979844 -0.00821821 -0.01831750 77.67589828
0.00822244 0.99996618 0.00015555 61.35122116
0.01831560 -0.00030613 0.99983221 53.91758258
Axis -0.01149711 -0.91227308 0.40942111
Axis point -3682.40718088 0.00000000 4259.21426235
Rotation angle (degrees) 1.15045768
Shift along axis -34.78711951
> fitmap #174 inMap #312
Fit map Hp-C1-4.296A-msk.mrc in map Disk.mrc gaussian using 798797 points
correlation = 0.3353, correlation about mean = 0.07593, overlap = 1494
steps = 28, shift = 0.122, angle = 0.0146 degrees
Position of Hp-C1-4.296A-msk.mrc (#174) relative to Disk.mrc gaussian (#312)
coordinates:
Matrix rotation and translation
0.99980299 -0.00822769 -0.01806347 77.54094845
0.00823180 0.99996611 0.00015318 61.35065615
0.01806160 -0.00030185 0.99983683 54.15495732
Axis -0.01146159 -0.90993615 0.41458996
Axis point -3745.84782353 0.00000000 4311.80792092
Rotation angle (degrees) 1.13741511
Shift along axis -34.26182086
> fitmap #176 inMap #174
Fit molecule Combine_New_model (#176) to map Hp-C1-4.296A-msk.mrc (#174) using
395310 atoms
average map value = 0.09572, steps = 96
shifted from previous position = 46.1
rotated from previous position = 0.823 degrees
atoms outside contour = 178169, contour level = 0.08685
Position of Combine_New_model (#176) relative to Hp-C1-4.296A-msk.mrc (#174)
coordinates:
Matrix rotation and translation
0.99998075 0.00443572 0.00433884 520.90679638
-0.00444293 0.99998876 0.00165383 478.50780087
-0.00433146 -0.00167307 0.99998922 405.45906246
Axis -0.25894189 0.67483291 -0.69104966
Axis point 121981.64620852 -111524.86465754 0.00000000
Rotation angle (degrees) 0.36807274
Shift along axis -92.16412549
> fitmap #176 inMap #174
Fit molecule Combine_New_model (#176) to map Hp-C1-4.296A-msk.mrc (#174) using
395310 atoms
average map value = 0.09572, steps = 40
shifted from previous position = 0.0803
rotated from previous position = 0.0122 degrees
atoms outside contour = 178155, contour level = 0.08685
Position of Combine_New_model (#176) relative to Hp-C1-4.296A-msk.mrc (#174)
coordinates:
Matrix rotation and translation
0.99997948 0.00462576 0.00443258 520.90127855
-0.00463307 0.99998792 0.00163973 478.50232304
-0.00442494 -0.00166024 0.99998883 405.37608217
Axis -0.24940332 0.66942879 -0.69975930
Axis point 117033.40686824 -107061.39533734 0.00000000
Rotation angle (degrees) 0.37905615
Shift along axis -93.25696027
> fitmap #176 inMap #174
Fit molecule Combine_New_model (#176) to map Hp-C1-4.296A-msk.mrc (#174) using
395310 atoms
average map value = 0.09572, steps = 44
shifted from previous position = 0.0687
rotated from previous position = 0.00932 degrees
atoms outside contour = 178144, contour level = 0.08685
Position of Combine_New_model (#176) relative to Hp-C1-4.296A-msk.mrc (#174)
coordinates:
Matrix rotation and translation
0.99998031 0.00446462 0.00441086 520.90299977
-0.00447191 0.99998865 0.00164422 478.50719664
-0.00440347 -0.00166391 0.99998892 405.44544485
Axis -0.25485099 0.67903495 -0.68844935
Axis point 120489.11788490 -111178.18270117 0.00000000
Rotation angle (degrees) 0.37187148
Shift along axis -86.95819019
> fitmap #176 inMap #174
Fit molecule Combine_New_model (#176) to map Hp-C1-4.296A-msk.mrc (#174) using
395310 atoms
average map value = 0.09572, steps = 40
shifted from previous position = 0.0638
rotated from previous position = 0.00989 degrees
atoms outside contour = 178146, contour level = 0.08685
Position of Combine_New_model (#176) relative to Hp-C1-4.296A-msk.mrc (#174)
coordinates:
Matrix rotation and translation
0.99997942 0.00463559 0.00443440 520.90121078
-0.00464290 0.99998788 0.00163952 478.50175106
-0.00442674 -0.00166008 0.99998882 405.38098423
Axis -0.24907252 0.66888933 -0.70039271
Axis point 116825.10518125 -106822.12816924 0.00000000
Rotation angle (degrees) 0.37951703
Shift along axis -93.60334629
> fitmap #176 inMap #174
Fit molecule Combine_New_model (#176) to map Hp-C1-4.296A-msk.mrc (#174) using
395310 atoms
average map value = 0.09572, steps = 44
shifted from previous position = 0.0736
rotated from previous position = 0.00998 degrees
atoms outside contour = 178168, contour level = 0.08685
Position of Combine_New_model (#176) relative to Hp-C1-4.296A-msk.mrc (#174)
coordinates:
Matrix rotation and translation
0.99998033 0.00446360 0.00440736 520.90087514
-0.00447089 0.99998865 0.00164442 478.50729397
-0.00439997 -0.00166409 0.99998894 405.45534942
Axis -0.25499909 0.67881319 -0.68861318
Axis point 120551.28046840 -111185.93542566 0.00000000
Rotation angle (degrees) 0.37169772
Shift along axis -87.21408233
> fitmap #176 inMap #174
Fit molecule Combine_New_model (#176) to map Hp-C1-4.296A-msk.mrc (#174) using
395310 atoms
average map value = 0.09572, steps = 48
shifted from previous position = 0.00931
rotated from previous position = 0.000899 degrees
atoms outside contour = 178156, contour level = 0.08685
Position of Combine_New_model (#176) relative to Hp-C1-4.296A-msk.mrc (#174)
coordinates:
Matrix rotation and translation
0.99998039 0.00444794 0.00440841 520.90425461
-0.00445523 0.99998872 0.00164477 478.50771602
-0.00440104 -0.00166438 0.99998893 405.44664647
Axis -0.25544034 0.68002189 -0.68725575
Axis point 120860.06047723 -111621.86479394 0.00000000
Rotation angle (degrees) 0.37112635
Shift along axis -86.30977553
> select subtract #174
Nothing selected
> hide #!174 models
> hide #176 models
> show #176 models
> hide #176 models
> show #176 models
> hide #176 models
> hide #!175 models
> show #176 models
> show #!175 models
> hide #!175 models
> hide #!173 models
> hide #!484 models
> show #!494 models
> hide #!494 models
> hide #!94 models
> hide #!171 models
> hide #!172 models
> hide #!177 models
> hide #!1-3620 models
> show #!174 models
> hide #!174 models
> show #!175 models
> hide #!175 models
> show #176 models
> show #!175 models
> hide #!175 models
> save /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure.cxs includeMaps true
——— End of log from Fri Jul 5 13:48:53 2024 ———
opened ChimeraX session
> show #!479 models
> view orient
> show #!174 models
> ui tool show "Fit in Map"
> hide #176 models
> hide #!174 models
> open /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_MotBpg.pdb
> /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_Cage.pdb
> /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_MotA.pdb
> /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_FliL.pdb
> /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_FliF.pdb
> /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_PflB.pdb
> /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_PflA.pdb
> /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_FlgY.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_MotBpg.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
30 messages similar to the above omitted
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_Cage.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
35 messages similar to the above omitted
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
684 messages similar to the above omitted
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
7 messages similar to the above omitted
End residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B 133
0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
785 messages similar to the above omitted
End residue of secondary structure not found: HELIX 9 9 LEU B 136 LYS B 138 1
3
Start residue of secondary structure not found: HELIX 10 10 THR B 139 TYR B
149 1 11
Start residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93
0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
2 messages similar to the above omitted
End residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B 156
0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1
77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
741 messages similar to the above omitted
End residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121 1
3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
Start residue of secondary structure not found: HELIX 9 9 LEU B 136 LYS B 138
1 3
Start residue of secondary structure not found: HELIX 10 10 THR B 139 TYR B
149 1 11
1 messages similar to the above omitted
End residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104 0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
1894 messages similar to the above omitted
End residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104 0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
31 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
1561 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
51 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
564 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
70 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
355 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
15 messages similar to the above omitted
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
13 messages similar to the above omitted
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
420 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
13 messages similar to the above omitted
End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0
Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
0
Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
131 0
Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
144 0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
2542 messages similar to the above omitted
End residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118 1
12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
Start residue of secondary structure not found: HELIX 6 6 ASP B 10 PHE B 41 1
32
Start residue of secondary structure not found: HELIX 7 7 LEU B 42 LEU B 87 1
46
Start residue of secondary structure not found: HELIX 8 8 ASP B 93 CYS B 107 1
15
4191 messages similar to the above omitted
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_MotA.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
394 messages similar to the above omitted
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_FliL.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
375 messages similar to the above omitted
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_FliF.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
1876 messages similar to the above omitted
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_PflB.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
337 messages similar to the above omitted
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_PflA.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
679 messages similar to the above omitted
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/New_FlgY.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
983 messages similar to the above omitted
Chain information for New_MotBpg.pdb
---
Chain | Description
178.1/A 178.2/B | No description available
Chain information for New_Cage.pdb
---
Chain | Description
179.527/? 179.692/? | No description available
179.538/? 179.539/? 179.540/? 179.541/? 179.542/? 179.543/? 179.544/? 179.545/? 179.546/? 179.547/? 179.884/M 179.885/N 179.886/O 179.887/P 179.888/Q 179.889/R 179.890/S 179.891/T 179.892/U 179.893/V | No description available
179.176/0 179.176/1 179.176/2 179.176/3 179.176/4 | No description available
179.693/0 179.694/1 179.695/2 179.696/3 179.697/4 179.698/5 179.699/6 179.700/7 179.701/8 179.702/9 179.300/A 179.301/A 179.302/A 179.303/A 179.304/A 179.305/A 179.306/A 179.307/A 179.308/A 179.309/A 179.310/A 179.311/A 179.312/A 179.313/A 179.314/A 179.315/A 179.316/A 179.317/A 179.318/A 179.319/A 179.320/A 179.569/A 179.570/A 179.571/A 179.572/A 179.573/A 179.574/A 179.575/A 179.576/A 179.577/A 179.578/A 179.579/A 179.580/A 179.581/A 179.582/A 179.583/A 179.584/A 179.585/A 179.586/A 179.587/A 179.588/A 179.589/A 179.714/AA 179.715/AB 179.915/r 179.916/s 179.917/t 179.918/u 179.919/v 179.920/w 179.921/x 179.922/y 179.923/z | No description available
179.176/5 179.176/6 179.176/7 179.176/8 179.176/9 | No description available
179.1/A 179.2/A 179.3/A 179.4/A 179.5/A 179.6/A 179.7/A 179.8/A 179.9/A 179.10/A 179.11/A 179.12/A 179.13/A 179.14/A 179.15/A 179.16/A 179.17/A 179.18/A 179.19/A 179.20/A 179.21/A 179.22/A 179.23/A 179.24/A 179.25/A 179.26/A 179.27/A 179.28/A 179.29/A 179.30/A 179.31/A 179.32/A 179.33/A 179.34/A 179.35/A 179.36/A 179.37/A 179.38/A 179.629/A 179.755/Ap 179.756/Aq 179.629/B | No description available
179.39/A 179.42/A 179.43/A 179.44/A 179.45/A 179.46/A 179.47/A 179.48/A 179.49/A 179.50/A 179.51/A 179.52/A 179.53/A 179.54/A 179.55/A 179.56/A 179.57/A 179.58/A 179.59/A 179.39/B 179.42/B 179.43/B 179.44/B 179.45/B 179.46/B 179.47/B 179.48/B 179.49/B 179.50/B 179.51/B 179.52/B 179.53/B 179.54/B 179.55/B 179.56/B 179.57/B 179.58/B 179.59/B 179.39/C 179.42/C 179.43/C 179.44/C 179.45/C 179.46/C 179.47/C 179.48/C 179.49/C 179.50/C 179.51/C 179.52/C 179.53/C 179.54/C 179.55/C 179.56/C 179.57/C 179.58/C 179.59/C 179.39/D 179.42/D 179.43/D 179.44/D 179.45/D 179.46/D 179.47/D 179.48/D 179.49/D 179.50/D 179.51/D 179.52/D 179.53/D 179.54/D 179.55/D 179.56/D 179.57/D 179.58/D 179.59/D 179.39/E 179.42/E 179.43/E 179.44/E 179.45/E 179.46/E 179.47/E 179.48/E 179.49/E 179.50/E 179.51/E 179.52/E 179.53/E 179.54/E 179.55/E 179.56/E 179.57/E 179.58/E 179.59/E | No description available
179.41/A 179.78/A 179.79/A 179.80/A 179.81/A 179.82/A 179.83/A 179.84/A 179.85/A 179.86/A 179.87/A 179.88/A 179.89/A 179.90/A 179.91/A 179.92/A 179.93/A 179.94/A 179.95/A 179.41/B 179.78/B 179.79/B 179.80/B 179.81/B 179.82/B 179.83/B 179.84/B 179.85/B 179.86/B 179.87/B 179.88/B 179.89/B 179.90/B 179.91/B 179.92/B 179.93/B 179.94/B 179.95/B 179.41/D 179.78/D 179.79/D 179.80/D 179.81/D 179.82/D 179.83/D 179.84/D 179.85/D 179.86/D 179.87/D 179.88/D 179.89/D 179.90/D 179.91/D 179.92/D 179.93/D 179.94/D 179.95/D 179.41/E 179.78/E 179.79/E 179.80/E 179.81/E 179.82/E 179.83/E 179.84/E 179.85/E 179.86/E 179.87/E 179.88/E 179.89/E 179.90/E 179.91/E 179.92/E 179.93/E 179.94/E 179.95/E 179.41/H 179.78/H 179.79/H 179.80/H 179.81/H 179.82/H 179.83/H 179.84/H 179.85/H 179.86/H 179.87/H 179.88/H 179.89/H 179.90/H 179.91/H 179.92/H 179.93/H 179.94/H 179.95/H 179.41/L 179.78/L 179.79/L 179.80/L 179.81/L 179.82/L 179.83/L 179.84/L 179.85/L 179.86/L 179.87/L 179.88/L 179.89/L 179.90/L 179.91/L 179.92/L 179.93/L 179.94/L 179.95/L | No description available
179.96/A 179.96/B 179.96/C 179.96/D 179.96/E 179.96/F 179.96/G 179.96/H 179.96/I 179.96/J 179.96/K 179.96/L 179.97/L 179.98/L 179.99/L 179.100/L 179.101/L 179.102/L 179.103/L 179.104/L 179.105/L 179.106/L 179.107/L 179.108/L 179.109/L 179.110/L 179.111/L 179.112/L 179.113/L 179.114/L 179.115/L 179.116/L 179.117/L 179.118/L 179.119/L 179.120/L 179.121/L 179.122/L 179.123/L 179.124/L 179.125/L 179.126/L 179.127/L 179.128/L 179.129/L 179.130/L 179.131/L 179.132/L 179.133/L 179.134/L 179.135/L 179.136/L 179.96/M 179.96/N 179.96/O 179.96/P 179.96/Q 179.96/R 179.96/S 179.96/T 179.96/U 179.96/V 179.96/W 179.96/X 179.96/Y 179.96/Z 179.96/a 179.96/b 179.96/c 179.96/d 179.96/e 179.96/f 179.96/g 179.96/h | No description available
179.137/A 179.137/B 179.137/C 179.137/D 179.137/E 179.137/F 179.137/G 179.137/H 179.137/I 179.137/J 179.137/K 179.137/L 179.137/M 179.137/N 179.137/O 179.137/P 179.137/Q 179.137/R 179.137/S 179.137/T 179.137/V 179.137/W | No description available
179.138/A 179.139/A 179.140/A 179.141/A 179.142/A 179.143/A 179.144/A 179.145/A 179.146/A 179.147/A 179.148/A 179.149/A 179.150/A 179.151/A 179.152/A 179.153/A 179.154/A 179.155/A 179.156/A 179.157/A 179.158/A 179.159/A 179.160/A 179.161/A 179.162/A 179.163/A 179.164/A 179.165/A 179.166/A 179.167/A 179.168/A 179.169/A 179.170/A 179.171/A 179.172/A 179.173/A 179.174/A 179.175/A | No description available
179.176/A 179.176/B 179.176/C 179.176/D 179.176/E 179.176/F 179.176/G 179.176/H 179.176/I 179.176/J 179.176/K 179.176/M | No description available
179.177/A 179.177/B 179.177/C 179.177/D 179.177/E 179.177/F 179.177/G 179.177/H 179.177/I 179.177/J 179.177/K 179.177/L 179.177/M 179.177/N 179.177/O 179.177/P 179.177/Q 179.177/R 179.177/S 179.177/T 179.177/U 179.177/V 179.177/W 179.177/X 179.177/Y 179.177/Z | No description available
179.178/A 179.179/A 179.180/A 179.181/A 179.182/A 179.183/A 179.184/A 179.185/A 179.186/A 179.187/A 179.188/A 179.189/A 179.190/A 179.191/A 179.192/A 179.193/A 179.194/A 179.195/A 179.196/A | No description available
179.198/A 179.200/A 179.202/A 179.204/A 179.206/A 179.208/A 179.210/A 179.212/A 179.214/A 179.216/A 179.218/A 179.220/A 179.222/A 179.224/A 179.226/A 179.228/A 179.230/A 179.232/A 179.234/A 179.236/A 179.238/A 179.240/A 179.242/A 179.244/A 179.246/A 179.248/A 179.250/A 179.252/A 179.254/A 179.256/A 179.258/A 179.260/A 179.262/A 179.264/A 179.266/A 179.268/A 179.270/A 179.272/A 179.274/A 179.276/A | No description available
179.277/A | No description available
179.279/A 179.280/A 179.281/A 179.282/A 179.283/A 179.284/A 179.285/A 179.286/A 179.287/A 179.288/A 179.289/A 179.290/A 179.291/A 179.292/A 179.293/A 179.294/A 179.295/A 179.296/A 179.297/A 179.298/A 179.299/A 179.548/A 179.549/A 179.550/A 179.551/A 179.552/A 179.553/A 179.554/A 179.555/A 179.556/A 179.557/A 179.558/A 179.559/A 179.560/A 179.561/A 179.562/A 179.563/A 179.564/A 179.565/A 179.566/A 179.567/A 179.568/A 179.894/W 179.895/X 179.896/Y 179.897/Z 179.898/a 179.899/b 179.900/c 179.901/d 179.902/e 179.903/f 179.904/g 179.905/h 179.906/i 179.907/j 179.908/k 179.909/l 179.910/m 179.911/n 179.912/o 179.913/p 179.914/q | No description available
179.321/A 179.322/A 179.323/A 179.324/A 179.325/A 179.326/A 179.327/A 179.328/A 179.329/A 179.330/A 179.331/A 179.332/A 179.333/A 179.334/A 179.335/A 179.336/A 179.337/A 179.338/A 179.339/A 179.340/A 179.341/A 179.342/A 179.343/A 179.344/A 179.345/A 179.346/A 179.347/A 179.348/A 179.349/A 179.350/A 179.351/A 179.352/A 179.353/A 179.354/A 179.355/A 179.356/A 179.357/A 179.358/A 179.359/A 179.590/A 179.591/A 179.592/A 179.593/A 179.594/A 179.595/A 179.596/A 179.597/A 179.598/A 179.599/A 179.600/A 179.601/A 179.602/A 179.603/A 179.604/A 179.605/A 179.606/A 179.607/A 179.608/A 179.609/A 179.610/A 179.611/A 179.612/A 179.613/A 179.614/A 179.615/A 179.616/A 179.617/A 179.618/A 179.619/A 179.620/A 179.621/A 179.622/A 179.623/A 179.624/A 179.625/A 179.626/A 179.627/A 179.628/A 179.716/AC 179.717/AD 179.718/AE 179.719/AF 179.720/AG 179.721/AH 179.722/AI 179.723/AJ 179.724/AK 179.725/AL 179.726/AM 179.727/AN 179.728/AO 179.729/AP 179.730/AQ 179.731/AR 179.732/AS 179.733/AT 179.734/AU 179.735/AV 179.736/AW 179.737/AX 179.738/AY 179.739/AZ 179.740/Aa 179.741/Ab 179.742/Ac 179.743/Ad 179.744/Ae 179.745/Af 179.746/Ag 179.747/Ah 179.748/Ai 179.749/Aj 179.750/Ak 179.751/Al 179.752/Am 179.753/An 179.754/Ao | No description available
179.360/A 179.360/B 179.360/C 179.360/D 179.360/E 179.360/F 179.360/G 179.360/H 179.360/I | No description available
179.361/A 179.362/A 179.363/A 179.364/A 179.365/A 179.366/A 179.367/A 179.368/A 179.369/A 179.370/A 179.371/A 179.372/A 179.373/A 179.374/A 179.375/A 179.376/A 179.377/A 179.378/A 179.379/A 179.380/A 179.361/B 179.362/B 179.363/B 179.364/B 179.365/B 179.366/B 179.367/B 179.368/B 179.369/B 179.370/B 179.371/B 179.372/B 179.373/B 179.374/B 179.375/B 179.376/B 179.377/B 179.378/B 179.379/B 179.380/B | No description available
179.381/A 179.386/A 179.387/A 179.392/A 179.393/A 179.398/A 179.399/A 179.402/A 179.405/A 179.408/A 179.411/A 179.414/A 179.417/A 179.420/A 179.423/A 179.426/A 179.429/A 179.432/A 179.435/A 179.438/A 179.441/A 179.444/A 179.447/A 179.450/A 179.453/A | No description available
179.382/A 179.388/A 179.394/A 179.400/A 179.403/A 179.406/A 179.409/A 179.412/A 179.415/A 179.418/A 179.421/A 179.424/A 179.427/A 179.430/A 179.433/A 179.436/A 179.439/A 179.442/A 179.445/A 179.448/A 179.451/A 179.454/A | No description available
179.385/A 179.391/A 179.397/A | No description available
179.456/A 179.458/A 179.460/A 179.462/A 179.464/A 179.466/A 179.468/A 179.470/A 179.472/A 179.474/A 179.476/A 179.478/A 179.480/A 179.482/A 179.457/B 179.459/B 179.461/B 179.463/B 179.465/B 179.467/B 179.469/B 179.471/B 179.473/B 179.475/B 179.477/B 179.479/B 179.481/B 179.483/B | No description available
179.484/A | No description available
179.488/A 179.507/A 179.508/A 179.509/A 179.510/A 179.511/A 179.512/A 179.513/A 179.514/A 179.515/A 179.516/A 179.517/A 179.518/A 179.519/A 179.520/A 179.521/A 179.522/A 179.523/A 179.524/A | No description available
179.525/A 179.526/A 179.703/A 179.766/B | No description available
179.630/A 179.631/A 179.632/A 179.633/A 179.634/A 179.635/A 179.636/A 179.637/A 179.638/A 179.639/A 179.640/A 179.641/A 179.642/A 179.643/A 179.644/A 179.645/A 179.646/A 179.647/A 179.704/A0 179.706/A2 179.708/A4 179.710/A6 179.712/A8 179.759/At 179.761/Av 179.763/Ax 179.765/Az 179.778/BB 179.780/BD 179.782/BF 179.784/BH 179.786/BJ 179.788/BL 179.790/BN 179.792/BP 179.794/BR | No description available
179.648/A 179.650/A 179.652/A 179.654/A 179.656/A 179.658/A 179.660/A 179.662/A 179.664/A 179.666/A 179.668/A 179.670/A 179.672/A 179.648/B 179.650/B 179.652/B 179.654/B 179.656/B 179.658/B 179.660/B 179.662/B 179.664/B 179.666/B 179.668/B 179.670/B 179.672/B 179.768/B1 179.771/B4 179.772/B5 179.775/B8 179.776/B9 179.796/BT 179.797/BU 179.800/BX 179.801/BY 179.804/Bb 179.805/Bc 179.808/Bf 179.809/Bg 179.812/Bj 179.813/Bk 179.816/Bn 179.817/Bo 179.820/Br 179.821/Bs 179.824/Bv 179.825/Bw 179.828/Bz 179.831/CB 179.832/CC 179.835/CF 179.836/CG | No description available
179.649/A 179.651/A 179.653/A 179.655/A 179.657/A 179.659/A 179.661/A 179.663/A 179.665/A 179.667/A 179.669/A 179.671/A 179.673/A 179.649/B 179.651/B 179.653/B 179.655/B 179.657/B 179.659/B 179.661/B 179.663/B 179.665/B 179.667/B 179.669/B 179.671/B 179.673/B 179.767/B0 179.769/B2 179.770/B3 179.773/B6 179.774/B7 179.798/BV 179.799/BW 179.802/BZ 179.803/Ba 179.806/Bd 179.807/Be 179.810/Bh 179.811/Bi 179.814/Bl 179.815/Bm 179.818/Bp 179.819/Bq 179.822/Bt 179.823/Bu 179.826/Bx 179.827/By 179.830/CA 179.833/CD 179.834/CE 179.837/CH 179.838/CI | No description available
179.705/A1 179.707/A3 179.709/A5 179.711/A7 179.713/A9 179.760/Au 179.762/Aw 179.764/Ay 179.630/B 179.631/B 179.632/B 179.633/B 179.634/B 179.635/B 179.636/B 179.637/B 179.638/B 179.639/B 179.640/B 179.641/B 179.642/B 179.643/B 179.644/B 179.645/B 179.646/B 179.647/B 179.777/BA 179.779/BC 179.781/BE 179.783/BG 179.785/BI 179.787/BK 179.789/BM 179.791/BO 179.793/BQ 179.795/BS | No description available
179.278/AA 179.278/AB 179.278/AC 179.278/AD 179.278/AE 179.278/AF 179.278/AG 179.278/AH 179.278/AI 179.278/AJ 179.278/AK 179.278/BA 179.278/BB 179.278/BC 179.278/BD 179.278/BE 179.278/BF 179.278/BG 179.278/BH 179.278/BI 179.278/BJ 179.278/BK 179.278/CA 179.278/CB 179.278/CC 179.278/CD 179.278/CE 179.278/CF 179.278/CG 179.278/CH 179.278/CI 179.278/CJ 179.278/CK 179.278/DA 179.278/DB 179.278/DC 179.278/DD 179.278/DE 179.278/DF 179.278/DG 179.278/DH 179.278/DI 179.278/DJ 179.278/DK 179.278/EA 179.278/EB 179.278/EC 179.278/ED 179.278/EE 179.278/EF 179.278/EG 179.278/EH 179.278/EI 179.278/EJ 179.278/EK 179.278/FA 179.278/FB 179.278/FC 179.278/FD 179.278/FE 179.278/FF 179.278/FG 179.278/FH 179.278/FI 179.278/FJ 179.278/FK | No description available
179.757/Ar 179.758/As 179.629/C 179.629/D | No description available
179.1/B 179.2/B 179.3/B 179.4/B 179.5/B 179.6/B 179.7/B 179.8/B 179.9/B 179.10/B 179.11/B 179.12/B 179.13/B 179.14/B 179.15/B 179.16/B 179.17/B 179.18/B 179.19/B 179.20/B 179.21/B 179.22/B 179.23/B 179.24/B 179.25/B 179.26/B 179.27/B 179.28/B 179.29/B 179.30/B 179.31/B 179.32/B 179.33/B 179.34/B 179.35/B 179.36/B 179.37/B 179.38/B | No description available
179.383/B 179.389/B 179.395/B 179.401/B 179.404/B 179.407/B 179.410/B 179.413/B 179.416/B 179.419/B 179.422/B 179.425/B 179.428/B 179.431/B 179.434/B 179.437/B 179.440/B 179.443/B 179.446/B 179.449/B 179.452/B 179.455/B 179.384/C 179.390/C 179.396/C | No description available
179.485/B | No description available
179.487/B 179.489/B 179.490/B 179.491/B 179.492/B 179.493/B 179.494/B 179.495/B 179.496/B 179.497/B 179.498/B 179.499/B 179.500/B 179.501/B 179.502/B 179.503/B 179.504/B 179.505/B 179.506/B | No description available
179.528/B 179.529/B 179.530/B 179.531/B 179.532/B 179.533/B 179.534/B 179.535/B 179.536/B 179.537/B 179.829/C 179.875/D 179.876/E 179.877/F 179.878/G 179.879/H 179.880/I 179.881/J 179.882/K 179.883/L | No description available
179.674/B 179.675/B 179.676/B 179.677/B 179.678/B 179.679/B 179.680/B 179.681/B 179.682/B 179.683/B 179.684/B 179.685/B 179.686/B 179.687/B 179.688/B 179.689/B 179.690/B 179.691/B 179.839/CJ 179.841/CL 179.843/CN 179.845/CP 179.847/CR 179.849/CT 179.851/CV 179.853/CX 179.855/CZ 179.857/Cb 179.859/Cd 179.861/Cf 179.863/Ch 179.865/Cj 179.867/Cl 179.869/Cn 179.871/Cp 179.873/Cr | No description available
179.41/C 179.78/C 179.79/C 179.80/C 179.81/C 179.82/C 179.83/C 179.84/C 179.85/C 179.86/C 179.87/C 179.88/C 179.89/C 179.90/C 179.91/C 179.92/C 179.93/C 179.94/C 179.95/C | No description available
179.197/C 179.199/C 179.201/C 179.203/C 179.205/C 179.207/C 179.209/C 179.211/C 179.213/C 179.215/C 179.217/C 179.219/C 179.221/C 179.223/C 179.225/C 179.227/C 179.229/C 179.231/C 179.233/C 179.235/C 179.237/C 179.239/C 179.241/C 179.243/C 179.245/C 179.247/C 179.249/C 179.251/C 179.253/C 179.255/C 179.257/C 179.259/C 179.261/C 179.263/C 179.265/C 179.267/C 179.269/C 179.271/C 179.273/C 179.275/C | No description available
179.486/C | No description available
179.176/CA 179.176/CB 179.176/CC 179.176/CD | No description available
179.176/CE | No description available
179.176/CF 179.176/w 179.176/x 179.176/y 179.176/z | No description available
179.840/CK 179.842/CM 179.844/CO 179.846/CQ 179.848/CS 179.850/CU 179.852/CW 179.854/CY 179.856/Ca 179.858/Cc 179.860/Ce 179.862/Cg 179.864/Ci 179.866/Ck 179.868/Cm 179.870/Co 179.872/Cq 179.874/Cs 179.674/D 179.675/D 179.676/D 179.677/D 179.678/D 179.679/D 179.680/D 179.681/D 179.682/D 179.683/D 179.684/D 179.685/D 179.686/D 179.687/D 179.688/D 179.689/D 179.690/D 179.691/D | No description available
