Changes between Initial Version and Version 1 of Ticket #19024


Ignore:
Timestamp:
Oct 6, 2025, 11:36:08 AM (2 weeks ago)
Author:
pett
Comment:

Legend:

Unmodified
Added
Removed
Modified

  • Ticket #19024

    • Property Component Unassigned → Window Toolkit
    • Property Owner set to Tom Goddard
    • Property Platform → all
    • Property Project → ChimeraX
    • Property Status new → assigned
    • Property Summary ChimeraX bug report submission → Crash on Mac waking from sleep

  • Ticket #19024 – Description

    initial v1  
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    1535     "path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-311-darwin.so",
    1536     "name" : "_mmcif.cpython-311-darwin.so"
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    1538   {
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    1545     "name" : "_pdbio.cpython-311-darwin.so"
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    1547   {
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    1552     "uuid" : "3c92d9be-9b63-3d45-838a-e4fd342ddf46",
    1553     "path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so",
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    1556   {
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    1561     "uuid" : "0ee9ca02-13c3-3c35-99ec-fdcf207a8b79",
    1562     "path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/_elementpath.cpython-311-darwin.so",
    1563     "name" : "_elementpath.cpython-311-darwin.so"
    1564   },
    1565   {
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    1571     "path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/PIL\/_imagingmath.cpython-311-darwin.so",
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    1574   {
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    1580     "path" : "\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/chimerax\/segment\/_segment.cpython-311-darwin.so",
    1581     "name" : "_segment.cpython-311-darwin.so"
    1582   },
    1583   {
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    1588     "uuid" : "6e4a96ad-04b8-3e8a-b91d-087e62306246",
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    1592   {
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    1597     "uuid" : "d6494ba9-171e-39fc-b1aa-28ecf87975d1",
    1598     "path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
    1599     "name" : "libsystem_pthread.dylib"
    1600   },
    1601   {
    1602     "source" : "P",
    1603     "arch" : "arm64e",
    1604     "base" : 6913392640,
    1605     "size" : 528964,
    1606     "uuid" : "dfea8794-80ce-37c3-8f6a-108aa1d0b1b0",
    1607     "path" : "\/usr\/lib\/system\/libsystem_c.dylib",
    1608     "name" : "libsystem_c.dylib"
    1609   },
    1610   {
    1611     "source" : "P",
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    1615     "uuid" : "fd19a599-8750-31f9-924f-c2810c938371",
    1616     "path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
    1617     "name" : "libsystem_platform.dylib"
    1618   },
    1619   {
    1620     "source" : "P",
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    1627     "path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
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    1638     "uuid" : "4e052846-80c2-38af-85bf-1482e070a32b",
    1639     "path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
    1640     "name" : "SkyLight"
    1641   },
    1642   {
    1643     "source" : "P",
    1644     "arch" : "arm64e",
    1645     "base" : 6913089536,
    1646     "size" : 288608,
    1647     "uuid" : "24ce0d89-4114-30c2-a81a-3db1f5931cff",
    1648     "path" : "\/usr\/lib\/system\/libdispatch.dylib",
    1649     "name" : "libdispatch.dylib"
    1650   },
    1651   {
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    1662   },
    1663   {
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    1672     "name" : "HIToolbox"
    1673   },
    1674   {
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    1697   }
     155[deleted to fit within ticket limits]
     156
    1698157],
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    … …  
    27211180shown at level 0.000848, step 1, values float32 
    27221181Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    2723 shown at level 0.000848, step 1, values float32 
    2724 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    2725 shown at level 0.000848, step 1, values float32 
    2726 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    2727 shown at level 0.000848, step 1, values float32 
    2728 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    2729 shown at level 0.000848, step 1, values float32 
    2730 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    2731 shown at level 0.000848, step 1, values float32 
    2732 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    2733 2.14, shown at level 0.000997, step 1, values float32 
    2734 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    2735 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2736 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    2737 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2738 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    2739 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2740 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    2741 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2742 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    2743 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2744 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    2745 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2746 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    2747 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2748 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    2749 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2750 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    2751 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2752 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
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    2754 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    2755 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2756 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    2757 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2758 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
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    2760 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    2761 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2762 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    2763 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2764 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    2765 pixel 2.14, shown at level 0.000997, step 1, values float32 
    2766 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
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    2768 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    2769 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    2770 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
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    2772 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    2773 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    2774 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    2775 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    2776 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
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    2778 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    2779 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    2780 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    2781 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    2782 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
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    2784 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
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    2786 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
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    2788 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
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    2790 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
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    2792 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
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    2800 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
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    2802 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
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    2804 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
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    2806 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
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    2808 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
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    2810 Log from Wed Sep 10 10:14:24 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    2811 © 2016-2024 Regents of the University of California. All rights reserved. 
    2812 
    2813 > open /Users/shoichi/Desktop/For_Composition-
    2814 > maps/Building_Whole_Model_09102025.cxs
    2815 
    2816 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    2817 level 0.0137, step 1, values float32 
    2818 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    2819 step 1, values float32 
    2820 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
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    2822 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    2823 level 0.0137, step 1, values float32 
    2824 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    2825 level 0.027, step 1, values float32 
    2826 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    2827 step 1, values float32 
    2828 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
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    2830 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    2831 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2832 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    2833 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2834 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    2835 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2836 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    2837 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2838 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    2839 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2840 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    2841 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2842 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    2843 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2844 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    2845 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2846 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    2847 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2848 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    2849 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2850 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    2851 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2852 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    2853 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2854 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    2855 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2856 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    2857 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2858 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    2859 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2860 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    2861 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2862 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    2863 pixel 2.14, shown at level 0.000576, step 1, values float32 
    2864 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    2865 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2866 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    2867 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2868 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    2869 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2870 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    2871 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2872 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    2873 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2874 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    2875 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2876 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    2877 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2878 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    2879 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2880 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    2881 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2882 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    2883 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2884 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    2885 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2886 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    2887 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2888 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    2889 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2890 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    2891 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2892 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    2893 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2894 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    2895 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2896 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    2897 pixel 2.14, shown at level 0.000793, step 1, values float32 
    2898 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    2899 shown at level 0.000785, step 1, values float32 
    2900 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    2901 shown at level 0.000785, step 1, values float32 
    2902 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    2903 shown at level 0.000785, step 1, values float32 
    2904 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    2905 shown at level 0.000785, step 1, values float32 
    2906 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    2907 shown at level 0.000785, step 1, values float32 
    2908 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    2909 shown at level 0.000785, step 1, values float32 
    2910 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    2911 shown at level 0.000785, step 1, values float32 
    2912 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    2913 shown at level 0.000785, step 1, values float32 
    2914 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    2915 shown at level 0.000785, step 1, values float32 
    2916 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    2917 shown at level 0.000785, step 1, values float32 
    2918 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    2919 shown at level 0.000785, step 1, values float32 
    2920 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    2921 shown at level 0.000785, step 1, values float32 
    2922 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    2923 shown at level 0.000785, step 1, values float32 
    2924 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    2925 shown at level 0.000785, step 1, values float32 
    2926 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    2927 shown at level 0.000785, step 1, values float32 
    2928 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    2929 shown at level 0.000785, step 1, values float32 
    2930 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    2931 shown at level 0.000785, step 1, values float32 
    2932 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    2933 shown at level 0.00107, step 1, values float32 
    2934 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    2935 shown at level 0.00107, step 1, values float32 
    2936 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    2937 shown at level 0.00107, step 1, values float32 
    2938 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    2939 shown at level 0.00107, step 1, values float32 
    2940 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    2941 shown at level 0.00107, step 1, values float32 
    2942 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    2943 shown at level 0.00107, step 1, values float32 
    2944 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    2945 shown at level 0.00107, step 1, values float32 
    2946 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    2947 shown at level 0.00107, step 1, values float32 
    2948 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    2949 shown at level 0.00107, step 1, values float32 
    2950 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    2951 shown at level 0.00107, step 1, values float32 
    2952 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    2953 shown at level 0.00107, step 1, values float32 
    2954 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    2955 shown at level 0.00107, step 1, values float32 
    2956 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    2957 shown at level 0.00107, step 1, values float32 
    2958 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    2959 shown at level 0.00107, step 1, values float32 
    2960 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    2961 shown at level 0.00107, step 1, values float32 
    2962 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    2963 shown at level 0.00107, step 1, values float32 
    2964 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    2965 shown at level 0.00107, step 1, values float32 
    2966 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    2967 shown at level 0.000848, step 1, values float32 
    2968 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    2969 shown at level 0.000848, step 1, values float32 
    2970 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    2971 shown at level 0.000848, step 1, values float32 
    2972 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    2973 shown at level 0.000848, step 1, values float32 
    2974 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    2975 shown at level 0.000848, step 1, values float32 
    2976 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    2977 shown at level 0.000848, step 1, values float32 
    2978 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    2979 shown at level 0.000848, step 1, values float32 
    2980 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    2981 shown at level 0.000848, step 1, values float32 
    2982 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    2983 shown at level 0.000848, step 1, values float32 
    2984 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    2985 shown at level 0.000848, step 1, values float32 
    2986 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    2987 shown at level 0.000848, step 1, values float32 
    2988 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    2989 shown at level 0.000848, step 1, values float32 
    2990 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    2991 shown at level 0.000848, step 1, values float32 
    2992 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    2993 shown at level 0.000848, step 1, values float32 
    2994 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    2995 shown at level 0.000848, step 1, values float32 
    2996 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    2997 shown at level 0.000848, step 1, values float32 
    2998 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    2999 shown at level 0.000848, step 1, values float32 
    3000 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    3001 2.14, shown at level 0.000997, step 1, values float32 
    3002 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    3003 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3004 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    3005 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3006 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    3007 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3008 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    3009 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3010 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    3011 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3012 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    3013 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3014 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    3015 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3016 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    3017 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3018 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    3019 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3020 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    3021 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3022 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    3023 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3024 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    3025 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3026 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    3027 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3028 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    3029 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3030 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    3031 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3032 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    3033 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3034 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    3035 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3036 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    3037 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3038 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    3039 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3040 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    3041 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3042 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    3043 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3044 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    3045 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3046 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    3047 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3048 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    3049 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3050 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    3051 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3052 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    3053 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3054 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    3055 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3056 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    3057 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3058 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    3059 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3060 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    3061 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3062 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    3063 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3064 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    3065 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3066 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    3067 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3068 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    3069 shown at level 0.0112, step 1, values float32 
    3070 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    3071 2.14, shown at level 0.00974, step 1, values float32 
    3072 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    3073 level 0.157, step 1, values float32 
    3074 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    3075 0.0283, step 1, values float32 
    3076 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    3077 level 0.00404, step 1, values float32 
    3078 Log from Wed Sep 10 09:47:44 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    3079 © 2016-2024 Regents of the University of California. All rights reserved. 
    3080 
    3081 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    3082 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    3083 > review/Updated_Figures/09092025/For_Composition-
    3084 > maps/Cleanup3_Building_Composition.cxs"
    3085 
    3086 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    3087 level 0.0137, step 1, values float32 
    3088 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    3089 step 1, values float32 
    3090 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    3091 level 0.0137, step 1, values float32 
    3092 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    3093 level 0.0137, step 1, values float32 
    3094 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    3095 level 0.027, step 1, values float32 
    3096 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    3097 step 1, values float32 
    3098 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    3099 level 0.0166, step 1, values float32 
    3100 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    3101 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3102 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    3103 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3104 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    3105 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3106 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    3107 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3108 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    3109 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3110 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    3111 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3112 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    3113 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3114 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    3115 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3116 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    3117 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3118 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    3119 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3120 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    3121 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3122 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    3123 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3124 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    3125 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3126 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    3127 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3128 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    3129 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3130 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    3131 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3132 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    3133 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3134 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    3135 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3136 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    3137 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3138 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    3139 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3140 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    3141 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3142 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    3143 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3144 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    3145 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3146 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    3147 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3148 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    3149 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3150 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    3151 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3152 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    3153 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3154 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    3155 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3156 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    3157 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3158 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    3159 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3160 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    3161 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3162 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    3163 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3164 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    3165 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3166 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    3167 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3168 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    3169 shown at level 0.000785, step 1, values float32 
    3170 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    3171 shown at level 0.000785, step 1, values float32 
    3172 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    3173 shown at level 0.000785, step 1, values float32 
    3174 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    3175 shown at level 0.000785, step 1, values float32 
    3176 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    3177 shown at level 0.000785, step 1, values float32 
    3178 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    3179 shown at level 0.000785, step 1, values float32 
    3180 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    3181 shown at level 0.000785, step 1, values float32 
    3182 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    3183 shown at level 0.000785, step 1, values float32 
    3184 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    3185 shown at level 0.000785, step 1, values float32 
    3186 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    3187 shown at level 0.000785, step 1, values float32 
    3188 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    3189 shown at level 0.000785, step 1, values float32 
    3190 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    3191 shown at level 0.000785, step 1, values float32 
    3192 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    3193 shown at level 0.000785, step 1, values float32 
    3194 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    3195 shown at level 0.000785, step 1, values float32 
    3196 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    3197 shown at level 0.000785, step 1, values float32 
    3198 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    3199 shown at level 0.000785, step 1, values float32 
    3200 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    3201 shown at level 0.000785, step 1, values float32 
    3202 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    3203 shown at level 0.00107, step 1, values float32 
    3204 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    3205 shown at level 0.00107, step 1, values float32 
    3206 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    3207 shown at level 0.00107, step 1, values float32 
    3208 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    3209 shown at level 0.00107, step 1, values float32 
    3210 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    3211 shown at level 0.00107, step 1, values float32 
    3212 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    3213 shown at level 0.00107, step 1, values float32 
    3214 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    3215 shown at level 0.00107, step 1, values float32 
    3216 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    3217 shown at level 0.00107, step 1, values float32 
    3218 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    3219 shown at level 0.00107, step 1, values float32 
    3220 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    3221 shown at level 0.00107, step 1, values float32 
    3222 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    3223 shown at level 0.00107, step 1, values float32 
    3224 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    3225 shown at level 0.00107, step 1, values float32 
    3226 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    3227 shown at level 0.00107, step 1, values float32 
    3228 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    3229 shown at level 0.00107, step 1, values float32 
    3230 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    3231 shown at level 0.00107, step 1, values float32 
    3232 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    3233 shown at level 0.00107, step 1, values float32 
    3234 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    3235 shown at level 0.00107, step 1, values float32 
    3236 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    3237 shown at level 0.000848, step 1, values float32 
    3238 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    3239 shown at level 0.000848, step 1, values float32 
    3240 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    3241 shown at level 0.000848, step 1, values float32 
    3242 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    3243 shown at level 0.000848, step 1, values float32 
    3244 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    3245 shown at level 0.000848, step 1, values float32 
    3246 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    3247 shown at level 0.000848, step 1, values float32 
    3248 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    3249 shown at level 0.000848, step 1, values float32 
    3250 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    3251 shown at level 0.000848, step 1, values float32 
    3252 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    3253 shown at level 0.000848, step 1, values float32 
    3254 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    3255 shown at level 0.000848, step 1, values float32 
    3256 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    3257 shown at level 0.000848, step 1, values float32 
    3258 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    3259 shown at level 0.000848, step 1, values float32 
    3260 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    3261 shown at level 0.000848, step 1, values float32 
    3262 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    3263 shown at level 0.000848, step 1, values float32 
    3264 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    3265 shown at level 0.000848, step 1, values float32 
    3266 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    3267 shown at level 0.000848, step 1, values float32 
    3268 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    3269 shown at level 0.000848, step 1, values float32 
    3270 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    3271 2.14, shown at level 0.000997, step 1, values float32 
    3272 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    3273 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3274 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    3275 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3276 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    3277 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3278 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    3279 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3280 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    3281 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3282 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    3283 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3284 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    3285 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3286 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    3287 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3288 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    3289 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3290 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    3291 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3292 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    3293 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3294 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    3295 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3296 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    3297 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3298 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    3299 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3300 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    3301 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3302 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    3303 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3304 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    3305 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3306 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    3307 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3308 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    3309 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3310 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    3311 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3312 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    3313 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3314 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    3315 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3316 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    3317 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3318 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    3319 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3320 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    3321 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3322 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    3323 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3324 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    3325 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3326 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    3327 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3328 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    3329 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3330 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    3331 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3332 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    3333 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3334 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    3335 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3336 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    3337 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3338 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    3339 shown at level 0.0112, step 1, values float32 
    3340 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    3341 2.14, shown at level 0.00974, step 1, values float32 
    3342 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    3343 level 0.157, step 1, values float32 
    3344 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    3345 0.0283, step 1, values float32 
    3346 Log from Tue Sep 9 15:35:44 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    3347 © 2016-2024 Regents of the University of California. All rights reserved. 
    3348 
    3349 > open /Users/shoichi/Desktop/For_Composition-
    3350 > maps/Cleanup_Building_Composition.cxs
    3351 
    3352 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    3353 level 0.0137, step 1, values float32 
    3354 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    3355 0.0137, step 1, values float32 
    3356 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    3357 step 1, values float32 
    3358 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    3359 level 0.0137, step 1, values float32 
    3360 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    3361 0.0137, step 1, values float32 
    3362 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    3363 level 0.0137, step 1, values float32 
    3364 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    3365 level 0.0137, step 1, values float32 
    3366 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    3367 level 0.027, step 1, values float32 
    3368 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    3369 step 1, values float32 
    3370 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    3371 level 0.0166, step 1, values float32 
    3372 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    3373 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3374 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    3375 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3376 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    3377 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3378 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    3379 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3380 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    3381 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3382 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    3383 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3384 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    3385 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3386 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    3387 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3388 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    3389 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3390 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    3391 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3392 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    3393 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3394 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    3395 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3396 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    3397 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3398 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    3399 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3400 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    3401 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3402 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    3403 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3404 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    3405 pixel 2.14, shown at level 0.000576, step 1, values float32 
    3406 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    3407 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3408 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    3409 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3410 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    3411 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3412 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    3413 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3414 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    3415 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3416 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    3417 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3418 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    3419 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3420 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    3421 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3422 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    3423 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3424 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    3425 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3426 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    3427 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3428 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    3429 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3430 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    3431 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3432 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    3433 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3434 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    3435 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3436 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    3437 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3438 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    3439 pixel 2.14, shown at level 0.000793, step 1, values float32 
    3440 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    3441 shown at level 0.000785, step 1, values float32 
    3442 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    3443 shown at level 0.000785, step 1, values float32 
    3444 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    3445 shown at level 0.000785, step 1, values float32 
    3446 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    3447 shown at level 0.000785, step 1, values float32 
    3448 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    3449 shown at level 0.000785, step 1, values float32 
    3450 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    3451 shown at level 0.000785, step 1, values float32 
    3452 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    3453 shown at level 0.000785, step 1, values float32 
    3454 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    3455 shown at level 0.000785, step 1, values float32 
    3456 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    3457 shown at level 0.000785, step 1, values float32 
    3458 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    3459 shown at level 0.000785, step 1, values float32 
    3460 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    3461 shown at level 0.000785, step 1, values float32 
    3462 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    3463 shown at level 0.000785, step 1, values float32 
    3464 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    3465 shown at level 0.000785, step 1, values float32 
    3466 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    3467 shown at level 0.000785, step 1, values float32 
    3468 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    3469 shown at level 0.000785, step 1, values float32 
    3470 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    3471 shown at level 0.000785, step 1, values float32 
    3472 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    3473 shown at level 0.000785, step 1, values float32 
    3474 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    3475 shown at level 0.00107, step 1, values float32 
    3476 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    3477 shown at level 0.00107, step 1, values float32 
    3478 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    3479 shown at level 0.00107, step 1, values float32 
    3480 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    3481 shown at level 0.00107, step 1, values float32 
    3482 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    3483 shown at level 0.00107, step 1, values float32 
    3484 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    3485 shown at level 0.00107, step 1, values float32 
    3486 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    3487 shown at level 0.00107, step 1, values float32 
    3488 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    3489 shown at level 0.00107, step 1, values float32 
    3490 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    3491 shown at level 0.00107, step 1, values float32 
    3492 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    3493 shown at level 0.00107, step 1, values float32 
    3494 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    3495 shown at level 0.00107, step 1, values float32 
    3496 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    3497 shown at level 0.00107, step 1, values float32 
    3498 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    3499 shown at level 0.00107, step 1, values float32 
    3500 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    3501 shown at level 0.00107, step 1, values float32 
    3502 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    3503 shown at level 0.00107, step 1, values float32 
    3504 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    3505 shown at level 0.00107, step 1, values float32 
    3506 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    3507 shown at level 0.00107, step 1, values float32 
    3508 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    3509 shown at level 0.000848, step 1, values float32 
    3510 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    3511 shown at level 0.000848, step 1, values float32 
    3512 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    3513 shown at level 0.000848, step 1, values float32 
    3514 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    3515 shown at level 0.000848, step 1, values float32 
    3516 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    3517 shown at level 0.000848, step 1, values float32 
    3518 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    3519 shown at level 0.000848, step 1, values float32 
    3520 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    3521 shown at level 0.000848, step 1, values float32 
    3522 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    3523 shown at level 0.000848, step 1, values float32 
    3524 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    3525 shown at level 0.000848, step 1, values float32 
    3526 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    3527 shown at level 0.000848, step 1, values float32 
    3528 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    3529 shown at level 0.000848, step 1, values float32 
    3530 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    3531 shown at level 0.000848, step 1, values float32 
    3532 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    3533 shown at level 0.000848, step 1, values float32 
    3534 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    3535 shown at level 0.000848, step 1, values float32 
    3536 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    3537 shown at level 0.000848, step 1, values float32 
    3538 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    3539 shown at level 0.000848, step 1, values float32 
    3540 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    3541 shown at level 0.000848, step 1, values float32 
    3542 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    3543 2.14, shown at level 0.000997, step 1, values float32 
    3544 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    3545 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3546 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    3547 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3548 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    3549 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3550 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    3551 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3552 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    3553 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3554 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    3555 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3556 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    3557 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3558 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    3559 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3560 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    3561 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3562 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    3563 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3564 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    3565 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3566 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    3567 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3568 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    3569 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3570 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    3571 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3572 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    3573 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3574 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    3575 pixel 2.14, shown at level 0.000997, step 1, values float32 
    3576 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    3577 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3578 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    3579 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3580 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    3581 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3582 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    3583 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3584 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    3585 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3586 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    3587 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3588 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    3589 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3590 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    3591 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3592 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    3593 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3594 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    3595 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3596 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    3597 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3598 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    3599 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3600 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    3601 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3602 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    3603 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3604 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    3605 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3606 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    3607 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3608 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    3609 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    3610 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    3611 shown at level 0.0112, step 1, values float32 
    3612 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    3613 2.14, shown at level 0.00974, step 1, values float32 
    3614 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    3615 level 0.157, step 1, values float32 
    3616 Log from Tue Sep 9 13:34:58 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    3617 © 2016-2024 Regents of the University of California. All rights reserved. 
    3618 
    3619 > open /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    3620 
    3621 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    3622 level 0.0137, step 1, values float32 
    3623 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    3624 0.0137, step 1, values float32 
    3625 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    3626 step 1, values float32 
    3627 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    3628 shown at level 0.0137, step 1, values float32 
    3629 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    3630 shown at level 0.0137, step 1, values float32 
    3631 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    3632 shown at level 0.0137, step 1, values float32 
    3633 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    3634 shown at level 0.0137, step 1, values float32 
    3635 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    3636 shown at level 0.0137, step 1, values float32 
    3637 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    3638 shown at level 0.0137, step 1, values float32 
    3639 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    3640 shown at level 0.0137, step 1, values float32 
    3641 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    3642 shown at level 0.0137, step 1, values float32 
    3643 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    3644 shown at level 0.0137, step 1, values float32 
    3645 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    3646 shown at level 0.0137, step 1, values float32 
    3647 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    3648 shown at level 0.0137, step 1, values float32 
    3649 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    3650 shown at level 0.0137, step 1, values float32 
    3651 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    3652 shown at level 0.0137, step 1, values float32 
    3653 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    3654 shown at level 0.0137, step 1, values float32 
    3655 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    3656 shown at level 0.0137, step 1, values float32 
    3657 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    3658 shown at level 0.0137, step 1, values float32 
    3659 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    3660 0.0137, step 1, values float32 
    3661 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    3662 level 0.0137, step 1, values float32 
    3663 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    3664 level 0.0137, step 1, values float32 
    3665 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    3666 level 0.0137, step 1, values float32 
    3667 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    3668 level 0.0137, step 1, values float32 
    3669 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    3670 level 0.0137, step 1, values float32 
    3671 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    3672 level 0.0137, step 1, values float32 
    3673 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    3674 level 0.0137, step 1, values float32 
    3675 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    3676 level 0.0137, step 1, values float32 
    3677 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    3678 level 0.0137, step 1, values float32 
    3679 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    3680 level 0.0137, step 1, values float32 
    3681 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    3682 level 0.0137, step 1, values float32 
    3683 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    3684 level 0.0137, step 1, values float32 
    3685 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    3686 level 0.0137, step 1, values float32 
    3687 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    3688 level 0.0137, step 1, values float32 
    3689 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    3690 level 0.0137, step 1, values float32 
    3691 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    3692 level 0.0137, step 1, values float32 
    3693 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    3694 level 0.0137, step 1, values float32 
    3695 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    3696 level 0.0137, step 1, values float32 
    3697 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    3698 level 0.0137, step 1, values float32 
    3699 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    3700 level 0.0137, step 1, values float32 
    3701 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    3702 level 0.0137, step 1, values float32 
    3703 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    3704 level 0.0137, step 1, values float32 
    3705 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    3706 level 0.0137, step 1, values float32 
    3707 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    3708 level 0.0137, step 1, values float32 
    3709 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    3710 level 0.0137, step 1, values float32 
    3711 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    3712 level 0.0137, step 1, values float32 
    3713 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    3714 level 0.0137, step 1, values float32 
    3715 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    3716 level 0.0137, step 1, values float32 
    3717 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    3718 level 0.0137, step 1, values float32 
    3719 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    3720 level 0.0137, step 1, values float32 
    3721 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    3722 level 0.0137, step 1, values float32 
    3723 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    3724 level 0.0137, step 1, values float32 
    3725 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    3726 level 0.0137, step 1, values float32 
    3727 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    3728 level 0.0137, step 1, values float32 
    3729 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    3730 level 0.0137, step 1, values float32 
    3731 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    3732 0.0137, step 1, values float32 
    3733 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    3734 level 0.0137, step 1, values float32 
    3735 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    3736 at level 0.0137, step 1, values float32 
    3737 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    3738 at level 0.0137, step 1, values float32 
    3739 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    3740 at level 0.0137, step 1, values float32 
    3741 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    3742 at level 0.0137, step 1, values float32 
    3743 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    3744 at level 0.0137, step 1, values float32 
    3745 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    3746 at level 0.0137, step 1, values float32 
    3747 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    3748 at level 0.0137, step 1, values float32 
    3749 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    3750 at level 0.0137, step 1, values float32 
    3751 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    3752 at level 0.0137, step 1, values float32 
    3753 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    3754 at level 0.0137, step 1, values float32 
    3755 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    3756 at level 0.0137, step 1, values float32 
    3757 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    3758 at level 0.0137, step 1, values float32 
    3759 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    3760 at level 0.0137, step 1, values float32 
    3761 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    3762 at level 0.0137, step 1, values float32 
    3763 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    3764 at level 0.0137, step 1, values float32 
    3765 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    3766 at level 0.0137, step 1, values float32 
    3767 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    3768 at level 0.0137, step 1, values float32 
    3769 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    3770 0.0137, step 1, values float32 
    3771 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    3772 level 0.114, step 1, values float32 
    3773 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    3774 at level 0.0137, step 1, values float32 
    3775 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    3776 at level 0.0595, step 1, values float32 
    3777 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    3778 level 0.0137, step 1, values float32 
    3779 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    3780 0.0137, step 1, values float32 
    3781 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    3782 level 0.0137, step 1, values float32 
    3783 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    3784 level 0.0137, step 1, values float32 
    3785 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    3786 0.0137, step 1, values float32 
    3787 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    3788 level 0.0439, step 1, values float32 
    3789 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    3790 0.0137, step 1, values float32 
    3791 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    3792 level 0.0137, step 1, values float32 
    3793 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    3794 level 0.027, step 1, values float32 
    3795 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    3796 step 1, values float32 
    3797 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    3798 level 0.0166, step 1, values float32 
    3799 Opened C17-FlgY_New.mrc as #90, grid size 256,256,256, pixel 2.14, shown at
    3800 level 0.0212, step 1, values float32 
    3801 Opened MS-ring_New.mrc as #91, grid size 256,256,256, pixel 2.14, shown at
    3802 level 0.0165, step 1, values float32 
    3803 Opened Single_Cage_unit.mrc as #92, grid size 200,200,200, pixel 2.14, shown
    3804 at level 0.00159, step 1, values float32 
    3805 Opened 1unit_PflABCD.mrc as #94, grid size 200,200,200, pixel 2.14, shown at
    3806 level 0.0064, step 1, values float32 
    3807 Opened 1xMotBpg-09092025.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    3808 at level 0.00231, step 1, values float32 
    3809 Opened 1xPflD.mrc as #95, grid size 200,200,200, pixel 2.14, shown at level
    3810 0.00228, step 1, values float32 
    3811 Opened 1xPflC.mrc as #96, grid size 200,200,200, pixel 2.14, shown at level
    3812 0.00265, step 1, values float32 
    3813 Opened Single-MotA-ring.mrc as #97, grid size 200,200,200, pixel 2.14, shown
    3814 at level 0.00252, step 1, values float32 
    3815 Opened 1xPflAB_region.mrc as #98, grid size 200,200,200, pixel 2.14, shown at
    3816 level 0.00102, step 1, values float32 
    3817 Log from Tue Sep 9 11:45:50 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    3818 © 2016-2024 Regents of the University of California. All rights reserved. 