179.176/DA 179.176/DB 179.176/DC 179.176/DD 179.176/DE 179.176/DF 179.176/DG 179.176/DH 179.176/DI 179.176/DJ 179.176/DK | No description available
179.197/E 179.199/E 179.201/E 179.203/E 179.205/E 179.207/E 179.209/E 179.211/E 179.213/E 179.215/E 179.217/E 179.219/E 179.221/E 179.223/E 179.225/E 179.227/E 179.229/E 179.231/E 179.233/E 179.235/E 179.237/E 179.239/E 179.241/E 179.243/E 179.245/E 179.247/E 179.249/E 179.251/E 179.253/E 179.255/E 179.257/E 179.259/E 179.261/E 179.263/E 179.265/E 179.267/E 179.269/E 179.271/E 179.273/E 179.275/E | No description available
179.41/F 179.78/F 179.79/F 179.80/F 179.81/F 179.82/F 179.83/F 179.84/F 179.85/F 179.86/F 179.87/F 179.88/F 179.89/F 179.90/F 179.91/F 179.92/F 179.93/F 179.94/F 179.95/F 179.41/G 179.78/G 179.79/G 179.80/G 179.81/G 179.82/G 179.83/G 179.84/G 179.85/G 179.86/G 179.87/G 179.88/G 179.89/G 179.90/G 179.91/G 179.92/G 179.93/G 179.94/G 179.95/G | No description available
179.197/F 179.199/F 179.201/F 179.203/F 179.205/F 179.207/F 179.209/F 179.211/F 179.213/F 179.215/F 179.217/F 179.219/F 179.221/F 179.223/F 179.225/F 179.227/F 179.229/F 179.231/F 179.233/F 179.235/F 179.237/F 179.239/F 179.241/F 179.243/F 179.245/F 179.247/F 179.249/F 179.251/F 179.253/F 179.255/F 179.257/F 179.259/F 179.261/F 179.263/F 179.265/F 179.267/F 179.269/F 179.271/F 179.273/F 179.275/F | No description available
179.197/G 179.199/G 179.201/G 179.203/G 179.205/G 179.207/G 179.209/G 179.211/G 179.213/G 179.215/G 179.217/G 179.219/G 179.221/G 179.223/G 179.225/G 179.227/G 179.229/G 179.231/G 179.233/G 179.235/G 179.237/G 179.239/G 179.241/G 179.243/G 179.245/G 179.247/G 179.249/G 179.251/G 179.253/G 179.255/G 179.257/G 179.259/G 179.261/G 179.263/G 179.265/G 179.267/G 179.269/G 179.271/G 179.273/G 179.275/G 179.197/H 179.199/H 179.201/H 179.203/H 179.205/H 179.207/H 179.209/H 179.211/H 179.213/H 179.215/H 179.217/H 179.219/H 179.221/H 179.223/H 179.225/H 179.227/H 179.229/H 179.231/H 179.233/H 179.235/H 179.237/H 179.239/H 179.241/H 179.243/H 179.245/H 179.247/H 179.249/H 179.251/H 179.253/H 179.255/H 179.257/H 179.259/H 179.261/H 179.263/H 179.265/H 179.267/H 179.269/H 179.271/H 179.273/H 179.275/H | No description available
179.197/I 179.199/I 179.201/I 179.203/I 179.205/I 179.207/I 179.209/I 179.211/I 179.213/I 179.215/I 179.217/I 179.219/I 179.221/I 179.223/I 179.225/I 179.227/I 179.229/I 179.231/I 179.233/I 179.235/I 179.237/I 179.239/I 179.241/I 179.243/I 179.245/I 179.247/I 179.249/I 179.251/I 179.253/I 179.255/I 179.257/I 179.259/I 179.261/I 179.263/I 179.265/I 179.267/I 179.269/I 179.271/I 179.273/I 179.275/I | No description available
179.197/J 179.199/J 179.201/J 179.203/J 179.205/J 179.207/J 179.209/J 179.211/J 179.213/J 179.215/J 179.217/J 179.219/J 179.221/J 179.223/J 179.225/J 179.227/J 179.229/J 179.231/J 179.233/J 179.235/J 179.237/J 179.239/J 179.241/J 179.243/J 179.245/J 179.247/J 179.249/J 179.251/J 179.253/J 179.255/J 179.257/J 179.259/J 179.261/J 179.263/J 179.265/J 179.267/J 179.269/J 179.271/J 179.273/J 179.275/J | No description available
179.40/K 179.60/K 179.61/K 179.62/K 179.63/K 179.64/K 179.65/K 179.66/K 179.67/K 179.68/K 179.69/K 179.70/K 179.71/K 179.72/K 179.73/K 179.74/K 179.75/K 179.76/K 179.77/K | No description available
179.40/L 179.60/L 179.61/L 179.62/L 179.63/L 179.64/L 179.65/L 179.66/L 179.67/L 179.68/L 179.69/L 179.70/L 179.71/L 179.72/L 179.73/L 179.74/L 179.75/L 179.76/L 179.77/L | No description available
179.176/L 179.176/U 179.176/V 179.176/W 179.176/X | No description available
179.176/N | No description available
179.176/O | No description available
179.176/P | No description available
179.176/Q 179.176/S | No description available
179.176/R | No description available
179.176/T | No description available
179.176/a 179.176/c 179.176/d 179.176/e | No description available
179.177/a 179.177/b 179.177/c 179.177/d 179.177/e 179.177/f 179.177/g 179.177/h 179.177/i 179.177/j 179.177/k 179.177/l 179.177/m 179.177/n 179.177/o 179.177/p 179.177/q 179.177/r 179.177/s 179.177/t 179.177/u 179.177/v 179.177/w 179.177/x 179.177/y 179.177/z | No description available
179.176/b | No description available
179.176/f | No description available
179.176/g | No description available
179.176/h | No description available
179.176/i | No description available
179.176/j | No description available
179.176/k | No description available
179.176/l 179.176/m | No description available
179.176/n | No description available
179.176/o | No description available
179.176/p | No description available
179.176/q | No description available
179.176/r | No description available
179.176/s 179.176/t 179.176/u | No description available
179.176/v | No description available
Chain information for New_MotA.pdb
---
Chain | Description
180.1/? | No description available
180.2/C 180.3/D 180.4/E 180.5/F 180.6/G 180.7/H 180.8/I 180.9/J 180.10/K 180.11/L | No description available
180.12/M 180.13/N 180.14/O 180.15/P 180.16/Q 180.17/R 180.18/S 180.19/T 180.20/U 180.21/V | No description available
Chain information for New_FliL.pdb
---
Chain | Description
181.1/C 181.2/D 181.3/E 181.4/F 181.5/G 181.6/H 181.7/I 181.8/J 181.9/K 181.10/L | No description available
181.11/M 181.12/N 181.13/O 181.14/P 181.15/Q 181.16/R 181.17/S 181.18/T 181.19/U 181.20/V | No description available
Chain information for New_FliF.pdb
---
Chain | Description
182.1/0 182.2/1 182.3/2 182.4/3 182.5/4 182.6/5 182.7/6 182.8/7 182.9/8 182.10/9 182.11/AA 182.12/AB 182.91/r 182.92/s 182.93/t 182.94/u 182.95/v 182.96/w 182.97/x 182.98/y 182.99/z | No description available
182.13/AC 182.14/AD 182.15/AE 182.16/AF 182.17/AG 182.18/AH 182.19/AI 182.20/AJ 182.21/AK 182.22/AL 182.23/AM 182.24/AN 182.25/AO 182.26/AP 182.27/AQ 182.28/AR 182.29/AS 182.30/AT 182.31/AU 182.32/AV 182.33/AW 182.34/AX 182.35/AY 182.36/AZ 182.37/Aa 182.38/Ab 182.39/Ac 182.40/Ad 182.41/Ae 182.42/Af 182.43/Ag 182.44/Ah 182.45/Ai 182.46/Aj 182.47/Ak 182.48/Al 182.49/Am 182.50/An 182.51/Ao | No description available
182.52/CJ 182.53/CL 182.54/CN 182.55/CP 182.56/CR 182.57/CT 182.58/CV 182.59/CX 182.60/CZ 182.61/Cb 182.62/Cd 182.63/Cf 182.64/Ch 182.65/Cj 182.66/Cl 182.67/Cn 182.68/Cp 182.69/Cr | No description available
182.70/W 182.71/X 182.72/Y 182.73/Z 182.74/a 182.75/b 182.76/c 182.77/d 182.78/e 182.79/f 182.80/g 182.81/h 182.82/i 182.83/j 182.84/k 182.85/l 182.86/m 182.87/n 182.88/o 182.89/p 182.90/q | No description available
Chain information for New_PflB.pdb
---
Chain | Description
183.1/CJ 183.2/CL 183.3/CN 183.4/CP 183.5/CR 183.6/CT 183.7/CV 183.8/CX 183.9/CZ 183.10/Cb 183.11/Cd 183.12/Cf 183.13/Ch 183.14/Cj 183.15/Cl 183.16/Cn 183.17/Cp 183.18/Cr | No description available
Chain information for New_PflA.pdb
---
Chain | Description
184.1/A0 184.2/A2 184.3/A4 184.4/A6 184.5/A8 184.6/At 184.7/Av 184.8/Ax 184.9/Az 184.10/BB 184.11/BD 184.12/BF 184.13/BH 184.14/BJ 184.15/BL 184.16/BN 184.17/BP 184.18/BR | No description available
184.19/CK 184.20/CM 184.21/CO 184.22/CQ 184.23/CS 184.24/CU 184.25/CW 184.26/CY 184.27/Ca 184.28/Cc 184.29/Ce 184.30/Cg 184.31/Ci 184.32/Ck 184.33/Cm 184.34/Co 184.35/Cq 184.36/Cs | No description available
Chain information for New_FlgY.pdb
---
Chain | Description
185.1/B0 185.3/B2 185.4/B3 185.7/B6 185.8/B7 185.13/BV 185.14/BW 185.17/BZ 185.18/Ba 185.21/Bd 185.22/Be 185.25/Bh 185.26/Bi 185.29/Bl 185.30/Bm 185.33/Bp 185.34/Bq 185.37/Bt 185.38/Bu 185.41/Bx 185.42/By 185.44/CA 185.47/CD 185.48/CE 185.51/CH 185.52/CI | No description available
185.2/B1 185.5/B4 185.6/B5 185.9/B8 185.10/B9 185.11/BT 185.12/BU 185.15/BX 185.16/BY 185.19/Bb 185.20/Bc 185.23/Bf 185.24/Bg 185.27/Bj 185.28/Bk 185.31/Bn 185.32/Bo 185.35/Br 185.36/Bs 185.39/Bv 185.40/Bw 185.43/Bz 185.45/CB 185.46/CC 185.49/CF 185.50/CG | No description available
> hide #!479 models
> hide #!1-520 models
> show #!178 models
> show #!179 models
> show #!180 models
> hide #!180 models
> hide #!179 models
> show #!179 models
> hide #!179 models
> select add #180
19455 atoms, 19715 bonds, 2470 residues, 22 models selected
> select subtract #180
Nothing selected
> show #!180 models
> show #!181 models
> show #!182 models
> show #!183 models
> hide #!182 models
> show #!182 models
> show #!184 models
> show #!185 models
> view orient
> show #!113 models
> open
> /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/PDB_Files/H.pylori-
> model/BbMotB_dimer_extended.pdb
Chain information for BbMotB_dimer_extended.pdb #186
---
Chain | Description
K | No description available
L | No description available
> select add #186
4099 atoms, 4171 bonds, 518 residues, 1 model selected
> hide #!180 models
> hide #!181 models
> show #!181 models
> hide #!182 models
> hide #!183 models
> hide #!184 models
> hide #!185 models
> hide #!113 models
> ui mousemode right "translate selected models"
> view matrix models #186,1,0,0,785.95,0,1,0,547.46,0,0,1,0
> view matrix models #186,1,0,0,822.47,0,1,0,582.38,0,0,1,397.25
> view matrix models #186,1,0,0,749.56,0,1,0,546.83,0,0,1,377.34
> ui mousemode right "rotate selected models"
> view matrix models
> #186,-0.36816,-0.9223,-0.11754,979.18,0.66898,-0.17498,-0.72239,646.24,0.6457,-0.34459,0.68142,370.51
> hide #!181 models
> view matrix models
> #186,0.64651,0.46603,-0.60402,789.44,-0.53678,0.84048,0.073939,608.75,0.54213,0.27642,0.79353,314.62
> view matrix models
> #186,0.68432,0.4086,-0.60395,790.99,-0.47802,0.87683,0.051597,601.36,0.55064,0.25339,0.79535,315.76
> view matrix models
> #186,0.71361,0.31901,-0.6237,797.91,-0.54184,0.81566,-0.20275,633.47,0.44405,0.48262,0.75491,308.37
> view matrix models
> #186,0.85285,-0.20797,-0.47895,821.25,0.0047197,0.92029,-0.3912,584.72,0.52214,0.33138,0.78585,312.14
> ui mousemode right "translate selected models"
> view matrix models
> #186,0.85285,-0.20797,-0.47895,821.08,0.0047197,0.92029,-0.3912,634.89,0.52214,0.33138,0.78585,333.32
> ui mousemode right "rotate selected models"
> view matrix models
> #186,0.84562,-0.19924,-0.49521,822.28,0.0057329,0.93106,-0.36481,631.7,0.53376,0.30565,0.78846,334.33
> ui mousemode right "translate selected models"
> view matrix models
> #186,0.84562,-0.19924,-0.49521,823.24,0.0057329,0.93106,-0.36481,625.01,0.53376,0.30565,0.78846,339.18
> show #!180 models
> hide #!180 models
> show #!181 models
> ui mousemode right "rotate selected models"
> view matrix models
> #186,0.92725,0.02098,-0.37384,785.25,0.12433,0.92453,0.36026,556.41,0.35319,-0.38053,0.85467,415.04
> ui mousemode right "translate selected models"
> view matrix models
> #186,0.92725,0.02098,-0.37384,782.17,0.12433,0.92453,0.36026,511.76,0.35319,-0.38053,0.85467,414.01
> view matrix models
> #186,0.92725,0.02098,-0.37384,783.9,0.12433,0.92453,0.36026,508.86,0.35319,-0.38053,0.85467,413.91
> show #!180 models
> ui mousemode right "rotate selected models"
> view matrix models
> #186,0.93874,0.0069593,-0.34456,781.73,0.15136,0.88988,0.43035,503.82,0.30961,-0.45614,0.83431,426.8
> view matrix models
> #186,0.93353,0.014317,-0.35822,782.65,0.14336,0.90094,0.40959,505.24,0.3286,-0.43372,0.83899,422.48
> hide #!178 models
> select subtract #186
Nothing selected
> view orient
> show #!113 models
> view orient
> sym #180 C18 copies true center #113
Made 18 copies for New_MotA.pdb, New_MotA.pdb, New_MotA.pdb, New_MotA.pdb,
New_MotA.pdb, New_MotA.pdb, New_MotA.pdb, New_MotA.pdb, New_MotA.pdb,
New_MotA.pdb, New_MotA.pdb, New_MotA.pdb, New_MotA.pdb, New_MotA.pdb,
New_MotA.pdb, New_MotA.pdb, New_MotA.pdb, New_MotA.pdb, New_MotA.pdb,
New_MotA.pdb, New_MotA.pdb symmetry C18
> show #!482 models
> hide #!482 models
> close #491
> close #489#490,492-494
> show #!166 models
> hide #!166 models
> show #!166 models
> show #166.1 models
> show #166.2 models
> show #166.3 models
> close #169-170#166-168,171-172
> hide #!187 models
> show #!187 models
> hide #!186 models
> show #!186 models
> hide #!180 models
> hide #!181 models
> view orient
> sym #186 C18 copies true center #113
Made 18 copies for BbMotB_dimer_extended.pdb symmetry C18
> save /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure2.cxs includeMaps true
> show #!184 models
> color #!184 #f1514dff
[Repeated 1 time(s)]
> hide #!184 models
> show #!184 models
> hide #!184 models
> show #!184 models
> color #184 #bf4b58ff models
> color #184 #cd515fff models
> color #184 #cd6063ff models
> color #184 #cd525eff models
> color #184 #cd505bff models
> hide #!166 models
> hide #!113 models
> hide #!184 models
> show #!185 models
> undo
> show #!185 models
Drag select of 2 residues
[Repeated 1 time(s)]Drag select of 1 residues
[Repeated 1 time(s)]Drag select of 2 residues
Drag select of 3 residues
Drag select of 1 residues
> hide #185.5 models
> hide #185.6 models
> hide #185.10 models
> hide #185.45 models
> hide #185.46 models
> hide #185.49 models
> hide #185.50 models
Drag select of 1 residues
Drag select of 2 residues
Drag select of 3 residues
Drag select of 2 residues
[Repeated 2 time(s)]Drag select of 3 residues
[Repeated 1 time(s)]Drag select of 2 residues
Drag select of 3 residues
[Repeated 2 time(s)]
> hide #185.43 models
> hide #185.39 models
> hide #185.35 models
> hide #185.31 models
> hide #185.27 models
> hide #185.23 models
> hide #185.16 models
> hide #185.15 models
> hide #185.11 models
> hide #185.12 models
> hide #!185 models
> show #!185 models
> hide #185.19 models
> select clear
Drag select of 2 residues
[Repeated 1 time(s)]Drag select of 3 residues
Drag select of 4 residues
Drag select of 3 residues
[Repeated 1 time(s)]Drag select of 1 residues
Drag select of 4 residues
> hide #185.36 models
> hide #185.32 models
> hide #185.28 models
> hide #185.24 models
> hide #185.9 models
> hide #185.2 models
> hide #!185 models
> show #!185 models
> hide #185.40 models
Drag select of 5 residues
> hide #185.20 models
> select clear
> close #185.2
> close #185.5-6
> close #185.9-12
> close #185.15-16
> close #185.19-20
> close #185.23-24
> close #185.27-28
> close #185.31-32
> close #185.35-36
> close #185.39-40
> close #185.43
> close #185.45-46
> close #185.49-50
> select add #185.1
1312 atoms, 1320 bonds, 163 residues, 1 model selected
> select add #185.4
2624 atoms, 2640 bonds, 326 residues, 2 models selected
> select subtract #185.4
1312 atoms, 1320 bonds, 163 residues, 1 model selected
> select add #185.3
2624 atoms, 2640 bonds, 326 residues, 2 models selected
> select add #185.7
3936 atoms, 3960 bonds, 489 residues, 3 models selected
> select add #185.13
5248 atoms, 5280 bonds, 652 residues, 4 models selected
> select add #185.14
6560 atoms, 6600 bonds, 815 residues, 5 models selected
> select subtract #185.14
5248 atoms, 5280 bonds, 652 residues, 4 models selected
> select add #185.17
6560 atoms, 6600 bonds, 815 residues, 5 models selected
> select add #185.21
7872 atoms, 7920 bonds, 978 residues, 6 models selected
> select add #185.25
9184 atoms, 9240 bonds, 1141 residues, 7 models selected
> select add #185.29
10496 atoms, 10560 bonds, 1304 residues, 8 models selected
> select add #185.33
11808 atoms, 11880 bonds, 1467 residues, 9 models selected
> select add #185.37
13120 atoms, 13200 bonds, 1630 residues, 10 models selected
> select add #185.41
14432 atoms, 14520 bonds, 1793 residues, 11 models selected
> select add #185.42
15744 atoms, 15840 bonds, 1956 residues, 12 models selected
> select subtract #185.42
14432 atoms, 14520 bonds, 1793 residues, 11 models selected
> select add #185.47
15744 atoms, 15840 bonds, 1956 residues, 12 models selected
> hide sel cartoons
> show sel cartoons
> select add #185.51
17056 atoms, 17160 bonds, 2119 residues, 13 models selected
> color sel #f1cceeff
> color sel orchid
> color sel #f1cceeff
> select subtract #185.51
15744 atoms, 15840 bonds, 1956 residues, 12 models selected
> select clear
> select add #185.48
1312 atoms, 1320 bonds, 163 residues, 1 model selected
> select add #185.44
2624 atoms, 2640 bonds, 326 residues, 2 models selected
> select add #185.42
3936 atoms, 3960 bonds, 489 residues, 3 models selected
> select add #185.38
5248 atoms, 5280 bonds, 652 residues, 4 models selected
> select add #185.30
6560 atoms, 6600 bonds, 815 residues, 5 models selected
> select add #185.26
7872 atoms, 7920 bonds, 978 residues, 6 models selected
> select add #185.22
9184 atoms, 9240 bonds, 1141 residues, 7 models selected
> select add #185.18
10496 atoms, 10560 bonds, 1304 residues, 8 models selected
> select add #185.14
11808 atoms, 11880 bonds, 1467 residues, 9 models selected
> select add #185.8
13120 atoms, 13200 bonds, 1630 residues, 10 models selected
> select add #185.4
14432 atoms, 14520 bonds, 1793 residues, 11 models selected
> color sel orchid
> select add #185.34
15744 atoms, 15840 bonds, 1956 residues, 12 models selected
> select add #185.52
17056 atoms, 17160 bonds, 2119 residues, 13 models selected
> color sel orchid
> select clear
> show #!183 models
> select add #183
122922 atoms, 125496 bonds, 15174 residues, 19 models selected
> color sel #77297dff
> select subtract #183
Nothing selected
> select add #183.1
6829 atoms, 6972 bonds, 843 residues, 1 model selected
> select add #183.3
13658 atoms, 13944 bonds, 1686 residues, 2 models selected
> select add #183.5
20487 atoms, 20916 bonds, 2529 residues, 3 models selected
> select add #183.6
27316 atoms, 27888 bonds, 3372 residues, 4 models selected
> select add #183.7
34145 atoms, 34860 bonds, 4215 residues, 5 models selected
> select subtract #183.6
27316 atoms, 27888 bonds, 3372 residues, 4 models selected
> select add #183.9
34145 atoms, 34860 bonds, 4215 residues, 5 models selected
> select add #183.11
40974 atoms, 41832 bonds, 5058 residues, 6 models selected
> select add #183.13
47803 atoms, 48804 bonds, 5901 residues, 7 models selected
> select add #183.15
54632 atoms, 55776 bonds, 6744 residues, 8 models selected
> select add #183.17
61461 atoms, 62748 bonds, 7587 residues, 9 models selected
> color sel magenta
> select clear
> select add #187.18
19455 atoms, 19715 bonds, 2470 residues, 22 models selected
> hide #!185 models
> hide #!183 models
> show #!180 models
> select add #187
350190 atoms, 354870 bonds, 44460 residues, 397 models selected
> hide #!187 models
> select subtract #187
Nothing selected
> select add #180
19455 atoms, 19715 bonds, 2470 residues, 22 models selected
> show #180.1 models
> show #180.2 models
> show #180.3 models
> show #180.4 models
> show #!113 models
> view orient
> show #!186 models
> view orient
> close #187
> select subtract #180
Nothing selected
> hide #180.4 models
> hide #180.3 models
> hide #180.2 models
> hide #180.1 models
> show #180.1 models
> sym #180.1 C18 copies true center #113
Made 18 copies for New_MotA.pdb symmetry C18
> show #!181 models
> hide #181.20 models
> show #181.20 models
> sym #181 C18 copies true center #113
Made 18 copies for New_FliL.pdb, New_FliL.pdb, New_FliL.pdb, New_FliL.pdb,
New_FliL.pdb, New_FliL.pdb, New_FliL.pdb, New_FliL.pdb, New_FliL.pdb,
New_FliL.pdb, New_FliL.pdb, New_FliL.pdb, New_FliL.pdb, New_FliL.pdb,
New_FliL.pdb, New_FliL.pdb, New_FliL.pdb, New_FliL.pdb, New_FliL.pdb,
New_FliL.pdb symmetry C18
> hide #!168 models
> show #!168 models
> hide #!167 models
> show #!167 models
> sym #186 C18 copies true center #113
Made 18 copies for BbMotB_dimer_extended.pdb symmetry C18
> color #167 #bcbf12ff models
> color #167 #e2e715ff models
> color #167 #e5ea15ff models
> hide #!168 models
> show #!168 models
> color #168 #bf660cff models
> color #168 #ca6c0dff models
> color #168 #d5720eff models
> color #169 #bf9f58ff models
> color #169 #bfa059ff models
> color #169 #f2ca71ff models
> color #169 #dfba68ff models
> hide #!181 models
> hide #!180 models
> show #!183 models
> show #!184 models
> color #184 #d8452cff models
> color #184 #e2330cff models
> color #184 #2b3ce2ff models
> color #184 #e22218ff models
> color #184 #e24749ff models
> color #184 #e22d2eff models
> show #!177 models
> hide #!177 models
> show #!185 models
> show #!313 models
> show #!316 models
> color #313-316 #28601d66 models
> show #!484 models
> color #484 #28601d66 models
> view Tilt
> view Side1
> show #!71 models
> show #!73 models
> show #!74 models
> show #!75 models
> show #!58 models
> show #!59 models
> show #!76 models
> show #!77 models
> show #!78 models
> show #!79 models
> view Tilt
> close #72
> hide #!113 models
> color #58-59 #83bf88ff models
> color #71-84 #83bf88ff models
> color #312 #7c9b66ff models
> show #!312 models
> color #513-514 #7c9b66ff models
> show #!513 models
> show #!514 models
> show #!16 models
> color #16 #7c9b66ff models
> show #!97 models
> color #97 #7c9b66ff models
> volume #97 region 120,0,0,239,239,239
> volume #97 region 110,0,0,239,239,239
> volume #97 region 111,0,0,239,239,239
> volume #97 region 112,0,0,239,239,239
> volume #97 region 115,0,0,239,239,239
> show #!52 models
> show #!53 models
> hide #!53 models
> show #!53 models
> show #!65 models
> volume #65 region 115,0,0,239,239,239
No volumes specified
> color #65 #73919cff models
> color #52 #73919cff models
> color #53 #bbabbfff
> color #53 #d5c3daff
> color #53 #cbbad0ff
> show #!182 models
> color #182 #73919cff models
> show #!486 models
> show #!488 models
> show #!501 models
> show #!502 models
> hide #!486.4 models
> show #!486.4 models
> show #!80 models
> show #!84 models
> hide #!84 models
> show #!81 models
> hide #!81 models
> show #!86 models
> hide #!86 models
> show #!86 models
> hide #!86 models
> show #!121 models
> hide #!121 models
> show #!123 models
> color #121-123 #83bf88ff models
> hide #!80 models
> color #86 #83bf88ff models
> hide #!486.14 models
> hide #!488.14 models
> hide #!501.14 models
> hide #!502.14 models
> color #486 #a1bfa7ff models
> color #486 #8fbf99ff models
> color #486 #85bf8fff models
> color #486 #b2ffbfff models
> color #486 #aefabcff models
> color #486 #a7f0b4ff models
> color #486 #96d8a2ff models
> color #486 #b6d8baff models
> color #486 #98d88aff models
> color #486 #9bd888ff models
> color #486 #91d88aff models
> color #488 #91d88aff models
> color #501-502 #91d88aff models
> view Side`1
Expected an objects specifier or a view name or a keyword
> view Side1
> show #!63 models
> color #63 #3dbfb9ff models
> color #63 #3bb1bfff models
> color #63 #21afbfff models
> color #63 #4ba9bfff models
> save /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure2.cxs includeMaps true
——— End of log from Fri Jul 5 19:02:42 2024 ———
opened ChimeraX session
> show #!259 models
> open /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/FlgV_complex.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/HP-
Grant-2023-2024/Chimera_Grant_July_2024/FlgV_complex.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
8 messages similar to the above omitted
End residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A 144
0
Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
116 0
Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
133 0
Start residue of secondary structure not found: SHEET 7 7 1 ALA B 153 GLN B
156 0
Start residue of secondary structure not found: SHEET 8 8 1 LEU B 159 ASP B
164 0
Start residue of secondary structure not found: SHEET 9 9 1 GLY B 167 ASP B
177 0
Chain information for FlgV_complex.pdb
---
Chain | Description
72.1/A 72.2/A 72.3/A 72.4/A 72.5/A 72.6/A 72.7/A 72.8/A 72.9/A 72.10/A 72.11/A 72.12/A 72.13/A 72.14/A 72.15/A 72.16/A 72.17/A 72.18/A 72.19/A 72.20/A 72.21/A 72.1/B 72.2/B 72.3/B 72.4/B 72.5/B 72.6/B 72.7/B 72.8/B 72.9/B 72.10/B 72.11/B 72.12/B 72.13/B 72.14/B 72.15/B 72.16/B 72.17/B 72.18/B 72.19/B 72.20/B 72.21/B | No description available
72.1/C 72.2/C 72.3/C 72.4/C 72.5/C 72.6/C 72.7/C 72.8/C 72.9/C 72.10/C 72.11/C 72.12/C 72.13/C 72.14/C 72.15/C 72.16/C 72.17/C 72.18/C 72.19/C 72.20/C 72.21/C | No description available
> hide #!63 models
> hide #!259 models
> select add #72
131565 atoms, 132762 bonds, 8148 residues, 22 models selected
> show #!259 models
> ui tool show "Fit in Map"
Must specify one map, got 21
> volume add #259
Opened volume sum as #170, grid size 230,232,166, pixel 4.2, shown at step 1,
values float32
> volume #170 level 0.1389
> volume #170 level 0.06005
> surface dust #170 size 12.6
> surface dust #170 size 100
> combine #72 modelId #187 name FlgV_Complec_C21
Remapping chain ID 'A' in FlgV_complex.pdb #72.2 to 'D'
Remapping chain ID 'B' in FlgV_complex.pdb #72.2 to 'E'
Remapping chain ID 'C' in FlgV_complex.pdb #72.2 to 'F'
Remapping chain ID 'A' in FlgV_complex.pdb #72.3 to 'G'
Remapping chain ID 'B' in FlgV_complex.pdb #72.3 to 'H'
Remapping chain ID 'C' in FlgV_complex.pdb #72.3 to 'I'
Remapping chain ID 'A' in FlgV_complex.pdb #72.4 to 'J'
Remapping chain ID 'B' in FlgV_complex.pdb #72.4 to 'K'
Remapping chain ID 'C' in FlgV_complex.pdb #72.4 to 'L'
Remapping chain ID 'A' in FlgV_complex.pdb #72.5 to 'M'
Remapping chain ID 'B' in FlgV_complex.pdb #72.5 to 'N'
Remapping chain ID 'C' in FlgV_complex.pdb #72.5 to 'O'
Remapping chain ID 'A' in FlgV_complex.pdb #72.6 to 'P'
Remapping chain ID 'B' in FlgV_complex.pdb #72.6 to 'Q'
Remapping chain ID 'C' in FlgV_complex.pdb #72.6 to 'R'
Remapping chain ID 'A' in FlgV_complex.pdb #72.7 to 'S'
Remapping chain ID 'B' in FlgV_complex.pdb #72.7 to 'T'
Remapping chain ID 'C' in FlgV_complex.pdb #72.7 to 'U'
Remapping chain ID 'A' in FlgV_complex.pdb #72.8 to 'V'
Remapping chain ID 'B' in FlgV_complex.pdb #72.8 to 'W'
Remapping chain ID 'C' in FlgV_complex.pdb #72.8 to 'X'
Remapping chain ID 'A' in FlgV_complex.pdb #72.9 to 'Y'
Remapping chain ID 'B' in FlgV_complex.pdb #72.9 to 'Z'
Remapping chain ID 'C' in FlgV_complex.pdb #72.9 to 'a'
Remapping chain ID 'A' in FlgV_complex.pdb #72.10 to 'b'
Remapping chain ID 'B' in FlgV_complex.pdb #72.10 to 'c'
Remapping chain ID 'C' in FlgV_complex.pdb #72.10 to 'd'
Remapping chain ID 'A' in FlgV_complex.pdb #72.11 to 'e'
Remapping chain ID 'B' in FlgV_complex.pdb #72.11 to 'f'