    3819 
    3820 > open /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    3821 
    3822 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    3823 level 0.0137, step 1, values float32 
    3824 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    3825 0.0137, step 1, values float32 
    3826 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    3827 step 1, values float32 
    3828 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    3829 shown at level 0.0137, step 1, values float32 
    3830 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    3831 shown at level 0.0137, step 1, values float32 
    3832 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    3833 shown at level 0.0137, step 1, values float32 
    3834 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    3835 shown at level 0.0137, step 1, values float32 
    3836 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    3837 shown at level 0.0137, step 1, values float32 
    3838 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    3839 shown at level 0.0137, step 1, values float32 
    3840 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    3841 shown at level 0.0137, step 1, values float32 
    3842 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    3843 shown at level 0.0137, step 1, values float32 
    3844 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    3845 shown at level 0.0137, step 1, values float32 
    3846 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    3847 shown at level 0.0137, step 1, values float32 
    3848 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    3849 shown at level 0.0137, step 1, values float32 
    3850 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    3851 shown at level 0.0137, step 1, values float32 
    3852 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    3853 shown at level 0.0137, step 1, values float32 
    3854 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    3855 shown at level 0.0137, step 1, values float32 
    3856 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    3857 shown at level 0.0137, step 1, values float32 
    3858 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    3859 shown at level 0.0137, step 1, values float32 
    3860 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    3861 0.0137, step 1, values float32 
    3862 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    3863 level 0.0137, step 1, values float32 
    3864 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    3865 level 0.0137, step 1, values float32 
    3866 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    3867 level 0.0137, step 1, values float32 
    3868 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    3869 level 0.0137, step 1, values float32 
    3870 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    3871 level 0.0137, step 1, values float32 
    3872 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    3873 level 0.0137, step 1, values float32 
    3874 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    3875 level 0.0137, step 1, values float32 
    3876 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    3877 level 0.0137, step 1, values float32 
    3878 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    3879 level 0.0137, step 1, values float32 
    3880 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    3881 level 0.0137, step 1, values float32 
    3882 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    3883 level 0.0137, step 1, values float32 
    3884 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    3885 level 0.0137, step 1, values float32 
    3886 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    3887 level 0.0137, step 1, values float32 
    3888 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    3889 level 0.0137, step 1, values float32 
    3890 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    3891 level 0.0137, step 1, values float32 
    3892 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    3893 level 0.0137, step 1, values float32 
    3894 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    3895 level 0.0137, step 1, values float32 
    3896 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    3897 level 0.0137, step 1, values float32 
    3898 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    3899 level 0.0137, step 1, values float32 
    3900 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    3901 level 0.0137, step 1, values float32 
    3902 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    3903 level 0.0137, step 1, values float32 
    3904 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    3905 level 0.0137, step 1, values float32 
    3906 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    3907 level 0.0137, step 1, values float32 
    3908 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    3909 level 0.0137, step 1, values float32 
    3910 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    3911 level 0.0137, step 1, values float32 
    3912 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    3913 level 0.0137, step 1, values float32 
    3914 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    3915 level 0.0137, step 1, values float32 
    3916 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    3917 level 0.0137, step 1, values float32 
    3918 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    3919 level 0.0137, step 1, values float32 
    3920 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    3921 level 0.0137, step 1, values float32 
    3922 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    3923 level 0.0137, step 1, values float32 
    3924 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    3925 level 0.0137, step 1, values float32 
    3926 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    3927 level 0.0137, step 1, values float32 
    3928 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    3929 level 0.0137, step 1, values float32 
    3930 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    3931 level 0.0137, step 1, values float32 
    3932 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    3933 0.0137, step 1, values float32 
    3934 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    3935 level 0.0137, step 1, values float32 
    3936 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    3937 at level 0.0137, step 1, values float32 
    3938 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    3939 at level 0.0137, step 1, values float32 
    3940 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    3941 at level 0.0137, step 1, values float32 
    3942 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    3943 at level 0.0137, step 1, values float32 
    3944 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    3945 at level 0.0137, step 1, values float32 
    3946 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    3947 at level 0.0137, step 1, values float32 
    3948 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    3949 at level 0.0137, step 1, values float32 
    3950 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    3951 at level 0.0137, step 1, values float32 
    3952 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    3953 at level 0.0137, step 1, values float32 
    3954 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    3955 at level 0.0137, step 1, values float32 
    3956 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    3957 at level 0.0137, step 1, values float32 
    3958 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    3959 at level 0.0137, step 1, values float32 
    3960 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    3961 at level 0.0137, step 1, values float32 
    3962 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    3963 at level 0.0137, step 1, values float32 
    3964 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    3965 at level 0.0137, step 1, values float32 
    3966 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    3967 at level 0.0137, step 1, values float32 
    3968 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    3969 at level 0.0137, step 1, values float32 
    3970 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    3971 0.0137, step 1, values float32 
    3972 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    3973 level 0.114, step 1, values float32 
    3974 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    3975 at level 0.0137, step 1, values float32 
    3976 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    3977 at level 0.0595, step 1, values float32 
    3978 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    3979 level 0.0137, step 1, values float32 
    3980 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    3981 0.0137, step 1, values float32 
    3982 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    3983 level 0.0137, step 1, values float32 
    3984 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    3985 level 0.0137, step 1, values float32 
    3986 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    3987 0.0137, step 1, values float32 
    3988 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    3989 level 0.0439, step 1, values float32 
    3990 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    3991 0.0137, step 1, values float32 
    3992 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    3993 level 0.0137, step 1, values float32 
    3994 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    3995 level 0.027, step 1, values float32 
    3996 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    3997 step 1, values float32 
    3998 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    3999 level 0.0166, step 1, values float32 
    4000 Opened C17-FlgY_New.mrc as #90, grid size 256,256,256, pixel 2.14, shown at
    4001 level 0.0212, step 1, values float32 
    4002 Opened MS-ring_New.mrc as #91, grid size 256,256,256, pixel 2.14, shown at
    4003 level 0.0165, step 1, values float32 
    4004 Opened Single_Cage_unit.mrc as #92, grid size 200,200,200, pixel 2.14, shown
    4005 at level 0.00159, step 1, values float32 
    4006 Opened Single_MotBpg_unit.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    4007 at level 0.000906, step 1, values float32 
    4008 Log from Tue Sep 9 10:34:35 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4009 © 2016-2024 Regents of the University of California. All rights reserved. 
    4010 
    4011 > open /Users/shoichi/Desktop/For_Composition-maps/Global_Segment_Fig1.cxs
    4012 
    4013 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    4014 level 0.0137, step 1, values float32 
    4015 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    4016 0.0137, step 1, values float32 
    4017 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    4018 step 1, values float32 
    4019 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    4020 shown at level 0.0137, step 1, values float32 
    4021 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    4022 shown at level 0.0137, step 1, values float32 
    4023 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    4024 shown at level 0.0137, step 1, values float32 
    4025 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    4026 shown at level 0.0137, step 1, values float32 
    4027 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    4028 shown at level 0.0137, step 1, values float32 
    4029 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    4030 shown at level 0.0137, step 1, values float32 
    4031 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    4032 shown at level 0.0137, step 1, values float32 
    4033 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    4034 shown at level 0.0137, step 1, values float32 
    4035 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    4036 shown at level 0.0137, step 1, values float32 
    4037 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    4038 shown at level 0.0137, step 1, values float32 
    4039 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    4040 shown at level 0.0137, step 1, values float32 
    4041 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    4042 shown at level 0.0137, step 1, values float32 
    4043 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    4044 shown at level 0.0137, step 1, values float32 
    4045 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    4046 shown at level 0.0137, step 1, values float32 
    4047 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    4048 shown at level 0.0137, step 1, values float32 
    4049 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    4050 shown at level 0.0137, step 1, values float32 
    4051 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    4052 0.0137, step 1, values float32 
    4053 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    4054 level 0.0137, step 1, values float32 
    4055 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    4056 level 0.0137, step 1, values float32 
    4057 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    4058 level 0.0137, step 1, values float32 
    4059 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    4060 level 0.0137, step 1, values float32 
    4061 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    4062 level 0.0137, step 1, values float32 
    4063 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    4064 level 0.0137, step 1, values float32 
    4065 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    4066 level 0.0137, step 1, values float32 
    4067 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    4068 level 0.0137, step 1, values float32 
    4069 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    4070 level 0.0137, step 1, values float32 
    4071 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    4072 level 0.0137, step 1, values float32 
    4073 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    4074 level 0.0137, step 1, values float32 
    4075 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    4076 level 0.0137, step 1, values float32 
    4077 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    4078 level 0.0137, step 1, values float32 
    4079 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    4080 level 0.0137, step 1, values float32 
    4081 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    4082 level 0.0137, step 1, values float32 
    4083 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    4084 level 0.0137, step 1, values float32 
    4085 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    4086 level 0.0137, step 1, values float32 
    4087 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    4088 level 0.0137, step 1, values float32 
    4089 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    4090 level 0.0137, step 1, values float32 
    4091 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    4092 level 0.0137, step 1, values float32 
    4093 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    4094 level 0.0137, step 1, values float32 
    4095 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    4096 level 0.0137, step 1, values float32 
    4097 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    4098 level 0.0137, step 1, values float32 
    4099 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    4100 level 0.0137, step 1, values float32 
    4101 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    4102 level 0.0137, step 1, values float32 
    4103 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    4104 level 0.0137, step 1, values float32 
    4105 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    4106 level 0.0137, step 1, values float32 
    4107 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    4108 level 0.0137, step 1, values float32 
    4109 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    4110 level 0.0137, step 1, values float32 
    4111 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    4112 level 0.0137, step 1, values float32 
    4113 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    4114 level 0.0137, step 1, values float32 
    4115 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    4116 level 0.0137, step 1, values float32 
    4117 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    4118 level 0.0137, step 1, values float32 
    4119 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    4120 level 0.0137, step 1, values float32 
    4121 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    4122 level 0.0137, step 1, values float32 
    4123 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    4124 0.0137, step 1, values float32 
    4125 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    4126 level 0.0137, step 1, values float32 
    4127 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    4128 at level 0.0137, step 1, values float32 
    4129 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    4130 at level 0.0137, step 1, values float32 
    4131 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    4132 at level 0.0137, step 1, values float32 
    4133 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    4134 at level 0.0137, step 1, values float32 
    4135 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    4136 at level 0.0137, step 1, values float32 
    4137 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    4138 at level 0.0137, step 1, values float32 
    4139 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    4140 at level 0.0137, step 1, values float32 
    4141 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    4142 at level 0.0137, step 1, values float32 
    4143 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    4144 at level 0.0137, step 1, values float32 
    4145 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    4146 at level 0.0137, step 1, values float32 
    4147 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    4148 at level 0.0137, step 1, values float32 
    4149 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    4150 at level 0.0137, step 1, values float32 
    4151 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    4152 at level 0.0137, step 1, values float32 
    4153 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    4154 at level 0.0137, step 1, values float32 
    4155 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    4156 at level 0.0137, step 1, values float32 
    4157 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    4158 at level 0.0137, step 1, values float32 
    4159 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    4160 at level 0.0137, step 1, values float32 
    4161 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    4162 0.0137, step 1, values float32 
    4163 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    4164 level 0.114, step 1, values float32 
    4165 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    4166 at level 0.0137, step 1, values float32 
    4167 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    4168 at level 0.0595, step 1, values float32 
    4169 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    4170 level 0.0137, step 1, values float32 
    4171 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    4172 0.0137, step 1, values float32 
    4173 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    4174 level 0.0137, step 1, values float32 
    4175 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    4176 level 0.0137, step 1, values float32 
    4177 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    4178 0.0137, step 1, values float32 
    4179 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    4180 level 0.0439, step 1, values float32 
    4181 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    4182 0.0137, step 1, values float32 
    4183 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    4184 level 0.0137, step 1, values float32 
    4185 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    4186 level 0.027, step 1, values float32 
    4187 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    4188 step 1, values float32 
    4189 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    4190 level 0.0166, step 1, values float32 
    4191 Log from Tue Sep 9 09:30:49 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4192 © 2016-2024 Regents of the University of California. All rights reserved. 
    4193 
    4194 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4195 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    4196 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Figure-1.cxs"
    4197 
    4198 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    4199 level 0.0137, step 1, values float32 
    4200 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    4201 0.0137, step 1, values float32 
    4202 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    4203 step 1, values float32 
    4204 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    4205 shown at level 0.0137, step 1, values float32 
    4206 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    4207 shown at level 0.0137, step 1, values float32 
    4208 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    4209 shown at level 0.0137, step 1, values float32 
    4210 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    4211 shown at level 0.0137, step 1, values float32 
    4212 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    4213 shown at level 0.0137, step 1, values float32 
    4214 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    4215 shown at level 0.0137, step 1, values float32 
    4216 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    4217 shown at level 0.0137, step 1, values float32 
    4218 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    4219 shown at level 0.0137, step 1, values float32 
    4220 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    4221 shown at level 0.0137, step 1, values float32 
    4222 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    4223 shown at level 0.0137, step 1, values float32 
    4224 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    4225 shown at level 0.0137, step 1, values float32 
    4226 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    4227 shown at level 0.0137, step 1, values float32 
    4228 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    4229 shown at level 0.0137, step 1, values float32 
    4230 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    4231 shown at level 0.0137, step 1, values float32 
    4232 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    4233 shown at level 0.0137, step 1, values float32 
    4234 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    4235 shown at level 0.0137, step 1, values float32 
    4236 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    4237 0.0137, step 1, values float32 
    4238 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    4239 level 0.0137, step 1, values float32 
    4240 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    4241 level 0.0137, step 1, values float32 
    4242 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    4243 level 0.0137, step 1, values float32 
    4244 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    4245 level 0.0137, step 1, values float32 
    4246 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    4247 level 0.0137, step 1, values float32 
    4248 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    4249 level 0.0137, step 1, values float32 
    4250 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    4251 level 0.0137, step 1, values float32 
    4252 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    4253 level 0.0137, step 1, values float32 
    4254 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    4255 level 0.0137, step 1, values float32 
    4256 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    4257 level 0.0137, step 1, values float32 
    4258 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    4259 level 0.0137, step 1, values float32 
    4260 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    4261 level 0.0137, step 1, values float32 
    4262 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    4263 level 0.0137, step 1, values float32 
    4264 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    4265 level 0.0137, step 1, values float32 
    4266 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    4267 level 0.0137, step 1, values float32 
    4268 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    4269 level 0.0137, step 1, values float32 
    4270 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    4271 level 0.0137, step 1, values float32 
    4272 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    4273 level 0.0137, step 1, values float32 
    4274 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    4275 level 0.0137, step 1, values float32 
    4276 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    4277 level 0.0137, step 1, values float32 
    4278 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    4279 level 0.0137, step 1, values float32 
    4280 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    4281 level 0.0137, step 1, values float32 
    4282 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    4283 level 0.0137, step 1, values float32 
    4284 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    4285 level 0.0137, step 1, values float32 
    4286 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    4287 level 0.0137, step 1, values float32 
    4288 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    4289 level 0.0137, step 1, values float32 
    4290 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    4291 level 0.0137, step 1, values float32 
    4292 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    4293 level 0.0137, step 1, values float32 
    4294 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    4295 level 0.0137, step 1, values float32 
    4296 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    4297 level 0.0137, step 1, values float32 
    4298 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    4299 level 0.0137, step 1, values float32 
    4300 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    4301 level 0.0137, step 1, values float32 
    4302 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    4303 level 0.0137, step 1, values float32 
    4304 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    4305 level 0.0137, step 1, values float32 
    4306 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    4307 level 0.0137, step 1, values float32 
    4308 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    4309 0.0137, step 1, values float32 
    4310 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    4311 level 0.0137, step 1, values float32 
    4312 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    4313 at level 0.0137, step 1, values float32 
    4314 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    4315 at level 0.0137, step 1, values float32 
    4316 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    4317 at level 0.0137, step 1, values float32 
    4318 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    4319 at level 0.0137, step 1, values float32 
    4320 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    4321 at level 0.0137, step 1, values float32 
    4322 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    4323 at level 0.0137, step 1, values float32 
    4324 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    4325 at level 0.0137, step 1, values float32 
    4326 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    4327 at level 0.0137, step 1, values float32 
    4328 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    4329 at level 0.0137, step 1, values float32 
    4330 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    4331 at level 0.0137, step 1, values float32 
    4332 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    4333 at level 0.0137, step 1, values float32 
    4334 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    4335 at level 0.0137, step 1, values float32 
    4336 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    4337 at level 0.0137, step 1, values float32 
    4338 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    4339 at level 0.0137, step 1, values float32 
    4340 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    4341 at level 0.0137, step 1, values float32 
    4342 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    4343 at level 0.0137, step 1, values float32 
    4344 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    4345 at level 0.0137, step 1, values float32 
    4346 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    4347 0.0137, step 1, values float32 
    4348 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    4349 level 0.114, step 1, values float32 
    4350 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    4351 at level 0.0137, step 1, values float32 
    4352 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    4353 at level 0.0595, step 1, values float32 
    4354 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    4355 level 0.0137, step 1, values float32 
    4356 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    4357 0.0137, step 1, values float32 
    4358 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    4359 level 0.0137, step 1, values float32 
    4360 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    4361 level 0.0137, step 1, values float32 
    4362 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    4363 0.0137, step 1, values float32 
    4364 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    4365 level 0.0439, step 1, values float32 
    4366 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    4367 0.0137, step 1, values float32 
    4368 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    4369 level 0.0137, step 1, values float32 
    4370 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    4371 level 0.027, step 1, values float32 
    4372 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    4373 step 1, values float32 
    4374 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    4375 level 0.0166, step 1, values float32 
    4376 Log from Fri Jul 25 22:07:01 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4377 © 2016-2024 Regents of the University of California. All rights reserved. 
    4378 
    4379 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4380 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    4381 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Segmentation.cxs"
    4382 
    4383 Opened L0.12-Wild-type_EMD_45507.mrc as #1, grid size 250,250,250, pixel 4.3,
    4384 shown at level 0.0107, step 1, values float32 
    4385 Opened OM.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0107,
    4386 step 1, values float32 
    4387 Opened L0.12-Wild-type_EMD_45507_imasked as #4, grid size 250,250,250, pixel
    4388 4.3, shown at level 0.0107, step 1, values float32 
    4389 Opened Basal_disk.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
    4390 0.0107, step 1, values float32 
    4391 Opened L0_imasked as #6, grid size 250,250,250, pixel 4.3, shown at level
    4392 0.0107, step 1, values float32 
    4393 Opened LP-ring.mrc as #7, grid size 250,250,250, pixel 4.3, shown at level
    4394 0.0107, step 1, values float32 
    4395 Opened L0_imasked_imasked as #8, grid size 250,250,250, pixel 4.3, shown at
    4396 level 0.0107, step 1, values float32 
    4397 Opened PflC.mrc as #9, grid size 250,250,250, pixel 4.3, shown at level
    4398 0.0107, step 1, values float32 
    4399 Opened L0_imasked_imasked_imasked as #10, grid size 250,250,250, pixel 4.3,
    4400 shown at level 0.0107, step 1, values float32 
    4401 Opened PflD.mrc as #11, grid size 250,250,250, pixel 4.3, shown at level
    4402 0.0107, step 1, values float32 
    4403 Opened L0_imasked_imasked_imasked_imasked as #12, grid size 250,250,250, pixel
    4404 4.3, shown at level 0.0107, step 1, values float32 
    4405 Opened L0_imasked_imasked_imasked_imasked_imasked as #13, grid size
    4406 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values float32 
    4407 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked as #14, grid size
    4408 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values float32 
    4409 Opened PilM.mrc as #15, grid size 250,250,250, pixel 4.3, shown at level
    4410 0.0107, step 1, values float32 
    4411 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #16, grid
    4412 size 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values float32 
    4413 Opened Exp_ATP.mrc as #17, grid size 250,250,250, pixel 4.3, shown at level
    4414 0.0107, step 1, values float32 
    4415 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    4416 #18, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values
    4417 float32 
    4418 Opened C-ring-stators.mrc as #19, grid size 250,250,250, pixel 4.3, shown at
    4419 level 0.0107, step 1, values float32 
    4420 Opened
    4421 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    4422 #20, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1, values
    4423 float32 
    4424 Opened C-Vring.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    4425 0.0107, step 1, values float32 
    4426 Opened
    4427 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    4428 as #22, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    4429 values float32 
    4430 Opened
    4431 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    4432 as #23, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    4433 values float32 
    4434 Opened Cage-C17.mrc as #24, grid size 250,250,250, pixel 4.3, shown at level
    4435 0.0107, step 1, values float32 
    4436 Opened Cage-Mono-Good.mrc as #25, grid size 250,250,250, pixel 4.3, shown at
    4437 level 0.0107, step 1, values float32 
    4438 Opened
    4439 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    4440 as #26, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    4441 values float32 
    4442 Opened MotB.mrc as #27, grid size 250,250,250, pixel 4.3, shown at level
    4443 0.0107, step 1, values float32 
    4444 Opened
    4445 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    4446 as #28, grid size 250,250,250, pixel 4.3, shown at level 0.0107, step 1,
    4447 values float32 
    4448 Log from Fri Jul 25 14:31:14 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4449 © 2016-2024 Regents of the University of California. All rights reserved. 
    4450 
    4451 > open /Users/shoichi/Desktop/Docking_models_07232025.cxs format session
    4452 
    4453 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4454 0.00703, step 1, values float32 
    4455 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4456 0.00703, step 1, values float32 
    4457 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    4458 level 0.00136, step 1, values float32 
    4459 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    4460 at level 0.00131, step 1, values float32 
    4461 Opened PflC-polished.mrc as #29, grid size 200,200,200, pixel 2.14, shown at
    4462 level 0.00703, step 1, values float32 
    4463 Opened Cage-polished.mrc as #30, grid size 200,200,200, pixel 2.14, shown at
    4464 level 0.00703, step 1, values float32 
    4465 Opened PflC-polished.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    4466 shown at level 0.00135, step 1, values float32 
    4467 Opened Cage-polished.mrc gaussian as #32, grid size 200,200,200, pixel 2.14,
    4468 shown at level 0.00135, step 1, values float32 
    4469 Log from Wed Jul 23 17:25:02 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4470 © 2016-2024 Regents of the University of California. All rights reserved. 
    4471 
    4472 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4473 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4474 > refinment/PflCD_Docking_model_Fig3/REDO/Docking_models_07232025.cxs"
    4475 
    4476 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4477 0.00703, step 1, values float32 
    4478 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4479 0.00703, step 1, values float32 
    4480 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    4481 level 0.00136, step 1, values float32 
    4482 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    4483 at level 0.00131, step 1, values float32 
    4484 Log from Wed Jul 23 10:13:39 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4485 © 2016-2024 Regents of the University of California. All rights reserved. 
    4486 
    4487 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4488 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4489 > refinment/PflCD_Docking_model_Fig3/REDO/Docking_models.cxs"
    4490 
    4491 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4492 0.00703, step 1, values float32 
    4493 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4494 0.00703, step 1, values float32 
    4495 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    4496 level 0.00136, step 1, values float32 
    4497 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    4498 at level 0.00131, step 1, values float32 
    4499 Log from Tue Jul 22 22:37:33 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4500 © 2016-2024 Regents of the University of California. All rights reserved. 
    4501 
    4502 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4503 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    4504 > review/Updated_Figures/07222025/CJSegment_no-mask/Segment-nomask.cxs"
    4505 
    4506 Opened Rev-CJFlgYPlfAB-2.1A.mrc as #1, grid size 200,200,200, pixel 2.14,
    4507 shown at level 0.00711, step 1, values float32 
    4508 Opened Rev-CJFlgYPlfAB-2.1A_imasked as #3, grid size 200,200,200, pixel 2.14,
    4509 shown at level 0.00711, step 1, values float32 
    4510 Opened Rev-CJFlgYPlfAB-2_imasked as #4, grid size 200,200,200, pixel 2.14,
    4511 shown at level 0.00711, step 1, values float32 
    4512 Opened PflC2.mrc as #5, grid size 200,200,200, pixel 2.14, shown at level
    4513 0.00711, step 1, values float32 
    4514 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #6, grid size 200,200,200, pixel
    4515 2.14, shown at level 0.00711, step 1, values float32 
    4516 Opened PflC1.mrc as #7, grid size 200,200,200, pixel 2.14, shown at level
    4517 0.00711, step 1, values float32 
    4518 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked as #8, grid size 200,200,200,
    4519 pixel 2.14, shown at level 0.00711, step 1, values float32 
    4520 Opened PflD.mrc as #9, grid size 200,200,200, pixel 2.14, shown at level
    4521 0.00711, step 1, values float32 
    4522 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked as #10, grid size
    4523 200,200,200, pixel 2.14, shown at level 0.00711, step 1, values float32 
    4524 Opened MotBpg.mrc as #11, grid size 200,200,200, pixel 2.14, shown at level
    4525 0.00711, step 1, values float32 
    4526 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked as #12, grid
    4527 size 200,200,200, pixel 2.14, shown at level 0.00711, step 1, values float32 
    4528 Opened PflA-FlgY.mrc as #13, grid size 200,200,200, pixel 2.14, shown at level
    4529 0.00711, step 1, values float32 
    4530 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked as
    4531 #14, grid size 200,200,200, pixel 2.14, shown at level 0.00711, step 1, values
    4532 float32 
    4533 Log from Tue Jul 22 14:40:48 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4534 © 2016-2024 Regents of the University of California. All rights reserved. 
    4535 
    4536 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4537 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4538 > refinment/For-PflCD/For_Cage_PflCD.cxs"
    4539 
    4540 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4541 0.0134, step 1, values float32 
    4542 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4543 0.00115, step 1, values float32 
    4544 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    4545 0.00115, step 1, values float32 
    4546 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    4547 level 0.00115, step 1, values float32 
    4548 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    4549 pixel 2.14, shown at level 0.00115, step 1, values float32 
    4550 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    4551 at level 0.00115, step 1, values float32 
    4552 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    4553 2.14, shown at level 0.000387, step 1, values float32 
    4554 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    4555 level 0.0635, step 1, values float32 
    4556 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    4557 0.00124, step 1, values float32 
    4558 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    4559 at level 0.00248, step 1, values float32 
    4560 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    4561 0.00752, step 1, values float32 
    4562 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    4563 0.00101, step 1, values float32 
    4564 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    4565 0.00187, step 1, values float32 
    4566 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    4567 shown at level 0.00187, step 1, values float32 
    4568 Opened Polished-PflCD.mrc as #29, grid size 200,200,200, pixel 2.14, shown at
    4569 level 0.00187, step 1, values float32 
    4570 Opened Polished-PflCD.mrc gaussian as #26, grid size 200,200,200, pixel 2.14,
    4571 shown at level 0.00102, step 1, values float32 
    4572 Opened Polished_Cage2.mrc as #28, grid size 200,200,200, pixel 2.14, shown at
    4573 level 0.00187, step 1, values float32 
    4574 Opened Polished-IM2.mrc as #32, grid size 200,200,200, pixel 2.14, shown at
    4575 level 0.00146, step 1, values float32 
    4576 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    4577 shown at level 0.00184, step 1, values float32 
    4578 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    4579 shown at level 0.000294, step 1, values float32 
    4580 Opened Polished-PflCD_single.mrc as #33, grid size 200,200,200, pixel 2.14,
    4581 shown at level 0.00102, step 1, values float32 
    4582 Opened Single-Cage.mrc as #34, grid size 200,200,200, pixel 2.14, shown at
    4583 level 0.00184, step 1, values float32 
    4584 Opened Single-Cage-arch.mrc as #35, grid size 200,200,200, pixel 2.14, shown
    4585 at level 0.00184, step 1, values float32 
    4586 Opened combination map 10 as #39, grid size 42,39,48, pixel 3.33, shown at
    4587 level 0.0506, step 1, values float32 
    4588 Opened combination map 10 as #42, grid size 38,53,56, pixel 3.33, shown at
    4589 level 0.0458, step 1, values float32 
    4590 Log from Sat Jul 12 20:19:26 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4591 © 2016-2024 Regents of the University of California. All rights reserved. 
    4592 
    4593 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4594 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4595 > refinment/For-PflCD/For_PflCD.cxs"
    4596 
    4597 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4598 0.0134, step 1, values float32 
    4599 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4600 0.00115, step 1, values float32 
    4601 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    4602 0.00115, step 1, values float32 
    4603 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    4604 level 0.00115, step 1, values float32 
    4605 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    4606 pixel 2.14, shown at level 0.00115, step 1, values float32 
    4607 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    4608 at level 0.00115, step 1, values float32 
    4609 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    4610 2.14, shown at level 0.000387, step 1, values float32 
    4611 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    4612 level 0.0635, step 1, values float32 
    4613 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    4614 0.00124, step 1, values float32 
    4615 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    4616 at level 0.00248, step 1, values float32 
    4617 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    4618 0.00752, step 1, values float32 
    4619 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    4620 0.00101, step 1, values float32 
    4621 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    4622 0.00187, step 1, values float32 
    4623 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    4624 shown at level 0.00187, step 1, values float32 
    4625 Opened Polished-PflCD.mrc as #29, grid size 200,200,200, pixel 2.14, shown at
    4626 level 0.00187, step 1, values float32 
    4627 Opened Polished-PflCD.mrc gaussian as #26, grid size 200,200,200, pixel 2.14,
    4628 shown at level 0.00102, step 1, values float32 
    4629 Opened Polished_Cage2.mrc as #28, grid size 200,200,200, pixel 2.14, shown at
    4630 level 0.00187, step 1, values float32 
    4631 Opened Polished-IM2.mrc as #32, grid size 200,200,200, pixel 2.14, shown at
    4632 level 0.00146, step 1, values float32 
    4633 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    4634 shown at level 0.00184, step 1, values float32 
    4635 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    4636 shown at level 0.000294, step 1, values float32 
    4637 Opened Polished-PflCD_single.mrc as #33, grid size 200,200,200, pixel 2.14,
    4638 shown at level 0.00102, step 1, values float32 
    4639 Opened Single-Cage.mrc as #34, grid size 200,200,200, pixel 2.14, shown at
    4640 level 0.00184, step 1, values float32 
    4641 Opened Single-Cage-arch.mrc as #35, grid size 200,200,200, pixel 2.14, shown
    4642 at level 0.00184, step 1, values float32 
    4643 Log from Fri Jul 11 22:22:46 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4644 © 2016-2024 Regents of the University of California. All rights reserved. 
    4645 
    4646 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4647 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4648 > refinment/For-PflCD/PflCD.cxs"
    4649 
    4650 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4651 0.0134, step 1, values float32 
    4652 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4653 0.00115, step 1, values float32 
    4654 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    4655 0.00115, step 1, values float32 
    4656 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    4657 level 0.00115, step 1, values float32 
    4658 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    4659 pixel 2.14, shown at level 0.00115, step 1, values float32 
    4660 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    4661 at level 0.00115, step 1, values float32 
    4662 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    4663 2.14, shown at level 0.000387, step 1, values float32 
    4664 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    4665 level 0.0635, step 1, values float32 
    4666 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    4667 0.00124, step 1, values float32 
    4668 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    4669 at level 0.00248, step 1, values float32 
    4670 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    4671 0.00752, step 1, values float32 
    4672 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    4673 0.00101, step 1, values float32 
    4674 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    4675 0.00187, step 1, values float32 
    4676 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    4677 shown at level 0.00187, step 1, values float32 
    4678 Log from Fri Jul 11 20:48:14 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4679 © 2016-2024 Regents of the University of California. All rights reserved. 
    4680 
    4681 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4682 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4683 > refinment/For-PflCD/For-PflD_PflC.cxs"
    4684 
    4685 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4686 0.0134, step 1, values float32 
    4687 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4688 0.00115, step 1, values float32 
    4689 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    4690 0.00115, step 1, values float32 
    4691 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    4692 level 0.00115, step 1, values float32 
    4693 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    4694 pixel 2.14, shown at level 0.00115, step 1, values float32 
    4695 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    4696 at level 0.00115, step 1, values float32 
    4697 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    4698 2.14, shown at level 0.000387, step 1, values float32 
    4699 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    4700 level 0.0635, step 1, values float32 
    4701 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    4702 0.00124, step 1, values float32 
    4703 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    4704 at level 0.00248, step 1, values float32 
    4705 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    4706 0.00752, step 1, values float32 
    4707 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    4708 0.00101, step 1, values float32 
    4709 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    4710 0.00187, step 1, values float32 
    4711 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    4712 shown at level 0.00187, step 1, values float32 
    4713 Log from Fri Jul 11 17:08:26 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4714 © 2016-2024 Regents of the University of California. All rights reserved. 
    4715 
    4716 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4717 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4718 > refinment/For-Chimera-PflAB/Resegment/Part3/Fitting_PflABY-JMB_07112025.cxs"
    4719 
    4720 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4721 0.0134, step 1, values float32 
    4722 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4723 0.00115, step 1, values float32 
    4724 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    4725 0.00115, step 1, values float32 
    4726 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    4727 level 0.00115, step 1, values float32 
    4728 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    4729 pixel 2.14, shown at level 0.00115, step 1, values float32 
    4730 Opened Single-Spoke-ring.mrc as #14, grid size 200,200,200, pixel 2.14, shown
    4731 at level 0.00115, step 1, values float32 
    4732 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    4733 2.14, shown at level 0.000387, step 1, values float32 
    4734 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    4735 level 0.0635, step 1, values float32 
    4736 Log from Fri Jul 11 12:46:52 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4737 © 2016-2024 Regents of the University of California. All rights reserved. 
    4738 
    4739 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4740 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    4741 > refinment/For-Chimera-PflAB/Resegment/Docking_Jack_model.cxs"
    4742 
    4743 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    4744 0.0134, step 1, values float32 
    4745 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    4746 0.00115, step 1, values float32 
    4747 Log from Thu Jul 10 22:06:04 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    4748 © 2016-2024 Regents of the University of California. All rights reserved. 
    4749 
    4750 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    4751 > files/C.jejuni/2nd_paper/For-2nd-manuscript/Start_Aug_2024/Local-ref-
    4752 > PflAB/Develop-model-Figure.cxs"
    4753 
    4754 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4755 level 0.0246, step 1, values float32 
    4756 Opened Cyt-components.mrc as #1.2, grid size 220,250,200, pixel
    4757 2.15,2.15,2.15, shown at level 0.0159, step 1, values float32 
    4758 Opened FliL.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4759 level 0.0029, step 1, values float32 
    4760 Opened PflB-cage.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4761 shown at level 0.0029, step 1, values float32 
    4762 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4763 level 0.0029, step 1, values float32 
    4764 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4765 shown at level 0.0029, step 1, values float32 
    4766 Opened MS-ring.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    4767 at level 0.0029, step 1, values float32 
    4768 Opened Artifact3.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4769 shown at level 0.0029, step 1, values float32 
    4770 Opened MotBpg.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    4771 at level 0.0029, step 1, values float32 
    4772 Opened Artifacts2.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4773 shown at level 0.0029, step 1, values float32 
    4774 Opened PflC-PflD.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4775 shown at level 0.0029, step 1, values float32 
    4776 Opened Basal-Disk.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4777 shown at level 0.0029, step 1, values float32 
    4778 Opened OM.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4779 level 0.0029, step 1, values float32 
    4780 Opened LP-ring.mrc as #1.14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4781 shown at level 0.0029, step 1, values float32 
    4782 Opened Artifact1.mrc as #1.15, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4783 shown at level 0.0029, step 1, values float32 
    4784 Opened Rod.mrc as #1.16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4785 level 0.0029, step 1, values float32 
    4786 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4787 shown at level 0.0029, step 1, values float32 
    4788 Opened FliL.mrc gaussian as #4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4789 shown at level 0.0029, step 1, values float32 
    4790 Opened PflB-cage.mrc gaussian as #5, grid size 220,250,200, pixel
    4791 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4792 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4793 shown at level 0.0029, step 1, values float32 
    4794 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    4795 2.15,2.15,2.15, shown at level 0.0216, step 1, values float32 
    4796 Opened MS-ring.mrc gaussian as #8, grid size 220,250,200, pixel
    4797 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4798 Opened MotBpg.mrc gaussian as #10, grid size 220,250,200, pixel
    4799 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4800 Opened PflC-PflD.mrc gaussian as #12, grid size 220,250,200, pixel
    4801 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4802 Opened Basal-Disk.mrc gaussian as #13, grid size 220,250,200, pixel
    4803 2.15,2.15,2.15, shown at level 0.015, step 1, values float32 
    4804 Opened LP-ring.mrc gaussian as #15, grid size 220,250,200, pixel
    4805 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4806 Opened Rod.mrc gaussian as #17, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4807 shown at level 0.0029, step 1, values float32 
    4808 Opened 4x-FlgY-PflA.mrc as #23, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4809 shown at level 0.0029, step 1, values float32 
    4810 Opened 4x-FlgY-PflA.mrc gaussian as #32, grid size 220,250,200, pixel
    4811 2.15,2.15,2.15, shown at level 0.00608, step 1, values float32 
    4812 Opened IM.mrc gaussian as #24, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4813 shown at level 0.00625, step 1, values float32 
    4814 Opened 3xMotBpg.mrc gaussian as #21, grid size 220,250,200, pixel
    4815 2.15,2.15,2.15, shown at level 0.000626, step 1, values float32 
    4816 Log from Sat Aug 24 21:36:37 2024UCSF ChimeraX version: 1.8 (2024-06-10) 
    4817 © 2016-2024 Regents of the University of California. All rights reserved. 
    4818 
    4819 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4820 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    4821 
    4822 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4823 level 0.0246, step 1, values float32 
    4824 Opened Cyt-components.mrc as #1.2, grid size 220,250,200, pixel
    4825 2.15,2.15,2.15, shown at level 0.0159, step 1, values float32 
    4826 Opened FliL.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4827 level 0.0029, step 1, values float32 
    4828 Opened PflB-cage.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4829 shown at level 0.0029, step 1, values float32 
    4830 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4831 level 0.0029, step 1, values float32 
    4832 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4833 shown at level 0.0029, step 1, values float32 
    4834 Opened MS-ring.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    4835 at level 0.0029, step 1, values float32 
    4836 Opened Artifact3.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4837 shown at level 0.0029, step 1, values float32 
    4838 Opened MotBpg.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    4839 at level 0.0029, step 1, values float32 
    4840 Opened Artifacts2.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4841 shown at level 0.0029, step 1, values float32 
    4842 Opened PflC-PflD.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4843 shown at level 0.0029, step 1, values float32 
    4844 Opened Basal-Disk.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4845 shown at level 0.0029, step 1, values float32 
    4846 Opened OM.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4847 level 0.0029, step 1, values float32 
    4848 Opened LP-ring.mrc as #1.14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4849 shown at level 0.0029, step 1, values float32 
    4850 Opened Artifact1.mrc as #1.15, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4851 shown at level 0.0029, step 1, values float32 
    4852 Opened Rod.mrc as #1.16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4853 level 0.0029, step 1, values float32 
    4854 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4855 shown at level 0.0029, step 1, values float32 
    4856 Opened FliL.mrc gaussian as #4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4857 shown at level 0.0029, step 1, values float32 
    4858 Opened PflB-cage.mrc gaussian as #5, grid size 220,250,200, pixel
    4859 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4860 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4861 shown at level 0.0029, step 1, values float32 
    4862 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    4863 2.15,2.15,2.15, shown at level 0.0216, step 1, values float32 
    4864 Opened MS-ring.mrc gaussian as #8, grid size 220,250,200, pixel
    4865 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4866 Opened MotBpg.mrc gaussian as #10, grid size 220,250,200, pixel
    4867 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4868 Opened PflC-PflD.mrc gaussian as #12, grid size 220,250,200, pixel
    4869 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4870 Opened Basal-Disk.mrc gaussian as #13, grid size 220,250,200, pixel
    4871 2.15,2.15,2.15, shown at level 0.015, step 1, values float32 
    4872 Opened LP-ring.mrc gaussian as #15, grid size 220,250,200, pixel
    4873 2.15,2.15,2.15, shown at level 0.0029, step 1, values float32 
    4874 Opened Rod.mrc gaussian as #17, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4875 shown at level 0.0029, step 1, values float32 
    4876 Log from Sat Aug 24 18:41:04 2024 Startup Messages 
    4877 --- 
    4878 note | available bundle cache has not been initialized yet 
    4879  
    4880 UCSF ChimeraX version: 1.8 (2024-06-10) 
    4881 © 2016-2024 Regents of the University of California. All rights reserved. 
    4882 How to cite UCSF ChimeraX 
    4883 
    4884 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4885 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/IM.mrc
    4886 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4887 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    4888 > chimera/cyc3/Segments/Artifacts-cyt.mrc
    4889 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4890 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/PflB-
    4891 > cage.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4892 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    4893 > chimera/cyc3/Segments/FliLrings.mrc
    4894 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4895 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/Cage.mrc
    4896 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4897 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/FlgY-
    4898 > PflA.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4899 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    4900 > chimera/cyc3/Segments/MotBpg.mrc
    4901 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4902 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/MS-
    4903 > ring.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4904 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    4905 > chimera/cyc3/Segments/Artifacts.mrc
    4906 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4907 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/Rod.mrc
    4908 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4909 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/LP-
    4910 > ring.mrc /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4911 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-
    4912 > chimera/cyc3/Segments/PflCD.mrc
    4913 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    4914 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Segments/Basal-
    4915 > disk.mrc
    4916 
    4917 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4918 level 0.0246, step 1, values float32 
    4919 Opened Artifacts-cyt.mrc as #1.2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4920 shown at level 0.0215, step 1, values float32 
    4921 Opened PflB-cage.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4922 shown at level 0.0223, step 1, values float32 
    4923 Opened FliLrings.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4924 shown at level 0.0214, step 1, values float32 
    4925 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4926 level 0.0213, step 1, values float32 
    4927 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4928 shown at level 0.0274, step 1, values float32 
    4929 Opened MotBpg.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    4930 at level 0.0214, step 1, values float32 
    4931 Opened MS-ring.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    4932 at level 0.0215, step 1, values float32 
    4933 Opened Artifacts.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4934 shown at level 0.0212, step 1, values float32 
    4935 Opened Rod.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    4936 level 0.0213, step 1, values float32 
    4937 Opened LP-ring.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4938 shown at level 0.0218, step 1, values float32 
    4939 Opened PflCD.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    4940 at level 0.0454, step 1, values float32 
    4941 Opened Basal-disk.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4942 shown at level 0.0247, step 1, values float32 
    4943 
    4944 > select add #1.2
    4945 
    4946 2 models selected 
    4947 
    4948 > select subtract #1.2
    4949 
    4950 Nothing selected 
    4951 
    4952 > hide #!1.2 models
    4953 
    4954 > hide #!1.9 models
    4955 
    4956 > volume #1.1 level 0.02218
    4957 
    4958 > volume #1.2 level 0.0222
    4959 
    4960 > volume #1.3 level 0.0222
    4961 
    4962 > volume #1.4 level 0.0222
    4963 
    4964 > volume #1.5 level 0.0222
    4965 
    4966 > volume #1.6 level 0.0222
    4967 
    4968 > volume #1.7 level 0.0222
    4969 
    4970 > volume #1.8 level 0.0222
    4971 
    4972 > volume #1.9 level 0.0222
    4973 
    4974 > volume #1.10 level 0.0222
    4975 
    4976 > volume #1.13 level 0.0222
    4977 
    4978 > volume gaussian #1 sDev 3
    4979 
    4980 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4981 shown at step 1, values float32 
    4982 Opened Artifacts-cyt.mrc gaussian as #3, grid size 220,250,200, pixel
    4983 2.15,2.15,2.15, shown at step 1, values float32 
    4984 Opened PflB-cage.mrc gaussian as #4, grid size 220,250,200, pixel
    4985 2.15,2.15,2.15, shown at step 1, values float32 
    4986 Opened FliLrings.mrc gaussian as #5, grid size 220,250,200, pixel
    4987 2.15,2.15,2.15, shown at step 1, values float32 
    4988 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4989 shown at step 1, values float32 
    4990 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    4991 2.15,2.15,2.15, shown at step 1, values float32 
    4992 Opened MotBpg.mrc gaussian as #8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4993 shown at step 1, values float32 
    4994 Opened MS-ring.mrc gaussian as #9, grid size 220,250,200, pixel
    4995 2.15,2.15,2.15, shown at step 1, values float32 
    4996 Opened Artifacts.mrc gaussian as #10, grid size 220,250,200, pixel
    4997 2.15,2.15,2.15, shown at step 1, values float32 
    4998 Opened Rod.mrc gaussian as #11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    4999 shown at step 1, values float32 
    5000 Opened LP-ring.mrc gaussian as #12, grid size 220,250,200, pixel
    5001 2.15,2.15,2.15, shown at step 1, values float32 
    5002 Opened PflCD.mrc gaussian as #13, grid size 220,250,200, pixel 2.15,2.15,2.15,
    5003 shown at step 1, values float32 
    5004 Opened Basal-disk.mrc gaussian as #14, grid size 220,250,200, pixel
    5005 2.15,2.15,2.15, shown at step 1, values float32 
    5006 
    5007 Cell requested for row 1 is out of bounds for table with 27 rows! Resizing
    5008 table model. 
    5009 
    5010 > close #2-14
    5011 
    5012 > show #!1.1 models
    5013 
    5014 > show #!1.2 models
    5015 
    5016 > show #!1.3 models
    5017 
    5018 > show #!1.4 models
    5019 
    5020 > show #!1.6 models
    5021 
    5022 > show #!1.7 models
    5023 
    5024 > show #!1.5 models
    5025 
    5026 > volume gaussian #1 sDev 1.5
    5027 
    5028 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    5029 shown at step 1, values float32 
    5030 Opened Artifacts-cyt.mrc gaussian as #3, grid size 220,250,200, pixel
    5031 2.15,2.15,2.15, shown at step 1, values float32 
    5032 Opened PflB-cage.mrc gaussian as #4, grid size 220,250,200, pixel
    5033 2.15,2.15,2.15, shown at step 1, values float32 
    5034 Opened FliLrings.mrc gaussian as #5, grid size 220,250,200, pixel
    5035 2.15,2.15,2.15, shown at step 1, values float32 
    5036 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    5037 shown at step 1, values float32 
    5038 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    5039 2.15,2.15,2.15, shown at step 1, values float32 
    5040 Opened MotBpg.mrc gaussian as #8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    5041 shown at step 1, values float32 
    5042 Opened MS-ring.mrc gaussian as #9, grid size 220,250,200, pixel
    5043 2.15,2.15,2.15, shown at step 1, values float32 
    5044 Opened Artifacts.mrc gaussian as #10, grid size 220,250,200, pixel
    5045 2.15,2.15,2.15, shown at step 1, values float32 
    5046 Opened Rod.mrc gaussian as #11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    5047 shown at step 1, values float32 
    5048 Opened LP-ring.mrc gaussian as #12, grid size 220,250,200, pixel
    5049 2.15,2.15,2.15, shown at step 1, values float32 
    5050 Opened PflCD.mrc gaussian as #13, grid size 220,250,200, pixel 2.15,2.15,2.15,
    5051 shown at step 1, values float32 
    5052 Opened Basal-disk.mrc gaussian as #14, grid size 220,250,200, pixel
    5053 2.15,2.15,2.15, shown at step 1, values float32 
    5054 
    5055 Window position QRect(1940,817 575x728) outside any known screen, using
    5056 primary screen 
    5057 
    5058 > hide #!3 models
    5059 
    5060 > hide #!4 models
    5061 
    5062 > hide #!5 models
    5063 
    5064 > hide #!6 models
    5065 
    5066 > hide #!7 models
    5067 
    5068 > hide #!8 models
    5069 
    5070 > hide #!9 models
    5071 
    5072 > hide #!10 models
    5073 
    5074 > hide #!11 models
    5075 
    5076 > hide #!12 models
    5077 
    5078 > hide #!13 models
    5079 
    5080 > hide #!14 models
    5081 
    5082 > surface dust #2 size 12.6
    5083 
    5084 > show #!3 models
    5085 
    5086 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    5087 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/Test-model-local.cxs
    5088 > includeMaps true
    5089 
    5090 > close session
    5091 
    5092 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    5093 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Rev-CjpflAB-
    5094 > mask-L0.2.mrc
    5095 
    5096 Opened Rev-CjpflAB-mask-L0.2.mrc as #1, grid size 220,250,200, pixel
    5097 2.15,2.15,2.15, shown at level 0.0603, step 1, values float32 
    5098 
    5099 > volume #1 level 0.01305
    5100 
    5101 > volume #1 level 0.009239
    5102 
    5103 > volume #1 level 0.007334
    5104 
    5105 > volume #1 level 0.003524
    5106 
    5107 > ui tool show "Segment Map"
    5108 
    5109 > volume #1 level 0.003143
    5110 
    5111 Segmenting Rev-CjpflAB-mask-L0.2.mrc, density threshold 0.003143 
    5112 Showing 581 region surfaces 
    5113 31797 watershed regions, grouped to 581 regions 
    5114 Showing Rev-CjpflAB-mask-L0.2.seg - 581 regions, 581 surfaces 
    5115 
    5116 > select #2.419
    5117 
    5118 1 model selected 
    5119 
    5120 > select add #2.456
    5121 
    5122 2 models selected 
    5123 
    5124 > select add #2.18
    5125 
    5126 3 models selected 
    5127 
    5128 > select add #2.378
    5129 
    5130 4 models selected 
    5131 
    5132 > hide #!1 models
    5133 
    5134 > select add #2.439
    5135 
    5136 5 models selected 
    5137 
    5138 > select add #2.1
    5139 
    5140 6 models selected 
    5141 
    5142 > select add #2.16
    5143 
    5144 7 models selected 
    5145 
    5146 > select add #2.29
    5147 
    5148 8 models selected 
    5149 
    5150 > select add #2.404
    5151 
    5152 9 models selected 
    5153 Grouped 9 regions 
    5154 
    5155 > select #2.56
    5156 
    5157 1 model selected 
    5158 Ungrouped to 2 regions 
    5159 
    5160 > select #2.18
    5161 
    5162 1 model selected 
    5163 Ungrouped to 3 regions 
    5164 
    5165 > select #2.29
    5166 
    5167 1 model selected 
    5168 
    5169 > select clear
    5170 
    5171 > select #2.29
    5172 
    5173 1 model selected 
    5174 Showing 576 region surfaces 
    5175 
    5176 > select add #2.1
    5177 
    5178 2 models selected 
    5179 
    5180 The cached device pixel ratio value was stale on window expose. Please file a
    5181 QTBUG which explains how to reproduce. 
    5182 
    5183 Grouped 2 regions 
    5184 
    5185 > select #2.87
    5186 
    5187 1 model selected 
    5188 
    5189 > select clear
    5190 
    5191 > select #2.286
    5192 
    5193 1 model selected 
    5194 
    5195 > select #2.87
    5196 
    5197 1 model selected 
    5198 Ungrouped to 10 regions 
    5199 
    5200 > select clear
    5201 
    5202 > select #2.419
    5203 
    5204 1 model selected 
    5205 
    5206 > select add #2.1
    5207 
    5208 2 models selected 
    5209 Opened Rev-CjpflAB-mask-L0.2_imasked as #3, grid size 220,250,200, pixel
    5210 2.15,2.15,2.15, shown at step 1, values float32 
    5211 
    5212 The cached device pixel ratio value was stale on window expose. Please file a
    5213 QTBUG which explains how to reproduce. 
    5214 
    5215 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    5216 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    5217 > segment_Aug2420204/Rod.mrc models #3
    5218 
    5219 Opened Rev-CjpflAB-mask-L0.2_imasked as #4, grid size 220,250,200, pixel
    5220 2.15,2.15,2.15, shown at step 1, values float32 
    5221 
    5222 The cached device pixel ratio value was stale on window expose. Please file a
    5223 QTBUG which explains how to reproduce. 
    5224 
    5225 Segmenting Rev-CjpflAB-mask-L0.2_imasked, density threshold 0.003143 
    5226 Showing 572 region surfaces 
    5227 30650 watershed regions, grouped to 572 regions 
    5228 Showing Rev-CjpflAB-mask-L0.seg - 572 regions, 572 surfaces 
    5229 
    5230 > hide #!4 models
    5231 
    5232 > hide #!3 models
    5233 
    5234 > show #!3 models
    5235 
    5236 > select add #2.13
    5237 
    5238 1 model selected 
    5239 
    5240 > select add #2.5
    5241 
    5242 2 models selected 
    5243 
    5244 > select add #2.3
    5245 
    5246 3 models selected 
    5247 
    5248 > select add #2.27
    5249 
    5250 4 models selected 
    5251 
    5252 > select clear
    5253 
    5254 > select #2.22
    5255 
    5256 1 model selected 
    5257 
    5258 > select add #2.274
    5259 
    5260 2 models selected 
    5261 
    5262 > select add #2.420
    5263 
    5264 3 models selected 
    5265 
    5266 > select add #2.350
    5267 
    5268 4 models selected 
    5269 
    5270 > select add #2.341
    5271 
    5272 5 models selected 
    5273 
    5274 > select add #2.419
    5275 
    5276 6 models selected 
    5277 
    5278 > select add #2.186
    5279 
    5280 7 models selected 
    5281 
    5282 > select add #2.323
    5283 
    5284 8 models selected 
    5285 
    5286 > select add #2.162
    5287 
    5288 9 models selected 
    5289 
    5290 > select add #2.450
    5291 
    5292 10 models selected 
    5293 
    5294 > select add #2.79
    5295 
    5296 11 models selected 
    5297 
    5298 > select add #2.356
    5299 
    5300 12 models selected 
    5301 Grouped 12 regions 
    5302 
    5303 > hide #!3 models
    5304 
    5305 Opened Rev-CjpflAB-mask-L0_imasked as #5, grid size 220,250,200, pixel
    5306 2.15,2.15,2.15, shown at step 1, values float32 
    5307 
    5308 The cached device pixel ratio value was stale on window expose. Please file a
    5309 QTBUG which explains how to reproduce. 
    5310 
    5311 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    5312 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    5313 > segment_Aug2420204/Artifact1.mrc models #5
    5314 
    5315 Opened Rev-CjpflAB-mask-L0_imasked as #6, grid size 220,250,200, pixel
    5316 2.15,2.15,2.15, shown at step 1, values float32 
    5317 Segmenting Rev-CjpflAB-mask-L0_imasked, density threshold 0.003143 
    5318 Showing 559 region surfaces 
    5319 29950 watershed regions, grouped to 559 regions 
    5320 Showing Rev-CjpflAB-mask-L0_imasked.seg - 559 regions, 559 surfaces 
    5321 
    5322 > select #2.5
    5323 
    5324 1 model selected 
    5325 
    5326 > select add #2.92
    5327 
    5328 2 models selected 
    5329 
    5330 > select add #2.138
    5331 
    5332 3 models selected 
    5333 
    5334 > select add #2.3
    5335 
    5336 4 models selected 
    5337 
    5338 > select add #2.26
    5339 
    5340 5 models selected 
    5341 
    5342 > select add #2.65
    5343 
    5344 6 models selected 
    5345 
    5346 > select add #2.76
    5347 
    5348 7 models selected 
    5349 
    5350 > select add #2.272
    5351 
    5352 8 models selected 
    5353 
    5354 > select add #2.13
    5355 
    5356 9 models selected 
    5357 
    5358 > hide #!5 models
    5359 
    5360 > hide #!6 models
    5361 
    5362 Grouped 9 regions 
    5363 Opened Rev-CjpflAB-mask-L0_imasked_imasked as #7, grid size 220,250,200, pixel
    5364 2.15,2.15,2.15, shown at step 1, values float32 
    5365 
    5366 The cached device pixel ratio value was stale on window expose. Please file a
    5367 QTBUG which explains how to reproduce. 
    5368 
    5369 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    5370 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    5371 > segment_Aug2420204/LP-ring.mrc models #7
    5372 
    5373 Opened Rev-CjpflAB-mask-L0_imasked_imasked as #8, grid size 220,250,200, pixel
    5374 2.15,2.15,2.15, shown at step 1, values float32 
    5375 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked, density threshold 0.003143 