Remapping chain ID 'C' in FlgV_complex.pdb #72.11 to 'g'
Remapping chain ID 'A' in FlgV_complex.pdb #72.12 to 'h'
Remapping chain ID 'B' in FlgV_complex.pdb #72.12 to 'i'
Remapping chain ID 'C' in FlgV_complex.pdb #72.12 to 'j'
Remapping chain ID 'A' in FlgV_complex.pdb #72.13 to 'k'
Remapping chain ID 'B' in FlgV_complex.pdb #72.13 to 'l'
Remapping chain ID 'C' in FlgV_complex.pdb #72.13 to 'm'
Remapping chain ID 'A' in FlgV_complex.pdb #72.14 to 'n'
Remapping chain ID 'B' in FlgV_complex.pdb #72.14 to 'o'
Remapping chain ID 'C' in FlgV_complex.pdb #72.14 to 'p'
Remapping chain ID 'A' in FlgV_complex.pdb #72.15 to 'q'
Remapping chain ID 'B' in FlgV_complex.pdb #72.15 to 'r'
Remapping chain ID 'C' in FlgV_complex.pdb #72.15 to 's'
Remapping chain ID 'A' in FlgV_complex.pdb #72.16 to 't'
Remapping chain ID 'B' in FlgV_complex.pdb #72.16 to 'u'
Remapping chain ID 'C' in FlgV_complex.pdb #72.16 to 'v'
Remapping chain ID 'A' in FlgV_complex.pdb #72.17 to 'w'
Remapping chain ID 'B' in FlgV_complex.pdb #72.17 to 'x'
Remapping chain ID 'C' in FlgV_complex.pdb #72.17 to 'y'
Remapping chain ID 'A' in FlgV_complex.pdb #72.18 to 'z'
Remapping chain ID 'B' in FlgV_complex.pdb #72.18 to '1'
Remapping chain ID 'C' in FlgV_complex.pdb #72.18 to '2'
Remapping chain ID 'A' in FlgV_complex.pdb #72.19 to '3'
Remapping chain ID 'B' in FlgV_complex.pdb #72.19 to '4'
Remapping chain ID 'C' in FlgV_complex.pdb #72.19 to '5'
Remapping chain ID 'A' in FlgV_complex.pdb #72.20 to '6'
Remapping chain ID 'B' in FlgV_complex.pdb #72.20 to '7'
Remapping chain ID 'C' in FlgV_complex.pdb #72.20 to '8'
Remapping chain ID 'A' in FlgV_complex.pdb #72.21 to '9'
Remapping chain ID 'B' in FlgV_complex.pdb #72.21 to '0'
Remapping chain ID 'C' in FlgV_complex.pdb #72.21 to 'AA'
> close #72
> fitmap #187 inMap #170
Fit molecule FlgV_Complec_C21 (#187) to map volume sum (#170) using 131565
atoms
average map value = -0.1276, steps = 48
shifted from previous position = 3.67
rotated from previous position = 1.16 degrees
atoms outside contour = 78479, contour level = 0.060046
Position of FlgV_Complec_C21 (#187) relative to volume sum (#170) coordinates:
Matrix rotation and translation
-0.23691635 -0.97152905 -0.00139015 987.04232731
0.97148185 -0.23689010 -0.01029991 -57.76003264
0.00967735 -0.00379072 0.99994598 -38.08759387
Axis 0.00334998 -0.00569593 0.99997817
Axis point 516.34585931 358.69344052 0.00000000
Rotation angle (degrees) 103.70543095
Shift along axis -34.45119228
> fitmap #187 inMap #170
Fit molecule FlgV_Complec_C21 (#187) to map volume sum (#170) using 131565
atoms
average map value = -0.1276, steps = 44
shifted from previous position = 0.0194
rotated from previous position = 0.0221 degrees
atoms outside contour = 78451, contour level = 0.060046
Position of FlgV_Complec_C21 (#187) relative to volume sum (#170) coordinates:
Matrix rotation and translation
-0.23728934 -0.97143805 -0.00136587 987.18147527
0.97139101 -0.23726340 -0.01027498 -57.53640213
0.00965744 -0.00376493 0.99994627 -38.09744324
Axis 0.00335074 -0.00567372 0.99997829
Axis point 516.31840122 358.70706145 0.00000000
Rotation angle (degrees) 103.72742994
Shift along axis -34.46238728
> fitmap #187 inMap #170
Fit molecule FlgV_Complec_C21 (#187) to map volume sum (#170) using 131565
atoms
average map value = -0.1276, steps = 60
shifted from previous position = 0.0238
rotated from previous position = 0.00238 degrees
atoms outside contour = 78446, contour level = 0.060046
Position of FlgV_Complec_C21 (#187) relative to volume sum (#170) coordinates:
Matrix rotation and translation
-0.23727286 -0.97144206 -0.00137629 987.19398704
0.97139541 -0.23724696 -0.01023843 -57.56859586
0.00961953 -0.00376622 0.99994663 -38.09175832
Axis 0.00333125 -0.00565954 0.99997844
Axis point 516.33715095 358.70269533 0.00000000
Rotation angle (degrees) 103.72644851
Shift along axis -34.47653626
> close #170
> color #187 #316bbfff
> show #!63 models
> view Side1
> select add #183
122922 atoms, 125496 bonds, 15174 residues, 19 models selected
Alignment identifier is 1
> select #183.1/CJ:2 #183.2/CL:2 #183.3/CN:2 #183.4/CP:2 #183.5/CR:2
> #183.6/CT:2 #183.7/CV:2 #183.8/CX:2 #183.9/CZ:2 #183.10/Cb:2 #183.11/Cd:2
> #183.12/Cf:2 #183.13/Ch:2 #183.14/Cj:2 #183.15/Cl:2 #183.16/Cn:2
> #183.17/Cp:2 #183.18/Cr:2
144 atoms, 126 bonds, 18 residues, 18 models selected
> select #183.1/CJ:2-138 #183.2/CL:2-138 #183.3/CN:2-138 #183.4/CP:2-138
> #183.5/CR:2-138 #183.6/CT:2-138 #183.7/CV:2-138 #183.8/CX:2-138
> #183.9/CZ:2-138 #183.10/Cb:2-138 #183.11/Cd:2-138 #183.12/Cf:2-138
> #183.13/Ch:2-138 #183.14/Cj:2-138 #183.15/Cl:2-138 #183.16/Cn:2-138
> #183.17/Cp:2-138 #183.18/Cr:2-138
19242 atoms, 19386 bonds, 2466 residues, 18 models selected
1 [ID: 1] region 18 chains [2-138] RMSD: 532.685
> select add #183
122922 atoms, 125496 bonds, 15174 residues, 19 models selected
> select add #182
357969 atoms, 364773 bonds, 44505 residues, 119 models selected
> select add #184
467841 atoms, 476787 bonds, 57987 residues, 156 models selected
> select add #185
501953 atoms, 511107 bonds, 62225 residues, 183 models selected
> select add #187
633518 atoms, 643869 bonds, 70373 residues, 184 models selected
> show sel surfaces
[Repeated 1 time(s)]
> select #183.1/CJ:1 #183.2/CL:1 #183.3/CN:1 #183.4/CP:1 #183.5/CR:1
> #183.6/CT:1 #183.7/CV:1 #183.8/CX:1 #183.9/CZ:1 #183.10/Cb:1 #183.11/Cd:1
> #183.12/Cf:1 #183.13/Ch:1 #183.14/Cj:1 #183.15/Cl:1 #183.16/Cn:1
> #183.17/Cp:1 #183.18/Cr:1
144 atoms, 126 bonds, 18 residues, 18 models selected
> select #183.1/CJ:1-86 #183.2/CL:1-86 #183.3/CN:1-86 #183.4/CP:1-86
> #183.5/CR:1-86 #183.6/CT:1-86 #183.7/CV:1-86 #183.8/CX:1-86 #183.9/CZ:1-86
> #183.10/Cb:1-86 #183.11/Cd:1-86 #183.12/Cf:1-86 #183.13/Ch:1-86
> #183.14/Cj:1-86 #183.15/Cl:1-86 #183.16/Cn:1-86 #183.17/Cp:1-86
> #183.18/Cr:1-86
12240 atoms, 12348 bonds, 1548 residues, 18 models selected
1 [ID: 1] region 18 chains [1-86] RMSD: 561.602
> select #183.1/CJ:1-7 #183.2/CL:1-7 #183.3/CN:1-7 #183.4/CP:1-7 #183.5/CR:1-7
> #183.6/CT:1-7 #183.7/CV:1-7 #183.8/CX:1-7 #183.9/CZ:1-7 #183.10/Cb:1-7
> #183.11/Cd:1-7 #183.12/Cf:1-7 #183.13/Ch:1-7 #183.14/Cj:1-7 #183.15/Cl:1-7
> #183.16/Cn:1-7 #183.17/Cp:1-7 #183.18/Cr:1-7
1062 atoms, 1044 bonds, 126 residues, 18 models selected
> select #183.1/CJ:1-137 #183.2/CL:1-137 #183.3/CN:1-137 #183.4/CP:1-137
> #183.5/CR:1-137 #183.6/CT:1-137 #183.7/CV:1-137 #183.8/CX:1-137
> #183.9/CZ:1-137 #183.10/Cb:1-137 #183.11/Cd:1-137 #183.12/Cf:1-137
> #183.13/Ch:1-137 #183.14/Cj:1-137 #183.15/Cl:1-137 #183.16/Cn:1-137
> #183.17/Cp:1-137 #183.18/Cr:1-137
19278 atoms, 19422 bonds, 2466 residues, 18 models selected
1 [ID: 1] region 18 chains [1-137] RMSD: 533.243
> hide sel surfaces
[Repeated 1 time(s)]
> select add #182.63
26107 atoms, 26394 bonds, 3309 residues, 37 models selected
> hide #!182.63 models
> select add #182.64
32936 atoms, 33366 bonds, 4152 residues, 39 models selected
> select add #182.65
39765 atoms, 40338 bonds, 4995 residues, 41 models selected
> select add #182.62
46594 atoms, 47310 bonds, 5838 residues, 43 models selected
> select add #182.61
53423 atoms, 54282 bonds, 6681 residues, 45 models selected
> select add #182.60
60252 atoms, 61254 bonds, 7524 residues, 47 models selected
> select add #182.59
67081 atoms, 68226 bonds, 8367 residues, 49 models selected
> select add #182.58
73910 atoms, 75198 bonds, 9210 residues, 51 models selected
> select add #182.66
80739 atoms, 82170 bonds, 10053 residues, 53 models selected
> select add #182.67
87568 atoms, 89142 bonds, 10896 residues, 55 models selected
> select add #182.68
94397 atoms, 96114 bonds, 11739 residues, 57 models selected
> select add #182.69
101226 atoms, 103086 bonds, 12582 residues, 59 models selected
> select add #182.70
101964 atoms, 103837 bonds, 12675 residues, 61 models selected
> select subtract #182.70
101226 atoms, 103086 bonds, 12582 residues, 61 models selected
> select add #182.57
108055 atoms, 110058 bonds, 13425 residues, 61 models selected
> select add #182.56
114884 atoms, 117030 bonds, 14268 residues, 63 models selected
> select add #182.55
121713 atoms, 124002 bonds, 15111 residues, 65 models selected
> select add #182.54
128542 atoms, 130974 bonds, 15954 residues, 67 models selected
> select add #182.53
135371 atoms, 137946 bonds, 16797 residues, 69 models selected
> select add #182.52
142200 atoms, 144918 bonds, 17640 residues, 71 models selected
> close #182.52-69
> hide sel cartoons
> select clear
Drag select of C-ring.pdb_C SES surface, 1954 of 368554 triangles, 9 residues
> select clear
> hide #!168.18 models
> show #!168.18 models
> select add #168
177300 atoms, 179100 bonds, 21960 residues, 379 models selected
Alignment identifier is 1
Alignment identifier is 2
> select #168.1.11/M:52 #168.1.12/N:52 #168.1.13/O:52 #168.1.14/P:52
> #168.1.15/Q:52 #168.1.16/R:52 #168.1.17/S:52 #168.1.18/T:52 #168.1.19/U:52
> #168.1.20/V:52 #168.2.11/M:52 #168.2.12/N:52 #168.2.13/O:52 #168.2.14/P:52
> #168.2.15/Q:52 #168.2.16/R:52 #168.2.17/S:52 #168.2.18/T:52 #168.2.19/U:52
> #168.2.20/V:52 #168.3.11/M:52 #168.3.12/N:52 #168.3.13/O:52 #168.3.14/P:52
> #168.3.15/Q:52 #168.3.16/R:52 #168.3.17/S:52 #168.3.18/T:52 #168.3.19/U:52
> #168.3.20/V:52 #168.4.11/M:52 #168.4.12/N:52 #168.4.13/O:52 #168.4.14/P:52
> #168.4.15/Q:52 #168.4.16/R:52 #168.4.17/S:52 #168.4.18/T:52 #168.4.19/U:52
> #168.4.20/V:52 #168.5.11/M:52 #168.5.12/N:52 #168.5.13/O:52 #168.5.14/P:52
> #168.5.15/Q:52 #168.5.16/R:52 #168.5.17/S:52 #168.5.18/T:52 #168.5.19/U:52
> #168.5.20/V:52 #168.6.11/M:52 #168.6.12/N:52 #168.6.13/O:52 #168.6.14/P:52
> #168.6.15/Q:52 #168.6.16/R:52 #168.6.17/S:52 #168.6.18/T:52 #168.6.19/U:52
> #168.6.20/V:52 #168.7.11/M:52 #168.7.12/N:52 #168.7.13/O:52 #168.7.14/P:52
> #168.7.15/Q:52 #168.7.16/R:52 #168.7.17/S:52 #168.7.18/T:52 #168.7.19/U:52
> #168.7.20/V:52 #168.8.11/M:52 #168.8.12/N:52 #168.8.13/O:52 #168.8.14/P:52
> #168.8.15/Q:52 #168.8.16/R:52 #168.8.17/S:52 #168.8.18/T:52 #168.8.19/U:52
> #168.8.20/V:52 #168.9.11/M:52 #168.9.12/N:52 #168.9.13/O:52 #168.9.14/P:52
> #168.9.15/Q:52 #168.9.16/R:52 #168.9.17/S:52 #168.9.18/T:52 #168.9.19/U:52
> #168.9.20/V:52 #168.10.11/M:52 #168.10.12/N:52 #168.10.13/O:52
> #168.10.14/P:52 #168.10.15/Q:52 #168.10.16/R:52 #168.10.17/S:52
> #168.10.18/T:52 #168.10.19/U:52 #168.10.20/V:52 #168.11.11/M:52
> #168.11.12/N:52 #168.11.13/O:52 #168.11.14/P:52 #168.11.15/Q:52
> #168.11.16/R:52 #168.11.17/S:52 #168.11.18/T:52 #168.11.19/U:52
> #168.11.20/V:52 #168.12.11/M:52 #168.12.12/N:52 #168.12.13/O:52
> #168.12.14/P:52 #168.12.15/Q:52 #168.12.16/R:52 #168.12.17/S:52
> #168.12.18/T:52 #168.12.19/U:52 #168.12.20/V:52 #168.13.11/M:52
> #168.13.12/N:52 #168.13.13/O:52 #168.13.14/P:52 #168.13.15/Q:52
> #168.13.16/R:52 #168.13.17/S:52 #168.13.18/T:52 #168.13.19/U:52
> #168.13.20/V:52 #168.14.11/M:52 #168.14.12/N:52 #168.14.13/O:52
> #168.14.14/P:52 #168.14.15/Q:52 #168.14.16/R:52 #168.14.17/S:52
> #168.14.18/T:52 #168.14.19/U:52 #168.14.20/V:52 #168.15.11/M:52
> #168.15.12/N:52 #168.15.13/O:52 #168.15.14/P:52 #168.15.15/Q:52
> #168.15.16/R:52 #168.15.17/S:52 #168.15.18/T:52 #168.15.19/U:52
> #168.15.20/V:52 #168.16.11/M:52 #168.16.12/N:52 #168.16.13/O:52
> #168.16.14/P:52 #168.16.15/Q:52 #168.16.16/R:52 #168.16.17/S:52
> #168.16.18/T:52 #168.16.19/U:52 #168.16.20/V:52 #168.17.11/M:52
> #168.17.12/N:52 #168.17.13/O:52 #168.17.14/P:52 #168.17.15/Q:52
> #168.17.16/R:52 #168.17.17/S:52 #168.17.18/T:52 #168.17.19/U:52
> #168.17.20/V:52 #168.18.11/M:52 #168.18.12/N:52 #168.18.13/O:52
> #168.18.14/P:52 #168.18.15/Q:52 #168.18.16/R:52 #168.18.17/S:52
> #168.18.18/T:52 #168.18.19/U:52 #168.18.20/V:52
1080 atoms, 900 bonds, 180 residues, 180 models selected
> select #168.1.11/M #168.1.12/N #168.1.13/O #168.1.14/P #168.1.15/Q
> #168.1.16/R #168.1.17/S #168.1.18/T #168.1.19/U #168.1.20/V #168.2.11/M
> #168.2.12/N #168.2.13/O #168.2.14/P #168.2.15/Q #168.2.16/R #168.2.17/S
> #168.2.18/T #168.2.19/U #168.2.20/V #168.3.11/M #168.3.12/N #168.3.13/O
> #168.3.14/P #168.3.15/Q #168.3.16/R #168.3.17/S #168.3.18/T #168.3.19/U
> #168.3.20/V #168.4.11/M #168.4.12/N #168.4.13/O #168.4.14/P #168.4.15/Q
> #168.4.16/R #168.4.17/S #168.4.18/T #168.4.19/U #168.4.20/V #168.5.11/M
> #168.5.12/N #168.5.13/O #168.5.14/P #168.5.15/Q #168.5.16/R #168.5.17/S
> #168.5.18/T #168.5.19/U #168.5.20/V #168.6.11/M #168.6.12/N #168.6.13/O
> #168.6.14/P #168.6.15/Q #168.6.16/R #168.6.17/S #168.6.18/T #168.6.19/U
> #168.6.20/V #168.7.11/M #168.7.12/N #168.7.13/O #168.7.14/P #168.7.15/Q
> #168.7.16/R #168.7.17/S #168.7.18/T #168.7.19/U #168.7.20/V #168.8.11/M
> #168.8.12/N #168.8.13/O #168.8.14/P #168.8.15/Q #168.8.16/R #168.8.17/S
> #168.8.18/T #168.8.19/U #168.8.20/V #168.9.11/M #168.9.12/N #168.9.13/O
> #168.9.14/P #168.9.15/Q #168.9.16/R #168.9.17/S #168.9.18/T #168.9.19/U
> #168.9.20/V #168.10.11/M #168.10.12/N #168.10.13/O #168.10.14/P #168.10.15/Q
> #168.10.16/R #168.10.17/S #168.10.18/T #168.10.19/U #168.10.20/V
> #168.11.11/M #168.11.12/N #168.11.13/O #168.11.14/P #168.11.15/Q
> #168.11.16/R #168.11.17/S #168.11.18/T #168.11.19/U #168.11.20/V
> #168.12.11/M #168.12.12/N #168.12.13/O #168.12.14/P #168.12.15/Q
> #168.12.16/R #168.12.17/S #168.12.18/T #168.12.19/U #168.12.20/V
> #168.13.11/M #168.13.12/N #168.13.13/O #168.13.14/P #168.13.15/Q
> #168.13.16/R #168.13.17/S #168.13.18/T #168.13.19/U #168.13.20/V
> #168.14.11/M #168.14.12/N #168.14.13/O #168.14.14/P #168.14.15/Q
> #168.14.16/R #168.14.17/S #168.14.18/T #168.14.19/U #168.14.20/V
> #168.15.11/M #168.15.12/N #168.15.13/O #168.15.14/P #168.15.15/Q
> #168.15.16/R #168.15.17/S #168.15.18/T #168.15.19/U #168.15.20/V
> #168.16.11/M #168.16.12/N #168.16.13/O #168.16.14/P #168.16.15/Q
> #168.16.16/R #168.16.17/S #168.16.18/T #168.16.19/U #168.16.20/V
> #168.17.11/M #168.17.12/N #168.17.13/O #168.17.14/P #168.17.15/Q
> #168.17.16/R #168.17.17/S #168.17.18/T #168.17.19/U #168.17.20/V
> #168.18.11/M #168.18.12/N #168.18.13/O #168.18.14/P #168.18.15/Q
> #168.18.16/R #168.18.17/S #168.18.18/T #168.18.19/U #168.18.20/V
33480 atoms, 33840 bonds, 4320 residues, 180 models selected
2 [ID: 2] region 180 chains [1-24] RMSD: 456.496
> hide sel cartoons
> hide sel surfaces
> select #168.1.1/C:105-175 #168.1.2/D:105-175 #168.1.3/E:105-175
> #168.1.4/F:105-175 #168.1.5/G:105-175 #168.1.6/H:105-175 #168.1.7/I:105-175
> #168.1.8/J:105-175 #168.1.9/K:105-175 #168.1.10/L:105-175 #168.2.1/C:105-175
> #168.2.2/D:105-175 #168.2.3/E:105-175 #168.2.4/F:105-175 #168.2.5/G:105-175
> #168.2.6/H:105-175 #168.2.7/I:105-175 #168.2.8/J:105-175 #168.2.9/K:105-175
> #168.2.10/L:105-175 #168.3.1/C:105-175 #168.3.2/D:105-175 #168.3.3/E:105-175
> #168.3.4/F:105-175 #168.3.5/G:105-175 #168.3.6/H:105-175 #168.3.7/I:105-175
> #168.3.8/J:105-175 #168.3.9/K:105-175 #168.3.10/L:105-175 #168.4.1/C:105-175
> #168.4.2/D:105-175 #168.4.3/E:105-175 #168.4.4/F:105-175 #168.4.5/G:105-175
> #168.4.6/H:105-175 #168.4.7/I:105-175 #168.4.8/J:105-175 #168.4.9/K:105-175
> #168.4.10/L:105-175 #168.5.1/C:105-175 #168.5.2/D:105-175 #168.5.3/E:105-175
> #168.5.4/F:105-175 #168.5.5/G:105-175 #168.5.6/H:105-175 #168.5.7/I:105-175
> #168.5.8/J:105-175 #168.5.9/K:105-175 #168.5.10/L:105-175 #168.6.1/C:105-175
> #168.6.2/D:105-175 #168.6.3/E:105-175 #168.6.4/F:105-175 #168.6.5/G:105-175
> #168.6.6/H:105-175 #168.6.7/I:105-175 #168.6.8/J:105-175 #168.6.9/K:105-175
> #168.6.10/L:105-175 #168.7.1/C:105-175 #168.7.2/D:105-175 #168.7.3/E:105-175
> #168.7.4/F:105-175 #168.7.5/G:105-175 #168.7.6/H:105-175 #168.7.7/I:105-175
> #168.7.8/J:105-175 #168.7.9/K:105-175 #168.7.10/L:105-175 #168.8.1/C:105-175
> #168.8.2/D:105-175 #168.8.3/E:105-175 #168.8.4/F:105-175 #168.8.5/G:105-175
> #168.8.6/H:105-175 #168.8.7/I:105-175 #168.8.8/J:105-175 #168.8.9/K:105-175
> #168.8.10/L:105-175 #168.9.1/C:105-175 #168.9.2/D:105-175 #168.9.3/E:105-175
> #168.9.4/F:105-175 #168.9.5/G:105-175 #168.9.6/H:105-175 #168.9.7/I:105-175
> #168.9.8/J:105-175 #168.9.9/K:105-175 #168.9.10/L:105-175
> #168.10.1/C:105-175 #168.10.2/D:105-175 #168.10.3/E:105-175
> #168.10.4/F:105-175 #168.10.5/G:105-175 #168.10.6/H:105-175
> #168.10.7/I:105-175 #168.10.8/J:105-175 #168.10.9/K:105-175
> #168.10.10/L:105-175 #168.11.1/C:105-175 #168.11.2/D:105-175
> #168.11.3/E:105-175 #168.11.4/F:105-175 #168.11.5/G:105-175
> #168.11.6/H:105-175 #168.11.7/I:105-175 #168.11.8/J:105-175
> #168.11.9/K:105-175 #168.11.10/L:105-175 #168.12.1/C:105-175
> #168.12.2/D:105-175 #168.12.3/E:105-175 #168.12.4/F:105-175
> #168.12.5/G:105-175 #168.12.6/H:105-175 #168.12.7/I:105-175
> #168.12.8/J:105-175 #168.12.9/K:105-175 #168.12.10/L:105-175
> #168.13.1/C:105-175 #168.13.2/D:105-175 #168.13.3/E:105-175
> #168.13.4/F:105-175 #168.13.5/G:105-175 #168.13.6/H:105-175
> #168.13.7/I:105-175 #168.13.8/J:105-175 #168.13.9/K:105-175
> #168.13.10/L:105-175 #168.14.1/C:105-175 #168.14.2/D:105-175
> #168.14.3/E:105-175 #168.14.4/F:105-175 #168.14.5/G:105-175
> #168.14.6/H:105-175 #168.14.7/I:105-175 #168.14.8/J:105-175
> #168.14.9/K:105-175 #168.14.10/L:105-175 #168.15.1/C:105-175
> #168.15.2/D:105-175 #168.15.3/E:105-175 #168.15.4/F:105-175
> #168.15.5/G:105-175 #168.15.6/H:105-175 #168.15.7/I:105-175
> #168.15.8/J:105-175 #168.15.9/K:105-175 #168.15.10/L:105-175
> #168.16.1/C:105-175 #168.16.2/D:105-175 #168.16.3/E:105-175
> #168.16.4/F:105-175 #168.16.5/G:105-175 #168.16.6/H:105-175
> #168.16.7/I:105-175 #168.16.8/J:105-175 #168.16.9/K:105-175
> #168.16.10/L:105-175 #168.17.1/C:105-175 #168.17.2/D:105-175
> #168.17.3/E:105-175 #168.17.4/F:105-175 #168.17.5/G:105-175
> #168.17.6/H:105-175 #168.17.7/I:105-175 #168.17.8/J:105-175
> #168.17.9/K:105-175 #168.17.10/L:105-175 #168.18.1/C:105-175
> #168.18.2/D:105-175 #168.18.3/E:105-175 #168.18.4/F:105-175
> #168.18.5/G:105-175 #168.18.6/H:105-175 #168.18.7/I:105-175
> #168.18.8/J:105-175 #168.18.9/K:105-175 #168.18.10/L:105-175
103680 atoms, 104040 bonds, 12780 residues, 180 models selected
> select #168.1.1/C:78-105 #168.1.2/D:78-105 #168.1.3/E:78-105
> #168.1.4/F:78-105 #168.1.5/G:78-105 #168.1.6/H:78-105 #168.1.7/I:78-105
> #168.1.8/J:78-105 #168.1.9/K:78-105 #168.1.10/L:78-105 #168.2.1/C:78-105
> #168.2.2/D:78-105 #168.2.3/E:78-105 #168.2.4/F:78-105 #168.2.5/G:78-105
> #168.2.6/H:78-105 #168.2.7/I:78-105 #168.2.8/J:78-105 #168.2.9/K:78-105
> #168.2.10/L:78-105 #168.3.1/C:78-105 #168.3.2/D:78-105 #168.3.3/E:78-105
> #168.3.4/F:78-105 #168.3.5/G:78-105 #168.3.6/H:78-105 #168.3.7/I:78-105
> #168.3.8/J:78-105 #168.3.9/K:78-105 #168.3.10/L:78-105 #168.4.1/C:78-105
> #168.4.2/D:78-105 #168.4.3/E:78-105 #168.4.4/F:78-105 #168.4.5/G:78-105
> #168.4.6/H:78-105 #168.4.7/I:78-105 #168.4.8/J:78-105 #168.4.9/K:78-105
> #168.4.10/L:78-105 #168.5.1/C:78-105 #168.5.2/D:78-105 #168.5.3/E:78-105
> #168.5.4/F:78-105 #168.5.5/G:78-105 #168.5.6/H:78-105 #168.5.7/I:78-105
> #168.5.8/J:78-105 #168.5.9/K:78-105 #168.5.10/L:78-105 #168.6.1/C:78-105
> #168.6.2/D:78-105 #168.6.3/E:78-105 #168.6.4/F:78-105 #168.6.5/G:78-105
> #168.6.6/H:78-105 #168.6.7/I:78-105 #168.6.8/J:78-105 #168.6.9/K:78-105
> #168.6.10/L:78-105 #168.7.1/C:78-105 #168.7.2/D:78-105 #168.7.3/E:78-105
> #168.7.4/F:78-105 #168.7.5/G:78-105 #168.7.6/H:78-105 #168.7.7/I:78-105
> #168.7.8/J:78-105 #168.7.9/K:78-105 #168.7.10/L:78-105 #168.8.1/C:78-105
> #168.8.2/D:78-105 #168.8.3/E:78-105 #168.8.4/F:78-105 #168.8.5/G:78-105
> #168.8.6/H:78-105 #168.8.7/I:78-105 #168.8.8/J:78-105 #168.8.9/K:78-105
> #168.8.10/L:78-105 #168.9.1/C:78-105 #168.9.2/D:78-105 #168.9.3/E:78-105
> #168.9.4/F:78-105 #168.9.5/G:78-105 #168.9.6/H:78-105 #168.9.7/I:78-105
> #168.9.8/J:78-105 #168.9.9/K:78-105 #168.9.10/L:78-105 #168.10.1/C:78-105
> #168.10.2/D:78-105 #168.10.3/E:78-105 #168.10.4/F:78-105 #168.10.5/G:78-105
> #168.10.6/H:78-105 #168.10.7/I:78-105 #168.10.8/J:78-105 #168.10.9/K:78-105
> #168.10.10/L:78-105 #168.11.1/C:78-105 #168.11.2/D:78-105 #168.11.3/E:78-105
> #168.11.4/F:78-105 #168.11.5/G:78-105 #168.11.6/H:78-105 #168.11.7/I:78-105
> #168.11.8/J:78-105 #168.11.9/K:78-105 #168.11.10/L:78-105 #168.12.1/C:78-105
> #168.12.2/D:78-105 #168.12.3/E:78-105 #168.12.4/F:78-105 #168.12.5/G:78-105
> #168.12.6/H:78-105 #168.12.7/I:78-105 #168.12.8/J:78-105 #168.12.9/K:78-105
> #168.12.10/L:78-105 #168.13.1/C:78-105 #168.13.2/D:78-105 #168.13.3/E:78-105
> #168.13.4/F:78-105 #168.13.5/G:78-105 #168.13.6/H:78-105 #168.13.7/I:78-105
> #168.13.8/J:78-105 #168.13.9/K:78-105 #168.13.10/L:78-105 #168.14.1/C:78-105
> #168.14.2/D:78-105 #168.14.3/E:78-105 #168.14.4/F:78-105 #168.14.5/G:78-105
> #168.14.6/H:78-105 #168.14.7/I:78-105 #168.14.8/J:78-105 #168.14.9/K:78-105
> #168.14.10/L:78-105 #168.15.1/C:78-105 #168.15.2/D:78-105 #168.15.3/E:78-105
> #168.15.4/F:78-105 #168.15.5/G:78-105 #168.15.6/H:78-105 #168.15.7/I:78-105
> #168.15.8/J:78-105 #168.15.9/K:78-105 #168.15.10/L:78-105 #168.16.1/C:78-105
> #168.16.2/D:78-105 #168.16.3/E:78-105 #168.16.4/F:78-105 #168.16.5/G:78-105
> #168.16.6/H:78-105 #168.16.7/I:78-105 #168.16.8/J:78-105 #168.16.9/K:78-105
> #168.16.10/L:78-105 #168.17.1/C:78-105 #168.17.2/D:78-105 #168.17.3/E:78-105
> #168.17.4/F:78-105 #168.17.5/G:78-105 #168.17.6/H:78-105 #168.17.7/I:78-105
> #168.17.8/J:78-105 #168.17.9/K:78-105 #168.17.10/L:78-105 #168.18.1/C:78-105
> #168.18.2/D:78-105 #168.18.3/E:78-105 #168.18.4/F:78-105 #168.18.5/G:78-105
> #168.18.6/H:78-105 #168.18.7/I:78-105 #168.18.8/J:78-105 #168.18.9/K:78-105
> #168.18.10/L:78-105
41040 atoms, 41940 bonds, 5040 residues, 180 models selected
1 [ID: 1] region 180 chains [1-28] RMSD: 453.163
> select #168.1.1/C #168.1.2/D #168.1.3/E #168.1.4/F #168.1.5/G #168.1.6/H
> #168.1.7/I #168.1.8/J #168.1.9/K #168.1.10/L #168.2.1/C #168.2.2/D
> #168.2.3/E #168.2.4/F #168.2.5/G #168.2.6/H #168.2.7/I #168.2.8/J #168.2.9/K
> #168.2.10/L #168.3.1/C #168.3.2/D #168.3.3/E #168.3.4/F #168.3.5/G
> #168.3.6/H #168.3.7/I #168.3.8/J #168.3.9/K #168.3.10/L #168.4.1/C
> #168.4.2/D #168.4.3/E #168.4.4/F #168.4.5/G #168.4.6/H #168.4.7/I #168.4.8/J
> #168.4.9/K #168.4.10/L #168.5.1/C #168.5.2/D #168.5.3/E #168.5.4/F
> #168.5.5/G #168.5.6/H #168.5.7/I #168.5.8/J #168.5.9/K #168.5.10/L
> #168.6.1/C #168.6.2/D #168.6.3/E #168.6.4/F #168.6.5/G #168.6.6/H #168.6.7/I
> #168.6.8/J #168.6.9/K #168.6.10/L #168.7.1/C #168.7.2/D #168.7.3/E
> #168.7.4/F #168.7.5/G #168.7.6/H #168.7.7/I #168.7.8/J #168.7.9/K
> #168.7.10/L #168.8.1/C #168.8.2/D #168.8.3/E #168.8.4/F #168.8.5/G
> #168.8.6/H #168.8.7/I #168.8.8/J #168.8.9/K #168.8.10/L #168.9.1/C
> #168.9.2/D #168.9.3/E #168.9.4/F #168.9.5/G #168.9.6/H #168.9.7/I #168.9.8/J
> #168.9.9/K #168.9.10/L #168.10.1/C #168.10.2/D #168.10.3/E #168.10.4/F
> #168.10.5/G #168.10.6/H #168.10.7/I #168.10.8/J #168.10.9/K #168.10.10/L
> #168.11.1/C #168.11.2/D #168.11.3/E #168.11.4/F #168.11.5/G #168.11.6/H
> #168.11.7/I #168.11.8/J #168.11.9/K #168.11.10/L #168.12.1/C #168.12.2/D
> #168.12.3/E #168.12.4/F #168.12.5/G #168.12.6/H #168.12.7/I #168.12.8/J
> #168.12.9/K #168.12.10/L #168.13.1/C #168.13.2/D #168.13.3/E #168.13.4/F
> #168.13.5/G #168.13.6/H #168.13.7/I #168.13.8/J #168.13.9/K #168.13.10/L
> #168.14.1/C #168.14.2/D #168.14.3/E #168.14.4/F #168.14.5/G #168.14.6/H
> #168.14.7/I #168.14.8/J #168.14.9/K #168.14.10/L #168.15.1/C #168.15.2/D
> #168.15.3/E #168.15.4/F #168.15.5/G #168.15.6/H #168.15.7/I #168.15.8/J
> #168.15.9/K #168.15.10/L #168.16.1/C #168.16.2/D #168.16.3/E #168.16.4/F
> #168.16.5/G #168.16.6/H #168.16.7/I #168.16.8/J #168.16.9/K #168.16.10/L
> #168.17.1/C #168.17.2/D #168.17.3/E #168.17.4/F #168.17.5/G #168.17.6/H
> #168.17.7/I #168.17.8/J #168.17.9/K #168.17.10/L #168.18.1/C #168.18.2/D
> #168.18.3/E #168.18.4/F #168.18.5/G #168.18.6/H #168.18.7/I #168.18.8/J
> #168.18.9/K #168.18.10/L
143820 atoms, 145260 bonds, 17640 residues, 180 models selected
> select #168.1.1/C #168.1.2/D #168.1.3/E #168.1.4/F #168.1.5/G #168.1.6/H
> #168.1.7/I #168.1.8/J #168.1.9/K #168.1.10/L #168.2.1/C #168.2.2/D
> #168.2.3/E #168.2.4/F #168.2.5/G #168.2.6/H #168.2.7/I #168.2.8/J #168.2.9/K
> #168.2.10/L #168.3.1/C #168.3.2/D #168.3.3/E #168.3.4/F #168.3.5/G
> #168.3.6/H #168.3.7/I #168.3.8/J #168.3.9/K #168.3.10/L #168.4.1/C
> #168.4.2/D #168.4.3/E #168.4.4/F #168.4.5/G #168.4.6/H #168.4.7/I #168.4.8/J
> #168.4.9/K #168.4.10/L #168.5.1/C #168.5.2/D #168.5.3/E #168.5.4/F
> #168.5.5/G #168.5.6/H #168.5.7/I #168.5.8/J #168.5.9/K #168.5.10/L
> #168.6.1/C #168.6.2/D #168.6.3/E #168.6.4/F #168.6.5/G #168.6.6/H #168.6.7/I
> #168.6.8/J #168.6.9/K #168.6.10/L #168.7.1/C #168.7.2/D #168.7.3/E
> #168.7.4/F #168.7.5/G #168.7.6/H #168.7.7/I #168.7.8/J #168.7.9/K
> #168.7.10/L #168.8.1/C #168.8.2/D #168.8.3/E #168.8.4/F #168.8.5/G
> #168.8.6/H #168.8.7/I #168.8.8/J #168.8.9/K #168.8.10/L #168.9.1/C
> #168.9.2/D #168.9.3/E #168.9.4/F #168.9.5/G #168.9.6/H #168.9.7/I #168.9.8/J
> #168.9.9/K #168.9.10/L #168.10.1/C #168.10.2/D #168.10.3/E #168.10.4/F
> #168.10.5/G #168.10.6/H #168.10.7/I #168.10.8/J #168.10.9/K #168.10.10/L
> #168.11.1/C #168.11.2/D #168.11.3/E #168.11.4/F #168.11.5/G #168.11.6/H
> #168.11.7/I #168.11.8/J #168.11.9/K #168.11.10/L #168.12.1/C #168.12.2/D
> #168.12.3/E #168.12.4/F #168.12.5/G #168.12.6/H #168.12.7/I #168.12.8/J
> #168.12.9/K #168.12.10/L #168.13.1/C #168.13.2/D #168.13.3/E #168.13.4/F
> #168.13.5/G #168.13.6/H #168.13.7/I #168.13.8/J #168.13.9/K #168.13.10/L
> #168.14.1/C #168.14.2/D #168.14.3/E #168.14.4/F #168.14.5/G #168.14.6/H
> #168.14.7/I #168.14.8/J #168.14.9/K #168.14.10/L #168.15.1/C #168.15.2/D
> #168.15.3/E #168.15.4/F #168.15.5/G #168.15.6/H #168.15.7/I #168.15.8/J
> #168.15.9/K #168.15.10/L #168.16.1/C #168.16.2/D #168.16.3/E #168.16.4/F
> #168.16.5/G #168.16.6/H #168.16.7/I #168.16.8/J #168.16.9/K #168.16.10/L
> #168.17.1/C #168.17.2/D #168.17.3/E #168.17.4/F #168.17.5/G #168.17.6/H
> #168.17.7/I #168.17.8/J #168.17.9/K #168.17.10/L #168.18.1/C #168.18.2/D
> #168.18.3/E #168.18.4/F #168.18.5/G #168.18.6/H #168.18.7/I #168.18.8/J
> #168.18.9/K #168.18.10/L
143820 atoms, 145260 bonds, 17640 residues, 180 models selected
1 [ID: 1] region 180 chains [1-98] RMSD: 454.151
> show sel surfaces
> select add #168