    5376 Showing 550 region surfaces 
    5377 28997 watershed regions, grouped to 550 regions 
    5378 Showing Rev-CjpflAB-mask-L0_imasked_imasked.seg - 550 regions, 550 surfaces 
    5379 
    5380 > hide #!7 models
    5381 
    5382 > hide #!8 models
    5383 
    5384 > select #2.31
    5385 
    5386 1 model selected 
    5387 
    5388 > select add #2.422
    5389 
    5390 2 models selected 
    5391 
    5392 > select add #2.162
    5393 
    5394 3 models selected 
    5395 
    5396 > select add #2.149
    5397 
    5398 4 models selected 
    5399 
    5400 > select add #2.307
    5401 
    5402 5 models selected 
    5403 
    5404 > select add #2.358
    5405 
    5406 6 models selected 
    5407 
    5408 > select add #2.43
    5409 
    5410 7 models selected 
    5411 
    5412 > select add #2.360
    5413 
    5414 8 models selected 
    5415 
    5416 > select add #2.323
    5417 
    5418 9 models selected 
    5419 
    5420 > select add #2.401
    5421 
    5422 10 models selected 
    5423 
    5424 > select add #2.467
    5425 
    5426 11 models selected 
    5427 
    5428 > select add #2.409
    5429 
    5430 12 models selected 
    5431 
    5432 > select add #2.42
    5433 
    5434 13 models selected 
    5435 
    5436 > select add #2.429
    5437 
    5438 14 models selected 
    5439 
    5440 > select add #2.475
    5441 
    5442 15 models selected 
    5443 
    5444 > select subtract #2.42
    5445 
    5446 14 models selected 
    5447 
    5448 > select add #2.443
    5449 
    5450 15 models selected 
    5451 
    5452 > select add #2.392
    5453 
    5454 16 models selected 
    5455 
    5456 > select add #2.320
    5457 
    5458 17 models selected 
    5459 
    5460 > select add #2.396
    5461 
    5462 18 models selected 
    5463 
    5464 > select add #2.479
    5465 
    5466 19 models selected 
    5467 
    5468 > select add #2.349
    5469 
    5470 20 models selected 
    5471 
    5472 > select add #2.329
    5473 
    5474 21 models selected 
    5475 
    5476 > select add #2.460
    5477 
    5478 22 models selected 
    5479 
    5480 > select add #2.435
    5481 
    5482 23 models selected 
    5483 
    5484 > select subtract #2.435
    5485 
    5486 22 models selected 
    5487 
    5488 > select add #2.421
    5489 
    5490 23 models selected 
    5491 
    5492 > select add #2.456
    5493 
    5494 24 models selected 
    5495 
    5496 > select add #2.435
    5497 
    5498 25 models selected 
    5499 
    5500 > select add #2.457
    5501 
    5502 26 models selected 
    5503 
    5504 > select add #2.465
    5505 
    5506 27 models selected 
    5507 
    5508 > select add #2.445
    5509 
    5510 28 models selected 
    5511 
    5512 > select add #2.373
    5513 
    5514 29 models selected 
    5515 
    5516 > select add #2.322
    5517 
    5518 30 models selected 
    5519 
    5520 > select add #2.351
    5521 
    5522 31 models selected 
    5523 
    5524 > select add #2.372
    5525 
    5526 32 models selected 
    5527 
    5528 > select add #2.464
    5529 
    5530 33 models selected 
    5531 Grouped 33 regions 
    5532 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked as #9, grid size
    5533 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    5534 
    5535 The cached device pixel ratio value was stale on window expose. Please file a
    5536 QTBUG which explains how to reproduce. 
    5537 
    5538 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    5539 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    5540 > segment_Aug2420204/OM.mrc models #9
    5541 
    5542 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked as #10, grid size
    5543 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    5544 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked_imasked, density threshold
    5545 0.003143 
    5546 Showing 517 region surfaces 
    5547 27609 watershed regions, grouped to 517 regions 
    5548 Showing Rev-CjpflAB-mask-L0_imasked_imasked_imasked.seg - 517 regions, 517
    5549 surfaces 
    5550 
    5551 > hide #!9 models
    5552 
    5553 > select #2.342
    5554 
    5555 1 model selected 
    5556 
    5557 > select add #2.121
    5558 
    5559 2 models selected 
    5560 
    5561 > select add #2.169
    5562 
    5563 3 models selected 
    5564 
    5565 > select add #2.106
    5566 
    5567 4 models selected 
    5568 
    5569 > select add #2.181
    5570 
    5571 5 models selected 
    5572 
    5573 > select add #2.127
    5574 
    5575 6 models selected 
    5576 
    5577 > select add #2.149
    5578 
    5579 7 models selected 
    5580 
    5581 > select add #2.128
    5582 
    5583 8 models selected 
    5584 
    5585 > select add #2.183
    5586 
    5587 9 models selected 
    5588 
    5589 > select add #2.32
    5590 
    5591 10 models selected 
    5592 
    5593 > select add #2.70
    5594 
    5595 11 models selected 
    5596 
    5597 > select add #2.86
    5598 
    5599 12 models selected 
    5600 
    5601 > select add #2.66
    5602 
    5603 13 models selected 
    5604 
    5605 > select add #2.297
    5606 
    5607 14 models selected 
    5608 
    5609 > select add #2.423
    5610 
    5611 15 models selected 
    5612 
    5613 > select add #2.326
    5614 
    5615 16 models selected 
    5616 
    5617 > select add #2.46
    5618 
    5619 17 models selected 
    5620 
    5621 > select add #2.12
    5622 
    5623 18 models selected 
    5624 
    5625 > select add #2.74
    5626 
    5627 19 models selected 
    5628 
    5629 > select add #2.131
    5630 
    5631 20 models selected 
    5632 
    5633 > select add #2.250
    5634 
    5635 21 models selected 
    5636 
    5637 > select add #2.294
    5638 
    5639 22 models selected 
    5640 
    5641 > select add #2.327
    5642 
    5643 23 models selected 
    5644 
    5645 > select add #2.284
    5646 
    5647 24 models selected 
    5648 
    5649 > select subtract #2.284
    5650 
    5651 23 models selected 
    5652 
    5653 > select add #2.133
    5654 
    5655 24 models selected 
    5656 
    5657 > select add #2.270
    5658 
    5659 25 models selected 
    5660 
    5661 > select add #2.166
    5662 
    5663 26 models selected 
    5664 
    5665 > select add #2.258
    5666 
    5667 27 models selected 
    5668 
    5669 > select add #2.134
    5670 
    5671 28 models selected 
    5672 
    5673 > select add #2.213
    5674 
    5675 29 models selected 
    5676 
    5677 > select add #2.220
    5678 
    5679 30 models selected 
    5680 
    5681 > select add #2.276
    5682 
    5683 31 models selected 
    5684 
    5685 > select add #2.151
    5686 
    5687 32 models selected 
    5688 
    5689 > select add #2.41
    5690 
    5691 33 models selected 
    5692 
    5693 > select add #2.374
    5694 
    5695 34 models selected 
    5696 
    5697 > select add #2.345
    5698 
    5699 35 models selected 
    5700 
    5701 > select add #2.144
    5702 
    5703 36 models selected 
    5704 
    5705 > select add #2.79
    5706 
    5707 37 models selected 
    5708 
    5709 > select add #2.252
    5710 
    5711 38 models selected 
    5712 
    5713 > select add #2.204
    5714 
    5715 39 models selected 
    5716 
    5717 > select add #2.191
    5718 
    5719 40 models selected 
    5720 
    5721 > select add #2.145
    5722 
    5723 41 models selected 
    5724 
    5725 > select add #2.148
    5726 
    5727 42 models selected 
    5728 
    5729 > select add #2.174
    5730 
    5731 43 models selected 
    5732 
    5733 > select add #2.308
    5734 
    5735 44 models selected 
    5736 
    5737 > select add #2.214
    5738 
    5739 45 models selected 
    5740 
    5741 > select add #2.358
    5742 
    5743 46 models selected 
    5744 
    5745 > select add #2.373
    5746 
    5747 47 models selected 
    5748 
    5749 > select add #2.77
    5750 
    5751 48 models selected 
    5752 
    5753 > select add #2.124
    5754 
    5755 49 models selected 
    5756 
    5757 > select add #2.241
    5758 
    5759 50 models selected 
    5760 
    5761 > select add #2.85
    5762 
    5763 51 models selected 
    5764 
    5765 > select add #2.24
    5766 
    5767 52 models selected 
    5768 
    5769 > select add #2.284
    5770 
    5771 53 models selected 
    5772 
    5773 > select add #2.352
    5774 
    5775 54 models selected 
    5776 
    5777 > select add #2.217
    5778 
    5779 55 models selected 
    5780 
    5781 > select add #2.109
    5782 
    5783 56 models selected 
    5784 
    5785 > select add #2.279
    5786 
    5787 57 models selected 
    5788 
    5789 > select add #2.378
    5790 
    5791 58 models selected 
    5792 
    5793 > select add #2.139
    5794 
    5795 59 models selected 
    5796 
    5797 > select add #2.397
    5798 
    5799 60 models selected 
    5800 
    5801 > select add #2.118
    5802 
    5803 61 models selected 
    5804 
    5805 > select add #2.398
    5806 
    5807 62 models selected 
    5808 
    5809 > select add #2.299
    5810 
    5811 63 models selected 
    5812 
    5813 > select add #2.436
    5814 
    5815 64 models selected 
    5816 
    5817 > select add #2.371
    5818 
    5819 65 models selected 
    5820 
    5821 > select add #2.360
    5822 
    5823 66 models selected 
    5824 
    5825 > select add #2.200
    5826 
    5827 67 models selected 
    5828 
    5829 > select add #2.43
    5830 
    5831 68 models selected 
    5832 
    5833 > select add #2.369
    5834 
    5835 69 models selected 
    5836 
    5837 > select add #2.97
    5838 
    5839 70 models selected 
    5840 
    5841 > select add #2.404
    5842 
    5843 71 models selected 
    5844 
    5845 > select add #2.20
    5846 
    5847 72 models selected 
    5848 
    5849 > select add #2.420
    5850 
    5851 73 models selected 
    5852 
    5853 > select add #2.349
    5854 
    5855 74 models selected 
    5856 
    5857 > select add #2.362
    5858 
    5859 75 models selected 
    5860 
    5861 > select add #2.238
    5862 
    5863 76 models selected 
    5864 
    5865 > select add #2.289
    5866 
    5867 77 models selected 
    5868 
    5869 > select add #2.351
    5870 
    5871 78 models selected 
    5872 
    5873 > select add #2.407
    5874 
    5875 79 models selected 
    5876 Grouped 79 regions 
    5877 
    5878 > hide #!10 models
    5879 
    5880 > select add #2.430
    5881 
    5882 2 models selected 
    5883 Grouped 2 regions 
    5884 Showing 438 region surfaces 
    5885 
    5886 > select #2.12
    5887 
    5888 1 model selected 
    5889 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked as #11, grid size
    5890 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    5891 
    5892 The cached device pixel ratio value was stale on window expose. Please file a
    5893 QTBUG which explains how to reproduce. 
    5894 
    5895 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    5896 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    5897 > segment_Aug2420204/Basal-Disk.mrc models #11
    5898 
    5899 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked as #12, grid size
    5900 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    5901 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked, density
    5902 threshold 0.003143 
    5903 Showing 437 region surfaces 
    5904 22918 watershed regions, grouped to 437 regions 
    5905 Showing Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked.seg - 437 regions,
    5906 437 surfaces 
    5907 
    5908 > hide #!11 models
    5909 
    5910 > hide #!12 models
    5911 
    5912 > select #2.225
    5913 
    5914 1 model selected 
    5915 
    5916 > select add #2.101
    5917 
    5918 2 models selected 
    5919 
    5920 > select add #2.145
    5921 
    5922 3 models selected 
    5923 
    5924 > select add #2.128
    5925 
    5926 4 models selected 
    5927 
    5928 > select add #2.136
    5929 
    5930 5 models selected 
    5931 
    5932 > select add #2.148
    5933 
    5934 6 models selected 
    5935 
    5936 > select add #2.106
    5937 
    5938 7 models selected 
    5939 
    5940 > select add #2.107
    5941 
    5942 8 models selected 
    5943 
    5944 > select add #2.138
    5945 
    5946 9 models selected 
    5947 
    5948 > select add #2.186
    5949 
    5950 10 models selected 
    5951 
    5952 > select add #2.50
    5953 
    5954 11 models selected 
    5955 
    5956 > select add #2.68
    5957 
    5958 12 models selected 
    5959 
    5960 > select add #2.173
    5961 
    5962 13 models selected 
    5963 
    5964 > select add #2.183
    5965 
    5966 14 models selected 
    5967 
    5968 > select add #2.49
    5969 
    5970 15 models selected 
    5971 
    5972 > select add #2.77
    5973 
    5974 16 models selected 
    5975 
    5976 > select add #2.185
    5977 
    5978 17 models selected 
    5979 
    5980 > select add #2.212
    5981 
    5982 18 models selected 
    5983 
    5984 > select add #2.177
    5985 
    5986 19 models selected 
    5987 
    5988 > select add #2.146
    5989 
    5990 20 models selected 
    5991 
    5992 > select add #2.210
    5993 
    5994 21 models selected 
    5995 
    5996 > select add #2.162
    5997 
    5998 22 models selected 
    5999 
    6000 > select add #2.40
    6001 
    6002 23 models selected 
    6003 
    6004 > select add #2.154
    6005 
    6006 24 models selected 
    6007 
    6008 > select add #2.175
    6009 
    6010 25 models selected 
    6011 
    6012 > select add #2.141
    6013 
    6014 26 models selected 
    6015 
    6016 > select add #2.235
    6017 
    6018 27 models selected 
    6019 
    6020 > select add #2.144
    6021 
    6022 28 models selected 
    6023 
    6024 > select add #2.209
    6025 
    6026 29 models selected 
    6027 
    6028 > select add #2.64
    6029 
    6030 30 models selected 
    6031 
    6032 > select add #2.249
    6033 
    6034 31 models selected 
    6035 
    6036 > select add #2.45
    6037 
    6038 32 models selected 
    6039 
    6040 > select add #2.316
    6041 
    6042 33 models selected 
    6043 
    6044 > select add #2.356
    6045 
    6046 34 models selected 
    6047 
    6048 > select add #2.289
    6049 
    6050 35 models selected 
    6051 
    6052 > select add #2.314
    6053 
    6054 36 models selected 
    6055 
    6056 > select subtract #2.249
    6057 
    6058 35 models selected 
    6059 
    6060 > select #2.225
    6061 
    6062 1 model selected 
    6063 
    6064 > select add #2.101
    6065 
    6066 2 models selected 
    6067 
    6068 > select add #2.145
    6069 
    6070 3 models selected 
    6071 
    6072 > select add #2.128
    6073 
    6074 4 models selected 
    6075 
    6076 > select add #2.136
    6077 
    6078 5 models selected 
    6079 
    6080 > select add #2.148
    6081 
    6082 6 models selected 
    6083 
    6084 > select add #2.106
    6085 
    6086 7 models selected 
    6087 
    6088 > select add #2.107
    6089 
    6090 8 models selected 
    6091 
    6092 > select add #2.138
    6093 
    6094 9 models selected 
    6095 Grouped 9 regions 
    6096 
    6097 > select add #2.176
    6098 
    6099 2 models selected 
    6100 
    6101 > select add #2.178
    6102 
    6103 3 models selected 
    6104 
    6105 > select add #2.194
    6106 
    6107 4 models selected 
    6108 
    6109 > select add #2.175
    6110 
    6111 5 models selected 
    6112 
    6113 > select add #2.177
    6114 
    6115 6 models selected 
    6116 
    6117 > select add #2.183
    6118 
    6119 7 models selected 
    6120 
    6121 > select add #2.186
    6122 
    6123 8 models selected 
    6124 
    6125 > select add #2.173
    6126 
    6127 9 models selected 
    6128 Grouped 9 regions 
    6129 
    6130 > select add #2.49
    6131 
    6132 2 models selected 
    6133 
    6134 > select add #2.50
    6135 
    6136 3 models selected 
    6137 
    6138 > select add #2.146
    6139 
    6140 4 models selected 
    6141 
    6142 > select add #2.210
    6143 
    6144 5 models selected 
    6145 
    6146 > select add #2.209
    6147 
    6148 6 models selected 
    6149 
    6150 > select add #2.144
    6151 
    6152 7 models selected 
    6153 
    6154 > select add #2.235
    6155 
    6156 8 models selected 
    6157 
    6158 > select add #2.141
    6159 
    6160 9 models selected 
    6161 
    6162 > select add #2.198
    6163 
    6164 10 models selected 
    6165 
    6166 > select add #2.142
    6167 
    6168 11 models selected 
    6169 
    6170 > select add #2.119
    6171 
    6172 12 models selected 
    6173 
    6174 > select subtract #2.119
    6175 
    6176 11 models selected 
    6177 
    6178 > select add #2.147
    6179 
    6180 12 models selected 
    6181 
    6182 > select clear
    6183 
    6184 Showing 421 region surfaces 
    6185 
    6186 > select clear
    6187 
    6188 > select add #2.141
    6189 
    6190 1 model selected 
    6191 
    6192 > select add #2.142
    6193 
    6194 2 models selected 
    6195 
    6196 > select add #2.147
    6197 
    6198 3 models selected 
    6199 
    6200 > select add #2.118
    6201 
    6202 4 models selected 
    6203 
    6204 > select add #2.28
    6205 
    6206 5 models selected 
    6207 
    6208 > select add #2.146
    6209 
    6210 6 models selected 
    6211 
    6212 > select add #2.49
    6213 
    6214 7 models selected 
    6215 
    6216 > select add #2.50
    6217 
    6218 8 models selected 
    6219 
    6220 > select add #2.68
    6221 
    6222 9 models selected 
    6223 Grouped 9 regions 
    6224 
    6225 > select #2.185
    6226 
    6227 1 model selected 
    6228 
    6229 > select add #2.77
    6230 
    6231 2 models selected 
    6232 
    6233 > select add #2.212
    6234 
    6235 3 models selected 
    6236 
    6237 > select add #2.210
    6238 
    6239 4 models selected 
    6240 
    6241 > select add #2.162
    6242 
    6243 5 models selected 
    6244 
    6245 > select add #2.209
    6246 
    6247 6 models selected 
    6248 
    6249 > select add #2.235
    6250 
    6251 7 models selected 
    6252 
    6253 > select add #2.144
    6254 
    6255 8 models selected 
    6256 
    6257 > select add #2.205
    6258 
    6259 9 models selected 
    6260 
    6261 > select add #2.198
    6262 
    6263 10 models selected 
    6264 
    6265 > select add #2.153
    6266 
    6267 11 models selected 
    6268 
    6269 > select add #2.179
    6270 
    6271 12 models selected 
    6272 
    6273 > select add #2.184
    6274 
    6275 13 models selected 
    6276 
    6277 > select add #2.240
    6278 
    6279 14 models selected 
    6280 Grouped 14 regions 
    6281 
    6282 > select add #2.69
    6283 
    6284 2 models selected 
    6285 
    6286 > select add #2.84
    6287 
    6288 3 models selected 
    6289 
    6290 > select add #2.28
    6291 
    6292 4 models selected 
    6293 
    6294 > select add #2.101
    6295 
    6296 5 models selected 
    6297 Grouped 5 regions 
    6298 
    6299 > select #2.65
    6300 
    6301 1 model selected 
    6302 
    6303 > select add #2.76
    6304 
    6305 2 models selected 
    6306 
    6307 > select add #2.39
    6308 
    6309 3 models selected 
    6310 
    6311 > select add #2.204
    6312 
    6313 4 models selected 
    6314 
    6315 > select add #2.73
    6316 
    6317 5 models selected 
    6318 
    6319 > select add #2.43
    6320 
    6321 6 models selected 
    6322 
    6323 > select add #2.72
    6324 
    6325 7 models selected 
    6326 
    6327 > select add #2.45
    6328 
    6329 8 models selected 
    6330 
    6331 > select add #2.64
    6332 
    6333 9 models selected 
    6334 
    6335 > select add #2.40
    6336 
    6337 10 models selected 
    6338 
    6339 > select add #2.154
    6340 
    6341 11 models selected 
    6342 Grouped 11 regions 
    6343 
    6344 > select add #2.292
    6345 
    6346 2 models selected 
    6347 
    6348 > select add #2.350
    6349 
    6350 3 models selected 
    6351 
    6352 > select add #2.300
    6353 
    6354 4 models selected 
    6355 
    6356 > select add #2.271
    6357 
    6358 5 models selected 
    6359 
    6360 > select add #2.346
    6361 
    6362 6 models selected 
    6363 
    6364 > select add #2.243
    6365 
    6366 7 models selected 
    6367 
    6368 > select add #2.166
    6369 
    6370 8 models selected 
    6371 
    6372 > select add #2.325
    6373 
    6374 9 models selected 
    6375 
    6376 > select add #2.316
    6377 
    6378 10 models selected 
    6379 
    6380 > select add #2.356
    6381 
    6382 11 models selected 
    6383 
    6384 > select add #2.289
    6385 
    6386 12 models selected 
    6387 
    6388 > select add #2.314
    6389 
    6390 13 models selected 
    6391 Grouped 13 regions 
    6392 Ungrouped to 13 regions 
    6393 
    6394 > select subtract #2.50
    6395 
    6396 12 models selected 
    6397 Grouped 12 regions 
    6398 
    6399 > select #2.50
    6400 
    6401 1 model selected 
    6402 
    6403 > select add #2.349
    6404 
    6405 2 models selected 
    6406 
    6407 > select add #2.28
    6408 
    6409 3 models selected 
    6410 Grouped 3 regions 
    6411 
    6412 > select add #2.267
    6413 
    6414 2 models selected 
    6415 
    6416 > select add #2.252
    6417 
    6418 3 models selected 
    6419 
    6420 > select add #2.260
    6421 
    6422 4 models selected 
    6423 
    6424 > select add #2.249
    6425 
    6426 5 models selected 
    6427 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked as #13,
    6428 grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    6429 
    6430 The cached device pixel ratio value was stale on window expose. Please file a
    6431 QTBUG which explains how to reproduce. 
    6432 
    6433 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    6434 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    6435 > segment_Aug2420204/PflC-PflD.mrc models #13
    6436 
    6437 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked as #14,
    6438 grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    6439 Segmenting Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked,
    6440 density threshold 0.003143 
    6441 Showing 377 region surfaces 
    6442 20568 watershed regions, grouped to 377 regions 
    6443 Showing Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked.seg - 377
    6444 regions, 377 surfaces 
    6445 
    6446 > hide #!13 models
    6447 
    6448 > hide #!14 models
    6449 
    6450 > select #2.133
    6451 
    6452 1 model selected 
    6453 
    6454 > select add #2.267
    6455 
    6456 2 models selected 
    6457 
    6458 > select add #2.257
    6459 
    6460 3 models selected 
    6461 
    6462 > select add #2.231
    6463 
    6464 4 models selected 
    6465 
    6466 > select add #2.190
    6467 
    6468 5 models selected 
    6469 
    6470 > select add #2.163
    6471 
    6472 6 models selected 
    6473 
    6474 > select add #2.247
    6475 
    6476 7 models selected 
    6477 
    6478 > select add #2.285
    6479 
    6480 8 models selected 
    6481 
    6482 > select add #2.234
    6483 
    6484 9 models selected 
    6485 Grouped 9 regions 
    6486 
    6487 > select add #2.258
    6488 
    6489 2 models selected 
    6490 
    6491 > select add #2.307
    6492 
    6493 3 models selected 
    6494 Grouped 3 regions 
    6495 
    6496 > select #2.133
    6497 
    6498 1 model selected 
    6499 
    6500 > select add #2.313
    6501 
    6502 2 models selected 
    6503 Grouped 2 regions 
    6504 
    6505 > select #2.133
    6506 
    6507 1 model selected 
    6508 
    6509 > select add #2.296
    6510 
    6511 2 models selected 
    6512 Grouped 2 regions 
    6513 
    6514 > select add #2.320
    6515 
    6516 2 models selected 
    6517 Grouped 2 regions 
    6518 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked_imasked as
    6519 #15, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    6520 float32 
    6521 
    6522 The cached device pixel ratio value was stale on window expose. Please file a
    6523 QTBUG which explains how to reproduce. 
    6524 
    6525 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    6526 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    6527 > segment_Aug2420204/Artifacts2.mrc models #15
    6528 
    6529 Opened Rev-CjpflAB-mask-L0_imasked_imasked_imasked_imasked_imasked_imasked as
    6530 #16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    6531 float32 
    6532 Segmenting Rev-CjpflAB-
    6533 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked, density threshold
    6534 0.003143 
    6535 Showing 363 region surfaces 
    6536 19942 watershed regions, grouped to 363 regions 
    6537 Showing Rev-CjpflAB-
    6538 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked.seg - 363 regions, 363
    6539 surfaces 
    6540 
    6541 > hide #!15 models
    6542 
    6543 > hide #!16 models
    6544 
    6545 Drag select of 26869, 8524 of 13900 triangles, 26883, 6666 of 8720 triangles,
    6546 26871, 2613 of 5312 triangles, 26856, 3553 of 4572 triangles, 26615, 3559 of
    6547 3928 triangles, 26885, 3805 of 4036 triangles, 26877, 2500 of 3532 triangles,
    6548 26878, 1482 of 2732 triangles, 22762, 26906, 1277 of 2324 triangles, 25872,
    6549 26879, 24548, 1346 of 1468 triangles, 26863, 440 of 2068 triangles, 26607,
    6550 22757, 19884, 25911, 26903, 648 of 728 triangles, 26310, 26880, 26900, 99 of
    6551 496 triangles, 26886, 160 of 524 triangles, 19814 
    6552 Drag select of 19936, 19939 
    6553 Drag select of 26737, 420 of 804 triangles 
    6554 
    6555 > select add #2.313
    6556 
    6557 28 models selected 
    6558 
    6559 > select add #2.307
    6560 
    6561 29 models selected 
    6562 
    6563 > select add #2.346
    6564 
    6565 30 models selected 
    6566 
    6567 > select add #2.359
    6568 
    6569 31 models selected 
    6570 
    6571 > select add #2.311
    6572 
    6573 32 models selected 
    6574 
    6575 > select add #2.254
    6576 
    6577 33 models selected 
    6578 
    6579 > select add #2.291
    6580 
    6581 34 models selected 
    6582 
    6583 > select add #2.310
    6584 
    6585 35 models selected 
    6586 
    6587 > select add #2.294
    6588 
    6589 36 models selected 
    6590 
    6591 > select add #2.274
    6592 
    6593 37 models selected 
    6594 
    6595 > select add #2.282
    6596 
    6597 38 models selected 
    6598 
    6599 > select add #2.272
    6600 
    6601 39 models selected 
    6602 
    6603 > select add #2.299
    6604 
    6605 40 models selected 
    6606 
    6607 > select add #2.335
    6608 
    6609 41 models selected 
    6610 
    6611 > select add #2.360
    6612 
    6613 42 models selected 
    6614 
    6615 > select add #2.318
    6616 
    6617 43 models selected 
    6618 
    6619 > select add #2.305
    6620 
    6621 44 models selected 
    6622 
    6623 > select add #2.331
    6624 
    6625 45 models selected 
    6626 
    6627 > select add #2.315
    6628 
    6629 46 models selected 
    6630 
    6631 > select add #2.332
    6632 
    6633 47 models selected 
    6634 
    6635 > select add #2.322
    6636 
    6637 48 models selected 
    6638 
    6639 > select add #2.355
    6640 
    6641 49 models selected 
    6642 
    6643 > select add #2.348
    6644 
    6645 50 models selected 
    6646 Grouped 50 regions 
    6647 Opened Rev-CjpflAB-
    6648 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #17, grid
    6649 size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values float32 
    6650 Segmenting Rev-CjpflAB-
    6651 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    6652 threshold 0.003143 
    6653 Showing 315 region surfaces 
    6654 19467 watershed regions, grouped to 315 regions 
    6655 Showing Rev-CjpflAB-
    6656 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 315
    6657 regions, 315 surfaces 
    6658 
    6659 > select #2.135
    6660 
    6661 1 model selected 
    6662 
    6663 > select add #2.151
    6664 
    6665 2 models selected 
    6666 
    6667 > select add #2.146
    6668 
    6669 3 models selected 
    6670 
    6671 > select add #2.137
    6672 
    6673 4 models selected 
    6674 
    6675 > select add #2.89
    6676 
    6677 5 models selected 
    6678 
    6679 > hide #!17 models
    6680 
    6681 Grouped 5 regions 
    6682 Opened Rev-CjpflAB-
    6683 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    6684 #18, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    6685 float32 
    6686 
    6687 The cached device pixel ratio value was stale on window expose. Please file a
    6688 QTBUG which explains how to reproduce. 
    6689 
    6690 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    6691 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    6692 > segment_Aug2420204/MotBpg.mrc models #18
    6693 
    6694 Opened Rev-CjpflAB-
    6695 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    6696 #19, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    6697 float32 
    6698 Segmenting Rev-CjpflAB-
    6699 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    6700 density threshold 0.003143 
    6701 Showing 310 region surfaces 
    6702 19337 watershed regions, grouped to 310 regions 
    6703 Showing Rev-CjpflAB-
    6704 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg -
    6705 310 regions, 310 surfaces 
    6706 
    6707 > hide #!18 models
    6708 
    6709 > hide #!19 models
    6710 
    6711 > select #2.259
    6712 
    6713 1 model selected 
    6714 
    6715 > select add #2.269
    6716 
    6717 2 models selected 
    6718 
    6719 > select add #2.248
    6720 
    6721 3 models selected 
    6722 
    6723 > select add #2.278
    6724 
    6725 4 models selected 
    6726 
    6727 > select add #2.264
    6728 
    6729 5 models selected 
    6730 
    6731 > select add #2.292
    6732 
    6733 6 models selected 
    6734 
    6735 > select add #2.207
    6736 
    6737 7 models selected 
    6738 
    6739 > select add #2.258
    6740 
    6741 8 models selected 
    6742 
    6743 > select add #2.244
    6744 
    6745 9 models selected 
    6746 
    6747 > select add #2.272
    6748 
    6749 10 models selected 
    6750 
    6751 > select add #2.273
    6752 
    6753 11 models selected 
    6754 
    6755 > select add #2.257
    6756 
    6757 12 models selected 
    6758 
    6759 > select add #2.243
    6760 
    6761 13 models selected 
    6762 
    6763 > select add #2.275
    6764 
    6765 14 models selected 
    6766 Grouped 14 regions 
    6767 Opened Rev-CjpflAB-
    6768 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    6769 as #20, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    6770 float32 
    6771 
    6772 The cached device pixel ratio value was stale on window expose. Please file a
    6773 QTBUG which explains how to reproduce. 
    6774 
    6775 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    6776 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    6777 > segment_Aug2420204/Artifact3.mrc models #20
    6778 
    6779 Opened Rev-CjpflAB-
    6780 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    6781 as #21, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    6782 float32 
    6783 Segmenting Rev-CjpflAB-
    6784 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    6785 density threshold 0.003143 
    6786 Showing 296 region surfaces 
    6787 18845 watershed regions, grouped to 296 regions 
    6788 Showing Rev-CjpflAB-
    6789 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    6790 - 296 regions, 296 surfaces 
    6791 
    6792 > hide #!20 models
    6793 
    6794 > hide #!21 models
    6795 
    6796 > select #2.95
    6797 
    6798 1 model selected 
    6799 
    6800 > select add #2.116
    6801 
    6802 2 models selected 
    6803 
    6804 > select add #2.141
    6805 
    6806 3 models selected 
    6807 Grouped 3 regions 
    6808 
    6809 > select #2.220
    6810 
    6811 1 model selected 
    6812 
    6813 > select add #2.200
    6814 
    6815 2 models selected 
    6816 
    6817 > select add #2.165
    6818 
    6819 3 models selected 
    6820 
    6821 > select add #2.260
    6822 
    6823 4 models selected 
    6824 Grouped 4 regions 
    6825 
    6826 > select add #2.140
    6827 
    6828 2 models selected 
    6829 Grouped 2 regions 
    6830 
    6831 > select #2.109
    6832 
    6833 1 model selected 
    6834 
    6835 > select add #2.168
    6836 
    6837 2 models selected 
    6838 
    6839 > select add #2.116
    6840 
    6841 3 models selected 
    6842 Grouped 3 regions 
    6843 
    6844 > select add #2.83
    6845 
    6846 2 models selected 
    6847 Grouped 2 regions 
    6848 
    6849 > select add #2.93
    6850 
    6851 2 models selected 
    6852 
    6853 > select add #2.155
    6854 
    6855 3 models selected 
    6856 
    6857 > select add #2.124
    6858 
    6859 4 models selected 
    6860 Grouped 4 regions 
    6861 
    6862 > select add #2.95
    6863 
    6864 2 models selected 
    6865 Grouped 2 regions 
    6866 
    6867 > select add #2.218
    6868 
    6869 2 models selected 
    6870 
    6871 > select add #2.199
    6872 
    6873 3 models selected 
    6874 
    6875 > select add #2.157
    6876 
    6877 4 models selected 
    6878 
    6879 > select add #2.254
    6880 
    6881 5 models selected 
    6882 
    6883 > select add #2.148
    6884 
    6885 6 models selected 
    6886 Grouped 6 regions 
    6887 
    6888 > select add #2.222
    6889 
    6890 2 models selected 
    6891 
    6892 > select add #2.215
    6893 
    6894 3 models selected 
    6895 
    6896 > select add #2.127
    6897 
    6898 4 models selected 
    6899 
    6900 > select add #2.98
    6901 
    6902 5 models selected 
    6903 Grouped 5 regions 
    6904 
    6905 > select add #2.228
    6906 
    6907 2 models selected 
    6908 
    6909 > select add #2.110
    6910 
    6911 3 models selected 
    6912 
    6913 > select add #2.135
    6914 
    6915 4 models selected 
    6916 Grouped 4 regions 
    6917 
    6918 > select #2.139
    6919 
    6920 1 model selected 
    6921 Ungrouped to 4 regions 
    6922 
    6923 > select #2.109
    6924 
    6925 1 model selected 
    6926 
    6927 > select add #2.83
    6928 
    6929 2 models selected 
    6930 Grouped 2 regions 
    6931 
    6932 > select #2.93
    6933 
    6934 1 model selected 
    6935 Ungrouped to 15 regions 
    6936 
    6937 > select #2.127
    6938 
    6939 1 model selected 
    6940 
    6941 > select add #2.140
    6942 
    6943 2 models selected 
    6944 
    6945 > select add #2.83
    6946 
    6947 3 models selected 
    6948 Grouped 3 regions 
    6949 
    6950 > select #2.39
    6951 
    6952 1 model selected 
    6953 
    6954 > select add #2.102
    6955 
    6956 2 models selected 
    6957 
    6958 > select add #2.162
    6959 
    6960 3 models selected 
    6961 
    6962 > select add #2.26
    6963 
    6964 4 models selected 
    6965 
    6966 > select subtract #2.26
    6967 
    6968 3 models selected 
    6969 Ungrouped to 10 regions 
    6970 Ungrouped to 75 regions 
    6971 Ungrouped to 127 regions 
    6972 
    6973 > select #2.26
    6974 
    6975 1 model selected 
    6976 
    6977 > select subtract #2.26
    6978 
    6979 Nothing selected 
    6980 Ungrouped to 376 regions 
    6981 Ungrouped to 1634 regions 
    6982 
    6983 > select #2.1055
    6984 
    6985 1 model selected 
    6986 
    6987 > select #2.1055
    6988 
    6989 1 model selected 
    6990 
    6991 > select #2.1051
    6992 
    6993 1 model selected 
    6994 
    6995 > select add #2.1056
    6996 
    6997 2 models selected 
    6998 
    6999 > select add #2.1052
    7000 
    7001 3 models selected 
    7002 Ungrouped to 29 regions 
    7003 
    7004 > select #2.105
    7005 
    7006 1 model selected 
    7007 
    7008 > select add #2.100
    7009 
    7010 2 models selected 
    7011 
    7012 > select add #2.90
    7013 
    7014 3 models selected 
    7015 
    7016 > select add #2.76
    7017 
    7018 4 models selected 
    7019 
    7020 > select add #2.80
    7021 
    7022 5 models selected 
    7023 
    7024 > select add #2.45
    7025 
    7026 6 models selected 
    7027 
    7028 > select add #2.1055
    7029 
    7030 7 models selected 
    7031 
    7032 > select add #2.115
    7033 
    7034 8 models selected 
    7035 
    7036 > select subtract #2.115
    7037 
    7038 7 models selected 
    7039 
    7040 > select #2.1055
    7041 
    7042 1 model selected 
    7043 Ungrouped to 9 regions 
    7044 
    7045 > select #2.2304
    7046 
    7047 1 model selected 
    7048 
    7049 > select #2.1733
    7050 
    7051 1 model selected 
    7052 
    7053 > select add #2.1731
    7054 
    7055 2 models selected 
    7056 
    7057 > select add #2.1732
    7058 
    7059 3 models selected 
    7060 Grouped 3 regions 
    7061 
    7062 > select add #2.96
    7063 
    7064 2 models selected 
    7065 
    7066 > select add #2.106
    7067 
    7068 3 models selected 
    7069 
    7070 > select add #2.81
    7071 
    7072 4 models selected 
    7073 
    7074 > select add #2.63
    7075 
    7076 5 models selected 
    7077 
    7078 > select add #2.71
    7079 
    7080 6 models selected 
    7081 
    7082 > select add #2.119
    7083 
    7084 7 models selected 
    7085 
    7086 > select add #2.111
    7087 
    7088 8 models selected 
    7089 
    7090 > select add #2.1735
    7091 
    7092 9 models selected 
    7093 
    7094 > select add #2.1734
    7095 
    7096 10 models selected 
    7097 Grouped 10 regions 
    7098 
    7099 > select add #2.2304
    7100 
    7101 2 models selected 
    7102 
    7103 > select add #2.1963
    7104 
    7105 3 models selected 
    7106 
    7107 > select subtract #2.1963
    7108 
    7109 2 models selected 
    7110 
    7111 > select add #2.1963
    7112 
    7113 3 models selected 
    7114 
    7115 > select add #2.113
    7116 
    7117 4 models selected 
    7118 
    7119 > select add #2.1965
    7120 
    7121 5 models selected 
    7122 
    7123 > select add #2.2324
    7124 
    7125 6 models selected 
    7126 
    7127 > select add #2.499
    7128 
    7129 7 models selected 
    7130 Grouped 7 regions 
    7131 
    7132 > select add #2.902
    7133 
    7134 2 models selected 
    7135 
    7136 > select add #2.2306
    7137 
    7138 3 models selected 
    7139 
    7140 > select add #2.901
    7141 
    7142 4 models selected 
    7143 
    7144 > select add #2.900
    7145 
    7146 5 models selected 
    7147 Grouped 5 regions 
    7148 
    7149 > select add #2.122
    7150 
    7151 2 models selected 
    7152 
    7153 > select add #2.427
    7154 
    7155 3 models selected 
    7156 
    7157 > select add #2.428
    7158 
    7159 4 models selected 
    7160 
    7161 > select subtract #2.428
    7162 
    7163 3 models selected 
    7164 
    7165 > select subtract #2.427
    7166 
    7167 2 models selected 
    7168 
    7169 > select add #2.378
    7170 
    7171 3 models selected 
    7172 
    7173 > select add #2.347
    7174 
    7175 4 models selected 
    7176 
    7177 > select add #2.382
    7178 
    7179 5 models selected 
    7180 
    7181 > select add #2.466
    7182 
    7183 6 models selected 
    7184 
    7185 > select add #2.473
    7186 
    7187 7 models selected 
    7188 
    7189 > select add #2.228
    7190 
    7191 8 models selected 
    7192 Grouped 8 regions 
    7193 
    7194 > select add #2.427
    7195 
    7196 2 models selected 
    7197 
    7198 > select add #2.428
    7199 
    7200 3 models selected 
    7201 
    7202 > select add #2.429
    7203 
    7204 4 models selected 
    7205 
    7206 > select add #2.336
    7207 
    7208 5 models selected 
    7209 
    7210 > select add #2.379
    7211 
    7212 6 models selected 
    7213 
    7214 > select add #2.384
    7215 
    7216 7 models selected 
    7217 
    7218 > select add #2.360
    7219 
    7220 8 models selected 
    7221 
    7222 > select add #2.133
    7223 
    7224 9 models selected 
    7225 
    7226 > select add #2.132
    7227 
    7228 10 models selected 
    7229 
    7230 > select add #2.1050
    7231 
    7232 11 models selected 
    7233 
    7234 > select add #2.1053
    7235 
    7236 12 models selected 
    7237 
    7238 > select subtract #2.1053
    7239 
    7240 11 models selected 
    7241 Grouped 11 regions 
    7242 
    7243 > select add #2.383
    7244 
    7245 2 models selected 
    7246 Grouped 2 regions 
    7247 
    7248 > select clear
    7249 
    7250 > select #2.1053
    7251 
    7252 1 model selected 
    7253 Ungrouped to 15 regions 
    7254 
    7255 > select #2.137
    7256 
    7257 1 model selected 
    7258 
    7259 > select add #2.134
    7260 
    7261 2 models selected 
    7262 
    7263 > select add #2.63
    7264 
    7265 3 models selected 
    7266 Grouped 3 regions 
    7267 
    7268 > select add #2.112
    7269 
    7270 2 models selected 
    7271 
    7272 > select #2.63
    7273 
    7274 1 model selected 
    7275 
    7276 > select #2.63
    7277 
    7278 1 model selected 
    7279 
    7280 > select add #2.112
    7281 
    7282 2 models selected 
    7283 
    7284 > select add #2.117
    7285 
    7286 3 models selected 
    7287 
    7288 > select add #2.45
    7289 
    7290 4 models selected 
    7291 
    7292 > select add #2.76
    7293 
    7294 5 models selected 
    7295 
    7296 > select add #2.80
    7297 
    7298 6 models selected 
    7299 
    7300 > select add #2.105
    7301 
    7302 7 models selected 
    7303 
    7304 > select add #2.97
    7305 
    7306 8 models selected 
    7307 
    7308 > select subtract #2.97
    7309 
    7310 7 models selected 
    7311 
    7312 > select add #2.100
    7313 
    7314 8 models selected 
    7315 
    7316 > select add #2.90
    7317 
    7318 9 models selected 
    7319 Grouped 9 regions 
    7320 
    7321 > select add #2.101
    7322 
    7323 2 models selected 
    7324 
    7325 > select clear
    7326 
    7327 > select #2.101
    7328 
    7329 1 model selected 
    7330 Ungrouped to 2 regions 
    7331 
    7332 > select #2.63
    7333 
    7334 1 model selected 
    7335 
    7336 > select add #2.76
    7337 
    7338 2 models selected 
    7339 
    7340 > select add #2.92
    7341 
    7342 3 models selected 
    7343 Grouped 3 regions 
    7344 
    7345 > select add #2.45
    7346 
    7347 2 models selected 
    7348 Grouped 2 regions 
    7349 
    7350 > select add #2.108
    7351 
    7352 2 models selected 
    7353 
    7354 > select add #2.366
    7355 
    7356 3 models selected 
    7357 
    7358 > select add #2.420
    7359 
    7360 4 models selected 
    7361 
    7362 > select add #2.318
    7363 
    7364 5 models selected 
    7365 
    7366 > select add #2.355
    7367 
    7368 6 models selected 
    7369 
    7370 > select add #2.422
    7371 
    7372 7 models selected 
    7373 
    7374 > select add #2.421
    7375 
    7376 8 models selected 
    7377 
    7378 > select add #2.413
    7379 
    7380 9 models selected 
    7381 
    7382 > select add #2.475
    7383 
    7384 10 models selected 
    7385 
    7386 > select add #2.414
    7387 
    7388 11 models selected 
    7389 Grouped 11 regions 
    7390 
    7391 > select add #2.354
    7392 
    7393 2 models selected 
    7394 
    7395 > select add #2.400
    7396 
    7397 3 models selected 
    7398 
    7399 > select add #2.469
    7400 
    7401 4 models selected 
    7402 Grouped 4 regions 
    7403 
    7404 > select add #2.476
    7405 
    7406 2 models selected 
    7407 
    7408 > select add #2.401
    7409 
    7410 3 models selected 
    7411 Grouped 3 regions 
    7412 
    7413 > select add #2.402
    7414 
    7415 2 models selected 
    7416 
    7417 > select add #2.346
    7418 
    7419 3 models selected 
    7420 
    7421 > select add #2.477
    7422 
    7423 4 models selected 
    7424 
    7425 > select add #2.222
    7426 
    7427 5 models selected 
    7428 
    7429 > select add #2.403
    7430 
    7431 6 models selected 
    7432 
    7433 > select add #2.305
    7434 
    7435 7 models selected 
    7436 Grouped 7 regions 
    7437 
    7438 > select add #2.371
    7439 
    7440 2 models selected 
    7441 
    7442 > select add #2.474
    7443 
    7444 3 models selected 
    7445 
    7446 > select add #2.391
    7447 
    7448 4 models selected 
    7449 
    7450 > select add #2.303
    7451 
    7452 5 models selected 
    7453 
    7454 > select add #2.482
    7455 
    7456 6 models selected 
    7457 
    7458 > select add #2.464
    7459 
    7460 7 models selected 
    7461 
    7462 > select add #2.478
    7463 
    7464 8 models selected 
    7465 
    7466 > select add #2.480
    7467 
    7468 9 models selected 
    7469 Grouped 9 regions 
    7470 
    7471 > select add #2.416
    7472 
    7473 2 models selected 
    7474 
    7475 > select add #2.387
    7476 
    7477 3 models selected 
    7478 
    7479 > select add #2.404
    7480 
    7481 4 models selected 
    7482 
    7483 > select add #2.405
    7484 
    7485 5 models selected 
    7486 
    7487 > select add #2.479
    7488 
    7489 6 models selected 
    7490 
    7491 > select add #2.373
    7492 
    7493 7 models selected 
    7494 Grouped 7 regions 
    7495 
    7496 > select add #2.406
    7497 
    7498 2 models selected 
    7499 Grouped 2 regions 
    7500 
    7501 > select add #2.415
    7502 
    7503 2 models selected 
    7504 
    7505 > select add #2.372
    7506 
    7507 3 models selected 
    7508 Grouped 3 regions 
    7509 
    7510 > select add #2.299
    7511 
    7512 2 models selected 
    7513 
    7514 > select subtract #2.299
    7515 
    7516 1 model selected 
    7517 Grouped 1 regions 
    7518 
    7519 > select #2.45
    7520 
    7521 1 model selected 
    7522 
    7523 > select add #2.299
    7524 
    7525 2 models selected 
    7526 Grouped 2 regions 
    7527 
    7528 > select add #2.356
    7529 
    7530 2 models selected 
    7531 
    7532 > select add #2.380
    7533 
    7534 3 models selected 
    7535 Grouped 3 regions 
    7536 
    7537 > select #2.83
    7538 
    7539 1 model selected 
    7540 
    7541 > select clear
    7542 
    7543 Showing 1942 region surfaces 
    7544 
    7545 > select #2.45
    7546 
    7547 1 model selected 
    7548 
    7549 > select add #2.118
    7550 
    7551 2 models selected 
    7552 
    7553 > select add #2.99
    7554 
    7555 3 models selected 
    7556 
    7557 > select add #2.2098
    7558 
    7559 4 models selected 
    7560 
    7561 > select add #2.2099
    7562 
    7563 5 models selected 
    7564 
    7565 > select add #2.120
    7566 
    7567 6 models selected 
    7568 
    7569 > select subtract #2.118
    7570 
    7571 5 models selected 
    7572 
    7573 > select subtract #2.45
    7574 
    7575 4 models selected 
    7576 
    7577 > select add #2.115
    7578 
    7579 5 models selected 
    7580 
    7581 > select add #2.488
    7582 
    7583 6 models selected 
    7584 
    7585 > select add #2.45
    7586 
    7587 7 models selected 
    7588 
    7589 > select add #2.2307
    7590 
    7591 8 models selected 
    7592 
    7593 > select add #2.2309
    7594 
    7595 9 models selected 
    7596 
    7597 > select subtract #2.2307
    7598 
    7599 8 models selected 
    7600 Grouped 8 regions 
    7601 
    7602 > select add #2.118
    7603 
    7604 2 models selected 
    7605 
    7606 > select add #2.2308
    7607 
    7608 3 models selected 
    7609 
    7610 > select add #2.104
    7611 
    7612 4 models selected 
    7613 Grouped 4 regions 
    7614 
    7615 > select add #2.2307
    7616 
    7617 2 models selected 
    7618 
    7619 > select subtract #2.2307
    7620 
    7621 1 model selected 
    7622 Grouped 1 regions 
    7623 
    7624 > select #2.2307
    7625 
    7626 1 model selected 
    7627 
    7628 > select subtract #2.2307
    7629 
    7630 Nothing selected 
    7631 
    7632 > select add #2.2307
    7633 
    7634 1 model selected 
    7635 
    7636 > select add #2.45
    7637 
    7638 2 models selected 
    7639 Grouped 2 regions 
    7640 
    7641 > select add #2.1959
    7642 
    7643 2 models selected 
    7644 
    7645 > select subtract #2.1959
    7646 
    7647 1 model selected 
    7648 
    7649 > select clear
    7650 
    7651 > select #2.45
    7652 
    7653 1 model selected 
    7654 
    7655 > select #2.45
    7656 
    7657 1 model selected 
    7658 
    7659 > select add #2.2305
    7660 
    7661 2 models selected 
    7662 
    7663 > select add #2.2325
    7664 
    7665 3 models selected 
    7666 
    7667 > select add #2.2326
    7668 
    7669 4 models selected 
    7670 
    7671 > select add #2.1964
    7672 
    7673 5 models selected 
    7674 
    7675 > select add #2.899
    7676 
    7677 6 models selected 
    7678 Grouped 6 regions 
    7679 
    7680 > select clear
    7681 
    7682 > select #2.45
    7683 
    7684 1 model selected 
    7685 
    7686 > select clear
    7687 
    7688 > select #2.45
    7689 
    7690 1 model selected 
    7691 Grouped 1 regions 
    7692 
    7693 > select clear
    7694 
    7695 > select #2.45
    7696 
    7697 1 model selected 
    7698 Ungrouped to 1 regions 
    7699 Ungrouped to 6 regions 
    7700 Ungrouped to 26 regions 
    7701 Ungrouped to 76 regions 
    7702 Ungrouped to 22 regions 
    7703 Ungrouped to 24 regions 
    7704 
    7705 > select #2.355
    7706 
    7707 1 model selected 
    7708 Ungrouped to 3 regions 
    7709 Ungrouped to 2 regions 
    7710 Ungrouped to 1 regions 
    7711 Ungrouped to 3 regions 
    7712 
    7713 > select #2.355
    7714 
    7715 1 model selected 
    7716 Ungrouped to 2 regions 
    7717 Ungrouped to 7 regions 
    7718 
    7719 > select #2.401
    7720 
    7721 1 model selected 
    7722 Ungrouped to 9 regions 
    7723 Ungrouped to 15 regions 
    7724 
    7725 > select clear
    7726 
    7727 > select #2.478
    7728 
    7729 1 model selected 
    7730 Ungrouped to 3 regions 
    7731 Ungrouped to 4 regions 
    7732 
    7733 > select #2.482
    7734 
    7735 1 model selected 
    7736 Ungrouped to 11 regions 
    7737 Ungrouped to 7 regions 
    7738 
    7739 > select #2.515
    7740 
    7741 1 model selected 
    7742 Ungrouped to 9 regions 
    7743 Ungrouped to 13 regions 
    7744 
    7745 > select #2.537
    7746 
    7747 1 model selected 
    7748 Ungrouped to 2 regions 
    7749 Ungrouped to 11 regions 
    7750 
    7751 > select #2.519
    7752 
    7753 1 model selected 
    7754 Ungrouped to 8 regions 
    7755 Ungrouped to 12 regions 
    7756 
    7757 > select #2.593
    7758 
    7759 1 model selected 
    7760 Ungrouped to 7 regions 
    7761 Ungrouped to 69 regions 
    7762 
    7763 > select #2.673
    7764 
    7765 1 model selected 
    7766 
    7767 > select #2.673
    7768 
    7769 1 model selected 
    7770 Ungrouped to 7 regions 
    7771 Ungrouped to 0 regions 
    7772 
    7773 > select #2.573
    7774 
    7775 1 model selected 
    7776 
    7777 > select add #2.571
    7778 
    7779 2 models selected 
    7780 
    7781 > select add #2.596
    7782 
    7783 3 models selected 
    7784 
    7785 > select clear
    7786 
    7787 [Repeated 1 time(s)]Drag select of 15694, 14388, 16045, 16119, 16211, 15016,
    7788 16290, 16865, 15943, 14406, 15573, 15432, 15266, 15574, 16049, 16534, 14863,
    7789 15839, 15431, 15259, 15070, 14646, 16373, 16141, 15433, 15712, 15260, 15946,
    7790 15240, 15557, 16129, 15822, 15054, 16482, 15954, 15395, 16112, 16123, 15929,
    7791 14813, 14590, 14584, 14359, 15022, 14114, 15399, 16521, 14785, 16636, 16281,
    7792 15212, 15674, 14578, 15386, 15390, 13616, 12099, 14607, 14130, 11794, 15414,
    7793 15245, 15052, 15820, 15239, 14834, 14870, 15268, 14828, 16433, 16477, 15942,
    7794 15695, 15041, 15404, 15408, 15411, 15235, 11181, 11482, 14819, 15690, 12726,
    7795 12729, 11498, 10881, 13895, 12738, 11182, 12415, 12413, 12097, 14369, 13040,
    7796 14611, 14151, 19250, 10928, 14189, 19089, 19098, 19767, 23443, 23645, 23452,
    7797 24113, 24408, 24073, 24583, 13916, 14171, 13083, 12149, 19280, 20563, 12127,
    7798 19547, 19067, 12748, 17713, 16652, 18162, 18168, 18247, 17574, 17797, 17702,
    7799 17922, 17342, 16581, 16427, 16859, 16741, 16579, 16645, 16432, 16704, 16997,
    7800 16861, 17918, 17921, 17690, 16644, 16646, 16746, 17799, 17349, 21277, 18249,
    7801 17810, 17709, 18251, 18311, 17926, 18177, 18172, 18092, 16866, 17222, 16798,
    7802 18022, 18182, 17600, 17715, 17229, 17941, 17480, 16585, 16796, 16749, 25410,
    7803 17829, 18393, 18190, 17828, 17833, 18109, 17120, 17245, 17946, 18263, 17831,
    7804 17834, 17732, 18189, 17375, 17121, 16718, 22894, 16867, 16939, 16487, 16803,
    7805 17113, 16653, 16811, 16805, 16439, 16584, 16535, 16587, 16714, 16527, 16478,
    7806 16524, 16794, 16709, 16748, 16435, 16586, 24570, 24048, 23922, 13912 of 13984
    7807 triangles, 24655, 22984, 21069, 21011, 23263, 16227, 16138, 14395, 15058,
    7808 21667, 20987, 20972, 19207, 23293, 23216, 15821, 15228, 14155, 15945, 13656,
    7809 13653, 20073, 14393, 19003, 11533, 19965, 15251, 23275, 23197, 16139, 14637,
    7810 21830, 23091, 16542, 16596, 21433, 23963, 25401, 33304 of 33372 triangles,
    7811 16658, 21548, 23885, 21384, 21633, 21426, 19212, 23244, 16127, 16031, 21130,
    7812 16019, 21148, 16218, 15697, 15231, 14612, 14822, 21073, 21182, 23385, 23271,
    7813 16143, 14657, 14421, 21855, 23076, 23012, 23052, 23097, 16489, 16541, 16954,
    7814 16814, 16755 
    7815 Grouped 286 regions 
    7816 
    7817 > select clear
    7818 
    7819 Showing 1929 region surfaces 
    7820 
    7821 > select #2.45
    7822 
    7823 1 model selected 
    7824 Opened Rev-CjpflAB-
    7825 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    7826 as #22, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    7827 float32 
    7828 
    7829 The cached device pixel ratio value was stale on window expose. Please file a
    7830 QTBUG which explains how to reproduce. 
    7831 
    7832 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    7833 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    7834 > segment_Aug2420204/MS-ring.mrc models #22
    7835 
    7836 Opened Rev-CjpflAB-
    7837 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    7838 as #23, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    7839 float32 
    7840 Segmenting Rev-CjpflAB-
    7841 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    7842 density threshold 0.003143 
    7843 Showing 290 region surfaces 
    7844 18166 watershed regions, grouped to 290 regions 
    7845 Showing Rev-CjpflAB-
    7846 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    7847 - 290 regions, 290 surfaces 
    7848 
    7849 > hide #!22 models
    7850 
    7851 > hide #!23 models
    7852 
    7853 > select #2.90
    7854 
    7855 1 model selected 
    7856 
    7857 > select add #2.110
    7858 
    7859 2 models selected 
    7860 
    7861 > select add #2.133
    7862 
    7863 3 models selected 
    7864 Grouped 3 regions 
    7865 
    7866 > select add #2.211
    7867 
    7868 2 models selected 
    7869 
    7870 > select add #2.191
    7871 
    7872 3 models selected 
    7873 
    7874 > select add #2.148
    7875 
    7876 4 models selected 
    7877 
    7878 > select add #2.248
    7879 
    7880 5 models selected 
    7881 Drag select of 24474, 18 of 70876 triangles, 24048, 6 of 15928 triangles,
    7882 24459, 11 of 15700 triangles, 24074, 16 of 16680 triangles 
    7883 
    7884 > select add #2.148
    7885 
    7886 8 models selected 
    7887 Showing 288 region surfaces 
    7888 
    7889 > select #2.90
    7890 
    7891 1 model selected 
    7892 
    7893 > select add #2.132
    7894 
    7895 2 models selected 
    7896 
    7897 > select add #2.254
    7898 
    7899 3 models selected 
    7900 
    7901 > select add #2.155
    7902 
    7903 4 models selected 
    7904 
    7905 > select add #2.192
    7906 
    7907 5 models selected 
    7908 
    7909 > select add #2.213
    7910 
    7911 6 models selected 
    7912 Grouped 6 regions 
    7913 
    7914 > select #2.211
    7915 
    7916 1 model selected 
    7917 
    7918 > select add #2.191
    7919 
    7920 2 models selected 
    7921 
    7922 > select add #2.148
    7923 
    7924 3 models selected 
    7925 
    7926 > select add #2.248
    7927 
    7928 4 models selected 
    7929 
    7930 > select add #2.139
    7931 
    7932 5 models selected 
    7933 Grouped 5 regions 
    7934 
    7935 > select #2.215
    7936 
    7937 1 model selected 
    7938 
    7939 > select add #2.208
    7940 
    7941 2 models selected 
    7942 
    7943 > select add #2.120
    7944 
    7945 3 models selected 
    7946 
    7947 > select add #2.93
    7948 
    7949 4 models selected 
    7950 
    7951 > select add #2.131
    7952 
    7953 5 models selected 
    7954 
    7955 > select add #2.222
    7956 
    7957 6 models selected 
    7958 
    7959 > select add #2.104
    7960 
    7961 7 models selected 
    7962 
    7963 > select add #2.127
    7964 
    7965 8 models selected 
    7966 Grouped 8 regions 
    7967 
    7968 > select add #2.110
    7969 
    7970 2 models selected 
    7971 
    7972 > select add #2.90
    7973 
    7974 3 models selected 
    7975 Grouped 3 regions 
    7976 
    7977 > select add #2.79
    7978 
    7979 2 models selected 
    7980 
    7981 > select #2.79
    7982 
    7983 1 model selected 
    7984 
    7985 > select add #2.159
    7986 
    7987 2 models selected 
    7988 
    7989 > select add #2.103
    7990 
    7991 3 models selected 
    7992 
    7993 > select add #2.88
    7994 
    7995 4 models selected 
    7996 
    7997 > select add #2.146
    7998 
    7999 5 models selected 
    8000 
    8001 > select add #2.117
    8002 
    8003 6 models selected 
    8004 Grouped 6 regions 
    8005 
    8006 > select add #2.90
    8007 
    8008 2 models selected 
    8009 
    8010 > select add #2.53
    8011 
    8012 3 models selected 
    8013 
    8014 > select add #2.201
    8015 
    8016 4 models selected 
    8017 
    8018 > select add #2.168
    8019 
    8020 5 models selected 
    8021 
    8022 > select add #2.156
    8023 
    8024 6 models selected 
    8025 
    8026 > select add #2.219
    8027 
    8028 7 models selected 
    8029 Grouped 7 regions 
    8030 Opened Rev-CjpflAB-
    8031 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    8032 as #24, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    8033 float32 