177300 atoms, 179100 bonds, 21960 residues, 559 models selected
> select subtract #168
180 models selected
> select add #167
172890 atoms, 175770 bonds, 22500 residues, 199 models selected
> select add #169
246672 atoms, 250848 bonds, 31824 residues, 218 models selected
> select subtract #169
172890 atoms, 175770 bonds, 22500 residues, 19 models selected
> show sel surfaces
> select add #169
246672 atoms, 250848 bonds, 31824 residues, 56 models selected
> select subtract #167
73782 atoms, 75078 bonds, 9324 residues, 37 models selected
> show sel surfaces
> select clear
> view Side1
> view name Side1
> save /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure2.cxs includeMaps true
> hide #!16 models
> hide #!52 models
> hide #!53 models
> hide #!58 models
> hide #!59 models
> hide #!65 models
> hide #!71-79 models
> hide #!97 models
> hide #!123 models
> hide #!312-316 models
> hide #!513-514 models
> view Tilt
> show #!313 models
> view Tilt
> save /Users/shoichitachiyama/Desktop/Tilt1.png supersample 2
> transparentBackground true
> show #!486.14 models
> hide #!486.14 models
> show #!486.14 models
> show #!502.14 models
> show #!501.14 models
> show #!488.14 models
> save /Users/shoichitachiyama/Desktop/Tilt1.png supersample 2
> transparentBackground true
> view orient
> hide #!484 models
> hide #!313 models
> show #!486.15 models
> lighting simple
> show #!486.16 models
> show #!486.17 models
> show #!486.18 models
> show #!486.3 models
> show #!486.2 models
> show #!486.1 models
> show #!488.1 models
> show #!488.2 models
> show #!488.3 models
> show #!488.15 models
> show #!488.16 models
> show #!488.17 models
> show #!488.18 models
> show #!501.1 models
> show #!501.2 models
> show #!501.3 models
> show #!501.15 models
> show #!501.16 models
> show #!501.17 models
> show #!501.18 models
> show #!502.1 models
> show #!502.2 models
> show #!502.3 models
> show #!502.15 models
> show #!502.16 models
> show #!502.17 models
> show #!502.18 models
> lighting soft
> save /Users/shoichitachiyama/Desktop/Top.png supersample 2
> transparentBackground true
> lighting simple
> hide #!486.1 models
> hide #!486.2 models
> hide #!486.3 models
> hide #!486.15 models
> hide #!486.16 models
> hide #!486.17 models
> hide #!486.18 models
> hide #!488.1 models
> hide #!488.2 models
> hide #!488.3 models
> hide #!488.15 models
> hide #!488.16 models
> hide #!488.17 models
> hide #!488.18 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> hide #!501.18 models
> hide #!501.17 models
> hide #!501.16 models
> hide #!501.15 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!502.3 models
> hide #!502.18 models
> hide #!502.17 models
> hide #!502.16 models
> hide #!502.15 models
> view Side1
> hide #!167.10 models
> hide #!167.11 models
> hide #!167.12 models
> hide #!167.9 models
> hide #!167.8 models
> hide #!167.7 models
> hide #!169.10 models
> hide #!169.11 models
> hide #!169.12 models
> hide #!169.9 models
> hide #!169.8 models
> hide #!169.7 models
> hide #!168.10 models
> hide #!168.9 models
> hide #!168.8 models
> hide #!168.7 models
> hide #!168.11 models
> hide #!168.12 models
> hide #!183.11 models
> hide #!183.12 models
> hide #!183.13 models
> hide #!183.10 models
> hide #!183.9 models
> hide #!183.8 models
> hide #!184.12 models
> hide #!184.13 models
> hide #!184.14 models
> show #!184.14 models
> hide #!184.15 models
> show #!184.15 models
> hide #!184.9 models
> hide #!184.8 models
> hide #!184.11 models
> hide #!184.30 models
> hide #!184.31 models
> hide #!184.29 models
> hide #!184.28 models
> hide #!184.27 models
> hide #!185.48 models
> hide #!185.47 models
> hide #!185.44 models
> show #!185.44 models
> hide #!185.51 models
> hide #!185.52 models
> hide #!185.13 models
> hide #!185.14 models
> view Side1
[Repeated 1 time(s)]
> lighting soft
> lighting simple
> hide #!185.17 models
> hide #!185.18 models
> hide #!184.14 models
> hide #!184.32 models
> hide #!184.26 models
> view Side1
> lighting soft
> show #!16 models
> show #!52-53 models
> show #!58-59 models
> show #!71-79 models
> show #!97 models
> show #!123 models
> show #!312-316 models
> show #!513 models
> show #!514 models
> show #!65 models
> save /Users/shoichitachiyama/Desktop/Side.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/HP-
> Grant-2023-2024/Chimera_Grant_July_2024/New_figiure2.cxs includeMaps true
——— End of log from Fri Jul 5 20:17:51 2024 ———
opened ChimeraX session
> color #20-37 #929292ff models
> color #313-316 #d5d5d5ff models
> color #484 #d5d5d5ff models
> color #16 #727272ff models
> color #513-514 #727272ff models
> color #312 #727272ff models
> color #97 #727272ff models
> show #!96 models
> hide #!96 models
> color #53 #92aa93ff models
> color #182 #5da36dff models
> hide #!52 models
> show #!52 models
> color #52 #727272ff models
> hide #!65 models
> show #!65 models
> color #65 #727272ff models
> color #63 #727272ff models
> view Side1`
Expected an objects specifier or a view name or a keyword
> view Side1
> hide #!187 models
> hide #!259 models
> show #!259 models
> show #!259.1 models
> show #!259.2 models
> show #!259.3 models
> show #!259.4 models
> show #!259.5 models
> show #!259.6 models
> show #!259.7 models
> show #!259.8 models
> show #!259.9 models
> show #!259.10 models
> show #!259.11 models
> show #!259.12 models
> hide #!259.11 models
> hide #!259.12 models
> show #!259.13 models
> show #!259.14 models
> show #!259.15 models
> show #!259.11 models
> show #!259.12 models
> show #!259.16 models
> show #!259.17 models
> show #!259.18 models
> show #!259.19 models
> show #!259.20 models
> show #!259.21 models
> view Side1
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-view.cxs
> includeMaps true
> hide #!1-166 models
> hide #!259 models
> hide #!312-316 models
> hide #!513 models
> hide #!514 models
> hide #!501 models
> hide #!502 models
> turn x 90
> hide #!488.4 models
> hide #!488.5 models
> hide #!488.14 models
> hide #!488.13 models
> hide #!488.12 models
> hide #!488.11 models
> hide #!488.10 models
> hide #!488.9 models
> hide #!488.8 models
> hide #!486.14 models
> hide #!486.13 models
> hide #!486.12 models
> hide #!486.11 models
> hide #!486.10 models
> hide #!486.9 models
> hide #!486.8 models
> show #!486.8 models
> hide #!185 models
> hide #!182 models
> hide #!488.7 models
> hide #!488.6 models
> show #!488.6 models
> hide #!486.4 models
> hide #!486.5 models
> hide #!486.6 models
> show #!486.6 models
> hide #!486.8 models
> show #!488.5 models
> hide #!488.5 models
> show #!488.7 models
> hide #!167 models
> hide #!168 models
> hide #!169 models
> hide #!183.1 models
> hide #!183.2 models
> hide #!183.3 models
> hide #!183.4 models
> hide #!183.5 models
> hide #!183.6 models
> hide #!183.7 models
> hide #!183.14 models
> hide #!183.15 models
> hide #!183.16 models
> show #!183.16 models
> hide #!184.1 models
> hide #!184.2 models
> show #!184.2 models
> hide #!184.3 models
> hide #!184.4 models
> hide #!184.5 models
> hide #!184.6 models
> hide #!184.7 models
> hide #!184.10 models
> hide #!184.15 models
> hide #!184.16 models
> hide #!184.17 models
> show #!184.17 models
> hide #!184.18 models
> hide #!184.19 models
> hide #!184.20 models
> hide #!184.21 models
> hide #!184.22 models
> hide #!184.23 models
> hide #!184.24 models
> hide #!184.25 models
> hide #!184.33 models
> hide #!184.34 models
> color #486 #52cdd6ff models
> color #488 #52cdd6ff models
> save /Users/shoichitachiyama/Desktop/Zoom-PflAB.png supersample 2
> transparentBackground true
> turn x 10
> turn x -10
> turn x -30
[Repeated 1 time(s)]
> show #!501 models
> hide #!501.4 models
> hide #!501.5 models
> hide #!501.6 models
> hide #!501.7 models
> show #!501.7 models
> hide #!501.8 models
> hide #!501.14 models
> hide #!501.13 models
> hide #!501.12 models
> hide #!501.11 models
> hide #!501.10 models
> show #!502 models
> hide #!502.4 models
> hide #!502.5 models
> hide #!502.9 models
> hide #!502.8 models
> hide #!502.7 models
> show #!502.5 models
> hide #!502.5 models
> show #!501.8 models
> hide #!501.8 models
> hide #!501.7 models
> show #!501.7 models
> show #!501.6 models
> hide #!502.6 models
> hide #!502.10 models
> hide #!502.11 models
> hide #!502.12 models
> hide #!501.9 models
> save /Users/shoichitachiyama/Desktop/Zoom-PflAB-60degree.png supersample 2
> transparentBackground true
> color #501-502 #52cdd6ff models
> show #!488.8 models
> hide #!488.8 models
> show #!501.8 models
> hide #!501.8 models
> show #!502.12 models
> hide #!502.12 models
> show #!502.15 models
> hide #!502.15 models
> hide #!502.13 models
> show #!502.13 models
> hide #!502.14 models
> show #!502.14 models
> hide #!502.14 models
> hide #!502.13 models
> show #!502.12 models
> hide #!502.12 models
> show #!502.2 models
> hide #!502.2 models
> show #!502.10 models
> hide #!502.10 models
> show #!502.13 models
> hide #!502.13 models
> show #!502.2 models
> hide #!502.2 models
> show #!502.1 models
> hide #!502.1 models
> show #!502.5 models
> hide #!502.5 models
> show #!502.6 models
> save /Users/shoichitachiyama/Desktop/Zoom-PflAB-60degree.png supersample 2
> transparentBackground true
> turn -60
Expected an axis vector or a keyword
> turn x -60
> turn x 60
[Repeated 1 time(s)]
> show #!184.16 models
> hide #!184.16 models
> show #!184.18 models
> hide #!184.36 models
> show #!184.36 models
> show #!184.34 models
> hide #!184.34 models
> show #!184.1 models
> hide #!184.1 models
> show #!184.3 models
> hide #!184.3 models
> show #!184.3 models
> show #!184.4 models
> show #!184.16 models
> show #!184.15 models
> show #!184.14 models
> show #!184.5 models
> show #!184.6 models
> hide #!184.5 models
> hide #!184.4 models
> hide #!184.3 models
> hide #!184.2 models
> hide #!184.14 models
> show #!184.14 models
> hide #!184.14 models
> hide #!184.15 models
> hide #!184.16 models
> hide #!184.17 models
> show #!184.17 models
> hide #!184.18 models
> show #!184.18 models
> hide #!184.35 models
> show #!184.35 models
> hide #!184.35 models
> hide #!184.36 models
> show #!184.36 models
> show #!184.33 models
> hide #!184.33 models
> show #!184.22 models
> hide #!184.22 models
> show #!184.24 models
> hide #!184.24 models
> show #!184.20 models
> hide #!184.18 models
> show #!184.18 models
> hide #!184.17 models
> show #!184.19 models
> hide #!184.36 models
> hide #!183.18 models
> show #!183.18 models
> hide #!183.17 models
> hide #!183.16 models
> show #!183.1 models
> show #!183.2 models
> show #!501.5 models
> hide #!501.5 models
> show #!501.8 models
> hide #!501.8 models
> show #!501.8 models
> show #!501.9 models
> show #!501.10 models
> show #!501.11 models
> hide #!501.6 models
> hide #!501.7 models
> show #!502.7 models
> hide #!502.7 models
> show #!502.8 models
> show #!502.9 models
> show #!502.10 models
> hide #!502.6 models
> hide #!486.7 models
> hide #!486.6 models
> show #!486.8 models
> show #!486.9 models
> show #!486.10 models
> show #!486.11 models
> hide #!486.11 models
> show #!488.8 models
> hide #!488.7 models
> hide #!488.6 models
> show #!488.9 models
> show #!488.10 models
> hide #!488.10 models
> hide #!501.11 models
> hide #!502.10 models
> view orient
> save /Users/shoichitachiyama/Desktop/Zoom-PflAB.png supersample 2
> transparentBackground true
> turn x -60
> turn x 60
> turn x -30
> turn x 30
> turn x -45
> save /Users/shoichitachiyama/Desktop/Zoom-PflAB-45degree.png supersample 2
> transparentBackground true
> hide #!501.8 models
> hide #!501.9 models
> hide #!501.10 models
> hide #!501 models
> hide #!488 models
> hide #!486 models
> hide #!502 models
> hide #!184 models
> hide #!183 models
> show #!185 models
> show #!185.13 models
> show #!185.14 models
> show #!185.17 models
> show #!185.18 models
> show #!185.47 models
> show #!185.48 models
> show #!185.51 models
> show #!185.52 models
> show #!182 models
> show #!52 models
> view orient
> ui tool show "Side View"
> show #!20 models
> show #!20-37 models
> turn x -45
> view orient
> turn x 90
> undo
> turn x 90
Drag select of 7e80.cif_0 SES surface, 7e80.cif_1 SES surface, 7e80.cif_2 SES
surface, 16284 of 16886 triangles, 7e80.cif_3 SES surface, 13859 of 16690
triangles, 7e80.cif_4 SES surface, 10838 of 16704 triangles, 7e80.cif_5 SES
surface, 17562 of 30856 triangles, 7e80.cif_6 SES surface, 27055 of 30516
triangles, 7e80.cif_7 SES surface, 22331 of 30548 triangles, 7e80.cif_8 SES
surface, 14121 of 30920 triangles, 7e80.cif_9 SES surface, 11102 of 30874
triangles, 7e80.cif_A SES surface, 7e80.cif_B SES surface, 7e80.cif_C SES
surface, 7e80.cif_D SES surface, 7e80.cif_DA SES surface, 7e80.cif_DB SES
surface, 7e80.cif_DC SES surface, 7e80.cif_DD SES surface, 7e80.cif_DE SES
surface, 7e80.cif_DF SES surface, 7e80.cif_DG SES surface, 7e80.cif_DH SES
surface, 7e80.cif_DI SES surface, 7e80.cif_DJ SES surface, 7e80.cif_DK SES
surface, 7e80.cif_E SES surface, 7e80.cif_F SES surface, 7e80.cif_G SES
surface, 7e80.cif_H SES surface, 7e80.cif_I SES surface, 7e80.cif_J SES
surface, 7e80.cif_K SES surface, 7e80.cif_L SES surface, 7e80.cif_M SES
surface, 7e80.cif_N SES surface, 7e80.cif_O SES surface, 7e80.cif_P SES
surface, 7e80.cif_Q SES surface, 7e80.cif_R SES surface, 7e80.cif_S SES
surface, 7e80.cif_T SES surface, 7e80.cif_U SES surface, 7e80.cif_V SES
surface, 7e80.cif_W SES surface, 7e80.cif_X SES surface, 7e80.cif_a SES
surface, 237621 of 247246 triangles, 7e80.cif_b SES surface, 243422 of 245104
triangles, 7e80.cif_c SES surface, 242921 of 249562 triangles, 7e80.cif_d SES
surface, 232760 of 248600 triangles, 7e80.cif_e SES surface, 218091 of 247012
triangles, 7e80.cif_f SES surface, 104071 of 140942 triangles, 7e80.cif_g SES
surface, 112169 of 142452 triangles, 7e80.cif_h SES surface, 95217 of 136692
triangles, 7e80.cif_i SES surface, 88077 of 143452 triangles, 7e80.cif_j SES
surface, 75683 of 136828 triangles, 7e80.cif_k SES surface, 21838 of 125564
triangles, 7e80.cif_l SES surface, 39481 of 123460 triangles, 7e80.cif_m SES
surface, 31670 of 121998 triangles, 7e80.cif_n SES surface, 10092 of 122516
triangles, 7e80.cif_o SES surface, 3057 of 127654 triangles, 7e80.cif_p SES
surface, 64974 of 136752 triangles
Drag select of 7e80.cif_0 SES surface, 16696 of 16928 triangles, 7e80.cif_1
SES surface, 7e80.cif_2 SES surface, 14203 of 16886 triangles, 7e80.cif_3 SES
surface, 10774 of 16690 triangles, 7e80.cif_4 SES surface, 7703 of 16704
triangles, 7e80.cif_5 SES surface, 14182 of 30856 triangles, 7e80.cif_6 SES
surface, 20888 of 30516 triangles, 7e80.cif_7 SES surface, 16575 of 30548
triangles, 7e80.cif_8 SES surface, 11409 of 30920 triangles, 7e80.cif_9 SES
surface, 8873 of 30874 triangles, 7e80.cif_A SES surface, 7e80.cif_B SES
surface, 7e80.cif_C SES surface, 7e80.cif_D SES surface, 7e80.cif_DA SES
surface, 358092 of 374244 triangles, 7e80.cif_DB SES surface, 7e80.cif_DC SES
surface, 7e80.cif_DD SES surface, 7e80.cif_DE SES surface, 7e80.cif_DF SES
surface, 7e80.cif_DG SES surface, 348432 of 386022 triangles, 7e80.cif_DH SES
surface, 7e80.cif_DI SES surface, 7e80.cif_DJ SES surface, 7e80.cif_DK SES
surface, 7e80.cif_E SES surface, 7e80.cif_F SES surface, 7e80.cif_G SES
surface, 7e80.cif_H SES surface, 7e80.cif_I SES surface, 7e80.cif_J SES
surface, 7e80.cif_K SES surface, 7e80.cif_L SES surface, 7e80.cif_M SES
surface, 7e80.cif_N SES surface, 7e80.cif_O SES surface, 7e80.cif_P SES
surface, 7e80.cif_Q SES surface, 7e80.cif_R SES surface, 7e80.cif_S SES
surface, 7e80.cif_T SES surface, 7e80.cif_U SES surface, 7e80.cif_V SES
surface, 7e80.cif_W SES surface, 7e80.cif_X SES surface, 7e80.cif_a SES
surface, 232150 of 247246 triangles, 7e80.cif_b SES surface, 239663 of 245104
triangles, 7e80.cif_c SES surface, 239166 of 249562 triangles, 7e80.cif_d SES
surface, 221389 of 248600 triangles, 7e80.cif_e SES surface, 206711 of 247012
triangles, 7e80.cif_f SES surface, 94622 of 140942 triangles, 7e80.cif_g SES
surface, 100935 of 142452 triangles, 7e80.cif_h SES surface, 85669 of 136692
triangles, 7e80.cif_i SES surface, 78559 of 143452 triangles, 7e80.cif_j SES
surface, 66750 of 136828 triangles, 7e80.cif_k SES surface, 10517 of 125564
triangles, 7e80.cif_l SES surface, 29396 of 123460 triangles, 7e80.cif_m SES
surface, 21174 of 121998 triangles, 7e80.cif_n SES surface, 3465 of 122516
triangles, 7e80.cif_o SES surface, 546 of 127654 triangles, 7e80.cif_p SES
surface, 54810 of 136752 triangles
> hide
> #!52#!182.1-51,70-99#!185.1,3-4,7-8,13-14,17-18,21-22,25-26,29-30,33-34,37-38,41-42,44,47-48,51-52
> cartoons
> hide
> #!52#!182.1-51,70-99#!185.1,3-4,7-8,13-14,17-18,21-22,25-26,29-30,33-34,37-38,41-42,44,47-48,51-52
> surfaces
> show
> #!52#!182.1-51,70-99#!185.1,3-4,7-8,13-14,17-18,21-22,25-26,29-30,33-34,37-38,41-42,44,47-48,51-52
> surfaces
> select clear
Drag select of 7e80.cif_0 SES surface, 14989 of 16928 triangles, 7e80.cif_1
SES surface, 16055 of 16802 triangles, 7e80.cif_2 SES surface, 11637 of 16886
triangles, 7e80.cif_3 SES surface, 7952 of 16690 triangles, 7e80.cif_4 SES
surface, 4244 of 16704 triangles, 7e80.cif_5 SES surface, 11742 of 30856
triangles, 7e80.cif_6 SES surface, 16662 of 30516 triangles, 7e80.cif_7 SES
surface, 13812 of 30548 triangles, 7e80.cif_8 SES surface, 9702 of 30920
triangles, 7e80.cif_9 SES surface, 7182 of 30874 triangles, 7e80.cif_A SES
surface, 7e80.cif_B SES surface, 7e80.cif_C SES surface, 7e80.cif_D SES
surface, 7e80.cif_DA SES surface, 374240 of 374244 triangles, 7e80.cif_DB SES
surface, 7e80.cif_DC SES surface, 7e80.cif_DD SES surface, 7e80.cif_DE SES
surface, 7e80.cif_DF SES surface, 7e80.cif_DG SES surface, 384140 of 386022
triangles, 7e80.cif_DH SES surface, 7e80.cif_DI SES surface, 7e80.cif_DJ SES
surface, 7e80.cif_DK SES surface, 7e80.cif_E SES surface, 7e80.cif_F SES
surface, 7e80.cif_G SES surface, 7e80.cif_H SES surface, 7e80.cif_I SES
surface, 7e80.cif_J SES surface, 7e80.cif_K SES surface, 7e80.cif_L SES
surface, 7e80.cif_M SES surface, 7e80.cif_N SES surface, 7e80.cif_O SES
surface, 7e80.cif_P SES surface, 7e80.cif_Q SES surface, 7e80.cif_R SES
surface, 7e80.cif_S SES surface, 7e80.cif_T SES surface, 7e80.cif_U SES
surface, 7e80.cif_V SES surface, 7e80.cif_W SES surface, 7e80.cif_X SES
surface, 258930 of 260374 triangles, 7e80.cif_a SES surface, 222160 of 247246
triangles, 7e80.cif_b SES surface, 236438 of 245104 triangles, 7e80.cif_c SES
surface, 234044 of 249562 triangles, 7e80.cif_d SES surface, 211288 of 248600
triangles, 7e80.cif_e SES surface, 198712 of 247012 triangles, 7e80.cif_f SES
surface, 86324 of 140942 triangles, 7e80.cif_g SES surface, 93239 of 142452
triangles, 7e80.cif_h SES surface, 77713 of 136692 triangles, 7e80.cif_i SES
surface, 70808 of 143452 triangles, 7e80.cif_j SES surface, 58890 of 136828
triangles, 7e80.cif_k SES surface, 4506 of 125564 triangles, 7e80.cif_l SES
surface, 20227 of 123460 triangles, 7e80.cif_m SES surface, 11142 of 121998
triangles, 7e80.cif_n SES surface, 799 of 122516 triangles, 7e80.cif_p SES
surface, 45453 of 136752 triangles
> hide
> #!52#!182.1-51,70-99#!185.1,3-4,7-8,13-14,17-18,21-22,25-26,29-30,33-34,37-38,41-42,44,47-48,51-52
> surfaces
> show
> #!52#!182.1-51,70-99#!185.1,3-4,7-8,13-14,17-18,21-22,25-26,29-30,33-34,37-38,41-42,44,47-48,51-52
> surfaces
> select clear
[Repeated 1 time(s)]Drag select of 7e80.cif_DA SES surface, 121671 of 374244
triangles, 7e80.cif_DB SES surface, 11645 of 378114 triangles, 7e80.cif_DF SES
surface, 155809 of 382452 triangles, 7e80.cif_DG SES surface, 156791 of 386022
triangles, 7e80.cif_DH SES surface, 50509 of 387128 triangles
> hide
> #!52#!182.1-51,70-99#!185.1,3-4,7-8,13-14,17-18,21-22,25-26,29-30,33-34,37-38,41-42,44,47-48,51-52
> surfaces
> show
> #!52#!182.1-51,70-99#!185.1,3-4,7-8,13-14,17-18,21-22,25-26,29-30,33-34,37-38,41-42,44,47-48,51-52
> surfaces
> select clear
Drag select of New_FliF.pdb_AO SES surface, 6582 of 309342 triangles,
New_FliF.pdb_AP SES surface, 3071 of 306668 triangles
Drag select of New_FliF.pdb_AJ SES surface, 5351 of 307464 triangles,
New_FliF.pdb_AK SES surface, 16155 of 307150 triangles, New_FliF.pdb_AL SES
surface, 19976 of 308722 triangles, New_FliF.pdb_AM SES surface, 4792 of
307150 triangles, New_FliF.pdb_a SES surface, 4746 of 102848 triangles,
New_FliF.pdb_b SES surface, 294 of 101758 triangles
> select clear
> select add #52
114468 atoms, 116060 bonds, 18 pseudobonds, 15371 residues, 2 models selected
> hide sel surfaces
> hide sel cartoons
> show sel cartoons
> select clear
Drag select of 7237 residues
> select clear
> view orient
> turn x 90
Drag select of 12427 residues, 7 pseudobonds
> color sel #72727233 models
> hide sel cartoons
> turn x 90
[Repeated 2 time(s)]
> select add #52
114468 atoms, 116060 bonds, 18 pseudobonds, 15371 residues, 62 models selected
> show sel surfaces
> hide sel surfaces
> show sel surfaces
> select clear
> ui tool show "Side View"
> save /Users/shoichitachiyama/Desktop/FlgY_top.png supersample 2
> transparentBackground true
> turn x -35
> save /Users/shoichitachiyama/Desktop/FlgY_35.png supersample 2
> transparentBackground true
> select add #52
114468 atoms, 116060 bonds, 18 pseudobonds, 15371 residues, 62 models selected
> color #52 #727272ff models
> view Side1
> show #!53 models
> select subtract #52
77 models selected
> hide #!53 models
> show #!184 models
> show #!183 models
> show #!183.3 models
> show #!183.4 models
> show #!183.5 models
> show #!183.6 models
> show #!183.7 models
> show #!183.8 models
> show #!183.9 models
> hide #!183.8 models
> show #!183.11 models
> show #!183.8 models
> show #!183.10 models
> show #!183.12 models
> show #!183.13 models
> show #!183.14 models
> show #!183.15 models
> show #!183.16 models
> show #!183.17 models
> show #!184.1 models
> show #!184.2 models
> show #!184.3 models
> show #!184.4 models
> show #!184.5 models
> show #!184.7 models
> show #!184.8 models
> show #!184.9 models
> show #!184.10 models
> show #!184.11 models
> show #!184.12 models
> show #!184.13 models
> show #!184.14 models
> show #!184.15 models
> show #!184.16 models
> show #!184.17 models
> show #!184.21 models
> show #!184.22 models
> show #!184.23 models
> show #!184.24 models
> show #!184.25 models
> show #!184.26 models
> show #!184.27 models
> show #!184.28 models
> show #!184.29 models
> show #!184.30 models
> show #!184.31 models
> show #!184.32 models
> show #!184.33 models
> show #!184.34 models
> show #!184.35 models
> show #!184.36 models
> show #!180 models
> show #!167 models
> show #!167.7 models
> show #!167.8 models
> show #!167.9 models
> show #!167.10 models
> show #!167.11 models
> show #!167.12 models
> show #!166 models
> hide #!166 models
> show #!169 models
> show #!169.7 models
> show #!169.8 models
> show #!169.9 models
> show #!169.10 models
> show #!169.11 models
> show #!169.12 models
> show #!168 models
> show #!168.7 models
> show #!168.8 models
> show #!168.9 models
> show #!168.10 models
> show #!168.11 models
> show #!168.12 models
> hide #!168.12 models
> show #!168.12 models
> show #!486 models
> show #!488 models
> show #!486.1 models
> show #!486.3 models
> show #!486.4 models
> show #!486.5 models
> show #!486.6 models
> show #!486.7 models
> show #!486.2 models
> show #!486.11 models
> show #!486.12 models
> show #!486.13 models
> show #!486.14 models
> show #!486.15 models
> show #!486.16 models
> show #!486.17 models
> show #!486.18 models
> show #!488.1 models
> show #!488.2 models
> show #!488.3 models
> show #!488.5 models
> show #!488.6 models
> show #!488.7 models
> show #!488.10 models
> show #!488.11 models
> show #!488.12 models
> show #!488.13 models
> show #!488.14 models
> show #!488.15 models
> show #!488.16 models
> show #!488.17 models
> show #!488.18 models
> hide #!488.18 models
> show #!488.18 models
> show #!488.4 models
> show #!501 models
> show #!501.1 models
> show #!501.2 models
> show #!501.3 models
> show #!501.4 models
> show #!501.5 models
> show #!501.6 models
> show #!501.7 models
> show #!501.8 models
> show #!501.9 models
> show #!501.10 models
> show #!501.11 models
> show #!501.12 models
> show #!501.13 models
> show #!501.14 models
> show #!501.15 models
> show #!501.16 models
> show #!501.17 models
> show #!501.18 models
> show #!502 models
> show #!502.1 models
> show #!502.2 models
> show #!502.3 models
> show #!502.4 models
> show #!502.5 models
> show #!502.6 models
> show #!502.7 models
> show #!502.13 models
> show #!502.14 models
> show #!502.15 models
> show #!502.16 models
> show #!502.17 models
> show #!502.18 models
> hide #!502.18 models
> show #!502.18 models
> show #!502.10 models
> show #!502.11 models
> show #!502.12 models
> view orient
> show #!63 models
> show #!187 models
> hide #!187 models
> show #!259 models
> view orient
> save /Users/shoichitachiyama/Desktop/Final-model-top.png supersample 2
> transparentBackground true
> view Side1
> hide #!486.7 models
> show #!486.7 models
> hide #!486.14 models
> show #!486.14 models
> hide #!486.1 models
> hide #!486.2 models
> hide #!486.3 models
> hide #!486.18 models
> hide #!486.17 models
> hide #!486.16 models
> hide #!488.1 models
> hide #!488.2 models
> hide #!488.3 models
> show #!488.3 models
> hide #!488.3 models
> hide #!488.4 models
> show #!497 models
> hide #!497 models
> lighting simple
> hide #!488.18 models
> hide #!488.17 models
> hide #!488.16 models
> hide #!488.15 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> hide #!501.4 models
> hide #!501.18 models
> hide #!501.17 models
> hide #!501.16 models
> hide #!501.15 models
> show #!501.15 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!502.3 models
> hide #!502.18 models
> hide #!502.17 models
> hide #!502.16 models
> hide #!502.15 models
> view Side1
> turn x -35
> turn x 35
[Repeated 1 time(s)]
> lighting soft
> save /Users/shoichitachiyama/Desktop/Final-model-tilt.png supersample 2
> transparentBackground true
> show #!486.3 models
> hide #!486.3 models
> show #!488.4 models
> save /Users/shoichitachiyama/Desktop/Final-model-tilt.png supersample 2