    8034 
    8035 The cached device pixel ratio value was stale on window expose. Please file a
    8036 QTBUG which explains how to reproduce. 
    8037 
    8038 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    8039 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    8040 > segment_Aug2420204/FlgY-PflA.mrc models #24
    8041 
    8042 Opened Rev-CjpflAB-
    8043 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    8044 as #25, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    8045 float32 
    8046 Segmenting Rev-CjpflAB-
    8047 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    8048 density threshold 0.003143 
    8049 Showing 258 region surfaces 
    8050 17247 watershed regions, grouped to 258 regions 
    8051 Showing Rev-CjpflAB-
    8052 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    8053 - 258 regions, 258 surfaces 
    8054 
    8055 > hide #!24 models
    8056 
    8057 > hide #!25 models
    8058 
    8059 > select #2.45
    8060 
    8061 1 model selected 
    8062 
    8063 > select #2.30
    8064 
    8065 1 model selected 
    8066 Ungrouped to 2 regions 
    8067 
    8068 > select #2.260
    8069 
    8070 1 model selected 
    8071 Ungrouped to 14 regions 
    8072 
    8073 > select subtract #2.269
    8074 
    8075 13 models selected 
    8076 
    8077 > select #2.259
    8078 
    8079 1 model selected 
    8080 
    8081 > select add #2.269
    8082 
    8083 2 models selected 
    8084 Grouped 2 regions 
    8085 
    8086 > select add #2.157
    8087 
    8088 2 models selected 
    8089 Grouped 2 regions 
    8090 
    8091 > select #2.26
    8092 
    8093 1 model selected 
    8094 Ungrouped to 2 regions 
    8095 
    8096 > select #2.260
    8097 
    8098 1 model selected 
    8099 
    8100 > select add #2.157
    8101 
    8102 2 models selected 
    8103 Grouped 2 regions 
    8104 
    8105 > select #2.127
    8106 
    8107 1 model selected 
    8108 Ungrouped to 4 regions 
    8109 
    8110 > select #2.157
    8111 
    8112 1 model selected 
    8113 
    8114 > select add #2.269
    8115 
    8116 2 models selected 
    8117 
    8118 > select add #2.26
    8119 
    8120 3 models selected 
    8121 
    8122 > select subtract #2.26
    8123 
    8124 2 models selected 
    8125 Grouped 2 regions 
    8126 
    8127 > select #2.26
    8128 
    8129 1 model selected 
    8130 
    8131 > select add #2.127
    8132 
    8133 2 models selected 
    8134 
    8135 > select clear
    8136 
    8137 > select #2.127
    8138 
    8139 1 model selected 
    8140 Ungrouped to 2 regions 
    8141 
    8142 > select #2.269
    8143 
    8144 1 model selected 
    8145 Ungrouped to 9 regions 
    8146 
    8147 > select #2.280
    8148 
    8149 1 model selected 
    8150 
    8151 > select add #2.157
    8152 
    8153 2 models selected 
    8154 
    8155 > select add #2.127
    8156 
    8157 3 models selected 
    8158 
    8159 > select subtract #2.157
    8160 
    8161 2 models selected 
    8162 Grouped 2 regions 
    8163 
    8164 > select add #2.157
    8165 
    8166 2 models selected 
    8167 Grouped 2 regions 
    8168 
    8169 > select add #2.282
    8170 
    8171 2 models selected 
    8172 
    8173 > select add #2.277
    8174 
    8175 3 models selected 
    8176 
    8177 > select add #2.26
    8178 
    8179 4 models selected 
    8180 Grouped 4 regions 
    8181 
    8182 > select #2.140
    8183 
    8184 1 model selected 
    8185 
    8186 > select add #2.26
    8187 
    8188 2 models selected 
    8189 Grouped 2 regions 
    8190 
    8191 > select #2.162
    8192 
    8193 1 model selected 
    8194 
    8195 > select add #2.26
    8196 
    8197 2 models selected 
    8198 Grouped 2 regions 
    8199 
    8200 > select #2.24
    8201 
    8202 1 model selected 
    8203 Ungrouped to 3 regions 
    8204 
    8205 > select #2.157
    8206 
    8207 1 model selected 
    8208 
    8209 > select add #2.140
    8210 
    8211 2 models selected 
    8212 Grouped 2 regions 
    8213 
    8214 > select add #2.26
    8215 
    8216 2 models selected 
    8217 Grouped 2 regions 
    8218 Opened Rev-CjpflAB-
    8219 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    8220 as #26, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    8221 float32 
    8222 
    8223 The cached device pixel ratio value was stale on window expose. Please file a
    8224 QTBUG which explains how to reproduce. 
    8225 
    8226 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    8227 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    8228 > segment_Aug2420204/Cage.mrc models #26
    8229 
    8230 Opened Rev-CjpflAB-
    8231 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    8232 as #27, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    8233 float32 
    8234 Segmenting Rev-CjpflAB-
    8235 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    8236 density threshold 0.003143 
    8237 Showing 254 region surfaces 
    8238 17052 watershed regions, grouped to 254 regions 
    8239 Showing Rev-CjpflAB-
    8240 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    8241 - 254 regions, 254 surfaces 
    8242 
    8243 > hide #!26 models
    8244 
    8245 > hide #!27 models
    8246 
    8247 > select #2.81
    8248 
    8249 1 model selected 
    8250 
    8251 > select #2.143
    8252 
    8253 1 model selected 
    8254 
    8255 > select add #2.147
    8256 
    8257 2 models selected 
    8258 
    8259 > select add #2.132
    8260 
    8261 3 models selected 
    8262 
    8263 > select subtract #2.132
    8264 
    8265 2 models selected 
    8266 
    8267 > select add #2.210
    8268 
    8269 3 models selected 
    8270 Grouped 3 regions 
    8271 
    8272 > select #2.81
    8273 
    8274 1 model selected 
    8275 
    8276 > select add #2.67
    8277 
    8278 2 models selected 
    8279 
    8280 > select add #2.75
    8281 
    8282 3 models selected 
    8283 
    8284 > select add #2.72
    8285 
    8286 4 models selected 
    8287 
    8288 > select add #2.143
    8289 
    8290 5 models selected 
    8291 
    8292 > select add #2.175
    8293 
    8294 6 models selected 
    8295 Grouped 6 regions 
    8296 
    8297 > select #2.70
    8298 
    8299 1 model selected 
    8300 
    8301 > select add #2.69
    8302 
    8303 2 models selected 
    8304 
    8305 > select add #2.163
    8306 
    8307 3 models selected 
    8308 Ungrouped to 8 regions 
    8309 Ungrouped to 28 regions 
    8310 Ungrouped to 85 regions 
    8311 Ungrouped to 41 regions 
    8312 
    8313 > select #2.67
    8314 
    8315 1 model selected 
    8316 
    8317 > select add #2.334
    8318 
    8319 2 models selected 
    8320 
    8321 > select add #2.333
    8322 
    8323 3 models selected 
    8324 
    8325 > select add #2.335
    8326 
    8327 4 models selected 
    8328 Grouped 4 regions 
    8329 
    8330 > select #2.205
    8331 
    8332 1 model selected 
    8333 
    8334 > select add #2.67
    8335 
    8336 2 models selected 
    8337 Grouped 2 regions 
    8338 
    8339 > select #2.132
    8340 
    8341 1 model selected 
    8342 Ungrouped to 10 regions 
    8343 Ungrouped to 31 regions 
    8344 
    8345 > select #2.391
    8346 
    8347 1 model selected 
    8348 
    8349 > select add #2.392
    8350 
    8351 2 models selected 
    8352 
    8353 > select add #2.340
    8354 
    8355 3 models selected 
    8356 
    8357 > select add #2.341
    8358 
    8359 4 models selected 
    8360 
    8361 > select add #2.405
    8362 
    8363 5 models selected 
    8364 Grouped 5 regions 
    8365 
    8366 > select add #2.4
    8367 
    8368 2 models selected 
    8369 
    8370 > select #2.205
    8371 
    8372 1 model selected 
    8373 
    8374 > select #2.205
    8375 
    8376 1 model selected 
    8377 
    8378 > select add #2.67
    8379 
    8380 2 models selected 
    8381 
    8382 > select add #2.404
    8383 
    8384 3 models selected 
    8385 Grouped 3 regions 
    8386 
    8387 > select #2.67
    8388 
    8389 1 model selected 
    8390 Ungrouped to 3 regions 
    8391 
    8392 > select #2.294
    8393 
    8394 1 model selected 
    8395 
    8396 > select add #2.205
    8397 
    8398 2 models selected 
    8399 Grouped 2 regions 
    8400 
    8401 > select #2.305
    8402 
    8403 1 model selected 
    8404 Ungrouped to 2 regions 
    8405 
    8406 > select #2.205
    8407 
    8408 1 model selected 
    8409 Ungrouped to 4 regions 
    8410 
    8411 > select #2.336
    8412 
    8413 1 model selected 
    8414 Ungrouped to 6 regions 
    8415 
    8416 > select #2.392
    8417 
    8418 1 model selected 
    8419 
    8420 > select add #2.305
    8421 
    8422 2 models selected 
    8423 
    8424 > select add #2.205
    8425 
    8426 3 models selected 
    8427 
    8428 > select #2.205
    8429 
    8430 1 model selected 
    8431 
    8432 > select #2.205
    8433 
    8434 1 model selected 
    8435 
    8436 > select #2.283
    8437 
    8438 1 model selected 
    8439 
    8440 > select add #2.284
    8441 
    8442 2 models selected 
    8443 
    8444 > select add #2.205
    8445 
    8446 3 models selected 
    8447 
    8448 > select subtract #2.205
    8449 
    8450 2 models selected 
    8451 
    8452 > select add #2.305
    8453 
    8454 3 models selected 
    8455 
    8456 > select add #2.392
    8457 
    8458 4 models selected 
    8459 
    8460 > select add #2.205
    8461 
    8462 5 models selected 
    8463 
    8464 > select add #2.5
    8465 
    8466 6 models selected 
    8467 
    8468 > select add #2.362
    8469 
    8470 7 models selected 
    8471 
    8472 > select subtract #2.362
    8473 
    8474 6 models selected 
    8475 
    8476 > select #2.205
    8477 
    8478 1 model selected 
    8479 
    8480 > select #2.5
    8481 
    8482 1 model selected 
    8483 
    8484 > select add #2.205
    8485 
    8486 2 models selected 
    8487 
    8488 > select #2.205
    8489 
    8490 1 model selected 
    8491 
    8492 > select #2.5
    8493 
    8494 1 model selected 
    8495 Ungrouped to 4 regions 
    8496 Ungrouped to 26 regions 
    8497 
    8498 > select #2.417
    8499 
    8500 1 model selected 
    8501 
    8502 > select #2.205
    8503 
    8504 1 model selected 
    8505 
    8506 > select add #2.417
    8507 
    8508 2 models selected 
    8509 
    8510 > select add #2.421
    8511 
    8512 3 models selected 
    8513 Grouped 3 regions 
    8514 
    8515 > select #2.256
    8516 
    8517 1 model selected 
    8518 
    8519 > select add #2.314
    8520 
    8521 2 models selected 
    8522 
    8523 > select subtract #2.314
    8524 
    8525 1 model selected 
    8526 
    8527 > select add #2.205
    8528 
    8529 2 models selected 
    8530 
    8531 > select add #2.392
    8532 
    8533 3 models selected 
    8534 Grouped 3 regions 
    8535 
    8536 > select #2.340
    8537 
    8538 1 model selected 
    8539 
    8540 > select #2.284
    8541 
    8542 1 model selected 
    8543 
    8544 > select add #2.205
    8545 
    8546 2 models selected 
    8547 
    8548 > select #2.39
    8549 
    8550 1 model selected 
    8551 
    8552 > select #2.57
    8553 
    8554 1 model selected 
    8555 
    8556 > select add #2.39
    8557 
    8558 2 models selected 
    8559 
    8560 > select add #2.60
    8561 
    8562 3 models selected 
    8563 
    8564 > select add #2.174
    8565 
    8566 4 models selected 
    8567 
    8568 > select add #2.95
    8569 
    8570 5 models selected 
    8571 
    8572 > select add #2.44
    8573 
    8574 6 models selected 
    8575 
    8576 > select add #2.176
    8577 
    8578 7 models selected 
    8579 
    8580 > select add #2.66
    8581 
    8582 8 models selected 
    8583 
    8584 > select add #2.55
    8585 
    8586 9 models selected 
    8587 
    8588 > select add #2.202
    8589 
    8590 10 models selected 
    8591 
    8592 > select add #2.37
    8593 
    8594 11 models selected 
    8595 
    8596 > select add #2.261
    8597 
    8598 12 models selected 
    8599 
    8600 > select add #2.372
    8601 
    8602 13 models selected 
    8603 
    8604 > select add #2.374
    8605 
    8606 14 models selected 
    8607 
    8608 > select add #2.371
    8609 
    8610 15 models selected 
    8611 
    8612 > select add #2.376
    8613 
    8614 16 models selected 
    8615 
    8616 > select add #2.260
    8617 
    8618 17 models selected 
    8619 
    8620 > select subtract #2.374
    8621 
    8622 16 models selected 
    8623 
    8624 The cached device pixel ratio value was stale on window expose. Please file a
    8625 QTBUG which explains how to reproduce. 
    8626 
    8627 > select add #2.353
    8628 
    8629 17 models selected 
    8630 
    8631 > select add #2.361
    8632 
    8633 18 models selected 
    8634 
    8635 > select add #2.360
    8636 
    8637 19 models selected 
    8638 
    8639 > select add #2.375
    8640 
    8641 20 models selected 
    8642 
    8643 > select add #2.377
    8644 
    8645 21 models selected 
    8646 
    8647 > select add #2.295
    8648 
    8649 22 models selected 
    8650 
    8651 > select add #2.293
    8652 
    8653 23 models selected 
    8654 
    8655 > select add #2.262
    8656 
    8657 24 models selected 
    8658 
    8659 > select add #2.358
    8660 
    8661 25 models selected 
    8662 
    8663 > select add #2.271
    8664 
    8665 26 models selected 
    8666 
    8667 > select add #2.265
    8668 
    8669 27 models selected 
    8670 
    8671 > select add #2.264
    8672 
    8673 28 models selected 
    8674 
    8675 > select add #2.351
    8676 
    8677 29 models selected 
    8678 
    8679 > select add #2.373
    8680 
    8681 30 models selected 
    8682 
    8683 > select add #2.374
    8684 
    8685 31 models selected 
    8686 
    8687 > select add #2.370
    8688 
    8689 32 models selected 
    8690 
    8691 > select add #2.366
    8692 
    8693 33 models selected 
    8694 
    8695 > select add #2.367
    8696 
    8697 34 models selected 
    8698 
    8699 > select add #2.272
    8700 
    8701 35 models selected 
    8702 
    8703 > select add #2.337
    8704 
    8705 36 models selected 
    8706 
    8707 > select add #2.355
    8708 
    8709 37 models selected 
    8710 
    8711 > select add #2.363
    8712 
    8713 38 models selected 
    8714 
    8715 > select add #2.365
    8716 
    8717 39 models selected 
    8718 
    8719 > select add #2.310
    8720 
    8721 40 models selected 
    8722 
    8723 > select add #2.274
    8724 
    8725 41 models selected 
    8726 
    8727 > select add #2.311
    8728 
    8729 42 models selected 
    8730 
    8731 > select add #2.307
    8732 
    8733 43 models selected 
    8734 
    8735 > select add #2.259
    8736 
    8737 44 models selected 
    8738 
    8739 > select add #2.69
    8740 
    8741 45 models selected 
    8742 Grouped 45 regions 
    8743 
    8744 > select add #2.352
    8745 
    8746 2 models selected 
    8747 Grouped 2 regions 
    8748 
    8749 > select add #2.316
    8750 
    8751 2 models selected 
    8752 
    8753 > select add #2.325
    8754 
    8755 3 models selected 
    8756 
    8757 > select add #2.290
    8758 
    8759 4 models selected 
    8760 
    8761 > select add #2.322
    8762 
    8763 5 models selected 
    8764 
    8765 > select add #2.329
    8766 
    8767 6 models selected 
    8768 
    8769 > select add #2.287
    8770 
    8771 7 models selected 
    8772 
    8773 > select add #2.289
    8774 
    8775 8 models selected 
    8776 
    8777 > select add #2.285
    8778 
    8779 9 models selected 
    8780 
    8781 > select add #2.288
    8782 
    8783 10 models selected 
    8784 
    8785 > select add #2.323
    8786 
    8787 11 models selected 
    8788 
    8789 > select add #2.292
    8790 
    8791 12 models selected 
    8792 
    8793 > select add #2.344
    8794 
    8795 13 models selected 
    8796 
    8797 > select add #2.347
    8798 
    8799 14 models selected 
    8800 
    8801 > select add #2.345
    8802 
    8803 15 models selected 
    8804 
    8805 > select add #2.327
    8806 
    8807 16 models selected 
    8808 
    8809 > select add #2.324
    8810 
    8811 17 models selected 
    8812 
    8813 > select add #2.326
    8814 
    8815 18 models selected 
    8816 
    8817 > select add #2.328
    8818 
    8819 19 models selected 
    8820 
    8821 > select add #2.346
    8822 
    8823 20 models selected 
    8824 
    8825 > select add #2.301
    8826 
    8827 21 models selected 
    8828 
    8829 > select add #2.282
    8830 
    8831 22 models selected 
    8832 
    8833 > select add #2.281
    8834 
    8835 23 models selected 
    8836 
    8837 > select add #2.304
    8838 
    8839 24 models selected 
    8840 
    8841 > select add #2.315
    8842 
    8843 25 models selected 
    8844 
    8845 > select add #2.317
    8846 
    8847 26 models selected 
    8848 
    8849 > select add #2.319
    8850 
    8851 27 models selected 
    8852 
    8853 > select add #2.343
    8854 
    8855 28 models selected 
    8856 
    8857 > select add #2.303
    8858 
    8859 29 models selected 
    8860 
    8861 > select add #2.318
    8862 
    8863 30 models selected 
    8864 
    8865 > select add #2.302
    8866 
    8867 31 models selected 
    8868 
    8869 > select add #2.210
    8870 
    8871 32 models selected 
    8872 
    8873 > select add #2.348
    8874 
    8875 33 models selected 
    8876 
    8877 > select add #2.350
    8878 
    8879 34 models selected 
    8880 
    8881 > select add #2.300
    8882 
    8883 35 models selected 
    8884 
    8885 > select add #2.320
    8886 
    8887 36 models selected 
    8888 
    8889 > select add #2.273
    8890 
    8891 37 models selected 
    8892 
    8893 > select add #2.70
    8894 
    8895 38 models selected 
    8896 Grouped 38 regions 
    8897 
    8898 > select add #2.390
    8899 
    8900 2 models selected 
    8901 
    8902 > select add #2.389
    8903 
    8904 3 models selected 
    8905 
    8906 > select add #2.335
    8907 
    8908 4 models selected 
    8909 
    8910 > select add #2.401
    8911 
    8912 5 models selected 
    8913 
    8914 > select add #2.395
    8915 
    8916 6 models selected 
    8917 
    8918 > select add #2.388
    8919 
    8920 7 models selected 
    8921 
    8922 > select add #2.334
    8923 
    8924 8 models selected 
    8925 
    8926 > select add #2.384
    8927 
    8928 9 models selected 
    8929 
    8930 > select add #2.385
    8931 
    8932 10 models selected 
    8933 
    8934 > select add #2.397
    8935 
    8936 11 models selected 
    8937 
    8938 > select add #2.386
    8939 
    8940 12 models selected 
    8941 
    8942 > select add #2.381
    8943 
    8944 13 models selected 
    8945 
    8946 > select add #2.357
    8947 
    8948 14 models selected 
    8949 
    8950 > select add #2.75
    8951 
    8952 15 models selected 
    8953 
    8954 > select add #2.283
    8955 
    8956 16 models selected 
    8957 
    8958 > select add #2.258
    8959 
    8960 17 models selected 
    8961 
    8962 > select add #2.81
    8963 
    8964 18 models selected 
    8965 
    8966 > select add #2.356
    8967 
    8968 19 models selected 
    8969 
    8970 > select add #2.396
    8971 
    8972 20 models selected 
    8973 
    8974 > select add #2.398
    8975 
    8976 21 models selected 
    8977 
    8978 > select add #2.382
    8979 
    8980 22 models selected 
    8981 
    8982 > select add #2.255
    8983 
    8984 23 models selected 
    8985 
    8986 > select add #2.387
    8987 
    8988 24 models selected 
    8989 
    8990 > select add #2.333
    8991 
    8992 25 models selected 
    8993 
    8994 > select add #2.403
    8995 
    8996 26 models selected 
    8997 
    8998 > select add #2.297
    8999 
    9000 27 models selected 
    9001 
    9002 > select add #2.299
    9003 
    9004 28 models selected 
    9005 
    9006 > select add #2.400
    9007 
    9008 29 models selected 
    9009 
    9010 > select add #2.132
    9011 
    9012 30 models selected 
    9013 
    9014 > select add #2.280
    9015 
    9016 31 models selected 
    9017 
    9018 > select add #2.399
    9019 
    9020 32 models selected 
    9021 
    9022 > select add #2.383
    9023 
    9024 33 models selected 
    9025 
    9026 > select add #2.298
    9027 
    9028 34 models selected 
    9029 
    9030 > select add #2.175
    9031 
    9032 35 models selected 
    9033 
    9034 > select add #2.313
    9035 
    9036 36 models selected 
    9037 
    9038 > select add #2.278
    9039 
    9040 37 models selected 
    9041 
    9042 > select add #2.284
    9043 
    9044 38 models selected 
    9045 
    9046 > select add #2.312
    9047 
    9048 39 models selected 
    9049 
    9050 > select add #2.402
    9051 
    9052 40 models selected 
    9053 Grouped 40 regions 
    9054 
    9055 > select #2.68
    9056 
    9057 1 model selected 
    9058 Ungrouped to 3 regions 
    9059 
    9060 > select #2.55
    9061 
    9062 1 model selected 
    9063 
    9064 > select add #2.39
    9065 
    9066 2 models selected 
    9067 
    9068 > select #2.39
    9069 
    9070 1 model selected 
    9071 Ungrouped to 7 regions 
    9072 
    9073 > select #2.68
    9074 
    9075 1 model selected 
    9076 
    9077 > select add #2.66
    9078 
    9079 2 models selected 
    9080 
    9081 > select add #2.69
    9082 
    9083 3 models selected 
    9084 
    9085 > select add #2.216
    9086 
    9087 4 models selected 
    9088 
    9089 > select add #2.55
    9090 
    9091 5 models selected 
    9092 
    9093 > select subtract #2.216
    9094 
    9095 4 models selected 
    9096 
    9097 > select add #2.75
    9098 
    9099 5 models selected 
    9100 Showing 311 region surfaces 
    9101 
    9102 > select add #2.37
    9103 
    9104 6 models selected 
    9105 Grouped 6 regions 
    9106 
    9107 > select #2.44
    9108 
    9109 1 model selected 
    9110 Ungrouped to 3 regions 
    9111 Ungrouped to 10 regions 
    9112 
    9113 > select #2.174
    9114 
    9115 1 model selected 
    9116 
    9117 > select add #2.176
    9118 
    9119 2 models selected 
    9120 
    9121 > select add #2.81
    9122 
    9123 3 models selected 
    9124 
    9125 > select add #2.95
    9126 
    9127 4 models selected 
    9128 
    9129 > select add #2.132
    9130 
    9131 5 models selected 
    9132 
    9133 > select add #2.44
    9134 
    9135 6 models selected 
    9136 Grouped 6 regions 
    9137 Showing 310 region surfaces 
    9138 
    9139 > select add #2.37
    9140 
    9141 2 models selected 
    9142 Grouped 2 regions 
    9143 
    9144 > view orient
    9145 
    9146 > select clear
    9147 
    9148 > select #2.37
    9149 
    9150 1 model selected 
    9151 
    9152 > view sel
    9153 
    9154 No displayed objects specified. 
    9155 
    9156 > ui tool show "Side View"
    9157 
    9158 Opened Rev-CjpflAB-
    9159 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    9160 as #28, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    9161 float32 
    9162 
    9163 The cached device pixel ratio value was stale on window expose. Please file a
    9164 QTBUG which explains how to reproduce. 
    9165 
    9166 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    9167 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    9168 > segment_Aug2420204/PflB-cage.mrc models #28
    9169 
    9170 Opened Rev-CjpflAB-
    9171 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    9172 as #29, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    9173 float32 
    9174 Segmenting Rev-CjpflAB-
    9175 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    9176 density threshold 0.003143 
    9177 Showing 238 region surfaces 
    9178 16400 watershed regions, grouped to 238 regions 
    9179 Showing Rev-CjpflAB-
    9180 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    9181 - 238 regions, 238 surfaces 
    9182 
    9183 > hide #!28 models
    9184 
    9185 > hide #!29 models
    9186 
    9187 > select #2.54
    9188 
    9189 1 model selected 
    9190 
    9191 > select add #2.109
    9192 
    9193 2 models selected 
    9194 
    9195 > select add #2.5
    9196 
    9197 3 models selected 
    9198 
    9199 > select #2.5
    9200 
    9201 1 model selected 
    9202 Ungrouped to 4 regions 
    9203 
    9204 > select #2.239
    9205 
    9206 1 model selected 
    9207 Ungrouped to 10 regions 
    9208 
    9209 > select #2.246
    9210 
    9211 1 model selected 
    9212 
    9213 > select add #2.250
    9214 
    9215 2 models selected 
    9216 
    9217 > select add #2.54
    9218 
    9219 3 models selected 
    9220 
    9221 > select add #2.109
    9222 
    9223 4 models selected 
    9224 Grouped 4 regions 
    9225 
    9226 > select #2.108
    9227 
    9228 1 model selected 
    9229 Ungrouped to 3 regions 
    9230 
    9231 > select #2.246
    9232 
    9233 1 model selected 
    9234 Ungrouped to 11 regions 
    9235 
    9236 > select #2.257
    9237 
    9238 1 model selected 
    9239 Ungrouped to 0 regions 
    9240 
    9241 > select #2.54
    9242 
    9243 1 model selected 
    9244 
    9245 > select add #2.257
    9246 
    9247 2 models selected 
    9248 
    9249 > select #2.54
    9250 
    9251 1 model selected 
    9252 
    9253 > select add #2.57
    9254 
    9255 2 models selected 
    9256 
    9257 > select add #2.117
    9258 
    9259 3 models selected 
    9260 Grouped 3 regions 
    9261 
    9262 > select #2.3
    9263 
    9264 1 model selected 
    9265 Ungrouped to 2 regions 
    9266 
    9267 > select #2.57
    9268 
    9269 1 model selected 
    9270 Ungrouped to 11 regions 
    9271 
    9272 > select #2.263
    9273 
    9274 1 model selected 
    9275 
    9276 > select add #2.54
    9277 
    9278 2 models selected 
    9279 Grouped 2 regions 
    9280 
    9281 > select #2.239
    9282 
    9283 1 model selected 
    9284 Ungrouped to 10 regions 
    9285 
    9286 > select #2.277
    9287 
    9288 1 model selected 
    9289 Ungrouped to 3 regions 
    9290 
    9291 > select #2.279
    9292 
    9293 1 model selected 
    9294 
    9295 > select add #2.239
    9296 
    9297 2 models selected 
    9298 
    9299 > select add #2.54
    9300 
    9301 3 models selected 
    9302 Grouped 3 regions 
    9303 
    9304 > select #2.179
    9305 
    9306 1 model selected 
    9307 
    9308 > select add #2.191
    9309 
    9310 2 models selected 
    9311 
    9312 > select add #2.52
    9313 
    9314 3 models selected 
    9315 Grouped 3 regions 
    9316 
    9317 > select #2.4
    9318 
    9319 1 model selected 
    9320 Ungrouped to 2 regions 
    9321 
    9322 > select #2.191
    9323 
    9324 1 model selected 
    9325 Ungrouped to 23 regions 
    9326 
    9327 > select #2.294
    9328 
    9329 1 model selected 
    9330 
    9331 > select add #2.52
    9332 
    9333 2 models selected 
    9334 
    9335 > select subtract #2.52
    9336 
    9337 1 model selected 
    9338 Grouped 1 regions 
    9339 
    9340 > select add #2.280
    9341 
    9342 2 models selected 
    9343 
    9344 > select add #2.52
    9345 
    9346 3 models selected 
    9347 Grouped 3 regions 
    9348 
    9349 > select #2.286
    9350 
    9351 1 model selected 
    9352 
    9353 > select add #2.52
    9354 
    9355 2 models selected 
    9356 Grouped 2 regions 
    9357 
    9358 > select #2.282
    9359 
    9360 1 model selected 
    9361 Ungrouped to 4 regions 
    9362 Ungrouped to 6 regions 
    9363 Ungrouped to 0 regions 
    9364 
    9365 > select #2.52
    9366 
    9367 1 model selected 
    9368 
    9369 > select add #2.286
    9370 
    9371 2 models selected 
    9372 
    9373 > select add #2.191
    9374 
    9375 3 models selected 
    9376 
    9377 > select subtract #2.286
    9378 
    9379 2 models selected 
    9380 Grouped 2 regions 
    9381 
    9382 > select add #2.54
    9383 
    9384 2 models selected 
    9385 Grouped 2 regions 
    9386 
    9387 > select add #2.63
    9388 
    9389 2 models selected 
    9390 
    9391 > select #2.52
    9392 
    9393 1 model selected 
    9394 Opened Rev-CjpflAB-
    9395 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    9396 as #30, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    9397 float32 
    9398 
    9399 The cached device pixel ratio value was stale on window expose. Please file a
    9400 QTBUG which explains how to reproduce. 
    9401 
    9402 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    9403 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    9404 > segment_Aug2420204/FliL.mrc models #30
    9405 
    9406 Opened Rev-CjpflAB-
    9407 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    9408 as #31, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    9409 float32 
    9410 Segmenting Rev-CjpflAB-
    9411 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    9412 density threshold 0.003143 
    9413 Showing 231 region surfaces 
    9414 16015 watershed regions, grouped to 231 regions 
    9415 Showing Rev-CjpflAB-
    9416 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    9417 - 231 regions, 231 surfaces 
    9418 
    9419 > hide #!30 models
    9420 
    9421 > hide #!31 models
    9422 
    9423 > select #2.14
    9424 
    9425 1 model selected 
    9426 
    9427 > select add #2.36
    9428 
    9429 2 models selected 
    9430 
    9431 > select add #2.169
    9432 
    9433 3 models selected 
    9434 
    9435 > select add #2.67
    9436 
    9437 4 models selected 
    9438 
    9439 > select add #2.78
    9440 
    9441 5 models selected 
    9442 
    9443 > select add #2.159
    9444 
    9445 6 models selected 
    9446 
    9447 > select add #2.156
    9448 
    9449 7 models selected 
    9450 
    9451 > select add #2.37
    9452 
    9453 8 models selected 
    9454 
    9455 > select add #2.60
    9456 
    9457 9 models selected 
    9458 
    9459 > select add #2.199
    9460 
    9461 10 models selected 
    9462 
    9463 > select add #2.88
    9464 
    9465 11 models selected 
    9466 
    9467 > select add #2.151
    9468 
    9469 12 models selected 
    9470 
    9471 > select subtract #2.151
    9472 
    9473 11 models selected 
    9474 
    9475 > select add #2.134
    9476 
    9477 12 models selected 
    9478 
    9479 > select add #2.151
    9480 
    9481 13 models selected 
    9482 
    9483 > select add #2.135
    9484 
    9485 14 models selected 
    9486 
    9487 > select add #2.196
    9488 
    9489 15 models selected 
    9490 
    9491 > select add #2.174
    9492 
    9493 16 models selected 
    9494 
    9495 > select add #2.2
    9496 
    9497 17 models selected 
    9498 
    9499 > select subtract #2.2
    9500 
    9501 16 models selected 
    9502 Drag select of 20552, 20028, 21571, 21632, 21121, 244 of 292 triangles, 21566,
    9503 21499, 20373, 28 of 256 triangles, 16012, 15965 
    9504 Drag select of 21694, 124 of 23904 triangles 
    9505 
    9506 > select subtract #2.93
    9507 
    9508 26 models selected 
    9509 
    9510 > select add #2.193
    9511 
    9512 27 models selected 
    9513 
    9514 The cached device pixel ratio value was stale on window expose. Please file a
    9515 QTBUG which explains how to reproduce. 
    9516 
    9517 > select subtract #2.193
    9518 
    9519 26 models selected 
    9520 Grouped 26 regions 
    9521 
    9522 > select #2.193
    9523 
    9524 1 model selected 
    9525 Ungrouped to 4 regions 
    9526 
    9527 > select clear
    9528 
    9529 > select #2.36
    9530 
    9531 1 model selected 
    9532 
    9533 > select add #2.14
    9534 
    9535 2 models selected 
    9536 
    9537 > select subtract #2.14
    9538 
    9539 1 model selected 
    9540 
    9541 > select add #2.14
    9542 
    9543 2 models selected 
    9544 Grouped 2 regions 
    9545 
    9546 > select #2.10
    9547 
    9548 1 model selected 
    9549 
    9550 > select add #2.14
    9551 
    9552 2 models selected 
    9553 
    9554 > select #2.2
    9555 
    9556 1 model selected 
    9557 
    9558 > select add #2.10
    9559 
    9560 2 models selected 
    9561 Ungrouped to 6 regions 
    9562 Ungrouped to 44 regions 
    9563 
    9564 > select #2.14
    9565 
    9566 1 model selected 
    9567 
    9568 > select add #2.219
    9569 
    9570 2 models selected 
    9571 
    9572 > select add #2.248
    9573 
    9574 3 models selected 
    9575 
    9576 > select add #2.245
    9577 
    9578 4 models selected 
    9579 
    9580 > select subtract #2.245
    9581 
    9582 3 models selected 
    9583 
    9584 > select add #2.231
    9585 
    9586 4 models selected 
    9587 
    9588 > select add #2.245
    9589 
    9590 5 models selected 
    9591 
    9592 > select subtract #2.231
    9593 
    9594 4 models selected 
    9595 
    9596 > select subtract #2.245
    9597 
    9598 3 models selected 
    9599 Opened Rev-CjpflAB-
    9600 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    9601 as #32, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    9602 float32 
    9603 Segmenting Rev-CjpflAB-
    9604 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    9605 density threshold 0.003143 
    9606 Showing 205 region surfaces 
    9607 15312 watershed regions, grouped to 205 regions 
    9608 Showing Rev-CjpflAB-
    9609 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    9610 - 205 regions, 205 surfaces 
    9611 
    9612 > select add #2.99
    9613 
    9614 1 model selected 
    9615 
    9616 > select add #2.87
    9617 
    9618 2 models selected 
    9619 
    9620 > select add #2.122
    9621 
    9622 3 models selected 
    9623 
    9624 > select add #2.127
    9625 
    9626 4 models selected 
    9627 
    9628 > select add #2.142
    9629 
    9630 5 models selected 
    9631 
    9632 > select add #2.156
    9633 
    9634 6 models selected 
    9635 
    9636 > select add #2.124
    9637 
    9638 7 models selected 
    9639 
    9640 > select add #2.67
    9641 
    9642 8 models selected 
    9643 
    9644 > select add #2.114
    9645 
    9646 9 models selected 
    9647 
    9648 > select add #2.49
    9649 
    9650 10 models selected 
    9651 
    9652 > select add #2.107
    9653 
    9654 11 models selected 
    9655 
    9656 > select add #2.128
    9657 
    9658 12 models selected 
    9659 
    9660 > select add #2.157
    9661 
    9662 13 models selected 
    9663 
    9664 > select add #2.175
    9665 
    9666 14 models selected 
    9667 
    9668 > select add #2.126
    9669 
    9670 15 models selected 
    9671 
    9672 > select add #2.133
    9673 
    9674 16 models selected 
    9675 
    9676 > select add #2.144
    9677 
    9678 17 models selected 
    9679 
    9680 > select add #2.131
    9681 
    9682 18 models selected 
    9683 
    9684 > select add #2.136
    9685 
    9686 19 models selected 
    9687 
    9688 > select add #2.161
    9689 
    9690 20 models selected 
    9691 
    9692 > select add #2.105
    9693 
    9694 21 models selected 
    9695 
    9696 > select add #2.162
    9697 
    9698 22 models selected 
    9699 
    9700 > select add #2.165
    9701 
    9702 23 models selected 
    9703 
    9704 > select add #2.154
    9705 
    9706 24 models selected 
    9707 
    9708 > select add #2.85
    9709 
    9710 25 models selected 
    9711 
    9712 > select add #2.84
    9713 
    9714 26 models selected 
    9715 
    9716 > select add #2.120
    9717 
    9718 27 models selected 
    9719 
    9720 > select add #2.94
    9721 
    9722 28 models selected 
    9723 
    9724 > select add #2.130
    9725 
    9726 29 models selected 
    9727 
    9728 > select add #2.163
    9729 
    9730 30 models selected 
    9731 
    9732 > select add #2.21
    9733 
    9734 31 models selected 
    9735 
    9736 > select add #2.18
    9737 
    9738 32 models selected 
    9739 
    9740 > select add #2.174
    9741 
    9742 33 models selected 
    9743 
    9744 > select add #2.17
    9745 
    9746 34 models selected 
    9747 
    9748 > select add #2.11
    9749 
    9750 35 models selected 
    9751 
    9752 > select add #2.14
    9753 
    9754 36 models selected 
    9755 
    9756 > select add #2.12
    9757 
    9758 37 models selected 
    9759 
    9760 > select add #2.115
    9761 
    9762 38 models selected 
    9763 
    9764 > select add #2.132
    9765 
    9766 39 models selected 
    9767 
    9768 > select add #2.159
    9769 
    9770 40 models selected 
    9771 
    9772 > hide #!32 models
    9773 
    9774 > select add #2.112
    9775 
    9776 41 models selected 
    9777 
    9778 > select add #2.147
    9779 
    9780 42 models selected 
    9781 
    9782 > select add #2.96
    9783 
    9784 43 models selected 
    9785 
    9786 > select add #2.36
    9787 
    9788 44 models selected 
    9789 
    9790 > select add #2.76
    9791 
    9792 45 models selected 
    9793 
    9794 > select add #2.81
    9795 
    9796 46 models selected 
    9797 
    9798 > select add #2.103
    9799 
    9800 47 models selected 
    9801 
    9802 > select add #2.71
    9803 
    9804 48 models selected 
    9805 
    9806 > select add #2.56
    9807 
    9808 49 models selected 
    9809 
    9810 > select add #2.92
    9811 
    9812 50 models selected 
    9813 
    9814 > select add #2.43
    9815 
    9816 51 models selected 
    9817 
    9818 > select #2.99
    9819 
    9820 1 model selected 
    9821 
    9822 > select #2.99
    9823 
    9824 1 model selected 
    9825 
    9826 > select add #2.87
    9827 
    9828 2 models selected 
    9829 
    9830 > select add #2.122
    9831 
    9832 3 models selected 
    9833 
    9834 > select add #2.127
    9835 
    9836 4 models selected 
    9837 
    9838 > select add #2.142
    9839 
    9840 5 models selected 
    9841 
    9842 > select add #2.156
    9843 
    9844 6 models selected 
    9845 
    9846 > select add #2.124
    9847 
    9848 7 models selected 
    9849 
    9850 > select add #2.67
    9851 
    9852 8 models selected 
    9853 
    9854 > select add #2.114
    9855 
    9856 9 models selected 
    9857 
    9858 > select add #2.49
    9859 
    9860 10 models selected 
    9861 
    9862 > select add #2.107
    9863 
    9864 11 models selected 
    9865 
    9866 > select add #2.128
    9867 
    9868 12 models selected 
    9869 
    9870 > select add #2.157
    9871 
    9872 13 models selected 
    9873 
    9874 > select add #2.175
    9875 
    9876 14 models selected 
    9877 
    9878 > select add #2.126
    9879 
    9880 15 models selected 
    9881 
    9882 > select add #2.133
    9883 
    9884 16 models selected 
    9885 
    9886 > select add #2.144
    9887 
    9888 17 models selected 
    9889 
    9890 > select add #2.131
    9891 
    9892 18 models selected 
    9893 
    9894 > select add #2.136
    9895 
    9896 19 models selected 
    9897 
    9898 > select add #2.161
    9899 
    9900 20 models selected 
    9901 
    9902 > select add #2.105
    9903 
    9904 21 models selected 
    9905 
    9906 > select add #2.162
    9907 
    9908 22 models selected 
    9909 
    9910 > select add #2.165
    9911 
    9912 23 models selected 
    9913 
    9914 > select add #2.154
    9915 
    9916 24 models selected 
    9917 
    9918 > select add #2.85
    9919 
    9920 25 models selected 
    9921 
    9922 > select add #2.84
    9923 
    9924 26 models selected 
    9925 
    9926 > select add #2.120
    9927 
    9928 27 models selected 
    9929 
    9930 > select add #2.94
    9931 
    9932 28 models selected 
    9933 
    9934 > select add #2.163
    9935 
    9936 29 models selected 
    9937 
    9938 > select add #2.130
    9939 
    9940 30 models selected 
    9941 
    9942 > select add #2.21
    9943 
    9944 31 models selected 
    9945 
    9946 > select add #2.18
    9947 
    9948 32 models selected 
    9949 
    9950 > select add #2.174
    9951 
    9952 33 models selected 
    9953 
    9954 > select add #2.17
    9955 
    9956 34 models selected 
    9957 
    9958 > select add #2.11
    9959 
    9960 35 models selected 
    9961 
    9962 > select add #2.14
    9963 
    9964 36 models selected 
    9965 
    9966 > select add #2.12
    9967 
    9968 37 models selected 
    9969 
    9970 > select subtract #2.12
    9971 
    9972 36 models selected 
    9973 
    9974 > select add #2.12
    9975 
    9976 37 models selected 
    9977 
    9978 > select add #2.115
    9979 
    9980 38 models selected 
    9981 
    9982 > select add #2.132
    9983 
    9984 39 models selected 
    9985 
    9986 > select add #2.159
    9987 
    9988 40 models selected 
    9989 Grouped 40 regions 
    9990 
    9991 > select #2.11
    9992 
    9993 1 model selected 
    9994 
    9995 > select #2.56
    9996 
    9997 1 model selected 
    9998 
    9999 > select add #2.92
    10000 
    10001 2 models selected 
    10002 
    10003 > select add #2.68
    10004 
    10005 3 models selected 
    10006 
    10007 > select add #2.118
    10008 
    10009 4 models selected 
    10010 
    10011 > select add #2.63
    10012 
    10013 5 models selected 
    10014 
    10015 > select add #2.91
    10016 
    10017 6 models selected 
    10018 Grouped 6 regions 
    10019 
    10020 > select #2.184
    10021 
    10022 1 model selected 
    10023 
    10024 > select add #2.103
    10025 
    10026 2 models selected 
    10027 
    10028 > select add #2.198
    10029 
    10030 3 models selected 
    10031 
    10032 > select add #2.185
    10033 
    10034 4 models selected 
    10035 
    10036 > select add #2.197
    10037 
    10038 5 models selected 
    10039 
    10040 > select add #2.195
    10041 
    10042 6 models selected 
    10043 
    10044 > select add #2.76
    10045 
    10046 7 models selected 
    10047 
    10048 > select add #2.112
    10049 
    10050 8 models selected 
    10051 
    10052 > select add #2.147
    10053 
    10054 9 models selected 
    10055 
    10056 > select add #2.96
    10057 
    10058 10 models selected 
    10059 
    10060 > select add #2.12
    10061 
    10062 11 models selected 
    10063 Grouped 11 regions 
    10064 
    10065 > select #2.81
    10066 
    10067 1 model selected 
    10068 
    10069 > select add #2.12
    10070 
    10071 2 models selected 
    10072 Showing 151 region surfaces 
    10073 
    10074 > select add #2.11
    10075 
    10076 3 models selected 
    10077 Grouped 3 regions 
    10078 
    10079 > select #2.43
    10080 
    10081 1 model selected 
    10082 
    10083 > select add #2.31
    10084 
    10085 2 models selected 
    10086 Ungrouped to 4 regions 
    10087 
    10088 > select #2.12
    10089 
    10090 1 model selected 
    10091 
    10092 > select add #2.18
    10093 
    10094 2 models selected 
    10095 
    10096 > select subtract #2.18
    10097 
    10098 1 model selected 
    10099 
    10100 > select #2.71
    10101 
    10102 1 model selected 
    10103 Ungrouped to 2 regions 
    10104 Ungrouped to 18 regions 
    10105 
    10106 > select #2.99
    10107 
    10108 1 model selected 
    10109 
    10110 > select add #2.103
    10111 
    10112 2 models selected 
    10113 
    10114 > select add #2.94
    10115 
    10116 3 models selected 
    10117 
    10118 > select add #2.68
    10119 
    10120 4 models selected 
    10121 
    10122 > select add #2.43
    10123 
    10124 5 models selected 
    10125 
    10126 > select add #2.91
    10127 
    10128 6 models selected 
    10129 
    10130 > select add #2.63
    10131 
    10132 7 models selected 
    10133 
    10134 > select add #2.92
    10135 
    10136 8 models selected 
    10137 
    10138 > select add #2.87
    10139 
    10140 9 models selected 
    10141 
    10142 > select add #2.85
    10143 
    10144 10 models selected 
    10145 
    10146 > select add #2.67
    10147 
    10148 11 models selected 
    10149 
    10150 > select subtract #2.67
    10151 
    10152 10 models selected 
    10153 
    10154 > select add #2.56
    10155 
    10156 11 models selected 
    10157 
    10158 > select add #2.84
    10159 
    10160 12 models selected 
    10161 
    10162 > select add #2.49
    10163 
    10164 13 models selected 
    10165 
    10166 > select add #2.71
    10167 
    10168 14 models selected 
    10169 
    10170 > select add #2.12
    10171 
    10172 15 models selected 
    10173 
    10174 > select add #2.67
    10175 
    10176 16 models selected 
    10177 
    10178 > select add #2.81
    10179 
    10180 17 models selected 
    10181 Grouped 17 regions 
    10182 
    10183 > select #2.36
    10184 
    10185 1 model selected 
    10186 Ungrouped to 4 regions 
    10187 
    10188 > select #2.43
    10189 
    10190 1 model selected 
    10191 
    10192 > select add #2.49
    10193 
    10194 2 models selected 
    10195 
    10196 > select add #2.12
    10197 
    10198 3 models selected 
    10199 Grouped 3 regions 
    10200 
    10201 > select #2.39
    10202 
    10203 1 model selected 
    10204 
    10205 > select add #2.41
    10206 
    10207 2 models selected 
    10208 Ungrouped to 4 regions 
    10209 
    10210 > select #2.36
    10211 
    10212 1 model selected 
    10213 
    10214 > select add #2.56
    10215 
    10216 2 models selected 
    10217 Ungrouped to 15 regions 
    10218 
    10219 > select #2.39
    10220 
    10221 1 model selected 
    10222 
    10223 > select add #2.41
    10224 
    10225 2 models selected 
    10226 
    10227 > select add #2.68
    10228 
    10229 3 models selected 
    10230 
    10231 > select add #2.94
    10232 
    10233 4 models selected 
    10234 
    10235 > select add #2.85
    10236 
    10237 5 models selected 
    10238 
    10239 > select add #2.91
    10240 
    10241 6 models selected 
    10242 
    10243 > select add #2.87
    10244 
    10245 7 models selected 
    10246 
    10247 > select add #2.84
    10248 
    10249 8 models selected 
    10250 
    10251 > select add #2.12
    10252 
    10253 9 models selected 
    10254 Grouped 9 regions 
    10255 
    10256 > select #2.40
    10257 
    10258 1 model selected 
    10259 
    10260 > select add #2.37
    10261 
    10262 2 models selected 
    10263 Ungrouped to 6 regions 
    10264 Ungrouped to 39 regions 
    10265 
    10266 > select #2.142
    10267 
    10268 1 model selected 
    10269 
    10270 > select subtract #2.142
    10271 
    10272 Nothing selected 
    10273 
    10274 > select add #2.136
    10275 
    10276 1 model selected 
    10277 
    10278 > select add #2.120
    10279 
    10280 2 models selected 
    10281 
    10282 > select add #2.115
    10283 
    10284 3 models selected 
    10285 
    10286 > select add #2.195
    10287 
    10288 4 models selected 
    10289 
    10290 > select add #2.118
    10291 
    10292 5 models selected 
    10293 
    10294 > select add #2.133
    10295 
    10296 6 models selected 
    10297 
    10298 > select add #2.144
    10299 
    10300 7 models selected 
    10301 
    10302 > select add #2.142
    10303 
    10304 8 models selected 
    10305 
    10306 > select add #2.157
    10307 
    10308 9 models selected 
    10309 
    10310 > select add #2.130
    10311 
    10312 10 models selected 
    10313 
    10314 > select add #2.156
    10315 
    10316 11 models selected 
    10317 
    10318 > select add #2.131
    10319 
    10320 12 models selected 
    10321 
    10322 > select add #2.154
    10323 
    10324 13 models selected 
    10325 
    10326 > select add #2.147
    10327 
    10328 14 models selected 
    10329 
    10330 > select add #2.159
    10331 
    10332 15 models selected 
    10333 
    10334 > select add #2.132
    10335 
    10336 16 models selected 
    10337 
    10338 > select add #2.12
    10339 
    10340 17 models selected 
    10341 
    10342 > select add #2.96
    10343 
    10344 18 models selected 
    10345 Grouped 18 regions 
    10346 
    10347 > select #2.18
    10348 
    10349 1 model selected 
    10350 
    10351 > select #2.18
    10352 
    10353 1 model selected 
    10354 Ungrouped to 5 regions 
    10355 
    10356 > select #2.36
    10357 
    10358 1 model selected 
    10359 
    10360 The cached device pixel ratio value was stale on window expose. Please file a
    10361 QTBUG which explains how to reproduce. 
    10362 
    10363 Showing 184 region surfaces 
    10364 
    10365 > select #2.11
    10366 
    10367 1 model selected 
    10368 
    10369 > select add #2.12
    10370 
    10371 2 models selected 
    10372 
    10373 > select add #2.36
    10374 
    10375 3 models selected 
    10376 
    10377 > select add #2.199
    10378 
    10379 4 models selected 
    10380 
    10381 > select add #2.190
    10382 
    10383 5 models selected 
    10384 
    10385 > select add #2.196
    10386 
    10387 6 models selected 
    10388 
    10389 > select add #2.200
    10390 
    10391 7 models selected 
    10392 
    10393 > select add #2.187
    10394 
    10395 8 models selected 
    10396 
    10397 > select add #2.191
    10398 
    10399 9 models selected 
    10400 
    10401 > select add #2.201
    10402 
    10403 10 models selected 
    10404 Grouped 10 regions 
    10405 
    10406 > select add #2.194
    10407 
    10408 2 models selected 
    10409 Grouped 2 regions 
    10410 
    10411 > select #2.9
    10412 
    10413 1 model selected 
    10414 Ungrouped to 17 regions 
    10415 Showing 190 region surfaces 
    10416 
    10417 > select #2.11
    10418 
    10419 1 model selected 
    10420 
    10421 > select #2.120
    10422 
    10423 1 model selected 
    10424 
    10425 > select add #2.36
    10426 
    10427 2 models selected 
    10428 
    10429 > select add #2.96
    10430 
    10431 3 models selected 
    10432 
    10433 > select add #2.11
    10434 
    10435 4 models selected 
    10436 Grouped 4 regions 
    10437 
    10438 > select add #2.193
    10439 
    10440 2 models selected 
    10441 
    10442 > select add #2.188
    10443 
    10444 3 models selected 
    10445 Grouped 3 regions 
    10446 
    10447 > select #2.14
    10448 
    10449 1 model selected 
    10450 
    10451 > select #2.17
    10452 
    10453 1 model selected 
    10454 Ungrouped to 5 regions 
    10455 Ungrouped to 28 regions 
    10456 
    10457 > select #2.187
    10458 
    10459 1 model selected 
    10460 
    10461 > select add #2.190
    10462 
    10463 2 models selected 
    10464 
    10465 > select add #2.188
    10466 
    10467 3 models selected 
    10468 
    10469 > select add #2.159
    10470 
    10471 4 models selected 
    10472 Grouped 4 regions 
    10473 Showing 209 region surfaces 
    10474 
    10475 > select add #2.9
    10476 
    10477 2 models selected 
    10478 Grouped 2 regions 
    10479 
    10480 > select #2.45
    10481 
    10482 1 model selected 
    10483 Ungrouped to 2 regions 
    10484 
    10485 > select #2.36
    10486 
    10487 1 model selected 
    10488 
    10489 > select #2.36
    10490 
    10491 1 model selected 
    10492 Ungrouped to 3 regions 
    10493 Ungrouped to 16 regions 
    10494 
    10495 > select #2.36
    10496 
    10497 1 model selected 
    10498 
    10499 > select add #2.219
    10500 
    10501 2 models selected 
    10502 Grouped 2 regions 
    10503 
    10504 > select #2.11
    10505 
    10506 1 model selected 
    10507 Ungrouped to 4 regions 
    10508 Ungrouped to 24 regions 
    10509 
    10510 > select #2.36
    10511 
    10512 1 model selected 
    10513 
    10514 > select add #2.229
    10515 
    10516 2 models selected 
    10517 
    10518 > select add #2.228
    10519 
    10520 3 models selected 
    10521 
    10522 > select add #2.230
    10523 
    10524 4 models selected 
    10525 Grouped 4 regions 
    10526 Showing 243 region surfaces 
    10527 
    10528 > select add #2.9
    10529 
    10530 2 models selected 
    10531 Grouped 2 regions 
    10532 
    10533 > select clear
    10534 
    10535 > select #2.175
    10536 
    10537 1 model selected 
    10538 
    10539 > select add #2.174
    10540 
    10541 2 models selected 
    10542 
    10543 > select add #2.20
    10544 
    10545 3 models selected 
    10546 Ungrouped to 22 regions 
    10547 Ungrouped to 71 regions 
    10548 
    10549 > select #2.276
    10550 
    10551 1 model selected 
    10552 
    10553 > select add #2.275
    10554 
    10555 2 models selected 
    10556 
    10557 > select add #2.274
    10558 
    10559 3 models selected 
    10560 
    10561 > select add #2.262
    10562 
    10563 4 models selected 
    10564 
    10565 > select add #2.114
    10566 
    10567 5 models selected 
    10568 
    10569 > select add #2.329
    10570 
    10571 6 models selected 
    10572 Grouped 6 regions 
    10573 
    10574 > select add #2.271
    10575 
    10576 2 models selected 
    10577 
    10578 > select add #2.263
    10579 
    10580 3 models selected 
    10581 
    10582 > select add #2.20
    10583 
    10584 4 models selected 
    10585 
    10586 > select add #2.174
    10587 
    10588 5 models selected 
    10589 
    10590 > select add #2.290
    10591 
    10592 6 models selected 
    10593 
    10594 > select add #2.284
    10595 
    10596 7 models selected 
    10597 
    10598 > select add #2.283
    10599 
    10600 8 models selected 
    10601 
    10602 > select add #2.279
    10603 
    10604 9 models selected 
    10605 
    10606 > select add #2.268
    10607 
    10608 10 models selected 
    10609 
    10610 > select add #2.326
    10611 
    10612 11 models selected 
    10613 
    10614 > select add #2.277
    10615 
    10616 12 models selected 
    10617 
    10618 > select add #2.272
    10619 
    10620 13 models selected 
    10621 
    10622 > select add #2.273
    10623 
    10624 14 models selected 
    10625 
    10626 > select add #2.317
    10627 
    10628 15 models selected 
    10629 
    10630 > select add #2.289
    10631 
    10632 16 models selected 
    10633 
    10634 > select add #2.228
    10635 
    10636 17 models selected 
    10637 
    10638 > select add #2.280
    10639 
    10640 18 models selected 
    10641 
    10642 > select add #2.126
    10643 
    10644 19 models selected 
    10645 
    10646 > select add #2.124
    10647 
    10648 20 models selected 
    10649 
    10650 > select subtract #2.124
    10651 
    10652 19 models selected 
    10653 Grouped 19 regions 
    10654 
    10655 > select #2.124
    10656 
    10657 1 model selected 
    10658 Ungrouped to 10 regions 
    10659 
    10660 > select #2.126
    10661 
    10662 1 model selected 
    10663 
    10664 > select add #2.20
    10665 
    10666 2 models selected 
    10667 Grouped 2 regions 
    10668 
    10669 > select add #2.118
    10670 
    10671 2 models selected 
    10672 Showing 304 region surfaces 
    10673 
    10674 > select add #2.9
    10675 
    10676 3 models selected 
    10677 Grouped 3 regions 
    10678 Opened Rev-CjpflAB-
    10679 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    10680 as #33, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    10681 float32 
    10682 
    10683 The cached device pixel ratio value was stale on window expose. Please file a
    10684 QTBUG which explains how to reproduce. 
    10685 
    10686 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10687 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10688 > segment_Aug2420204/Cyt-components.mrc models #33
    10689 
    10690 Opened Rev-CjpflAB-
    10691 mask-L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    10692 as #34, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at step 1, values
    10693 float32 
    10694 
    10695 > hide #!33 models
    10696 
    10697 > hide #!2 models
    10698 
    10699 The cached device pixel ratio value was stale on window expose. Please file a
    10700 QTBUG which explains how to reproduce. 
    10701 
    10702 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10703 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10704 > segment_Aug2420204/IM.mrc models #34
    10705 
    10706 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10707 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10708 > segment_Aug2420204/Segmentation2.cxs includeMaps true
    10709 
    10710 > close session
    10711 
    10712 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10713 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10714 > segment_Aug2420204/IM.mrc
    10715 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10716 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10717 > segment_Aug2420204/Cyt-components.mrc
    10718 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10719 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10720 > segment_Aug2420204/FliL.mrc
    10721 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10722 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10723 > segment_Aug2420204/PflB-cage.mrc
    10724 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10725 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10726 > segment_Aug2420204/Cage.mrc
    10727 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10728 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10729 > segment_Aug2420204/FlgY-PflA.mrc
    10730 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10731 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10732 > segment_Aug2420204/MS-ring.mrc
    10733 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10734 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10735 > segment_Aug2420204/Artifact3.mrc
    10736 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10737 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10738 > segment_Aug2420204/MotBpg.mrc
    10739 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10740 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10741 > segment_Aug2420204/Artifacts2.mrc
    10742 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10743 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10744 > segment_Aug2420204/PflC-PflD.mrc
    10745 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10746 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10747 > segment_Aug2420204/Basal-Disk.mrc
    10748 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10749 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10750 > segment_Aug2420204/OM.mrc
    10751 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10752 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10753 > segment_Aug2420204/LP-ring.mrc
    10754 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10755 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10756 > segment_Aug2420204/Artifact1.mrc
    10757 > /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    10758 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    10759 > segment_Aug2420204/Rod.mrc
    10760 
    10761 Opened IM.mrc as #1.1, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    10762 level 0.0246, step 1, values float32 
    10763 Opened Cyt-components.mrc as #1.2, grid size 220,250,200, pixel
    10764 2.15,2.15,2.15, shown at level 0.0159, step 1, values float32 
    10765 Opened FliL.mrc as #1.3, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    10766 level 0.0029, step 1, values float32 
    10767 Opened PflB-cage.mrc as #1.4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10768 shown at level 0.0105, step 1, values float32 
    10769 Opened Cage.mrc as #1.5, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    10770 level 0.00285, step 1, values float32 
    10771 Opened FlgY-PflA.mrc as #1.6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10772 shown at level 0.0231, step 1, values float32 
    10773 Opened MS-ring.mrc as #1.7, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    10774 at level 0.00313, step 1, values float32 
    10775 Opened Artifact3.mrc as #1.8, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10776 shown at level 0.0028, step 1, values float32 
    10777 Opened MotBpg.mrc as #1.9, grid size 220,250,200, pixel 2.15,2.15,2.15, shown
    10778 at level 0.00284, step 1, values float32 
    10779 Opened Artifacts2.mrc as #1.10, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10780 shown at level 0.00286, step 1, values float32 
    10781 Opened PflC-PflD.mrc as #1.11, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10782 shown at level 0.0453, step 1, values float32 
    10783 Opened Basal-Disk.mrc as #1.12, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10784 shown at level 0.0237, step 1, values float32 
    10785 Opened OM.mrc as #1.13, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    10786 level 0.00412, step 1, values float32 
    10787 Opened LP-ring.mrc as #1.14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10788 shown at level 0.0134, step 1, values float32 
    10789 Opened Artifact1.mrc as #1.15, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10790 shown at level 0.00301, step 1, values float32 