> transparentBackground true
> hide #!52 models
> save /Users/shoichitachiyama/Desktop/Final-model-tilt.png supersample 2
> transparentBackground true
> show #!484 models
> show #!313 models
> view Side1
> turn x 35
> turn y 5
> view Side1
> turn x 90
> turn y 5
> turn y -5
> turn z -5
> turn z 5
[Repeated 1 time(s)]
> turn z 1
> turn x 90
[Repeated 2 time(s)]
> turn z 1
> turn z -1
> turn z 0.1
[Repeated 2 time(s)]
> view Side1
> turn x 90
> turn z 10
> turn z -10
> turn z 5
> turn z 1
> turn x 90
[Repeated 2 time(s)]
> turn z 0.1
> view name Side1
> turn x 35
> save /Users/shoichitachiyama/Desktop/Final-model-tilt35.png supersample 2
> transparentBackground true
> show #!316 models
> show #!312 models
> show #!513 models
> show #!514 models
> show #!96 models
> hide #!96 models
> show #!97 models
> show #!52 models
> show #!53 models
> show #!16 models
> show #!65 models
> view Side1
> show #!71 models
> show #!73 models
> show #!74 models
> show #!77 models
> show #!81 models
> hide #!81 models
> show #!79 models
> show #!78 models
> show #!76 models
> show #!75 models
> show #!86 models
> hide #!86 models
> show #!123 models
> show #!122 models
> hide #!122 models
> show #!121 models
> hide #!121 models
> hide #!123 models
> show #!86 models
> hide #!86 models
> show #60 models
> show #!59 models
> show #!58 models
> hide #60 models
> color #58-59 #b7916aff models
> color #71-84 #b7916aff models
> color #86 #b7916aff models
> hide #!167.1 models
> show #!167.1 models
> hide #!167.10 models
> hide #!167.11 models
> hide #!167.12 models
> hide #!167.13 models
> hide #!167.9 models
> hide #!167.8 models
> hide #!167.7 models
> show #!167.13 models
> hide #!168.10 models
> hide #!168.7 models
> hide #!168.8 models
> hide #!168.9 models
> hide #!168.14 models
> hide #!168.15 models
> show #!168.14 models
> hide #!168.11 models
> hide #!168.12 models
> show #!168.15 models
> hide #!169.10 models
> hide #!169.11 models
> hide #!169.12 models
> hide #!169.7 models
> hide #!169.8 models
> hide #!169.9 models
> hide #!180 models
> close #180
> hide #!185 models
> show #!185 models
> hide #!185.52 models
> hide #!185.51 models
> hide #!185.48 models
> hide #!185.47 models
> hide #!185.44 models
> hide #!185.42 models
> hide #!185.1 models
> show #!185.1 models
> hide #!185.1 models
> hide #!185.3 models
> show #!185.3 models
> hide #!185.14 models
> hide #!185.17 models
> hide #!185.13 models
> hide #!185.18 models
> hide #!183.13 models
> hide #!183.12 models
> hide #!183.11 models
> hide #!183.10 models
> hide #!183.9 models
> hide #!183.8 models
> hide #!183.7 models
> show #!183.7 models
> view Side1
[Repeated 1 time(s)]
> hide #!184.11 models
> hide #!184.12 models
> hide #!184.13 models
> hide #!184.14 models
> hide #!184.9 models
> hide #!184.29 models
> hide #!184.30 models
> hide #!184.31 models
> hide #!184.28 models
> hide #!184.27 models
> hide #!184.32 models
> hide #!184.8 models
> hide #!31 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> hide #!36 models
> hide #!37 models
> show #!37 models
> view Side1
> show #!185.13 models
> hide #!185.13 models
> show #!185.1 models
> show #!185.52 models
> hide #!185.52 models
> show #!185.42 models
> show #!185.44 models
> view Side1
> save /Users/shoichitachiyama/Desktop/Final-model-Side.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-view2.cxs
> includeMaps true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-view3.cxs
> includeMaps true
——— End of log from Tue Jul 9 07:42:16 2024 ———
opened ChimeraX session
> color #488 #4a9ed2ff models
> color #486 #4a9ed2ff models
> color #501 #4a9ed2ff models
> color #502 #4a9ed2ff models
> save /Users/shoichi/Desktop/Fig5A_08222024.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-
> view3-08222024.cxs includeMaps true
——— End of log from Thu Aug 22 13:00:43 2024 ———
opened ChimeraX session
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/New-Cring/8uox.cif
8uox.cif title:
Cryo-EM structure of a Counterclockwise locked form of the Salmonella enterica
Typhimurium flagellar C-ring, with C34 symmetry applied [more info...]
Chain information for 8uox.cif #72
---
Chain | Description | UniProt
A1 A2 A3 A4 A5 A6 A7 A8 A9 AA AB AC AD AE AF AG AH AI AJ AK AL AM AN AO AP AQ AR AS AT AU AV AW AX AY | Flagellar M-ring protein | FLIF_SALTY 1-560
B1 B2 B3 B4 B5 B6 B7 B8 B9 BA BB BC BD BE BF BG BH BI BJ BK BL BM BN BO BP BQ BR BS BT BU BV BW BX BY | Flagellar motor switch protein FliG | FLIG_SALTY 1-331
C1 C2 C3 C4 C5 C6 C7 C8 C9 CA CB CC CD CE CF CG CH CI CJ CK CL CM CN CO CP CQ CR CS CT CU CV CW CX CY | Flagellar motor switch protein FliM | FLIM_SALTY 1-334
D1 D2 D3 D4 D5 D6 D7 D8 D9 DA DB DC DD DE DF DG DH DI DJ DK DL DM DN DO DP DQ DR DS DT DU DV DW DX DY E1 E2 E3 E4 E5 E6 E7 E8 E9 EA EB EC ED EE EF EG EH EI EJ EK EL EM EN EO EP EQ ER ES ET EU EV EW EX EY F1 F2 F3 F4 F5 F6 F7 F8 F9 FA FB FC FD FE FF FG FH FI FJ FK FL FM FN FO FP FQ FR FS FT FU FV FW FX FY | Flagellar motor switch protein FliN | FLIN_SALTY 1-137
> lighting simple
> select add #72
244834 atoms, 247860 bonds, 30974 residues, 1 model selected
> view matrix models #72,1,0,0,153.6,0,1,0,-502.09,0,0,1,-292.39
> hide sel surfaces
> hide sel atoms
> show sel cartoons
> split 72
Expected a structures specifier or a keyword
> split #72
Split 8uox.cif (#72) into 204 models
Chain information for 8uox.cif A1 #72.1
---
Chain | Description
A1 | No description available
Chain information for 8uox.cif A2 #72.2
---
Chain | Description
A2 | No description available
Chain information for 8uox.cif A3 #72.3
---
Chain | Description
A3 | No description available
Chain information for 8uox.cif A4 #72.4
---
Chain | Description
A4 | No description available
Chain information for 8uox.cif A5 #72.5
---
Chain | Description
A5 | No description available
Chain information for 8uox.cif A6 #72.6
---
Chain | Description
A6 | No description available
Chain information for 8uox.cif A7 #72.7
---
Chain | Description
A7 | No description available
Chain information for 8uox.cif A8 #72.8
---
Chain | Description
A8 | No description available
Chain information for 8uox.cif A9 #72.9
---
Chain | Description
A9 | No description available
Chain information for 8uox.cif AA #72.10
---
Chain | Description
AA | No description available
Chain information for 8uox.cif AB #72.11
---
Chain | Description
AB | No description available
Chain information for 8uox.cif AC #72.12
---
Chain | Description
AC | No description available
Chain information for 8uox.cif AD #72.13
---
Chain | Description
AD | No description available
Chain information for 8uox.cif AE #72.14
---
Chain | Description
AE | No description available
Chain information for 8uox.cif AF #72.15
---
Chain | Description
AF | No description available
Chain information for 8uox.cif AG #72.16
---
Chain | Description
AG | No description available
Chain information for 8uox.cif AH #72.17
---
Chain | Description
AH | No description available
Chain information for 8uox.cif AI #72.18
---
Chain | Description
AI | No description available
Chain information for 8uox.cif AJ #72.19
---
Chain | Description
AJ | No description available
Chain information for 8uox.cif AK #72.20
---
Chain | Description
AK | No description available
Chain information for 8uox.cif AL #72.21
---
Chain | Description
AL | No description available
Chain information for 8uox.cif AM #72.22
---
Chain | Description
AM | No description available
Chain information for 8uox.cif AN #72.23
---
Chain | Description
AN | No description available
Chain information for 8uox.cif AO #72.24
---
Chain | Description
AO | No description available
Chain information for 8uox.cif AP #72.25
---
Chain | Description
AP | No description available
Chain information for 8uox.cif AQ #72.26
---
Chain | Description
AQ | No description available
Chain information for 8uox.cif AR #72.27
---
Chain | Description
AR | No description available
Chain information for 8uox.cif AS #72.28
---
Chain | Description
AS | No description available
Chain information for 8uox.cif AT #72.29
---
Chain | Description
AT | No description available
Chain information for 8uox.cif AU #72.30
---
Chain | Description
AU | No description available
Chain information for 8uox.cif AV #72.31
---
Chain | Description
AV | No description available
Chain information for 8uox.cif AW #72.32
---
Chain | Description
AW | No description available
Chain information for 8uox.cif AX #72.33
---
Chain | Description
AX | No description available
Chain information for 8uox.cif AY #72.34
---
Chain | Description
AY | No description available
Chain information for 8uox.cif B1 #72.35
---
Chain | Description
B1 | No description available
Chain information for 8uox.cif B2 #72.36
---
Chain | Description
B2 | No description available
Chain information for 8uox.cif B3 #72.37
---
Chain | Description
B3 | No description available
Chain information for 8uox.cif B4 #72.38
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Chain | Description
B4 | No description available
Chain information for 8uox.cif B5 #72.39
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Chain | Description
B5 | No description available
Chain information for 8uox.cif B6 #72.40
---
Chain | Description
B6 | No description available
Chain information for 8uox.cif B7 #72.41
---
Chain | Description
B7 | No description available
Chain information for 8uox.cif B8 #72.42
---
Chain | Description
B8 | No description available
Chain information for 8uox.cif B9 #72.43
---
Chain | Description
B9 | No description available
Chain information for 8uox.cif BA #72.44
---
Chain | Description
BA | No description available
Chain information for 8uox.cif BB #72.45
---
Chain | Description
BB | No description available
Chain information for 8uox.cif BC #72.46
---
Chain | Description
BC | No description available
Chain information for 8uox.cif BD #72.47
---
Chain | Description
BD | No description available
Chain information for 8uox.cif BE #72.48
---
Chain | Description
BE | No description available
Chain information for 8uox.cif BF #72.49
---
Chain | Description
BF | No description available
Chain information for 8uox.cif BG #72.50
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Chain | Description
BG | No description available
Chain information for 8uox.cif BH #72.51
---
Chain | Description
BH | No description available
Chain information for 8uox.cif BI #72.52
---
Chain | Description
BI | No description available
Chain information for 8uox.cif BJ #72.53
---
Chain | Description
BJ | No description available
Chain information for 8uox.cif BK #72.54
---
Chain | Description
BK | No description available
Chain information for 8uox.cif BL #72.55
---
Chain | Description
BL | No description available
Chain information for 8uox.cif BM #72.56
---
Chain | Description
BM | No description available
Chain information for 8uox.cif BN #72.57
---
Chain | Description
BN | No description available
Chain information for 8uox.cif BO #72.58
---
Chain | Description
BO | No description available
Chain information for 8uox.cif BP #72.59
---
Chain | Description
BP | No description available
Chain information for 8uox.cif BQ #72.60
---
Chain | Description
BQ | No description available
Chain information for 8uox.cif BR #72.61
---
Chain | Description
BR | No description available
Chain information for 8uox.cif BS #72.62
---
Chain | Description
BS | No description available
Chain information for 8uox.cif BT #72.63
---
Chain | Description
BT | No description available
Chain information for 8uox.cif BU #72.64
---
Chain | Description
BU | No description available
Chain information for 8uox.cif BV #72.65
---
Chain | Description
BV | No description available
Chain information for 8uox.cif BW #72.66
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Chain | Description
BW | No description available
Chain information for 8uox.cif BX #72.67
---
Chain | Description
BX | No description available
Chain information for 8uox.cif BY #72.68
---
Chain | Description
BY | No description available
Chain information for 8uox.cif C1 #72.69
---
Chain | Description
C1 | No description available
Chain information for 8uox.cif C2 #72.70
---
Chain | Description
C2 | No description available
Chain information for 8uox.cif C3 #72.71
---
Chain | Description
C3 | No description available
Chain information for 8uox.cif C4 #72.72
---
Chain | Description
C4 | No description available
Chain information for 8uox.cif C5 #72.73
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Chain | Description
C5 | No description available
Chain information for 8uox.cif C6 #72.74
---
Chain | Description
C6 | No description available
Chain information for 8uox.cif C7 #72.75
---
Chain | Description
C7 | No description available
Chain information for 8uox.cif C8 #72.76
---
Chain | Description
C8 | No description available
Chain information for 8uox.cif C9 #72.77
---
Chain | Description
C9 | No description available
Chain information for 8uox.cif CA #72.78
---
Chain | Description
CA | No description available
Chain information for 8uox.cif CB #72.79
---
Chain | Description
CB | No description available
Chain information for 8uox.cif CC #72.80
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Chain | Description
CC | No description available
Chain information for 8uox.cif CD #72.81
---
Chain | Description
CD | No description available
Chain information for 8uox.cif CE #72.82
---
Chain | Description
CE | No description available
Chain information for 8uox.cif CF #72.83
---
Chain | Description
CF | No description available
Chain information for 8uox.cif CG #72.84
---
Chain | Description
CG | No description available
Chain information for 8uox.cif CH #72.85
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Chain | Description
CH | No description available
Chain information for 8uox.cif CI #72.86
---
Chain | Description
CI | No description available
Chain information for 8uox.cif CJ #72.87
---
Chain | Description
CJ | No description available
Chain information for 8uox.cif CK #72.88
---
Chain | Description
CK | No description available
Chain information for 8uox.cif CL #72.89
---
Chain | Description
CL | No description available
Chain information for 8uox.cif CM #72.90
---
Chain | Description
CM | No description available
Chain information for 8uox.cif CN #72.91
---
Chain | Description
CN | No description available
Chain information for 8uox.cif CO #72.92
---
Chain | Description
CO | No description available
Chain information for 8uox.cif CP #72.93
---
Chain | Description
CP | No description available
Chain information for 8uox.cif CQ #72.94
---
Chain | Description
CQ | No description available
Chain information for 8uox.cif CR #72.95
---
Chain | Description
CR | No description available
Chain information for 8uox.cif CS #72.96
---
Chain | Description
CS | No description available
Chain information for 8uox.cif CT #72.97
---
Chain | Description
CT | No description available
Chain information for 8uox.cif CU #72.98
---
Chain | Description
CU | No description available
Chain information for 8uox.cif CV #72.99
---
Chain | Description
CV | No description available
Chain information for 8uox.cif CW #72.100
---
Chain | Description
CW | No description available
Chain information for 8uox.cif CX #72.101
---
Chain | Description
CX | No description available
Chain information for 8uox.cif CY #72.102
---
Chain | Description
CY | No description available
Chain information for 8uox.cif D1 #72.103
---
Chain | Description
D1 | No description available
Chain information for 8uox.cif D2 #72.104
---
Chain | Description
D2 | No description available
Chain information for 8uox.cif D3 #72.105
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Chain | Description
D3 | No description available
Chain information for 8uox.cif D4 #72.106
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Chain | Description
D4 | No description available
Chain information for 8uox.cif D5 #72.107
---
Chain | Description
D5 | No description available
Chain information for 8uox.cif D6 #72.108
---
Chain | Description
D6 | No description available
Chain information for 8uox.cif D7 #72.109
---
Chain | Description
D7 | No description available
Chain information for 8uox.cif D8 #72.110
---
Chain | Description
D8 | No description available
Chain information for 8uox.cif D9 #72.111
---
Chain | Description
D9 | No description available
Chain information for 8uox.cif DA #72.112
---
Chain | Description
DA | No description available
Chain information for 8uox.cif DB #72.113
---
Chain | Description
DB | No description available
Chain information for 8uox.cif DC #72.114
---
Chain | Description
DC | No description available
Chain information for 8uox.cif DD #72.115
---
Chain | Description
DD | No description available
Chain information for 8uox.cif DE #72.116
---
Chain | Description
DE | No description available
Chain information for 8uox.cif DF #72.117
---
Chain | Description
DF | No description available
Chain information for 8uox.cif DG #72.118
---
Chain | Description
DG | No description available
Chain information for 8uox.cif DH #72.119
---
Chain | Description
DH | No description available
Chain information for 8uox.cif DI #72.120
---
Chain | Description
DI | No description available
Chain information for 8uox.cif DJ #72.121
---
Chain | Description
DJ | No description available
Chain information for 8uox.cif DK #72.122
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Chain | Description
DK | No description available
Chain information for 8uox.cif DL #72.123
---
Chain | Description
DL | No description available
Chain information for 8uox.cif DM #72.124
---
Chain | Description
DM | No description available
Chain information for 8uox.cif DN #72.125
---
Chain | Description
DN | No description available
Chain information for 8uox.cif DO #72.126
---
Chain | Description
DO | No description available
Chain information for 8uox.cif DP #72.127
---
Chain | Description
DP | No description available
Chain information for 8uox.cif DQ #72.128
---
Chain | Description
DQ | No description available
Chain information for 8uox.cif DR #72.129
---
Chain | Description
DR | No description available
Chain information for 8uox.cif DS #72.130
---
Chain | Description
DS | No description available
Chain information for 8uox.cif DT #72.131
---
Chain | Description
DT | No description available
Chain information for 8uox.cif DU #72.132
---
Chain | Description
DU | No description available
Chain information for 8uox.cif DV #72.133
---
Chain | Description
DV | No description available
Chain information for 8uox.cif DW #72.134
---
Chain | Description
DW | No description available
Chain information for 8uox.cif DX #72.135
---
Chain | Description
DX | No description available
Chain information for 8uox.cif DY #72.136
---
Chain | Description
DY | No description available
Chain information for 8uox.cif E1 #72.137
---
Chain | Description
E1 | No description available
Chain information for 8uox.cif E2 #72.138
---
Chain | Description
E2 | No description available
Chain information for 8uox.cif E3 #72.139
---
Chain | Description
E3 | No description available
Chain information for 8uox.cif E4 #72.140
---
Chain | Description
E4 | No description available
Chain information for 8uox.cif E5 #72.141
---
Chain | Description
E5 | No description available
Chain information for 8uox.cif E6 #72.142
---
Chain | Description
E6 | No description available
Chain information for 8uox.cif E7 #72.143
---
Chain | Description
E7 | No description available
Chain information for 8uox.cif E8 #72.144
---
Chain | Description
E8 | No description available
Chain information for 8uox.cif E9 #72.145
---
Chain | Description
E9 | No description available
Chain information for 8uox.cif EA #72.146
---
Chain | Description
EA | No description available
Chain information for 8uox.cif EB #72.147
---
Chain | Description
EB | No description available
Chain information for 8uox.cif EC #72.148
---
Chain | Description
EC | No description available
Chain information for 8uox.cif ED #72.149
---
Chain | Description
ED | No description available
Chain information for 8uox.cif EE #72.150
---
Chain | Description
EE | No description available
Chain information for 8uox.cif EF #72.151
---
Chain | Description
EF | No description available
Chain information for 8uox.cif EG #72.152
---
Chain | Description
EG | No description available
Chain information for 8uox.cif EH #72.153
---
Chain | Description
EH | No description available
Chain information for 8uox.cif EI #72.154
---
Chain | Description
EI | No description available
Chain information for 8uox.cif EJ #72.155
---
Chain | Description
EJ | No description available
Chain information for 8uox.cif EK #72.156
---
Chain | Description
EK | No description available
Chain information for 8uox.cif EL #72.157
---
Chain | Description
EL | No description available
Chain information for 8uox.cif EM #72.158
---
Chain | Description
EM | No description available
Chain information for 8uox.cif EN #72.159
---
Chain | Description
EN | No description available
Chain information for 8uox.cif EO #72.160
---
Chain | Description
EO | No description available
Chain information for 8uox.cif EP #72.161
---
Chain | Description
EP | No description available
Chain information for 8uox.cif EQ #72.162
---
Chain | Description
EQ | No description available
Chain information for 8uox.cif ER #72.163
---
Chain | Description
ER | No description available
Chain information for 8uox.cif ES #72.164
---
Chain | Description
ES | No description available
Chain information for 8uox.cif ET #72.165
---
Chain | Description
ET | No description available
Chain information for 8uox.cif EU #72.166
---
Chain | Description
EU | No description available
Chain information for 8uox.cif EV #72.167
---
Chain | Description
EV | No description available
Chain information for 8uox.cif EW #72.168
---
Chain | Description
EW | No description available
Chain information for 8uox.cif EX #72.169
---
Chain | Description
EX | No description available
Chain information for 8uox.cif EY #72.170
---
Chain | Description
EY | No description available
Chain information for 8uox.cif F1 #72.171
---
Chain | Description
F1 | No description available
Chain information for 8uox.cif F2 #72.172
---
Chain | Description
F2 | No description available
Chain information for 8uox.cif F3 #72.173
---
Chain | Description
F3 | No description available
Chain information for 8uox.cif F4 #72.174
---
Chain | Description
F4 | No description available
Chain information for 8uox.cif F5 #72.175
---
Chain | Description
F5 | No description available
Chain information for 8uox.cif F6 #72.176
---
Chain | Description
F6 | No description available
Chain information for 8uox.cif F7 #72.177
---
Chain | Description
F7 | No description available
Chain information for 8uox.cif F8 #72.178
---
Chain | Description
F8 | No description available
Chain information for 8uox.cif F9 #72.179
---
Chain | Description
F9 | No description available
Chain information for 8uox.cif FA #72.180
---
Chain | Description
FA | No description available
Chain information for 8uox.cif FB #72.181
---
Chain | Description
FB | No description available
Chain information for 8uox.cif FC #72.182
---
Chain | Description
FC | No description available
Chain information for 8uox.cif FD #72.183
---
Chain | Description
FD | No description available
Chain information for 8uox.cif FE #72.184
---
Chain | Description
FE | No description available
Chain information for 8uox.cif FF #72.185
---
Chain | Description
FF | No description available
Chain information for 8uox.cif FG #72.186
---
Chain | Description
FG | No description available
Chain information for 8uox.cif FH #72.187
---
Chain | Description
FH | No description available
Chain information for 8uox.cif FI #72.188
---
Chain | Description
FI | No description available
Chain information for 8uox.cif FJ #72.189
---
Chain | Description
FJ | No description available
Chain information for 8uox.cif FK #72.190
---
Chain | Description
FK | No description available
Chain information for 8uox.cif FL #72.191
---
Chain | Description
FL | No description available
Chain information for 8uox.cif FM #72.192
---
Chain | Description
FM | No description available
Chain information for 8uox.cif FN #72.193
---
Chain | Description
FN | No description available
Chain information for 8uox.cif FO #72.194
---
Chain | Description
FO | No description available
Chain information for 8uox.cif FP #72.195
---
Chain | Description
FP | No description available
Chain information for 8uox.cif FQ #72.196
---
Chain | Description
FQ | No description available
Chain information for 8uox.cif FR #72.197
---
Chain | Description
FR | No description available
Chain information for 8uox.cif FS #72.198
---
Chain | Description
FS | No description available
Chain information for 8uox.cif FT #72.199
---
Chain | Description
FT | No description available
Chain information for 8uox.cif FU #72.200
---
Chain | Description
FU | No description available
Chain information for 8uox.cif FV #72.201
---
Chain | Description
FV | No description available
Chain information for 8uox.cif FW #72.202
---
Chain | Description
FW | No description available
Chain information for 8uox.cif FX #72.203
---
Chain | Description
FX | No description available
Chain information for 8uox.cif FY #72.204
---
Chain | Description
FY | No description available
> select add #72.1
393 atoms, 396 bonds, 47 residues, 1 model selected
> select subtract #72.1
Nothing selected
> select add #72.1
393 atoms, 396 bonds, 47 residues, 1 model selected
> select add #72.35
2976 atoms, 3000 bonds, 378 residues, 2 models selected
> select add #72.69
5324 atoms, 5401 bonds, 668 residues, 3 models selected
> select add #72.103
5949 atoms, 6030 bonds, 749 residues, 4 models selected
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/New-Cring/8uox-mono.pdb
> selectedOnly true
> hide #!72 models
Cell requested for row 0 is out of bounds for table with 543 rows! Resizing
table model.
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/New-Cring/8uox-mono.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/July_2024/Final-version_model/New-Cring/8uox-
mono.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
71 messages similar to the above omitted
Chain information for 8uox-mono.pdb
---
Chain | Description
170.1/A1 | No description available
170.2/B1 | No description available
170.3/C1 | No description available
170.4/D1 | No description available
> hide #!63 models
> show #!177 models
Drag select of 17 residues
> select add #170
5949 atoms, 6028 bonds, 6 pseudobonds, 749 residues, 7 models selected
> ombine #170 modelId #171 name 8uox-mono
Unknown command: ombine #170 modelId #171 name 8uox-mono
> combine #170 modelId #171 name 8uox-mono
> select subtract #170
Nothing selected
> hide #!170 models
> select add #177
81 models selected
> select subtract #177
Nothing selected
> select add #171
5949 atoms, 6028 bonds, 6 pseudobonds, 749 residues, 2 models selected
> view matrix models #171,1,0,0,-141.36,0,1,0,438.77,0,0,1,15.662
> view matrix models #171,1,0,0,-504.55,0,1,0,482.04,0,0,1,214.66
> hide #!177.2 models
> hide #!177.3 models
> hide #!177.4 models
> hide #!177.5 models
> hide #!177.6 models
> hide #!177.7 models
> hide #!177.8 models
> hide #!177.9 models
> hide #!177.10 models
> hide #!177.12 models
> hide #!177.13 models
> hide #!177.11 models
> hide #!177.14 models
> hide #!177.15 models
> hide #!177.16 models
> hide #!177.17 models
> hide #!177.18 models
> hide #!177.19 models
> hide #!177.20 models
> hide #!177.21 models
> hide #!177.22 models
> hide #!177.40 models
> hide #!177.39 models
> hide #!177.37 models
> hide #!177.36 models
> hide #!177.38 models
> hide #!177.35 models
> hide #!177.34 models
> hide #!177.33 models
> hide #!177.32 models
> hide #!177.30 models
> view matrix models #171,1,0,0,-487.29,0,1,0,482.68,0,0,1,161.03
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.56747,-0.19701,-0.79948,800.48,-0.56747,0.79712,0.20636,863.78,0.59663,0.57078,-0.56413,-8.4227
> view matrix models
> #171,-0.71982,-0.4925,-0.48919,839.97,-0.69417,0.51171,0.50625,886.3,0.00098956,0.70399,-0.71021,481.35
> show #!72 models
> select add #72.1
6342 atoms, 6424 bonds, 6 pseudobonds, 796 residues, 3 models selected
> select add #72.35
8925 atoms, 9028 bonds, 6 pseudobonds, 1127 residues, 4 models selected
> select add #72.69
11273 atoms, 11429 bonds, 6 pseudobonds, 1417 residues, 5 models selected
> select add #72.103
11898 atoms, 12058 bonds, 6 pseudobonds, 1498 residues, 6 models selected
> hide sel cartoons
[Repeated 1 time(s)]
> show sel cartoons
> hide sel cartoons
> select add #72.138
12523 atoms, 12687 bonds, 6 pseudobonds, 1579 residues, 7 models selected
> select add #72.171
13150 atoms, 13318 bonds, 6 pseudobonds, 1660 residues, 8 models selected
> hide sel cartoons
> select subtract #72.138
12525 atoms, 12689 bonds, 6 pseudobonds, 1579 residues, 7 models selected
> select add #72.137
13150 atoms, 13318 bonds, 6 pseudobonds, 1660 residues, 8 models selected
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> select add #72
250783 atoms, 253888 bonds, 6 pseudobonds, 31723 residues, 207 models selected
> show sel cartoons
[Repeated 1 time(s)]
> select subtract #72
5949 atoms, 6028 bonds, 6 pseudobonds, 749 residues, 2 models selected
> select add #72.1
6342 atoms, 6424 bonds, 6 pseudobonds, 796 residues, 3 models selected
> select add #72.35
8925 atoms, 9028 bonds, 6 pseudobonds, 1127 residues, 4 models selected
> select subtract #72.35
6342 atoms, 6424 bonds, 6 pseudobonds, 796 residues, 3 models selected
> select add #72.35
8925 atoms, 9028 bonds, 6 pseudobonds, 1127 residues, 4 models selected
> select add #72.69
11273 atoms, 11429 bonds, 6 pseudobonds, 1417 residues, 5 models selected
> select add #72.103
11898 atoms, 12058 bonds, 6 pseudobonds, 1498 residues, 6 models selected
> select add #72.137
12523 atoms, 12687 bonds, 6 pseudobonds, 1579 residues, 7 models selected
> select add #72.171
13150 atoms, 13318 bonds, 6 pseudobonds, 1660 residues, 8 models selected
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/New-Cring/8uox-mono.pdb
> selectedOnly true
> close #170-171
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/New-Cring/8uox-mono.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/July_2024/Final-version_model/New-Cring/8uox-
mono.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
128 messages similar to the above omitted
Chain information for 8uox-mono.pdb
---
Chain | Description
170.1/A1 170.7/A1 | No description available
170.2/B1 170.7/B1 | No description available
170.3/C1 170.7/C1 | No description available
170.4/D1 170.7/D1 170.5/E1 | No description available
170.6/F1 | No description available
> select add #72
244834 atoms, 247860 bonds, 30974 residues, 205 models selected
> select subtract #72
Nothing selected
> hide #!72 models
Cell requested for row 71 is out of bounds for table with 591 rows! Resizing
table model.
> select add #170
13150 atoms, 13322 bonds, 3 pseudobonds, 1660 residues, 9 models selected
> select subtract #170.7
7201 atoms, 7290 bonds, 3 pseudobonds, 911 residues, 8 models selected
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/New-Cring/8uox-mono.pdb
> selectedOnly true
> close #170
> open /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/New-Cring/8uox-mono.pdb
Summary of feedback from opening /Volumes/Backup-95/Chimera-2023/PflB-PflA-
project/Start-from_June2024/July_2024/Final-version_model/New-Cring/8uox-
mono.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77
Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
3
Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
1 12
Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
1 3
Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
1 3
109 messages similar to the above omitted
Chain information for 8uox-mono.pdb
---
Chain | Description
170.1/A1 | No description available
170.2/B1 | No description available
170.3/C1 | No description available
170.4/D1 170.5/E1 | No description available
170.6/F1 | No description available
> select add #170
7201 atoms, 7291 bonds, 911 residues, 7 models selected
> ui mousemode right "translate selected models"
> view matrix models #170,1,0,0,-566.74,0,1,0,329.1,0,0,1,83.063
> ui mousemode right "rotate selected models"
> view matrix models
> #170,0.064907,-0.85421,-0.51586,131.77,-0.98738,0.019861,-0.15712,1011.8,0.14446,0.51955,-0.84214,274.53
> ui mousemode right "translate selected models"
> view matrix models
> #170,0.064907,-0.85421,-0.51586,174.78,-0.98738,0.019861,-0.15712,1126.3,0.14446,0.51955,-0.84214,417.04
> show #!177.2 models
> hide #!177.2 models
> show #!177.30 models
> color #177.30 #9292927a models
> color #177.31 #9292926f models
> view matrix models
> #170,0.064907,-0.85421,-0.51586,232.38,-0.98738,0.019861,-0.15712,1209.7,0.14446,0.51955,-0.84214,430.3
> view matrix models
> #170,0.064907,-0.85421,-0.51586,226.11,-0.98738,0.019861,-0.15712,1207.5,0.14446,0.51955,-0.84214,360.35
> view matrix models
> #170,0.064907,-0.85421,-0.51586,247.67,-0.98738,0.019861,-0.15712,1216.5,0.14446,0.51955,-0.84214,360.48
> ui mousemode right "rotate selected models"
> view matrix models
> #170,0.009939,-0.98019,-0.19783,231.19,-0.99642,0.0069042,-0.084269,1211.9,0.083965,0.19796,-0.97661,387.05
> view matrix models
> #170,-0.031682,-0.99812,-0.052478,240.37,-0.99947,0.032048,-0.0061513,1206.1,0.0078215,0.052255,-0.9986,431.72
> ui mousemode right "translate selected models"
> view matrix models
> #170,-0.031682,-0.99812,-0.052478,230.06,-0.99947,0.032048,-0.0061513,1204,0.0078215,0.052255,-0.9986,418.51
> view matrix models
> #170,-0.031682,-0.99812,-0.052478,242.68,-0.99947,0.032048,-0.0061513,1210.1,0.0078215,0.052255,-0.9986,422.29
> view matrix models
> #170,-0.031682,-0.99812,-0.052478,240.1,-0.99947,0.032048,-0.0061513,1209.3,0.0078215,0.052255,-0.9986,422.08
> view matrix models
> #170,-0.031682,-0.99812,-0.052478,218.49,-0.99947,0.032048,-0.0061513,1202.7,0.0078215,0.052255,-0.9986,425.15
> ui mousemode right "rotate selected models"
> view matrix models
> #170,-0.28077,-0.9564,-0.080467,417.36,-0.95696,0.28537,-0.052825,1204.3,0.073485,0.062172,-0.99536,375.48
> ui mousemode right "translate selected models"
> view matrix models
> #170,-0.28077,-0.9564,-0.080467,430.01,-0.95696,0.28537,-0.052825,1206.5,0.073485,0.062172,-0.99536,376.56
> hide #!177.31 models
> show #!177.31 models
> ui tool show "Fit in Map"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> combine #170 modelId #171 name 8uox-mono
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> fitmap #171 inMap #177.31
Fit molecule 8uox-mono (#171) to map HP_C-ring_monomer.mrc copy gaussian
(#177.31) using 7201 atoms
average map value = 0.03417, steps = 140
shifted from previous position = 11.7
rotated from previous position = 42.2 degrees
atoms outside contour = 4344, contour level = 0.04
Position of 8uox-mono (#171) relative to HP_C-ring_monomer.mrc copy gaussian
(#177.31) coordinates:
Matrix rotation and translation
0.98074352 0.09581047 0.17018373 -730.04040904
0.07211242 -0.98747151 0.14035609 -445.57889690
0.18149917 -0.12538096 -0.97536541 -105.19759458
Axis -0.99515248 -0.04237491 -0.08874628
Axis point 0.00000000 -208.53409672 -6.11173102
Rotation angle (degrees) 172.32719883
Shift along axis 754.71878694
> hide #!170 models
> select subtract #170
Nothing selected
> select add #171
7201 atoms, 7291 bonds, 911 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.40053,-0.87157,0.28274,464.18,-0.91609,0.3873,-0.10384,1179.6,-0.019002,-0.3006,-0.95356,389.97
> ui mousemode right "translate selected models"
> view matrix models
> #171,-0.40053,-0.87157,0.28274,477.4,-0.91609,0.3873,-0.10384,1197.1,-0.019002,-0.3006,-0.95356,387.5
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.41958,-0.90219,-0.099997,543.09,-0.8949,0.42958,-0.12086,1188,0.152,0.038777,-0.98762,299.27
> ui mousemode right "translate selected models"
> view matrix models
> #171,-0.41958,-0.90219,-0.099997,549.55,-0.8949,0.42958,-0.12086,1190.4,0.152,0.038777,-0.98762,300.13
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.42524,-0.88464,-0.19129,568.8,-0.86618,0.45906,-0.19746,1182.6,0.26249,0.081728,-0.96147,216.86
> ui mousemode right "translate selected models"
> view matrix models
> #171,-0.42524,-0.88464,-0.19129,567.6,-0.86618,0.45906,-0.19746,1187.2,0.26249,0.081728,-0.96147,219.89
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.42865,-0.86127,-0.27291,584.4,-0.81672,0.49855,-0.29054,1167.1,0.38629,0.098351,-0.91712,120.98
> ui mousemode right "translate selected models"
> view matrix models
> #171,-0.42865,-0.86127,-0.27291,583.87,-0.81672,0.49855,-0.29054,1172,0.38629,0.098351,-0.91712,120.3
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.45466,-0.84527,-0.28071,606.58,-0.80251,0.5255,-0.28255,1162.9,0.38634,0.096809,-0.91726,120.12
> ui mousemode right "translate selected models"
> view matrix models
> #171,-0.45466,-0.84527,-0.28071,607.08,-0.80251,0.5255,-0.28255,1162.4,0.38634,0.096809,-0.91726,120.13
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.46066,-0.84142,-0.28249,612.33,-0.79908,0.5317,-0.28065,1160.2,0.38634,0.09645,-0.9173,120.09
> view matrix models
> #171,-0.4564,-0.84131,-0.28964,610.12,-0.80674,0.52859,-0.26413,1163.3,0.37531,0.11312,-0.91997,130.71
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.45435,-0.84105,-0.29359,609.15,-0.80958,0.52735,-0.25784,1164.5,0.37168,0.12053,-0.9205,134.38
> view matrix models
> #171,-0.46193,-0.8362,-0.29561,615.75,-0.80568,0.53498,-0.25431,1161.8,0.3708,0.12069,-0.92084,135.12
> view matrix models
> #171,-0.49405,-0.84254,-0.21456,628,-0.80413,0.53664,-0.2557,1161,0.33058,0.046207,-0.94264,160.7
> ui mousemode right "translate selected models"
> view matrix models
> #171,-0.49405,-0.84254,-0.21456,633.72,-0.80413,0.53664,-0.2557,1161.9,0.33058,0.046207,-0.94264,161.81
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.54047,-0.83735,-0.082092,650.82,-0.8161,0.54547,-0.19091,1162.8,0.20464,-0.036184,-0.97817,253.87
> ui mousemode right "translate selected models"
> view matrix models
> #171,-0.54047,-0.83735,-0.082092,649.61,-0.8161,0.54547,-0.19091,1162.2,0.20464,-0.036184,-0.97817,253.82
> ui mousemode right "rotate selected models"
> view matrix models
> #171,-0.54903,-0.83435,-0.049304,651.8,-0.81767,0.5484,-0.17515,1161.5,0.17318,-0.05585,-0.98331,276.38
> view matrix models
> #171,-0.56662,-0.82234,-0.051932,666.91,-0.80641,0.56638,-0.17003,1154.2,0.16924,-0.054466,-0.98407,279.65
> view matrix models
> #171,-0.56631,-0.81913,-0.091227,672.63,-0.79372,0.57184,-0.20737,1150.4,0.22203,-0.045029,-0.974,238.98
> view matrix models
> #171,-0.5619,-0.81891,-0.11685,672.94,-0.79176,0.57334,-0.2107,1149.5,0.23954,-0.025874,-0.97054,227.25
> view matrix models
> #171,-0.5606,-0.81866,-0.12462,673.08,-0.79091,0.57392,-0.21232,1149.2,0.24534,-0.020463,-0.96922,223.23
> view matrix models
> #171,-0.57121,-0.81096,-0.12676,682.33,-0.78402,0.58478,-0.20819,1144.5,0.24296,-0.019541,-0.96984,225.23
> view matrix models
> #171,-0.58371,-0.80161,-0.12922,693.24,-0.77564,0.59756,-0.20324,1138.9,0.24014,-0.018402,-0.97056,227.61
> select clear
> view orient
> show #!113 models
> sym #171 C39 copies true center #113
Made 39 copies for 8uox-mono symmetry C39
> color #172 #929292ff models
> show #!177.2 models
> show #!177.3 models
> show #!177.4 models
> show #!177.5 models
> show #!177.6 models
> show #!177.7 models
> show #!177.8 models
> show #!177.9 models
> show #!177.10 models
> show #!177.11 models
> show #!177.12 models
> show #!177.13 models
> show #!177.14 models
> show #!177.15 models
> show #!177.16 models
> show #!177.17 models
> show #!177.18 models
> show #!177.19 models
> show #!177.20 models
> show #!177.21 models
> show #!177.22 models
> show #!177.32 models
> show #!177.33 models
> show #!177.35 models
> show #!177.34 models
> show #!177.36 models
> show #!177.37 models
> show #!177.38 models
> show #!177.39 models
> hide #!177 models
Cell requested for row 171 is out of bounds for table with 382 rows! Resizing
table model.
> select add #172
280839 atoms, 284349 bonds, 35529 residues, 40 models selected
Alignment identifier is 1
Alignment identifier is 2
Alignment identifier is 3
Alignment identifier is 4
Alignment identifier is 5
> select #172.1/A1:560 #172.2/A1:560 #172.3/A1:560 #172.4/A1:560 #172.5/A1:560
> #172.6/A1:560 #172.7/A1:560 #172.8/A1:560 #172.9/A1:560 #172.10/A1:560
> #172.11/A1:560 #172.12/A1:560 #172.13/A1:560 #172.14/A1:560 #172.15/A1:560
> #172.16/A1:560 #172.17/A1:560 #172.18/A1:560 #172.19/A1:560 #172.20/A1:560
> #172.21/A1:560 #172.22/A1:560 #172.23/A1:560 #172.24/A1:560 #172.25/A1:560
> #172.26/A1:560 #172.27/A1:560 #172.28/A1:560 #172.29/A1:560 #172.30/A1:560
> #172.31/A1:560 #172.32/A1:560 #172.33/A1:560 #172.34/A1:560 #172.35/A1:560
> #172.36/A1:560 #172.37/A1:560 #172.38/A1:560 #172.39/A1:560
390 atoms, 351 bonds, 39 residues, 39 models selected
> select #172.1/A1 #172.2/A1 #172.3/A1 #172.4/A1 #172.5/A1 #172.6/A1 #172.7/A1
> #172.8/A1 #172.9/A1 #172.10/A1 #172.11/A1 #172.12/A1 #172.13/A1 #172.14/A1
> #172.15/A1 #172.16/A1 #172.17/A1 #172.18/A1 #172.19/A1 #172.20/A1 #172.21/A1
> #172.22/A1 #172.23/A1 #172.24/A1 #172.25/A1 #172.26/A1 #172.27/A1 #172.28/A1
> #172.29/A1 #172.30/A1 #172.31/A1 #172.32/A1 #172.33/A1 #172.34/A1 #172.35/A1
> #172.36/A1 #172.37/A1 #172.38/A1 #172.39/A1
15327 atoms, 15444 bonds, 1833 residues, 39 models selected
1 [ID: 1] region 39 chains [1-47] RMSD: 285.742
> hide sel surfaces
> hide sel cartoons
> select add #172
280839 atoms, 284349 bonds, 35529 residues, 40 models selected
> hide sel cartoons
> show sel surfaces
> select #172.1/A1:560 #172.2/A1:560 #172.3/A1:560 #172.4/A1:560 #172.5/A1:560
> #172.6/A1:560 #172.7/A1:560 #172.8/A1:560 #172.9/A1:560 #172.10/A1:560
> #172.11/A1:560 #172.12/A1:560 #172.13/A1:560 #172.14/A1:560 #172.15/A1:560
> #172.16/A1:560 #172.17/A1:560 #172.18/A1:560 #172.19/A1:560 #172.20/A1:560
> #172.21/A1:560 #172.22/A1:560 #172.23/A1:560 #172.24/A1:560 #172.25/A1:560
> #172.26/A1:560 #172.27/A1:560 #172.28/A1:560 #172.29/A1:560 #172.30/A1:560
> #172.31/A1:560 #172.32/A1:560 #172.33/A1:560 #172.34/A1:560 #172.35/A1:560
> #172.36/A1:560 #172.37/A1:560 #172.38/A1:560 #172.39/A1:560
390 atoms, 351 bonds, 39 residues, 39 models selected
> select #172.1/A1 #172.2/A1 #172.3/A1 #172.4/A1 #172.5/A1 #172.6/A1 #172.7/A1
> #172.8/A1 #172.9/A1 #172.10/A1 #172.11/A1 #172.12/A1 #172.13/A1 #172.14/A1
> #172.15/A1 #172.16/A1 #172.17/A1 #172.18/A1 #172.19/A1 #172.20/A1 #172.21/A1
> #172.22/A1 #172.23/A1 #172.24/A1 #172.25/A1 #172.26/A1 #172.27/A1 #172.28/A1
> #172.29/A1 #172.30/A1 #172.31/A1 #172.32/A1 #172.33/A1 #172.34/A1 #172.35/A1
> #172.36/A1 #172.37/A1 #172.38/A1 #172.39/A1
15327 atoms, 15444 bonds, 1833 residues, 39 models selected
1 [ID: 1] region 39 chains [1-47] RMSD: 285.742
> hide sel surfaces
> color #172 #727272ff models
> hide #!113 models
> lighting soft
> view SideP1
Expected an objects specifier or a view name or a keyword
> view Side
> save /Users/shoichitachiyama/Desktop/Fig5a_09042024.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-
> view4-09042024.cxs
> view Side
> save /Users/shoichitachiyama/Desktop/Fig5a_09042024.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-
> view4-09042024.cxs includeMaps true
> lighting simple
> show #!31 models
> show #!32 models
> show #!33 models
> show #!34 models
> show #!35 models
> show #!36 models
> hide #!52 models
> show #!52 models
> hide #!52 models
> hide #!53 models
> hide #!65 models
> hide #!58 models
> hide #!59 models
> hide #!71 models
> hide #!73-79 models
> hide #!97 models
> select add #172
280839 atoms, 284349 bonds, 35529 residues, 79 models selected
> select subtract #172
234 models selected
> hide #!312 models
> hide #!316 models
> hide #!513 models
> hide #!514 models
> hide #!16 models
> show #!167.7 models
> show #!167.8 models
> show #!167.9 models
> show #!167.10 models
> show #!167.11 models
> show #!167.12 models
> show #!168.7 models
> show #!168.8 models
> show #!168.9 models
> show #!168.10 models
> show #!168.11 models
> show #!168.12 models
> show #!169.7 models
> show #!169.8 models
> show #!169.9 models
> show #!169.10 models
> show #!169.11 models
> show #!169.12 models
Cell requested for row 180 is out of bounds for table with 360 rows! Resizing
table model.
> show #!183.8 models
> show #!183.9 models
> show #!183.10 models
> show #!183.11 models
> show #!183.12 models
> show #!183.13 models
> show #!185.13 models
> show #!185.14 models
> show #!185.17 models
> show #!185.18 models
> turn x 45
> turn x -45
> turn x -40
> turn x 40
[Repeated 1 time(s)]
> show #!184.8 models
> show #!184.9 models
> show #!184.11 models
> show #!184.12 models
> show #!184.13 models
> show #!184.14 models
> show #!184.27 models
> show #!184.28 models
> show #!184.29 models
> show #!184.30 models
> show #!184.31 models
> show #!184.32 models
> show #!185.47 models
> show #!185.48 models
> show #!185.51 models
> show #!185.52 models
> color #20 #92929273 models
> color #21 #92929273 models
> color #22 #92929273 models
> color #24 #92929273 models
> color #23 #92929273 models
> color #25 #92929273 models
> color #20-37 #92929273 models
> lighting simple
> lighting soft
> save /Users/shoichitachiyama/Desktop/Fig5b_09042024.png supersample 2
> transparentBackground true
> save /Users/shoichitachiyama/Desktop/Fig5b-turn40_09042024.png supersample 2
> transparentBackground true
> turn x 50
> hide #!313 models
> show #!52 models
> ui tool show "Side View"
> show #!486.1 models
> show #!486.2 models
> show #!486.3 models
> show #!486.16 models
> show #!486.17 models
> show #!486.18 models
> hide #!484 models
Cell requested for row 387 is out of bounds for table with 422 rows! Resizing
table model.
> show #!488.1 models
> show #!488.2 models
> show #!488.3 models
> show #!488.15 models
> show #!488.16 models
> show #!488.17 models
> show #!488.18 models
> show #!501.1 models
> show #!501.4 models
> show #!501.2 models
> show #!501.3 models
> show #!501.16 models
> show #!501.17 models
> show #!501.18 models
> show #!502.1 models
> show #!502.3 models
> show #!502.2 models
> show #!502.15 models
> show #!502.18 models
> show #!502.16 models
> show #!502.17 models
> save /Users/shoichitachiyama/Desktop/Fig5c-top_09042024.png supersample 2
> transparentBackground true
> save /Users/shoichitachiyama/Desktop/Fig5c-top-zoom_09042024.png supersample
> 2 transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver_side-
> view4top-09042024.cxs includeMaps true
——— End of log from Wed Sep 4 21:55:24 2024 ———
opened ChimeraX session
> close #1-15
> lighting simple
> close #17-19
> close #38-51
> close #54-57
> close #101-112
> close #116-120
> close #124-141
> close #146-164
> close #195-212
> close #281-298
> close #356-373,377-391,415-418,424-477
> hide #!1-502 models
> show #!142 models
> open /Users/shoichi/Desktop/For-Recheck/Hp-C1-4.296A-msk.mrc
Opened Hp-C1-4.296A-msk.mrc as #1, grid size 220,220,220, pixel 4.3, shown at
level 0.151, step 1, values float32
> select add #1
3 models selected
> select subtract #1
Nothing selected
> turn x 90
[Repeated 2 time(s)]
> select add #1
3 models selected
> ui tool show "Fit in Map"
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
[Repeated 1 time(s)]
> fitmap #1 inMap #142
Fit map Hp-C1-4.296A-msk.mrc in map Hpwt-L0.08-rev.mrc using 106324 points
correlation = 0.1182, correlation about mean = 0.03153, overlap = 110.2
steps = 72, shift = 5.28, angle = 3.06 degrees
Position of Hp-C1-4.296A-msk.mrc (#1) relative to Hpwt-L0.08-rev.mrc (#142)
coordinates:
Matrix rotation and translation
0.99987242 -0.01433205 0.00705211 -24.34264789
0.01429177 0.99988145 0.00572933 -31.43795351
-0.00713338 -0.00562781 0.99995872 -18.23271796
Axis -0.33497159 0.41839179 0.84424069
Axis point 1584.58704129 -2189.19020052 0.00000000
Rotation angle (degrees) 0.97134759
Shift along axis -20.39208840
> volume #1 level 0.1505
> volume #1 level 0.01909
> view matrix models
> #1,0.99859,-0.052967,0.0018581,21.33,0.052955,0.99858,0.005984,25.948,-0.0021724,-0.0058772,0.99998,70.215
> fitmap #1 inMap #142
Fit map Hp-C1-4.296A-msk.mrc in map Hpwt-L0.08-rev.mrc using 2643031 points
correlation = 0.8131, correlation about mean = 0.6111, overlap = 1.128e+04
steps = 144, shift = 69.4, angle = 2.47 degrees
Position of Hp-C1-4.296A-msk.mrc (#1) relative to Hpwt-L0.08-rev.mrc (#142)
coordinates:
Matrix rotation and translation
0.99961553 0.02772696 -0.00006258 30.99151304
-0.02772698 0.99961551 -0.00021059 57.20740052
0.00005671 0.00021225 0.99999998 42.55503898
Axis 0.00762485 -0.00215107 -0.99996862
Axis point 2075.20968769 -1100.63488163 0.00000000
Rotation angle (degrees) 1.58889186
Shift along axis -42.44045498
> fitmap #1 inMap #142
Fit map Hp-C1-4.296A-msk.mrc in map Hpwt-L0.08-rev.mrc using 2643031 points
correlation = 0.813, correlation about mean = 0.6111, overlap = 1.128e+04
steps = 28, shift = 0.0475, angle = 0.00383 degrees
Position of Hp-C1-4.296A-msk.mrc (#1) relative to Hpwt-L0.08-rev.mrc (#142)
coordinates:
Matrix rotation and translation
0.99961709 0.02767091 -0.00006206 31.01585673
-0.02767093 0.99961706 -0.00024704 57.19701807
0.00005520 0.00024867 0.99999997 42.58605776
Axis 0.00895690 -0.00211887 -0.99995764
Axis point 2079.09893366 -1105.84563444 0.00000000
Rotation angle (degrees) 1.58569654
Shift along axis -42.42764104
> fitmap #1 inMap #142
Fit map Hp-C1-4.296A-msk.mrc in map Hpwt-L0.08-rev.mrc using 2643031 points
correlation = 0.8131, correlation about mean = 0.6111, overlap = 1.128e+04
steps = 40, shift = 0.0475, angle = 0.00278 degrees
Position of Hp-C1-4.296A-msk.mrc (#1) relative to Hpwt-L0.08-rev.mrc (#142)
coordinates:
Matrix rotation and translation
0.99961617 0.02770406 -0.00007977 31.01280471
-0.02770407 0.99961615 -0.00021635 57.19948348
0.00007375 0.00021848 0.99999997 42.54415641
Axis 0.00784739 -0.00277070 -0.99996537
Axis point 2075.69205637 -1102.70014594 0.00000000
Rotation angle (degrees) 1.58758405
Shift along axis -42.45779597
> fitmap #1 inMap #142
Fit map Hp-C1-4.296A-msk.mrc in map Hpwt-L0.08-rev.mrc using 2643031 points
correlation = 0.813, correlation about mean = 0.6112, overlap = 1.128e+04
steps = 40, shift = 0.0463, angle = 0.00315 degrees
Position of Hp-C1-4.296A-msk.mrc (#1) relative to Hpwt-L0.08-rev.mrc (#142)
coordinates:
Matrix rotation and translation
0.99961749 0.02765638 -0.00005836 31.02132377
-0.02765639 0.99961747 -0.00019955 57.16727518
0.00005282 0.00020109 0.99999998 42.60847354
Axis 0.00724291 -0.00201008 -0.99997175
Axis point 2079.23646392 -1104.04153726 0.00000000
Rotation angle (degrees) 1.58484117
Shift along axis -42.49749591
> select subtract #1
Nothing selected
> hide #!1 models
> show #!183 models
> show #!184 models
> show #!185 models
> select add #185
34112 atoms, 34320 bonds, 4238 residues, 32 models selected
> select add #184
143984 atoms, 146334 bonds, 17720 residues, 99 models selected
> select add #183
266906 atoms, 271830 bonds, 32894 residues, 118 models selected
> view orient
> turn x 90
[Repeated 2 time(s)]
> color #142 #b2ffb23c models
> color #142 #b2ffb23d models
> color #142 #7693733d models
> color #142 #657e623d models
> color #142 #495b473d models
> color #142 #242c233d models
> ui mousemode right "rotate selected models"
> view matrix models
> #183,0.99984,-5.973e-18,0.017933,-8.8343,5.973e-18,1,5.3562e-20,-1.3056e-17,-0.017933,5.3562e-20,0.99984,9.6836,#184,0.99984,-5.973e-18,0.017933,-8.8343,5.973e-18,1,5.3562e-20,-1.3056e-17,-0.017933,5.3562e-20,0.99984,9.6836,#185,0.99984,-5.973e-18,0.017933,-8.8343,5.973e-18,1,5.3562e-20,-1.3056e-17,-0.017933,5.3562e-20,0.99984,9.6836
> ui mousemode right "translate selected models"
> view matrix models
> #183,0.99984,-5.973e-18,0.017933,-9.0939,5.973e-18,1,5.3562e-20,-1.1631e-15,-0.017933,5.3562e-20,0.99984,13.137,#184,0.99984,-5.973e-18,0.017933,-9.0939,5.973e-18,1,5.3562e-20,-1.1631e-15,-0.017933,5.3562e-20,0.99984,13.137,#185,0.99984,-5.973e-18,0.017933,-9.0939,5.973e-18,1,5.3562e-20,-1.1631e-15,-0.017933,5.3562e-20,0.99984,13.137
> turn x 90
> view matrix models
> #183,0.99984,-5.973e-18,0.017933,-10.864,5.973e-18,1,5.3562e-20,0.0012434,-0.017933,5.3562e-20,0.99984,13.137,#184,0.99984,-5.973e-18,0.017933,-10.864,5.973e-18,1,5.3562e-20,0.0012434,-0.017933,5.3562e-20,0.99984,13.137,#185,0.99984,-5.973e-18,0.017933,-10.864,5.973e-18,1,5.3562e-20,0.0012434,-0.017933,5.3562e-20,0.99984,13.137
> view matrix models
> #183,0.99984,-5.973e-18,0.017933,-11.158,5.973e-18,1,5.3562e-20,0.0012434,-0.017933,5.3562e-20,0.99984,13.137,#184,0.99984,-5.973e-18,0.017933,-11.158,5.973e-18,1,5.3562e-20,0.0012434,-0.017933,5.3562e-20,0.99984,13.137,#185,0.99984,-5.973e-18,0.017933,-11.158,5.973e-18,1,5.3562e-20,0.0012434,-0.017933,5.3562e-20,0.99984,13.137
> show #!1 models
> color #1 #2f2f25ff models
> color #1 #2f2f2520 models
> hide #!142 models
> color #1 #2f2f2521 models
> volume #1 level 0.0006925
> show #!123 models
> hide #!123 models
> show #!142 models
> hide #!1 models
> show #!1 models
> select subtract #183
143984 atoms, 146334 bonds, 17720 residues, 144 models selected
> select add #185
143984 atoms, 146334 bonds, 17720 residues, 140 models selected
> select subtract #185
109872 atoms, 112014 bonds, 13482 residues, 99 models selected
> select add #184
109872 atoms, 112014 bonds, 13482 residues, 86 models selected
> select subtract #184
36 models selected
> hide #!183 models
> hide #!184 models
> hide #!185 models
> show #!20 models
> show #!20-37 models
> select add #20
2 models selected
> select add #21
4 models selected
> select add #22
6 models selected
> select add #23
8 models selected
> select add #24
10 models selected
> select add #25
12 models selected
> select add #26
14 models selected
> select add #27
16 models selected
> select add #28
18 models selected
> select add #29
20 models selected
> select add #30
22 models selected
> select add #31
24 models selected
> select add #32
26 models selected
> select add #33
28 models selected
> select add #34
30 models selected
> select add #35
32 models selected
> select add #36
34 models selected
> select add #37
36 models selected
> turn x 90
[Repeated 2 time(s)]
> hide #!1 models
> hide #!142 models
> show #!185 models
> show #!184 models
> show #!183 models
> turn x 90
[Repeated 2 time(s)]
> show #!142 models
> turn x 90
> hide #!142 models
> show #!142 models
> hide #!183 models
> hide #!184 models
> hide #!185 models
> show #!183 models
> show #!184 models
> show #!185 models
> select subtract #20
34 models selected
> select subtract #21
32 models selected
> select subtract #22
30 models selected
> select add #23
31 models selected
> select add #24
32 models selected
> select subtract #25
30 models selected
> select subtract #26
28 models selected
> select subtract #27
26 models selected
> select subtract #29
24 models selected
> select subtract #23
21 models selected
> select subtract #24
18 models selected
> select subtract #28
16 models selected
> select subtract #30
14 models selected
> select subtract #31
12 models selected
> select add #32
13 models selected
> select add #33
14 models selected
> select subtract #34
12 models selected
> select subtract #35
10 models selected
> select subtract #36
8 models selected
> select subtract #37
6 models selected
> select subtract #32
3 models selected
> select subtract #33
Nothing selected
> select add #32
3 models selected
> select subtract #32
Nothing selected
> select add #183
122922 atoms, 125496 bonds, 15174 residues, 19 models selected
> select add #184
232794 atoms, 237510 bonds, 28656 residues, 76 models selected
> select add #185
266906 atoms, 271830 bonds, 32894 residues, 143 models selected
> select add #184
266906 atoms, 271830 bonds, 32894 residues, 143 models selected
> select add #185
266906 atoms, 271830 bonds, 32894 residues, 169 models selected
> select subtract #184
157034 atoms, 159816 bonds, 19412 residues, 130 models selected
> select add #184
266906 atoms, 271830 bonds, 32894 residues, 133 models selected
> hide #!142 models
> show #!1 models
> select subtract #185
232794 atoms, 237510 bonds, 28656 residues, 138 models selected
> hide #!185 models
> hide #!184 models
> hide #!183 models
> select subtract #183
109872 atoms, 112014 bonds, 13482 residues, 91 models selected
> select subtract #184
54 models selected
> select add #183
122922 atoms, 125496 bonds, 15174 residues, 19 models selected
> select subtract #183
18 models selected
> show #!185 models
> hide #!185 models
> show #!184 models
> hide #!184 models
> show #!183 models
> hide #!183 models
> color #20 #929292ff models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color #20-37 #929292ff models
> select add #20
2 models selected
> select add #21
4 models selected
> select add #22
6 models selected
> select add #23
9 models selected
> select add #24
12 models selected
> select add #25
14 models selected
> select add #26
16 models selected
> select add #27
18 models selected
> select add #28
20 models selected
> select add #29
22 models selected
> select add #30
24 models selected
> select add #31
26 models selected
> select add #32
29 models selected
> select add #33
32 models selected
> select add #34
34 models selected
> select add #35
36 models selected
> select add #36
38 models selected
> select add #37
40 models selected
> view matrix models
> #20,0.22373,0.97465,0.0024031,587.84,-0.97445,0.22363,0.021033,277.68,0.019962,-0.0070473,0.99978,545.14,#21,0.54351,0.83939,-0.0049355,673.35,-0.83916,0.54349,0.020586,310.82,0.019962,-0.0070473,0.99978,545.14,#22,0.79775,0.60288,-0.011679,742.37,-0.60266,0.7978,0.017657,371.2,0.019962,-0.0070473,0.99978,545.14,#23,0.95576,0.29366,-0.017013,786.57,-0.29347,0.95588,0.012598,451.55,0.019962,-0.0070473,0.99978,545.14,#24,0.99849,-0.050984,-0.020296,800.63,0.051115,0.99867,0.0060189,542.17,0.019962,-0.0070473,0.99978,545.14,#25,0.92079,-0.38948,-0.021131,782.85,0.38954,0.92101,-0.0012857,632.13,0.019962,-0.0070473,0.99978,545.14,#26,0.73203,-0.68099,-0.019417,735.37,0.68098,0.73226,-0.0084353,710.59,0.019962,-0.0070473,0.99978,545.14,#27,0.45498,-0.89037,-0.015361,663.91,0.89028,0.45518,-0.014567,768.07,0.019962,-0.0070473,0.99978,545.14,#28,0.12305,-0.99236,-0.0094518,577.11,0.9922,0.12321,-0.018942,797.65,0.019962,-0.0070473,0.99978,545.14,#29,-0.22373,-0.97465,-0.0024031,485.43,0.97445,-0.22363,-0.021033,795.76,0.019962,-0.0070473,0.99978,545.14,#30,-0.54351,-0.83939,0.0049355,399.92,0.83916,-0.54349,-0.020586,762.62,0.019962,-0.0070473,0.99978,545.14,#31,-0.79775,-0.60288,0.011679,330.9,0.60266,-0.7978,-0.017657,702.24,0.019962,-0.0070473,0.99978,545.14,#32,-0.95576,-0.29366,0.017013,286.69,0.29347,-0.95588,-0.012598,621.89,0.019962,-0.0070473,0.99978,545.14,#33,-0.99849,0.050984,0.020296,272.64,-0.051115,-0.99867,-0.0060189,531.27,0.019962,-0.0070473,0.99978,545.14,#34,-0.92079,0.38948,0.021131,290.42,-0.38954,-0.92101,0.0012857,441.31,0.019962,-0.0070473,0.99978,545.14,#35,-0.73203,0.68099,0.019417,337.9,-0.68098,-0.73226,0.0084353,362.85,0.019962,-0.0070473,0.99978,545.14,#36,-0.45498,0.89037,0.015361,409.36,-0.89028,-0.45518,0.014567,305.37,0.019962,-0.0070473,0.99978,545.14,#37,-0.12305,0.99236,0.0094518,496.16,-0.9922,-0.12321,0.018942,275.79,0.019962,-0.0070473,0.99978,545.14
> undo
> turn x 90
[Repeated 3 time(s)]
> select add #25
41 models selected
> select add #26
42 models selected
> select add #20
43 models selected
> select add #21
44 models selected
> select add #22
45 models selected
> select subtract #20
42 models selected
> select subtract #21
39 models selected
> select subtract #22
36 models selected
> select subtract #23
33 models selected
> select subtract #24
30 models selected
> select subtract #26
27 models selected
> select subtract #25
24 models selected
> select add #27
25 models selected
> select add #28
26 models selected
> select add #29
27 models selected
> select add #30
28 models selected
> select add #31
29 models selected
> select subtract #32
26 models selected
> select subtract #33
23 models selected
> select add #34
24 models selected
> select add #35
25 models selected
> select add #36
26 models selected
> select add #37
27 models selected
> select subtract #27
24 models selected
> select subtract #28
21 models selected
> select subtract #29
18 models selected
> select subtract #30
15 models selected
> select subtract #31
12 models selected
> select subtract #37
9 models selected
> select subtract #36
6 models selected
> select subtract #35
3 models selected
> select subtract #34
Nothing selected
> color #20 #9292924d models
> hide #!1 models
> color #20-37 #9292924d models
> color #20 #7d7d7d4d models
> color #20 #7c7c7c4d models
> color #20 #7c7c7c40 models
> color #20-37 #7c7c7c40 models
> show #!16 models
> show #!52 models
> show #!53 models
> select add #52
114468 atoms, 116060 bonds, 18 pseudobonds, 15371 residues, 2 models selected
> select add #53
213710 atoms, 216576 bonds, 70 pseudobonds, 28761 residues, 81 models selected
> hide sel atoms
> select subtract #52
99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 131 models selected
> select subtract #53
129 models selected
> hide #!52 models
> hide #!53 models
> show #!52 models
> hide #!16 models
> show #!183 models
> show #!184 models
> show #!185 models
> show #!486 models
> show #!488 models
> show #!501 models
> show #!502 models
> show #!177 models
> hide #!177 models
> close #177
> show #!172 models
> show #!167 models
> show #!166 models
> hide #!166 models
> show #!169 models
> show #!165 models
> hide #!165 models
> show #!168 models
> show #!259 models
> show #!182 models
> view orient
> lighting soft
> save /Users/shoichi/Desktop/HP_Top_10032024.png supersample 2
> transparentBackground true
> show #!313 models
> hide #!502.6 models
> show #!502.6 models
> hide #!488.6 models
> hide #!488.7 models
> lighting simple
> show #!488.6 models
> show #!488.7 models
> hide #!488.14 models
> hide #!488.15 models
> hide #!488.16 models
> hide #!488.17 models
> hide #!488.18 models
> hide #!488.1 models
> hide #!488.2 models
> hide #!488.3 models
> hide #!488.4 models
> show #!488.4 models
> hide #!486.1 models
> hide #!486.2 models
> hide #!486.3 models
> hide #!486.4 models
> hide #!486.18 models
> hide #!486.17 models
> hide #!486.16 models
> hide #!486.15 models
> view SideP1
Expected an objects specifier or a view name or a keyword
> view Side P1
Expected an integer >= 1 or a keyword
> view Side
> hide #!502.15 models
> hide #!502.16 models
> hide #!502.17 models
> hide #!502.18 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!502.3 models
> hide #!502.4 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> hide #!501.4 models
> show #!501.4 models
> hide #!501.18 models
> hide #!501.17 models
> hide #!501.16 models
> hide #!501.15 models
> turn x 90
[Repeated 2 time(s)]
> hide #!501.4 models
> turn x 90
> turn y 90
> hide #!502.14 models
> show #!502.4 models
> view Side
> turn x 45
> view Side
> turn x 40
> hide #!52 models
> lighting soft
[Repeated 1 time(s)]
> save /Users/shoichi/Desktop/HP_Tilt_10032024.png supersample 2
> transparentBackground true
[Repeated 1 time(s)]
> color #20 #7c7c7c1a models
The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.
> color #20-37 #7c7c7c1a models
> save /Users/shoichi/Desktop/HP_Tilt_10032024.png supersample 2
> transparentBackground true
> color #20 #7c7c7c26 models
> color #20-37 #7c7c7c26 models
> save /Users/shoichi/Desktop/HP_Tilt_10032024.png supersample 2
> transparentBackground true
> hide #!313 models
> show #!52 models
> show #!501.15 models
> show #!502.1 models
> show #!502.2 models
> show #!502.3 models
> show #!502.14 models
> show #!502.15 models
> lighting simple
> show #!501.16 models
> show #!501.17 models
> show #!501.18 models
> show #!502.16 models
> show #!502.17 models
> show #!488.1 models
> show #!488.2 models
> show #!488.3 models
> show #!488.14 models
> show #!488.15 models
> show #!488.16 models
> show #!488.17 models
> show #!488.18 models
> show #!486.15 models
> show #!486.16 models
> show #!486.17 models
> show #!486.18 models
> show #!486.1 models
> show #!486.2 models
> show #!486.3 models
> show #!486.4 models
> show #!501.1 models
> show #!501.2 models
> show #!501.3 models
> show #!501.4 models
> show #!502.18 models
> view orient
> lighting soft
> save /Users/shoichi/Desktop/HP_Top_10032024.png supersample 2
> transparentBackground true
> view Side
> hide #!486.1 models
> hide #!486.2 models
> hide #!486.3 models
> show #!486.3 models
> hide #!486.3 models
> hide #!486.18 models
> hide #!486.17 models
> hide #!486.16 models
> lighting simple
> view Side
[Repeated 1 time(s)]
> hide #!486.4 models
> hide #!486.15 models
> hide #!488 models
> show #!488 models
> hide #!488.1 models
> hide #!488.2 models
> hide #!488.3 models
> hide #!488.17 models
> hide #!488.18 models
> hide #!488.15 models
> hide #!488.14 models
> hide #!488.16 models
> hide #!501.1 models
> hide #!501.2 models
> hide #!501.3 models
> hide #!501.4 models
> hide #!501.15 models
> hide #!501.16 models
> hide #!501.17 models
> hide #!501.18 models
> hide #!502.1 models
> hide #!502.2 models
> hide #!502.3 models
> hide #!502.14 models
> hide #!502.15 models
> hide #!502.16 models
> hide #!502.17 models
> hide #!502.18 models
> hide #!167.6 models
> hide #!167.5 models
> show #!167.5 models
> hide #!167.7 models
> hide #!167.8 models
> hide #!167.9 models
> hide #!167.10 models
> hide #!167.11 models
> hide #!167.12 models
> hide #!167.13 models
> show #!167.13 models
> hide #!168.6 models
> hide #!168.7 models
> hide #!168.8 models
> hide #!168.9 models
> hide #!168.10 models
> hide #!168.11 models
> hide #!168.12 models
> hide #!169.6 models
> hide #!169.7 models
> hide #!169.8 models
> hide #!169.9 models
> hide #!169.10 models
> show #!169.10 models
> hide #!169.11 models
> hide #!169.10 models
> hide #!169.12 models
> hide #!183.6 models
> show #!183.6 models
> hide #!183.10 models
> hide #!183.9 models
> hide #!183.8 models
> hide #!183.11 models
> hide #!183.12 models
> hide #!183.13 models
> hide #!184.29 models
> hide #!184.28 models
> hide #!184.27 models
> hide #!184.26 models
> hide #!184.10 models
> hide #!184.11 models
> hide #!184.12 models
> hide #!184.13 models
> hide #!184.14 models
> show #!184.14 models
> hide #!184.30 models
> hide #!184.9 models
> hide #!184.8 models
> hide #!185.44 models
> hide #!185.42 models
> show #!185.42 models
> hide #!185.1 models
> hide #!185.47 models
> hide #!185.48 models
> hide #!185.51 models
> hide #!185.52 models
> hide #!185.42 models
> show #!185.42 models
> hide #!185.13 models
> hide #!185.14 models
> view Side
> hide #!30 models
> hide #!31 models
> hide #!32 models
> hide #!33 models
> hide #!34 models
> hide #!35 models
> hide #!36 models
> hide #!29 models
> show #!16 models
> show #!53 models
> show #!58 models
> show #!59 models
> show #!65 models
> show #!67 models
> show #!71 models
> show #!74 models
> show #!73 models
> show #!75 models
> show #!76 models
> show #!77 models
> show #!78 models
> show #!79 models
> show #!80 models
> show #!123 models
> show #!122 models
> hide #!123 models
> show #!121 models
> hide #!121 models
> color #122 #b7916aff models
> show #!313 models
> show #!316 models
> show #!312 models
> show #!484 models
> show #!513 models
> show #!514 models
> show #!97 models
> lighting soft
> save /Users/shoichi/Desktop/HP_Side_10032024.png supersample 2
> transparentBackground true
> save /Volumes/Backup-95/Chimera-2023/PflB-PflA-project/Start-
> from_June2024/July_2024/Final-version_model/Final-ver5_-10032024.cxs
> includeMaps true
——— End of log from Fri Oct 4 17:19:37 2024 ———
opened ChimeraX session
> lighting simple
> show #!29 models
> hide #!29 models
> show #!36 models
> show #!35 models
> show #!34 models
> show #!33 models
> show #!32 models
> show #!31 models
> show #!30 models
> show #!29 models
> hide #!29 models
> hide #!30 models
> hide #!31 models
> hide #!32 models
> hide #!34 models
> hide #!35 models
> hide #!52 models
> hide #!37 models
> open "/Volumes/Lab Backup/Jun Liu Lab 2025/Poster/2025_MB/HP_Cage_model.pdb"
Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab
2025/Poster/2025_MB/HP_Cage_model.pdb
---
warnings | Start residue of secondary structure not found: HELIX 1 1 PHE A 6 THR A 83 1 78
Start residue of secondary structure not found: HELIX 2 2 ASP A 93 CYS A 107 1
15
Start residue of secondary structure not found: HELIX 3 3 LEU A 136 TYR A 149
1 14
Start residue of secondary structure not found: SHEET 1 1 1 ALA A 110 LEU A
116 0
Start residue of secondary structure not found: SHEET 2 2 1 LYS A 124 ALA A
133 0
131 messages similar to the above omitted
Chain information for HP_Cage_model.pdb
---
Chain | Description
2.9/A 2.12/E | No description available
2.10/B 2.13/F | No description available
2.11/C 2.14/G | No description available
2.1/D 2.4/G | No description available
2.2/E 2.5/H | No description available
2.3/F 2.6/I | No description available
2.15/I 2.17/K | No description available
2.16/J 2.18/L | No description available
2.7/O 2.8/Q | No description available
Drag select of 214 residues
> select clear
[Repeated 1 time(s)]
> hide #2.6 models
> show #2.6 models
> select add #2.6
828 atoms, 835 bonds, 108 residues, 1 model selected
> hide #2.5 models
> show #2.5 models
> hide #2.5 models
> show #2.5 models
> select add #2.5
1401 atoms, 1421 bonds, 173 residues, 2 models selected
> hide #2.4 models
> show #2.4 models
> select add #2.4
3974 atoms, 4053 bonds, 486 residues, 3 models selected
> select add #2.3
4802 atoms, 4888 bonds, 594 residues, 4 models selected
> select add #2.2
5375 atoms, 5474 bonds, 659 residues, 5 models selected
> select add #2.1
7948 atoms, 8106 bonds, 972 residues, 6 models selected
> select subtract #2.1
5375 atoms, 5474 bonds, 659 residues, 5 models selected
> hide #2.1 models
> select subtract #2.2
4802 atoms, 4888 bonds, 594 residues, 4 models selected
> hide #2.2 models
> select subtract #2.3
3974 atoms, 4053 bonds, 486 residues, 3 models selected
> hide #2.3 models
> select add #2.7
4736 atoms, 4835 bonds, 572 residues, 4 models selected
> hide #2.7 models
> select add #2.8
5498 atoms, 5617 bonds, 658 residues, 5 models selected
> select add #2.9
6985 atoms, 7134 bonds, 837 residues, 6 models selected
> select add #2.10
8268 atoms, 8445 bonds, 994 residues, 7 models selected
> select add #2.11
10847 atoms, 11073 bonds, 1304 residues, 8 models selected
> show #2.7 models
> hide #2.7 models
> select subtract #2.7
10085 atoms, 10291 bonds, 1218 residues, 7 models selected
> select add #2.12
11572 atoms, 11808 bonds, 1397 residues, 8 models selected
> select add #2.13
12855 atoms, 13119 bonds, 1554 residues, 9 models selected
> select add #2.14
15434 atoms, 15747 bonds, 1864 residues, 10 models selected
> select add #2.15
16430 atoms, 16756 bonds, 1988 residues, 11 models selected
> select add #2.16
16661 atoms, 16990 bonds, 2018 residues, 12 models selected
> select add #2.17
17657 atoms, 17999 bonds, 2142 residues, 13 models selected
> close #2.7
> close #2.1-3
> combine #2
Remapping chain ID 'G' in HP_Cage_model.pdb #2.14 to 'J'
Remapping chain ID 'I' in HP_Cage_model.pdb #2.15 to 'K'
Remapping chain ID 'J' in HP_Cage_model.pdb #2.16 to 'L'
Remapping chain ID 'K' in HP_Cage_model.pdb #2.17 to 'M'
Remapping chain ID 'L' in HP_Cage_model.pdb #2.18 to 'N'
> hide #!2 models
> select add #2
17888 atoms, 18233 bonds, 2172 residues, 15 models selected
> hide #!488.4 models
> show #!488.4 models
> hide #!488.4 models
> show #!488.4 models
> combine #488.4
> hide #4 models
> show #4 models
> hide #!488.4 models
> hide #4 models
> show #4 models
> close #4
> show #487 models
> matchmaker #3 to #487
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PilNO_alphafold2_multimer_v3_model_1_seed_000.pdb, chain B (#487)
with combination, chain A (#3), sequence alignment score = 923.6
RMSD between 36 pruned atom pairs is 1.311 angstroms; (across all 179 pairs:
5.544)
> close #485,487#486,488
> show #!82 models
> show #!86 models
> select subtract #2
Nothing selected
> select add #3
17888 atoms, 18233 bonds, 2172 residues, 1 model selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.98568,-0.098666,-0.13672,436.2,0.080939,-0.98825,0.12965,548.74,-0.1479,0.11673,0.98209,314.83
> view matrix models
> #3,-0.90936,-0.40897,-0.076248,491.93,0.39381,-0.90531,0.15916,454.44,-0.13412,0.1147,0.9843,312.03
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.90936,-0.40897,-0.076248,489.21,0.39381,-0.90531,0.15916,458.14,-0.13412,0.1147,0.9843,313.98
> show #!1 models
> hide #!1 models
> hide #!16 models
> hide #!16-514 models
> show #!1 models
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.97839,0.19722,0.062122,319.14,-0.20226,-0.97525,-0.089344,647.38,0.042964,-0.099977,0.99406,331.35
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.97839,0.19722,0.062122,305.93,-0.20226,-0.97525,-0.089344,682.4,0.042964,-0.099977,0.99406,330.22
> view matrix models
> #3,-0.97839,0.19722,0.062122,353.51,-0.20226,-0.97525,-0.089344,689.79,0.042964,-0.099977,0.99406,342.11
> view matrix models
> #3,-0.97839,0.19722,0.062122,344.61,-0.20226,-0.97525,-0.089344,708.99,0.042964,-0.099977,0.99406,337.95
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.97986,0.19701,0.032595,350.04,-0.19791,-0.97985,-0.027082,698.6,0.026603,-0.032988,0.9991,322.79
> ui tool show "Fit in Map"
> fitmap #3 inMap #16
Fit molecule combination (#3) to map 0838-bottom.mrc (#16) using 17888 atoms
average map value = 0, steps = 24
shifted from previous position = 0
rotated from previous position = 0 degrees
atoms outside contour = 17888, contour level = 0.01441
Position of combination (#3) relative to 0838-bottom.mrc (#16) coordinates:
Matrix rotation and translation
-0.97985882 0.19701334 0.03259504 325.57183750
-0.19791159 -0.97984569 -0.02708208 676.88455927
0.02660258 -0.03298755 0.99910166 93.52842138
Axis -0.01495002 0.01517023 -0.99977315
Axis point 195.91582755 322.97827102 0.00000000
Rotation angle (degrees) 168.60877152
Shift along axis -88.10601186
> fitmap #3 inMap #16
Fit molecule combination (#3) to map 0838-bottom.mrc (#16) using 17888 atoms
average map value = 0, steps = 24
shifted from previous position = 0
rotated from previous position = 0 degrees
atoms outside contour = 17888, contour level = 0.01441
Position of combination (#3) relative to 0838-bottom.mrc (#16) coordinates:
Matrix rotation and translation
-0.97985882 0.19701334 0.03259504 325.57183750
-0.19791159 -0.97984569 -0.02708208 676.88455927
0.02660258 -0.03298755 0.99910166 93.52842138
Axis -0.01495002 0.01517023 -0.99977315
Axis point 195.91582755 322.97827102 0.00000000
Rotation angle (degrees) 168.60877152
Shift along axis -88.10601186
> view matrix models
> #3,-0.98045,0.19594,0.01808,352.94,-0.19539,-0.98031,0.02867,688.62,0.023342,0.024577,0.99943,308.13
> select subtract #3
Nothing selected
> hide #!1 models
> save /Users/shoichi/Desktop/All-model_HP_for_Topcage.cxs includeMaps true
> show #!53 models
> hide #!53 models
> show #!52 models
> view orient
> sym #3 C18 copies true center #52
Made 18 copies for combination symmetry C18
> close #4
> split #3
Split combination (#3) into 14 models
Chain information for combination A #3.1
---
Chain | Description
A | No description available
Chain information for combination B #3.2
---
Chain | Description
B | No description available
Chain information for combination C #3.3
---
Chain | Description
C | No description available
Chain information for combination E #3.4
---
Chain | Description
E | No description available
Chain information for combination F #3.5
---
Chain | Description
F | No description available
Chain information for combination G #3.6
---
Chain | Description
G | No description available
Chain information for combination H #3.7
---
Chain | Description
H | No description available
Chain information for combination I #3.8
---
Chain | Description
I | No description available
Chain information for combination J #3.9
---
Chain | Description
J | No description available
Chain information for combination K #3.10
---
Chain | Description
K | No description available
Chain information for combination L #3.11
---
Chain | Description
L | No description available
Chain information for combination M #3.12
---
Chain | Description
M | No description available
Chain information for combination N #3.13
---
Chain | Description
N | No description available
Chain information for combination Q #3.14
---
Chain | Description
Q | No description available
> show #3.1 models
> show #3.2 models
> show #3.3 models
> show #3.4 models
> show #3.14 models
> show #3.13 models
> show #3.12 models
> show #3.11 models
> show #3.10 models
> show #3.9 models
> show #3.8 models
> show #3.7 models
> show #3.6 models
> show #3.5 models
> hide #!52 models
> select add #3.14
762 atoms, 782 bonds, 86 residues, 1 model selected
Drag select of 6 residues
> select add #3.7
573 atoms, 586 bonds, 65 residues, 1 model selected
> select add #3.8
1401 atoms, 1421 bonds, 173 residues, 2 models selected
> select subtract #3.8
573 atoms, 586 bonds, 65 residues, 1 model selected
> select add #3.6
3146 atoms, 3218 bonds, 378 residues, 2 models selected
> select subtract #3.7
2573 atoms, 2632 bonds, 313 residues, 1 model selected
> select subtract #3.6
Nothing selected
Drag select of 37 residues
> select add #3.12
996 atoms, 1009 bonds, 124 residues, 1 model selected
> select add #3.13
1227 atoms, 1243 bonds, 154 residues, 2 models selected
> select subtract #3.13
996 atoms, 1009 bonds, 124 residues, 1 model selected
> select add #3.11
1227 atoms, 1243 bonds, 154 residues, 2 models selected
> select subtract #3.11
996 atoms, 1009 bonds, 124 residues, 1 model selected
Drag select of 68 residues
> select add #3.10
1044 atoms, 1009 bonds, 129 residues, 2 models selected
> select add #3.12
2040 atoms, 2018 bonds, 253 residues, 3 models selected
> select add #3.4
3479 atoms, 3535 bonds, 427 residues, 3 models selected
> select subtract #3.4
1992 atoms, 2018 bonds, 248 residues, 2 models selected
> W16: color sel #1e46ffff models
Unknown command: W16: color sel #1e46ffff models
> color sel #1e46ffff models
> select clear
Drag select of 135 residues
> select add #3.3
3025 atoms, 2628 bonds, 365 residues, 2 models selected
> select add #3.9
5158 atoms, 5256 bonds, 620 residues, 2 models selected
> color sel #d4f9ffff models
> select clear
Drag select of 8 residues
Drag select of 12 residues
> select add #3.11
313 atoms, 234 bonds, 42 residues, 2 models selected
> select add #3.13
462 atoms, 468 bonds, 60 residues, 2 models selected
> color sel #7b80ffff models
> color sel #adffc1ff models
Drag select of 14 residues
Drag select of 6 residues
> select add #3.14
822 atoms, 782 bonds, 92 residues, 2 models selected
> select add #3.7
1335 atoms, 1368 bonds, 151 residues, 2 models selected
> color sel #adffc1ff models
> select clear
Drag select of 5 residues
> select add #3.2
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.4
2770 atoms, 2828 bonds, 336 residues, 2 models selected
> select subtract #3.4
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.4
2770 atoms, 2828 bonds, 336 residues, 2 models selected
> select subtract #3.4
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.6
3856 atoms, 3943 bonds, 470 residues, 2 models selected
> select subtract #3.6
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.8
2111 atoms, 2146 bonds, 265 residues, 2 models selected
> select subtract #3.8
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.1
2770 atoms, 2828 bonds, 336 residues, 2 models selected
> select subtract #3.1
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.3
3862 atoms, 3939 bonds, 467 residues, 2 models selected
> select subtract #3.3
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.4
2770 atoms, 2828 bonds, 336 residues, 2 models selected
> select subtract #3.4
1283 atoms, 1311 bonds, 157 residues, 1 model selected
> select add #3.5
2566 atoms, 2622 bonds, 314 residues, 2 models selected
> color sel #6bf7f8ff models
> color sel #0fb4fcff models
> select clear
> select add #3.3
2579 atoms, 2628 bonds, 310 residues, 1 model selected
> select add #3.1
4066 atoms, 4145 bonds, 489 residues, 2 models selected
> select subtract #3.3
1487 atoms, 1517 bonds, 179 residues, 1 model selected
> select add #3.6
4060 atoms, 4149 bonds, 492 residues, 2 models selected
> select subtract #3.6
1487 atoms, 1517 bonds, 179 residues, 1 model selected
> select add #3.4
2974 atoms, 3034 bonds, 358 residues, 2 models selected
> color sel #6bf7f8ff models
> select clear
[Repeated 1 time(s)]
> select add #3.3
2579 atoms, 2628 bonds, 310 residues, 1 model selected
> select subtract #3.3
Nothing selected
> select add #3.8
828 atoms, 835 bonds, 108 residues, 1 model selected
> color #3.8 #ecaae9ff
> color #3.8 #e49eecff
> color #3.8 #a237ecff
> lighting soft
[Repeated 1 time(s)]
> graphics silhouettes false
> graphics silhouettes true
> color #3.8 #851decff
> color #3.8 #820fecff
> color #3.8 #780fecff
> select add #3.3
3407 atoms, 3463 bonds, 418 residues, 2 models selected
> select subtract #3.8
2579 atoms, 2628 bonds, 310 residues, 1 model selected
> select add #3.6
5152 atoms, 5260 bonds, 623 residues, 2 models selected
> select subtract #3.3
2573 atoms, 2632 bonds, 313 residues, 1 model selected
> color #3.6 #ecdfbcff
> color #3.6 #ecd4a8ff
> color #3.6 #ecc9a5ff
> color #3.6 #eccca2ff
> color sel #c49d5fff models
> select clear
> combine #3
> hide #!3 models
> show #!53 models
> hide #!53 models
> show #!52 models
> view orient
> sym #4 C18 copies true center #52
Made 18 copies for combination symmetry C18
> save /Users/shoichi/Desktop/All-model_HP_for_Topcage.cxs includeMaps true
——— End of log from Mon Sep 8 12:14:54 2025 ———
opened ChimeraX session
> show #!16 models
> show #!53 models
> lighting simple
> show #!65 models
> show #!67 models
> show #!97 models
> show #!167 models
> show #!168 models
> show #!169 models
> show #!172 models
> show #!182-185 models
> show #!259 models
> show #!312 models
> show #!313 models
> show #!316 models
> show #!484 models
> close #499-500#501-502
> show #!513 models
> show #!514 models
> view orient
> save /Users/shoichi/Desktop/All-model_HP_for_Topcage.cxs includeMaps true
> turn x 90
[Repeated 2 time(s)]
> turn y 90
> ui tool show "Volume Viewer"
> volume #97 region 0,0,0,239,239,239
> volume #513 region 0,0,0,239,239,239
> volume #514 region 0,0,0,239,239,239
> volume #484 region 0,0,0,239,239,239
> volume #316 region 0,0,0,239,239,239
> volume #313 region 0,0,0,239,239,239
> volume #312 region 0,0,0,239,239,239
> show #!58 models
> show #!59 models
> hide #!59 models
> hide #!58 models
> show #!58 models
> show #!59 models
> show #!71 models
> show #!73 models
> show #!74 models
> show #!75 models
> show #!75-84 models
> show #!86 models
> show #!122 models
> hide #!122 models
> show #!122 models
> save /Users/shoichi/Desktop/All-model_HP_for_Topcage.cxs includeMaps true
> close #60,64#61-63
> close #66
> close #68-70
> close #72
> show #!85 models
> close #87-96
> close #98-99#100,113-115,121
> close #123,142-145,165-166
> close #171#170
> close #176#173-175,178-179,181
> close #186-187
> close #479,481-483
> close #495-498,507-512
> hide #!85 models
> hide #!52 models
> hide #!1-514 models
> show #4 models
> show #!58 models
> show #!59 models
> show #!71 models
> show #!74 models
> show #!75 models
> show #!76 models
> show #!77 models
> show #!78 models
> hide #!71 models
> hide #!74 models
> hide #!75 models
> hide #!76 models
> hide #!78 models
> hide #!77 models
> show #!122 models
> show #!86 models
> show #!84 models
> hide #!122 models
> hide #!86 models
> show #!86 models
> hide #!84 models
> ui tool show "Segment Map"
Segmenting Top-cage.mrc copy, density threshold 0.143336
Showing 5 region surfaces
24 watershed regions, grouped to 5 regions
Showing Top-cage copy.seg - 5 regions, 5 surfaces
> hide #!59 models
> hide #!58 models
> select add #6
6 models selected
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,-120.34,0,1,0,36.834,0,0,1,78.752
> view matrix models #6,1,0,0,91.614,0,1,0,243.28,0,0,1,465.23
> ui mousemode right "rotate selected models"
> view matrix models
> #6,0.95062,0.095435,0.29531,81.316,-0.30194,0.50433,0.809,267.2,-0.071726,-0.85822,0.50825,529.81
> view matrix models
> #6,-0.7973,-0.27248,-0.53857,268.99,0.59101,-0.17133,-0.78826,275.13,0.12251,-0.94678,0.29765,522.8
> view matrix models
> #6,-0.84016,-0.34997,-0.41432,273.45,0.45421,-0.87149,-0.18492,306.39,-0.29636,-0.34355,0.89115,509.22
> select #6.2
1 model selected
> select add #6.1
2 models selected
Opened Top-cage_imasked as #7, grid size 240,240,240, pixel 2.1, shown at step
1, values float32
> hide #!6 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!86 models
> hide #!7 models
> show #!7 models
> save /Users/shoichi/Desktop/Top-middle.mrc models #7
> open /Users/shoichi/Desktop/Top-middle.mrc
Opened Top-middle.mrc as #8, grid size 240,240,240, pixel 2.1, shown at level
0.000178, step 1, values float32
> surface dust #7 size 21
> surface dust #8 size 21
> close #6
> select add #8
2 models selected
> show #!73 models
> hide #!73 models
> hide #4 models
> show #!5 models
> show #!58 models
> show #!59 models
> hide #!7 models
> hide #!58 models
> show #!71 models
> hide #!71 models
> show #!58 models
> hide #!58 models
> show #!71 models
> hide #!71 models
> show #!73 models
> ui mousemode right "translate selected models"
> view matrix models #8,1,0,0,520.65,0,1,0,320.81,0,0,1,475.13
> view matrix models #8,1,0,0,612.82,0,1,0,209.49,0,0,1,487.47
> ui mousemode right "rotate selected models"
> view matrix models
> #8,0.52094,0.55507,-0.64847,636.41,-0.36097,0.83168,0.4219,239.24,0.77351,0.014295,0.63362,430.8
> view matrix models
> #8,0.25824,0.89945,-0.35257,640.94,-0.63916,0.43273,0.63579,273.28,0.72442,0.061167,0.68664,432.31
> ui mousemode right "translate selected models"
> view matrix models
> #8,0.25824,0.89945,-0.35257,689.04,-0.63916,0.43273,0.63579,265.33,0.72442,0.061167,0.68664,488.19
> view matrix models
> #8,0.25824,0.89945,-0.35257,698.98,-0.63916,0.43273,0.63579,296.04,0.72442,0.061167,0.68664,489.61
> view matrix models
> #8,0.25824,0.89945,-0.35257,697.01,-0.63916,0.43273,0.63579,282.58,0.72442,0.061167,0.68664,476.53
> ui tool show "Fit in Map"
> fitmap #8 inMap #59
Fit map Top-middle.mrc in map Top-cage.mrc copy using 42001 points
correlation = 0.9994, correlation about mean = 0.9994, overlap = 5.943e+05
steps = 796, shift = 67.3, angle = 45.3 degrees
Position of Top-middle.mrc (#8) relative to Top-cage.mrc copy (#59)
coordinates:
Matrix rotation and translation
0.99998884 -0.00343469 -0.00324545 0.25009164
0.00342375 0.99998846 -0.00337128 -0.10368619
0.00325699 0.00336013 0.99998906 -0.34149610
Axis 0.58013923 -0.56040526 0.59108749
Axis point 30.30942820 72.48848021 0.00000000
Rotation angle (degrees) 0.33240608
Shift along axis 0.00134018
> fitmap #8 inMap #59
Fit map Top-middle.mrc in map Top-cage.mrc copy using 42001 points
correlation = 0.9992, correlation about mean = 0.9993, overlap = 5.942e+05
steps = 76, shift = 0.0659, angle = 0.0495 degrees
Position of Top-middle.mrc (#8) relative to Top-cage.mrc copy (#59)
coordinates:
Matrix rotation and translation
0.99998600 -0.00357231 -0.00390377 0.25095619
0.00355703 0.99998602 -0.00391329 -0.10232638
0.00391770 0.00389935 0.99998473 -0.41491489
Axis 0.59391535 -0.59458617 0.54197034
Axis point 104.09319997 0.00000000 66.19171392
Rotation angle (degrees) 0.37685080
Shift along axis -0.01498298
> select clear
> select add #5
321984 atoms, 328194 bonds, 39096 residues, 19 models selected
> show sel surfaces
> select clear
> show #!85 models
> select add #8
2 models selected
> view matrix models
> #8,0.52314,0.85132,-0.039735,437.32,-0.85156,0.52402,0.015766,243.15,0.034244,0.025589,0.99909,462.2
> close #7-8
> ui tool show "Segment Map"
Segmenting Cage_1unit.mrc copy, density threshold 0.044638
Showing 296 region surfaces
1367 watershed regions, grouped to 296 regions
Showing Cage_1unit copy.seg - 296 regions, 296 surfaces
> select add #6
297 models selected
> view matrix models #6,1,0,0,599.48,0,1,0,410.88,0,0,1,138.1
> ui mousemode right "rotate selected models"
> view matrix models
> #6,-0.20217,0.97835,0.044155,584.5,-0.93341,-0.17885,-0.31106,389.01,-0.29643,-0.1041,0.94936,132.58
> view matrix models
> #6,-0.18964,0.97834,0.082966,584.74,-0.93863,-0.15584,-0.30772,388.82,-0.28812,-0.13623,0.94785,132.87
> ui mousemode right "translate selected models"
> view matrix models
> #6,-0.18964,0.97834,0.082966,660.67,-0.93863,-0.15584,-0.30772,457.34,-0.28812,-0.13623,0.94785,635.56
> ui mousemode right "rotate selected models"
> view matrix models
> #6,-0.065345,0.98936,-0.12998,663.05,-0.9714,-0.033271,0.2351,459.33,0.22828,0.14163,0.96324,650.64
> ui mousemode right "translate selected models"
> view matrix models
> #6,-0.065345,0.98936,-0.12998,503.04,-0.9714,-0.033271,0.2351,474.09,0.22828,0.14163,0.96324,651.72
> show #!183 models
> hide #!6 models
> select subtract #6
Nothing selected
> open /Users/shoichi/Desktop/Top-middle.mrc
Opened Top-middle.mrc as #7, grid size 240,240,240, pixel 2.1, shown at level
0.000178, step 1, values float32
> select add #7
2 models selected
> surface dust #7 size 21
> view matrix models #7,1,0,0,243.57,0,1,0,415.82,0,0,1,122.75
> view matrix models #7,1,0,0,219.29,0,1,0,336.68,0,0,1,622.26
> view matrix models #7,1,0,0,288.54,0,1,0,296.38,0,0,1,591
> ui mousemode right "rotate selected models"
> view matrix models
> #7,0.041694,0.92425,0.37952,324.78,-0.99661,0.065421,-0.049832,408.76,-0.070886,-0.37615,0.92384,611.19
> ui mousemode right "translate selected models"
> view matrix models
> #7,0.041694,0.92425,0.37952,478.43,-0.99661,0.065421,-0.049832,269.57,-0.070886,-0.37615,0.92384,552.45
> hide #!59 models
> hide #!73 models
> fitmap #7 inMap #85
Fit map Top-middle.mrc in map Cage_1unit.mrc copy using 42001 points
correlation = 0.9963, correlation about mean = 0.9965, overlap = 5.941e+05
steps = 432, shift = 24.6, angle = 27.5 degrees
Position of Top-middle.mrc (#7) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99997772 0.00341867 -0.00573373 -0.11652290
-0.00351088 0.99986342 -0.01615023 0.52932007
0.00567774 0.01617000 0.99985315 -1.25326889
Axis 0.92425127 -0.32633009 -0.19816222
Axis point 0.00000000 78.18471709 31.46535518
Rotation angle (degrees) 1.00184177
Shift along axis -0.03207896
> fitmap #7 inMap #85
Fit map Top-middle.mrc in map Cage_1unit.mrc copy using 42001 points
correlation = 0.9961, correlation about mean = 0.9962, overlap = 5.937e+05
steps = 164, shift = 0.314, angle = 0.234 degrees
Position of Top-middle.mrc (#7) relative to Cage_1unit.mrc copy (#85)
coordinates:
Matrix rotation and translation
0.99996029 0.00738603 -0.00498719 -0.31489944
-0.00746846 0.99983237 -0.01671693 0.80537795
0.00486288 0.01675352 0.99984783 -1.21031389
Axis 0.88265209 -0.25975683 -0.39172908
Axis point 0.00000000 72.97625042 47.24306371
Rotation angle (degrees) 1.08640233
Shift along axis -0.01303393
> hide #!85 models
> show #!52 models
> view orient
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #8, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #9, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #10, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #11, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #12, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #13, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #14, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #15, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #17, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #18, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #19, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #38, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #39, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #40, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #41, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #42, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> surface dust #7 size 21
[Repeated 1 time(s)]
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #43, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> surface dust #7-25 size 58.49
> surface dust #7-43 size 58.49
> color #38 #5e5e5e4c models
> hide #!43 models
> show #!43 models
> surface dust #7-43 size 58.49
> hide #!8 models
> show #!8 models
> turn z 20 models #7 center #52
> volume copy #7
Opened Top-middle.mrc copy as #44, grid size 240,240,240, pixel 2.1, shown at
step 1, values float32
> volume #7 show
> surface dust #7-44 size 58.49
> color #39 #5e5e5e4c models
> color #38-44 #5e5e5e4c models
> color #7-15 #5e5e5e4c models
> color #17-19 #5e5e5e4c models
> show #!183.8 models
> show #!183.9 models
> show #!183.10 models
> show #!183.11 models
> show #!183.12 models
> show #!183.13 models
> show #!167 models
> show #!167.6 models
> show #!167.7 models
> show #!167.8 models
> show #!167.9 models
> show #!167.10 models
> show #!167.11 models
> show #!167.12 models
> show #!168 models
> show #!168.6 models
> show #!168.7 models
> show #!168.8 models
> show #!168.9 models
> show #!168.10 models
> show #!168.11 models
> show #!168.12 models
> color #168 #bfb986ff models
> show #!169 models
> color #169 #bfa315ff models
> color #169 #bfaf00ff models
> color #169 #d5c300ff models
> select clear
> show #!169.6 models
> show #!169.7 models
> show #!169.8 models
> show #!169.9 models
> show #!169.10 models
> show #!169.11 models
> show #!169.12 models
> show #!184 models
> show #!184.8 models
> show #!184.9 models
> show #!184.10 models
> show #!184.11 models
> show #!184.12 models
> show #!184.13 models
> show #!184.26 models
> show #!184.27 models
> show #!184.28 models
> show #!184.29 models
> show #!184.30 models
> show #!185 models
> show #!185.1 models
> show #!185.13 models
> show #!185.14 models
> show #!185.44 models
> show #!185.47 models
> show #!185.48 models
> show #!185.51 models
> show #!185.52 models
> show #!182 models
> save /Users/shoichi/Desktop/All-model_HP_for_Topcage_Poster.cxs includeMaps
> true
> color #184 #ff0002ff models
> view orient
> show #!172 models
> show #!259 models
> ui tool show "Side View"
> lighting soft
> save /Users/shoichi/Desktop/Poster-model-top.png supersample 2
> transparentBackground true
> lighting soft
> lighting simple
> turn x 90
[Repeated 10 time(s)]
> show #!312 models
> show #!312-514 models
> show #!53 models
> show #!65 models
> show #!67 models
> turn y -10
[Repeated 9 time(s)]
> color #313 #9ebfabff models
> color #316 #9ebfabff models
> lighting soft
> color #313 #acd1bfff models
> color #313 #9ebfabff models
> color #313 #929292ff models
> color #313 #424242ff models
> color #313 #9ebfabff models
> color #313 #9dbfabff models
> color #313 #8fae9bff models
> color #313 #8fad9bff models
> color #313 #6a8174ff models
> color #313 #70887aff models
> color #316 #70887aff models
> turn z -0.1
[Repeated 1 time(s)]
> color #38 #5e5e5e00 models
> color #38 #5e5e5e99 models
> color #38-44 #5e5e5e99 models
> color #7-15 #5e5e5e99 models
> color #17-19 #5e5e5e99 models
> save /Users/shoichi/Desktop/Poster-model-side.png supersample 2
> transparentBackground true
> turn x 45
> lighting simple
> turn x -45
> turn x -90
> select add #312
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #312,0.99997,0.0080447,2.7675e-05,-4.32,-0.0080447,0.99997,4.7651e-06,4.3326,-2.7635e-05,-4.9876e-06,1,0.017513
> view matrix models
> #312,0.99934,0.036194,0.00012482,-19.163,-0.036194,0.99934,1.9686e-05,19.768,-0.00012402,-2.4191e-05,1,0.079569
> select clear
> turn x 90
> lighting soft
> save /Users/shoichi/Desktop/All-model_HP_for_Topcage_Poster.cxs includeMaps
> true
> save /Users/shoichi/Desktop/Poster-model-side.png supersample 2
> transparentBackground true
> hide #!316 models
> hide #!312 models
> hide #!514 models
> hide #!513 models
> hide #!65 models
> hide #!52 models
> hide #!53 models
> turn x 40
> hide #!313 models
> hide #!484 models
> save /Users/shoichi/Desktop/Poster-model-tilt40a.png supersample 2
> transparentBackground true
> show #!316 models
> hide #!316 models
> show #!313 models
> hide #!313 models
> show #!484 models
> show #!313 models
> color #484 #70887aff models
> save /Users/shoichi/Desktop/Poster-model-tilt40b.png supersample 2
> transparentBackground true
> save /Users/shoichi/Desktop/All-model_HP_for_Topcage_Poster.cxs includeMaps
> true
——— End of log from Mon Sep 8 16:24:57 2025 ———
opened ChimeraX session
Showing Cage_1unit copy.seg - 296 regions, 296 surfaces
> lighting simple
> hide #!6 models
> show #!16 models
> show #!22 models
> hide #!22 models
> show #!52 models
> show #!53 models
> show #!65 models
> show #!97 models
> close #71,73-84
> close #58-59
> close #86
> close #122
> show #!513 models
> show #!514 models
> show #!316 models
> show #!312 models
> view orient
> turn x 90
[Repeated 6 time(s)]
> turn y 20
[Repeated 48 time(s)]
> save /Users/shoichi/Desktop/For-Osaka.cxs includeMaps true
——— End of log from Tue Oct 7 16:41:24 2025 ———
opened ChimeraX session
Showing Cage_1unit copy.seg - 296 regions, 296 surfaces
> close #6
> hide #!5.7 models
> show #!5.7 models
> hide #!5.6 models
> hide #!5.7 models
> hide #!5.8 models
> hide #!5.9 models
> hide #!5.10 models
> hide #!5.11 models
> hide #!5.12 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!8 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!17 models
> select add #183.2
6829 atoms, 6972 bonds, 843 residues, 1 model selected
> select subtract #183.2
1 model selected
> hide #!183.3 models
> hide #!183.4 models
> show #!183.3 models
> hide #!183.3 models
> hide #!183.2 models
> hide #!183.1 models
> hide #!183.18 models
> hide #!183.17 models
> hide #!183.16 models
> show #!183.1 models
> show #!183.2 models
> show #!183.3 models
> show #!183.4 models
> show #!183.16 models
> show #!183.17 models
> show #!183.18 models
> show #!8 models
> show #!9 models
> show #!10 models
> show #!11 models
> show #!12 models
> show #!13 models
> show #!14 models
> show #!15 models
> show #!17 models
> show #!5.6 models
> show #!5.7 models
> show #!5.8 models
> show #!5.9 models
> show #!5.10 models
> show #!5.11 models
> show #!5.12 models
> crossfade
> hide
> #!5.6#!5.7#!5.8#!5.9#!5.10#!5.11#!5.12#!8#!9#!10#!11#!12#!13#!14#!15#!17#!183.1#!183.2#!183.3#!183.4#!183.16#!183.17#!183.18
> models
> wait 50
> view name P50
> save /Users/shoichi/Desktop/For-Osaka-Movie.cxs includeMaps true
——— End of log from Fri Oct 10 16:39:33 2025 ———
opened ChimeraX session
> show #!5.6 models
> show #!5.7 models
> show #!5.8 models
> show #!5.9 models
> show #!5.10 models
> show #!5.11 models
> show #!5.12 models
> crossfade
> hide #!5.5#!5.6#!5.7#!5.8#!5.9#!5.10#!5.11#!5.12 models
> wait 60
> crossfade
> hide #!185.38#!185.37 models
> wait 60
> show #!185.37 models
> show #!185.38 models
> view P1
> view P2
> ui tool show "Side View"
> turn y 90
> volume #316 region 120,0,0,239,239,239
> turn y 90
> volume #316 region 0,120,0,239,239,239
> turn y 90
> volume #316 region 120,0,0,239,239,239
> turn y 90
> volume #313 region 0,60,0,120,120,120
> volume #313 region 60,0,0,120,120,120
> volume #316 region 0,0,0,239,239,239
> volume #316 region 0,120,0,239,239,239
> volume #316 region 120,0,0,239,239,239
> volume #484 region 120,0,0,239,239,239
> volume #316#513#514#16 region 120,0,0,239,239,239
> volume #316#513#514#16#312 region 120,0,0,239,239,239
> show #!5.5 models
> hide #!5.5 models
> select add #5.5
17888 atoms, 18233 bonds, 2172 residues, 1 model selected
> select add #5.12
35776 atoms, 36466 bonds, 4344 residues, 16 models selected
> show #!5.5 models
> show #!5.6 models
> show #!5.7 models
> show #!5.8 models
> show #!5.9 models
> show #!5.10 models
> show #!5.11 models
> show #!5.12 models
> hide #!5.4 models
> show #!5.4 models
> hide #!5.14 models
> show #!5.14 models
> hide #!5.17 models
> hide #!5.16 models
> hide #!5.15 models
> hide #!5.14 models
> hide #!5.18 models
> hide #!5.1 models
> hide #!5.2 models
> hide #!5.3 models
> hide #!167.4 models
> select clear
> show #!167.4 models
> hide #!167.18 models
> show #!167.18 models
> hide #!167.13 models
> show #!167.13 models
> hide #!167.12 models
> hide #!167.11 models
> hide #!167.10 models
> hide #!167.9 models
> hide #!167.8 models
> hide #!167.7 models
> hide #!167.6 models
> hide #!168.11 models
> show #!168.11 models
> hide #!168.11 models
> hide #!168.10 models
> hide #!168.12 models
> hide #!168.9 models
> hide #!168.8 models
> hide #!168.7 models
> hide #!168.6 models
> hide #!169.6 models
> hide #!169.7 models
> show #!169.6 models
> hide #!169.6 models
> hide #!169.8 models
> hide #!169.9 models
> hide #!169.10 models
> hide #!169.11 models
> hide #!169.12 models
> show #!183.1 models
> show #!183.2 models
> show #!183.3 models
> show #!183.4 models
> hide #!183.5 models
> show #!183.5 models
> hide #!183.6 models
> show #!183.6 models
> hide #!183.7 models
> show #!183.7 models
> hide #!183.7 models
> hide #!183.8 models
> hide #!183.9 models
> hide #!183.10 models
> hide #!183.11 models
> show #!183.16 models
> show #!183.17 models
> show #!183.18 models
> hide #!183.12 models
> hide #!183.13 models
> hide #!184.10 models
> hide #!184.11 models
> hide #!184.12 models
> hide #!184.13 models
> hide #!184.14 models
> hide #!184.15 models
> show #!184.15 models
> hide #!184.8 models
> hide #!184.1 models
> hide #!184.25 models
> hide #!184.7 models
> view name P1
> hide #!38 models
> hide #!39 models
> hide #!40 models
> hide #!41 models
> hide #!42 models
> hide #!43 models
> hide #!44 models
> hide #!52 models
> hide #!19 models
> hide #!18 models
> hide #!7 models
> show #!184.7 models
> hide #!184.26 models
> hide #!184.27 models
> hide #!184.28 models
> hide #!184.29 models
> hide #!184.30 models
> hide #!184.24 models
> show #!184.24 models
> hide #!184.31 models
> show #!184.31 models
> hide #!184.9 models
> hide #!185.44 models
> hide #!185.42 models
> show #!185.42 models
> hide #!185.47 models
> hide #!185.48 models
> hide #!185.51 models
> hide #!185.52 models
> hide #!185.1 models
> hide #!185.3 models
> show #!185.3 models
> hide #!185.13 models
> hide #!185.14 models
> hide #!185.17 models
> hide #!185.18 models
> view P1
> show #!52 models
> ui tool show "Side View"
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.8 (2024-06-10)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac Studio
Model Identifier: Mac13,1
Model Number: Z14J000E1LL/A
Chip: Apple M1 Max
Total Number of Cores: 10 (8 performance and 2 efficiency)
Memory: 64 GB
System Firmware Version: 11881.140.96
OS Loader Version: 11881.140.96
Software:
System Software Overview:
System Version: macOS 15.6 (24G84)
Kernel Version: Darwin 24.6.0
Time since boot: 10 days, 19 hours, 1 minute
Graphics/Displays:
Apple M1 Max:
Chipset Model: Apple M1 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 24
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Q24i-10:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
ASUS PA279:
Resolution: 6016 x 3384
UI Looks like: 3008 x 1692 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 2.4.1
Babel: 2.15.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 2.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.17
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.7
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.57.1
ChimeraX-AtomicLibrary: 14.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.4.6
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.12.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.7
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.8
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.3
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.4
ChimeraX-DiffPlot: 1.0
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.10
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.3
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.1
ChimeraX-MedicalToolbar: 1.0.3
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.17
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.5
ChimeraX-PDB: 2.7.5
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.4.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.0.15
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.16.5
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.39.1
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.2.1
cxservices: 1.2.2
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.1
decorator: 5.1.1
docutils: 0.20.1
executing: 2.0.1
filelock: 3.13.4
fonttools: 4.53.0
funcparserlib: 2.0.0a0
glfw: 2.7.0
grako: 3.16.5
h5py: 3.11.0
html2text: 2024.2.26
idna: 3.7
ihm: 1.0
imagecodecs: 2024.1.1
imagesize: 1.4.1
ipykernel: 6.29.2
ipython: 8.21.0
ipywidgets: 8.1.3
jedi: 0.19.1
jinja2: 3.1.4
jupyter-client: 8.6.0
jupyter-core: 5.7.2
jupyterlab-widgets: 3.0.11
kiwisolver: 1.4.5
line-profiler: 4.1.2
lxml: 5.2.1
lz4: 4.3.3
MarkupSafe: 2.1.5
matplotlib: 3.8.4
matplotlib-inline: 0.1.7
msgpack: 1.0.8
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.0
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.3.0
pip: 24.0
pkginfo: 1.10.0
platformdirs: 4.2.2
prompt-toolkit: 3.0.47
psutil: 5.9.8
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pygments: 2.17.2
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.1.2
pyproject-hooks: 1.1.0
PyQt6-commercial: 6.6.1
PyQt6-Qt6: 6.6.3
PyQt6-sip: 13.6.0
PyQt6-WebEngine-commercial: 6.6.0
PyQt6-WebEngine-Qt6: 6.6.3
python-dateutil: 2.9.0.post0
pytz: 2024.1
pyzmq: 26.0.3
qtconsole: 5.5.1
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.13.0
setuptools: 69.5.1
setuptools-scm: 8.0.4
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 7.2.6
sphinx-autodoc-typehints: 2.0.1
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2024.1.30
tinyarray: 1.2.4
tornado: 6.4.1
traitlets: 5.14.2
typing-extensions: 4.12.2
tzdata: 2024.1
urllib3: 2.2.1
wcwidth: 0.2.13
webcolors: 1.13
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.11
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