    10791 Opened Rod.mrc as #1.16, grid size 220,250,200, pixel 2.15,2.15,2.15, shown at
    10792 level 0.00577, step 1, values float32 
    10793 
    10794 > hide #!1.2 models
    10795 
    10796 > hide #!1.8 models
    10797 
    10798 > hide #!1.10 models
    10799 
    10800 > hide #!1.12 models
    10801 
    10802 > hide #!1.13 models
    10803 
    10804 > hide #!1.14 models
    10805 
    10806 > show #!1.14 models
    10807 
    10808 > hide #!1.11 models
    10809 
    10810 > show #!1.11 models
    10811 
    10812 > hide #!1.5 models
    10813 
    10814 > show #!1.5 models
    10815 
    10816 > hide #!1.15 models
    10817 
    10818 > show #!1.12 models
    10819 
    10820 The cached device pixel ratio value was stale on window expose. Please file a
    10821 QTBUG which explains how to reproduce. 
    10822 
    10823 > volume #1.4 level 0.0029
    10824 
    10825 > volume #1.5 level 0.0029
    10826 
    10827 > volume #1.6 level 0.0029
    10828 
    10829 > volume #1.7 level 0.0029
    10830 
    10831 > volume #1.8 level 0.0029
    10832 
    10833 > volume #1.9 level 0.0029
    10834 
    10835 > volume #1.10 level 0.0029
    10836 
    10837 > volume #1.11 level 0.0029
    10838 
    10839 > volume #1.12 level 0.0029
    10840 
    10841 > volume #1.13 level 0.0029
    10842 
    10843 > volume #1.14 level 0.0029
    10844 
    10845 > volume #1.15 level 0.0029
    10846 
    10847 > volume #1.16 level 0.0029
    10848 
    10849 > volume gaussian #1 sDev ２
    10850 
    10851 Opened IM.mrc gaussian as #2, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10852 shown at step 1, values float32 
    10853 Opened Cyt-components.mrc gaussian as #3, grid size 220,250,200, pixel
    10854 2.15,2.15,2.15, shown at step 1, values float32 
    10855 Opened FliL.mrc gaussian as #4, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10856 shown at step 1, values float32 
    10857 Opened PflB-cage.mrc gaussian as #5, grid size 220,250,200, pixel
    10858 2.15,2.15,2.15, shown at step 1, values float32 
    10859 Opened Cage.mrc gaussian as #6, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10860 shown at step 1, values float32 
    10861 Opened FlgY-PflA.mrc gaussian as #7, grid size 220,250,200, pixel
    10862 2.15,2.15,2.15, shown at step 1, values float32 
    10863 Opened MS-ring.mrc gaussian as #8, grid size 220,250,200, pixel
    10864 2.15,2.15,2.15, shown at step 1, values float32 
    10865 Opened Artifact3.mrc gaussian as #9, grid size 220,250,200, pixel
    10866 2.15,2.15,2.15, shown at step 1, values float32 
    10867 Opened MotBpg.mrc gaussian as #10, grid size 220,250,200, pixel
    10868 2.15,2.15,2.15, shown at step 1, values float32 
    10869 Opened Artifacts2.mrc gaussian as #11, grid size 220,250,200, pixel
    10870 2.15,2.15,2.15, shown at step 1, values float32 
    10871 Opened PflC-PflD.mrc gaussian as #12, grid size 220,250,200, pixel
    10872 2.15,2.15,2.15, shown at step 1, values float32 
    10873 Opened Basal-Disk.mrc gaussian as #13, grid size 220,250,200, pixel
    10874 2.15,2.15,2.15, shown at step 1, values float32 
    10875 Opened OM.mrc gaussian as #14, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10876 shown at step 1, values float32 
    10877 Opened LP-ring.mrc gaussian as #15, grid size 220,250,200, pixel
    10878 2.15,2.15,2.15, shown at step 1, values float32 
    10879 Opened Artifact1.mrc gaussian as #16, grid size 220,250,200, pixel
    10880 2.15,2.15,2.15, shown at step 1, values float32 
    10881 Opened Rod.mrc gaussian as #17, grid size 220,250,200, pixel 2.15,2.15,2.15,
    10882 shown at step 1, values float32 
    10883 
    10884 > volume #2 level 0.0029
    10885 
    10886 > volume #3 level 0.0029
    10887 
    10888 > volume #4 level 0.0029
    10889 
    10890 > volume #5 level 0.0029
    10891 
    10892 > volume #6 level 0.0029
    10893 
    10894 > volume #8 level 0.0029
    10895 
    10896 > volume #9 level 0.0029
    10897 
    10898 > volume #10 level 0.0029
    10899 
    10900 > volume #11 level 0.0029
    10901 
    10902 The cached device pixel ratio value was stale on window expose. Please file a
    10903 QTBUG which explains how to reproduce. 
    10904 
    10905 > volume #12 level 0.0029
    10906 
    10907 > volume #13 level 0.0029
    10908 
    10909 > volume #14 level 0.0029
    10910 
    10911 > volume #15 level 0.0029
    10912 
    10913 > volume #16 level 0.0029
    10914 
    10915 > volume #17 level 0.0029
    10916 
    10917 > volume #13 level 0.01497
    10918 
    10919 > color #13 #727272ff models
    10920 
    10921 > lighting soft
    10922 
    10923 > set bgColor white
    10924 
    10925 > color #12 #727272ff models
    10926 
    10927 > color #6 #52cdd6ff models
    10928 
    10929 > color #6 #4a9ed2ff models
    10930 
    10931 > color #10 #905d12ff modelsmodels
    10932 
    10933 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    10934 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    10935 
    10936 > color #10 #905d12ff models
    10937 
    10938 > ui tool show "Surface Color"
    10939 
    10940 The cached device pixel ratio value was stale on window expose. Please file a
    10941 QTBUG which explains how to reproduce. 
    10942 
    10943 [Repeated 1 time(s)]
    10944 
    10945 > color radial #7.1 palette #ff0000:#ffffff:#0000ff
    10946 
    10947 > color radial #7.1 palette #ff69f5:#ffffff:#ff1e17
    10948 
    10949 > color radial #7.1 palette #ff69f5:#faceff:#ff1e17
    10950 
    10951 [Repeated 1 time(s)]
    10952 
    10953 > color radial #7.1 palette 229.5,#ff69f5:309.9,#faceff:590.3,#ff1e17
    10954 
    10955 > color radial #7.1 palette 229.5,#f333ff:309.9,#faceff:590.3,#ff1e17
    10956 
    10957 [Repeated 1 time(s)]
    10958 
    10959 > color radial #7.1 palette 229.5,#f333ff:309.9,#fc73ff:590.3,#ff1e17
    10960 
    10961 > color radial #7.1 palette 229.5,#f333ff:309.9,#fc73ff:490.3,#ff1e17
    10962 
    10963 > color radial #7.1 palette 229.5,#f333ff:309.9,#eb21ff:490.3,#ff1e17
    10964 
    10965 > color radial #7.1 palette 229.5,#f333ff:409.9,#eb21ff:490.3,#ff1e17
    10966 
    10967 > color radial #7.1 palette 229.5,#f333ff:409.9,#ffa0fe:490.3,#ff1e17
    10968 
    10969 > color radial #7.1 palette 229.5,#f333ff:359.9,#ffa0fe:490.3,#ff1e17
    10970 
    10971 > color radial #7.1 palette 329.5,#f333ff:359.9,#ffa0fe:490.3,#ff1e17
    10972 
    10973 > color #2 #bdbdbdff models
    10974 
    10975 > color #4 #b7a359ff models
    10976 
    10977 > color #5 magenta models
    10978 
    10979 > hide #!5 models
    10980 
    10981 > show #!5 models
    10982 
    10983 > color #5 #ff77f7ff models
    10984 
    10985 > color #5 #ff5eeaff models
    10986 
    10987 > color #8 #5da36dff models
    10988 
    10989 > color #15 #92aa93ff models
    10990 
    10991 > color #17 #727272ff models
    10992 
    10993 > color radial #5.1 palette #f333ff:#ffa0fe:#ff1e17
    10994 
    10995 > color radial #5.1 palette 281.4,#ff40ff:450.7,#ff40ff:619.9,#797979
    10996 
    10997 The cached device pixel ratio value was stale on window expose. Please file a
    10998 QTBUG which explains how to reproduce. 
    10999 
    11000 > color radial #5.1 palette #ff40ff:#ff40ff
    11001 
    11002 > color radial #5.1 palette 281.4,#ff40ff:619.9,#797979
    11003 
    11004 > key #ff40ff:281 #797979:620 showTool true
    11005 
    11006 > ui mousemode right "color key"
    11007 
    11008 The cached device pixel ratio value was stale on window expose. Please file a
    11009 QTBUG which explains how to reproduce. 
    11010 
    11011 > key #ff40ff:281 #797979:620 showTool true
    11012 
    11013 [Repeated 1 time(s)]
    11014 
    11015 The cached device pixel ratio value was stale on window expose. Please file a
    11016 QTBUG which explains how to reproduce. 
    11017 
    11018 > ui dockable false "Surface Color"
    11019 
    11020 Window position QRect(1224,1261 1291x284) outside any known screen, using
    11021 primary screen 
    11022 
    11023 > key #ff40ff:281 #797979:620 showTool true
    11024 
    11025 > color single #5.1
    11026 
    11027 [Repeated 1 time(s)]
    11028 
    11029 > color radial #5.1 palette 281.4,#ff40ff:619.9,#797979
    11030 
    11031 > color single #5.1
    11032 
    11033 Fetching compressed palette hideTool from
    11034 https://www.colourlovers.com/api/palettes?keywords=hideTool&format=json&numResults=100 
    11035 
    11036 > key #ff40ff:281 #797979:620 hideTool true
    11037 
    11038 Expected a keyword 
    11039 
    11040 > hide #18 models
    11041 
    11042 > close #18
    11043 
    11044 > ui mousemode right translate
    11045 
    11046 > color #12 #72727259 models
    11047 
    11048 > color #13 #72727259 models
    11049 
    11050 > color #6 #72727259 models
    11051 
    11052 > color #5 #72727259 models
    11053 
    11054 > color #10 #72727259 models
    11055 
    11056 > lighting full
    11057 
    11058 > lighting soft
    11059 
    11060 > color #4 #72727259 models
    11061 
    11062 > color #7 #72727259 models
    11063 
    11064 > close #9
    11065 
    11066 > close #3
    11067 
    11068 > close #11
    11069 
    11070 > close #14
    11071 
    11072 > close #16
    11073 
    11074 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11075 > manuscript/Start_Aug_2024/CJ_FlgV_ST/CJ-PflB-PflAnC17.pdb
    11076 
    11077 Summary of feedback from opening
    11078 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11079 manuscript/Start_Aug_2024/CJ_FlgV_ST/CJ-PflB-PflAnC17.pdb 
    11080 --- 
    11081 warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 169 ASP C 182 1 14 
    11082 Start residue of secondary structure not found: HELIX 2 2 TYR C 186 ARG C 199
    11083 1 14 
    11084 Start residue of secondary structure not found: HELIX 3 3 THR C 206 TYR C 221
    11085 1 16 
    11086 Start residue of secondary structure not found: HELIX 4 4 GLN C 230 THR C 246
    11087 1 17 
    11088 Start residue of secondary structure not found: HELIX 5 5 PHE C 253 ALA C 266
    11089 1 14 
    11090 607 messages similar to the above omitted 
    11091  
    11092 Chain information for CJ-PflB-PflAnC17.pdb 
    11093 --- 
    11094 Chain | Description 
    11095 3.1/A 3.2/A 3.3/A 3.4/A 3.5/A 3.6/A 3.7/A 3.8/A 3.9/A 3.10/A 3.11/A 3.12/A 3.13/A 3.14/A 3.15/A 3.16/A 3.17/A | No description available 
    11096 3.1/C 3.2/C 3.3/C 3.4/C 3.5/C 3.6/C 3.7/C 3.8/C 3.9/C 3.10/C 3.11/C 3.12/C 3.13/C 3.14/C 3.15/C 3.16/C 3.17/C | No description available 
    11097  
    11098 
    11099 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11100 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-PflAc17.pdb
    11101 
    11102 Chain information for Cj-PflAc17.pdb 
    11103 --- 
    11104 Chain | Description 
    11105 9.1/C 9.2/C 9.3/C 9.4/C 9.5/C 9.6/C 9.7/C 9.8/C 9.9/C 9.10/C 9.11/C 9.12/C 9.13/C 9.14/C 9.15/C 9.16/C 9.17/C | No description available 
    11106  
    11107 
    11108 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11109 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FlgYc17.pdb
    11110 
    11111 Summary of feedback from opening
    11112 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11113 manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FlgYc17.pdb 
    11114 --- 
    11115 warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 169 ASP C 182 1 14 
    11116 Start residue of secondary structure not found: HELIX 2 2 TYR C 186 ARG C 199
    11117 1 14 
    11118 Start residue of secondary structure not found: HELIX 3 3 THR C 206 TYR C 221
    11119 1 16 
    11120 Start residue of secondary structure not found: HELIX 4 4 GLN C 230 THR C 246
    11121 1 17 
    11122 Start residue of secondary structure not found: HELIX 5 5 PHE C 253 ALA C 266
    11123 1 14 
    11124 31 messages similar to the above omitted 
    11125  
    11126 Chain information for Cj-FlgYc17.pdb 
    11127 --- 
    11128 Chain | Description 
    11129 11.1/A 11.2/A 11.3/A 11.4/A 11.5/A 11.6/A 11.7/A 11.8/A 11.9/A 11.10/A 11.11/A 11.12/A 11.13/A 11.14/A 11.15/A 11.16/A 11.17/A 11.1/B 11.2/B 11.3/B 11.4/B 11.5/B 11.6/B 11.7/B 11.8/B 11.9/B 11.10/B 11.11/B 11.12/B 11.13/B 11.14/B 11.15/B 11.16/B 11.17/B | No description available 
    11130  
    11131 
    11132 > select add #9
    11133 
    11134 86207 atoms, 87652 bonds, 10557 residues, 18 models selected 
    11135 
    11136 > select add #11
    11137 
    11138 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    11139 
    11140 > select add #3
    11141 
    11142 235875 atoms, 239445 bonds, 29206 residues, 54 models selected 
    11143 
    11144 > hide #!2 models
    11145 
    11146 > hide #!4 models
    11147 
    11148 > hide #!6 models
    11149 
    11150 > hide #!8 models
    11151 
    11152 > show #!8 models
    11153 
    11154 > hide #!15 models
    11155 
    11156 > hide #!17 models
    11157 
    11158 > hide #!13 models
    11159 
    11160 > hide #!12 models
    11161 
    11162 > ui mousemode right "translate selected models"
    11163 
    11164 > view matrix models
    11165 > #3,1,0,0,-542.96,0,1,0,-237.23,0,0,1,-106.9,#9,1,0,0,-542.96,0,1,0,-237.23,0,0,1,-106.9,#11,1,0,0,-542.96,0,1,0,-237.23,0,0,1,-106.9
    11166 
    11167 > view matrix models
    11168 > #3,1,0,0,-544.56,0,1,0,-250.71,0,0,1,-326.13,#9,1,0,0,-544.56,0,1,0,-250.71,0,0,1,-326.13,#11,1,0,0,-544.56,0,1,0,-250.71,0,0,1,-326.13
    11169 
    11170 > view matrix models
    11171 > #3,1,0,0,-531.61,0,1,0,-262.48,0,0,1,-325.48,#9,1,0,0,-531.61,0,1,0,-262.48,0,0,1,-325.48,#11,1,0,0,-531.61,0,1,0,-262.48,0,0,1,-325.48
    11172 
    11173 > ui mousemode right "rotate selected models"
    11174 
    11175 > view matrix models
    11176 > #3,1,-0.0014584,7.7162e-05,-530.87,0.0014584,1,2.6414e-06,-263.26,-7.7165e-05,-2.5288e-06,1,-325.44,#9,1,-0.0014584,7.7162e-05,-530.87,0.0014584,1,2.6414e-06,-263.26,-7.7165e-05,-2.5288e-06,1,-325.44,#11,1,-0.0014584,7.7162e-05,-530.87,0.0014584,1,2.6414e-06,-263.26,-7.7165e-05,-2.5288e-06,1,-325.44
    11177 
    11178 > view matrix models
    11179 > #3,0.99997,0.0077913,-0.00041228,-535.55,-0.0077913,0.99997,-1.2204e-05,-258.27,0.00041217,1.5416e-05,1,-325.71,#9,0.99997,0.0077913,-0.00041228,-535.55,-0.0077913,0.99997,-1.2204e-05,-258.27,0.00041217,1.5416e-05,1,-325.71,#11,0.99997,0.0077913,-0.00041228,-535.55,-0.0077913,0.99997,-1.2204e-05,-258.27,0.00041217,1.5416e-05,1,-325.71
    11180 
    11181 > view matrix models
    11182 > #3,0.99992,-0.012467,0.00065949,-525.24,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-325.12,#9,0.99992,-0.012467,0.00065949,-525.24,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-325.12,#11,0.99992,-0.012467,0.00065949,-525.24,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-325.12
    11183 
    11184 > view orient
    11185 
    11186 > turn x 90
    11187 
    11188 [Repeated 2 time(s)]
    11189 
    11190 > view matrix models
    11191 > #3,0.99992,-0.012467,0.00065949,-525.24,0.012446,0.99958,0.026169,-282.52,-0.00098547,-0.026159,0.99966,-310.77,#9,0.99992,-0.012467,0.00065949,-525.24,0.012446,0.99958,0.026169,-282.52,-0.00098547,-0.026159,0.99966,-310.77,#11,0.99992,-0.012467,0.00065949,-525.24,0.012446,0.99958,0.026169,-282.52,-0.00098547,-0.026159,0.99966,-310.77
    11192 
    11193 > ui mousemode right "translate selected models"
    11194 
    11195 > view matrix models
    11196 > #3,0.99992,-0.012467,0.00065949,-526.09,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-308.76,#9,0.99992,-0.012467,0.00065949,-526.09,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-308.76,#11,0.99992,-0.012467,0.00065949,-526.09,0.012467,0.99992,2.6211e-05,-269.15,-0.00065977,-1.7986e-05,1,-308.76
    11197 
    11198 > turn x 90
    11199 
    11200 > view matrix models
    11201 > #3,0.99992,-0.012467,0.00065949,-523.3,0.012467,0.99992,2.6211e-05,-271.87,-0.00065977,-1.7986e-05,1,-308.76,#9,0.99992,-0.012467,0.00065949,-523.3,0.012467,0.99992,2.6211e-05,-271.87,-0.00065977,-1.7986e-05,1,-308.76,#11,0.99992,-0.012467,0.00065949,-523.3,0.012467,0.99992,2.6211e-05,-271.87,-0.00065977,-1.7986e-05,1,-308.76
    11202 
    11203 > select subtract #3
    11204 
    11205 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    11206 
    11207 > select add #3.1
    11208 
    11209 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    11210 
    11211 > select subtract #3.1
    11212 
    11213 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    11214 
    11215 > select add #3.2
    11216 
    11217 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    11218 
    11219 > select subtract #3.2
    11220 
    11221 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    11222 
    11223 > select add #3.3
    11224 
    11225 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    11226 
    11227 > select subtract #3.3
    11228 
    11229 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    11230 
    11231 > select add #3.1
    11232 
    11233 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    11234 
    11235 > select subtract #3.1
    11236 
    11237 128197 atoms, 129846 bonds, 15827 residues, 36 models selected 
    11238 
    11239 > select add #3.1
    11240 
    11241 134531 atoms, 136293 bonds, 16614 residues, 37 models selected 
    11242 
    11243 > select add #3.17
    11244 
    11245 140865 atoms, 142740 bonds, 17401 residues, 38 models selected 
    11246 
    11247 > select add #3.16
    11248 
    11249 147199 atoms, 149187 bonds, 18188 residues, 39 models selected 
    11250 
    11251 > select add #3.15
    11252 
    11253 153533 atoms, 155634 bonds, 18975 residues, 40 models selected 
    11254 
    11255 > select add #3.14
    11256 
    11257 159867 atoms, 162081 bonds, 19762 residues, 41 models selected 
    11258 
    11259 > select subtract #3.14
    11260 
    11261 153533 atoms, 155634 bonds, 18975 residues, 40 models selected 
    11262 
    11263 > select add #3.14
    11264 
    11265 159867 atoms, 162081 bonds, 19762 residues, 41 models selected 
    11266 
    11267 > hide #!5 models
    11268 
    11269 > hide #3.14 models
    11270 
    11271 > show #3.14 models
    11272 
    11273 > hide #3.14 models
    11274 
    11275 > show #3.14 models
    11276 
    11277 > select add #3.13
    11278 
    11279 166201 atoms, 168528 bonds, 20549 residues, 42 models selected 
    11280 
    11281 > select subtract #3.13
    11282 
    11283 159867 atoms, 162081 bonds, 19762 residues, 41 models selected 
    11284 
    11285 > hide sel cartoons
    11286 
    11287 > show sel cartoons
    11288 
    11289 > select subtract #9
    11290 
    11291 73660 atoms, 74429 bonds, 9205 residues, 23 models selected 
    11292 
    11293 > select subtract #11
    11294 
    11295 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    11296 
    11297 > hide sel cartoons
    11298 
    11299 > show sel cartoons
    11300 
    11301 > select add #7
    11302 
    11303 31670 atoms, 32235 bonds, 3935 residues, 7 models selected 
    11304 
    11305 > select subtract #7
    11306 
    11307 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    11308 
    11309 > select add #7
    11310 
    11311 31670 atoms, 32235 bonds, 3935 residues, 7 models selected 
    11312 
    11313 > select subtract #7
    11314 
    11315 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    11316 
    11317 > select add #7
    11318 
    11319 31670 atoms, 32235 bonds, 3935 residues, 7 models selected 
    11320 
    11321 > select subtract #7
    11322 
    11323 31670 atoms, 32235 bonds, 3935 residues, 5 models selected 
    11324 
    11325 Cell requested for row 41 is out of bounds for table with 49 rows! Resizing
    11326 table model. 
    11327 
    11328 > select add #9.1
    11329 
    11330 36741 atoms, 37391 bonds, 4556 residues, 6 models selected 
    11331 
    11332 > select add #9.2
    11333 
    11334 41812 atoms, 42547 bonds, 5177 residues, 7 models selected 
    11335 
    11336 > select add #9.17
    11337 
    11338 46883 atoms, 47703 bonds, 5798 residues, 8 models selected 
    11339 
    11340 > select add #9.16
    11341 
    11342 51954 atoms, 52859 bonds, 6419 residues, 9 models selected 
    11343 
    11344 > select add #9.15
    11345 
    11346 57025 atoms, 58015 bonds, 7040 residues, 10 models selected 
    11347 
    11348 > select add #9.14
    11349 
    11350 62096 atoms, 63171 bonds, 7661 residues, 11 models selected 
    11351 
    11352 > select add #9.3
    11353 
    11354 67167 atoms, 68327 bonds, 8282 residues, 12 models selected 
    11355 
    11356 > select add #11.1
    11357 
    11358 69637 atoms, 70809 bonds, 8592 residues, 13 models selected 
    11359 
    11360 > select add #11.2
    11361 
    11362 72107 atoms, 73291 bonds, 8902 residues, 14 models selected 
    11363 
    11364 > select add #11.3
    11365 
    11366 74577 atoms, 75773 bonds, 9212 residues, 15 models selected 
    11367 
    11368 > select add #11.17
    11369 
    11370 77047 atoms, 78255 bonds, 9522 residues, 16 models selected 
    11371 
    11372 > select add #11.16
    11373 
    11374 79517 atoms, 80737 bonds, 9832 residues, 17 models selected 
    11375 
    11376 > select add #11.15
    11377 
    11378 81987 atoms, 83219 bonds, 10142 residues, 18 models selected 
    11379 
    11380 > select add #11.14
    11381 
    11382 84457 atoms, 85701 bonds, 10452 residues, 19 models selected 
    11383 
    11384 > hide sel cartoons
    11385 
    11386 > show sel cartoons
    11387 
    11388 > select add #3.2
    11389 
    11390 90791 atoms, 92148 bonds, 11239 residues, 20 models selected 
    11391 
    11392 > select add #3.13
    11393 
    11394 97125 atoms, 98595 bonds, 12026 residues, 21 models selected 
    11395 
    11396 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11397 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-extract-from-Jack/FlgY-PflA-
    11398 > PflB.pdb selectedOnly true
    11399 
    11400 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11401 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-extract-from-Jack/FlgY-PflA-
    11402 > PflB.pdb
    11403 
    11404 Summary of feedback from opening
    11405 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11406 manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-extract-from-Jack/FlgY-PflA-
    11407 PflB.pdb 
    11408 --- 
    11409 warnings | Start residue of secondary structure not found: HELIX 1 1 ARG A 109 LEU A 122 1 14 
    11410 Start residue of secondary structure not found: HELIX 2 2 VAL A 126 MET A 153
    11411 1 28 
    11412 Start residue of secondary structure not found: HELIX 3 3 PHE A 158 ALA A 170
    11413 1 13 
    11414 Start residue of secondary structure not found: HELIX 4 4 GLN A 175 LYS A 188
    11415 1 14 
    11416 Start residue of secondary structure not found: HELIX 5 5 LYS A 192 TYR A 205
    11417 1 14 
    11418 821 messages similar to the above omitted 
    11419  
    11420 Chain information for FlgY-PflA-PflB.pdb 
    11421 --- 
    11422 Chain | Description 
    11423 14.1/A 14.2/A 14.3/A 14.4/A 14.5/A 14.6/A 14.7/A | No description available 
    11424 14.15/A 14.16/A 14.17/A 14.18/A 14.19/A 14.20/A 14.21/A 14.15/B 14.16/B 14.17/B 14.18/B 14.19/B 14.20/B 14.21/B | No description available 
    11425 14.1/C 14.2/C 14.3/C 14.4/C 14.5/C 14.6/C 14.7/C | No description available 
    11426 14.8/C 14.9/C 14.10/C 14.11/C 14.12/C 14.13/C 14.14/C | No description available 
    11427  
    11428 
    11429 > select add #3
    11430 
    11431 160465 atoms, 163065 bonds, 19896 residues, 32 models selected 
    11432 
    11433 > hide #!3 models
    11434 
    11435 > select subtract #3
    11436 
    11437 52787 atoms, 53466 bonds, 6517 residues, 14 models selected 
    11438 
    11439 > select add #9
    11440 
    11441 103497 atoms, 105026 bonds, 12727 residues, 25 models selected 
    11442 
    11443 > select subtract #9
    11444 
    11445 17290 atoms, 17374 bonds, 2170 residues, 7 models selected 
    11446 
    11447 > hide #!9 models
    11448 
    11449 > select add #11
    11450 
    11451 41990 atoms, 42194 bonds, 5270 residues, 18 models selected 
    11452 
    11453 > select subtract #11
    11454 
    11455 Nothing selected 
    11456 
    11457 > hide #!11 models
    11458 
    11459 > select add #14
    11460 
    11461 97125 atoms, 98595 bonds, 12026 residues, 22 models selected 
    11462 
    11463 > combine #14 modelId #15 name FlgY-PflA-PflB-comp
    11464 
    11465 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.2 to 'B' 
    11466 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.2 to 'D' 
    11467 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.3 to 'E' 
    11468 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.3 to 'F' 
    11469 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.4 to 'G' 
    11470 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.4 to 'H' 
    11471 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.5 to 'I' 
    11472 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.5 to 'J' 
    11473 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.6 to 'K' 
    11474 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.6 to 'L' 
    11475 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.7 to 'M' 
    11476 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.7 to 'N' 
    11477 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.8 to 'O' 
    11478 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.9 to 'P' 
    11479 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.10 to 'Q' 
    11480 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.11 to 'R' 
    11481 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.12 to 'S' 
    11482 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.13 to 'T' 
    11483 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.14 to 'U' 
    11484 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.15 to 'V' 
    11485 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.15 to 'W' 
    11486 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.16 to 'X' 
    11487 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.16 to 'Y' 
    11488 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.17 to 'Z' 
    11489 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.17 to 'a' 
    11490 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.18 to 'b' 
    11491 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.18 to 'c' 
    11492 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.19 to 'd' 
    11493 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.19 to 'e' 
    11494 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.20 to 'f' 
    11495 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.20 to 'g' 
    11496 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.21 to 'h' 
    11497 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.21 to 'i' 
    11498 Traceback (most recent call last): 
    11499 File
    11500 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11501 packages/chimerax/cmd_line/tool.py", line 319, in execute 
    11502 cmd.run(cmd_text) 
    11503 File
    11504 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11505 packages/chimerax/core/commands/cli.py", line 3213, in run 
    11506 result = ci.function(session, **kw_args) 
    11507 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    11508 File
    11509 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11510 packages/chimerax/atomic/cmd.py", line 169, in combine_cmd 
    11511 session.models.add([combination]) 
    11512 File
    11513 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11514 packages/chimerax/core/models.py", line 756, in add 
    11515 p = self._parent_for_added_model(model, parent, root_model = root_model) 
    11516 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    11517 File
    11518 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11519 packages/chimerax/core/models.py", line 825, in _parent_for_added_model 
    11520 raise ValueError('Tried to add model %s with the same id as another model %s' 
    11521 ValueError: Tried to add model FlgY-PflA-PflB-comp #15 with the same id as
    11522 another model LP-ring.mrc gaussian #15 
    11523  
    11524 ValueError: Tried to add model FlgY-PflA-PflB-comp #15 with the same id as
    11525 another model LP-ring.mrc gaussian #15 
    11526  
    11527 File
    11528 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    11529 packages/chimerax/core/models.py", line 825, in _parent_for_added_model 
    11530 raise ValueError('Tried to add model %s with the same id as another model %s' 
    11531  
    11532 See log for complete Python traceback. 
    11533  
    11534 
    11535 > combine #14 modelId #16 name FlgY-PflA-PflB-comp
    11536 
    11537 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.2 to 'B' 
    11538 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.2 to 'D' 
    11539 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.3 to 'E' 
    11540 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.3 to 'F' 
    11541 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.4 to 'G' 
    11542 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.4 to 'H' 
    11543 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.5 to 'I' 
    11544 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.5 to 'J' 
    11545 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.6 to 'K' 
    11546 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.6 to 'L' 
    11547 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.7 to 'M' 
    11548 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.7 to 'N' 
    11549 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.8 to 'O' 
    11550 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.9 to 'P' 
    11551 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.10 to 'Q' 
    11552 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.11 to 'R' 
    11553 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.12 to 'S' 
    11554 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.13 to 'T' 
    11555 Remapping chain ID 'C' in FlgY-PflA-PflB.pdb #14.14 to 'U' 
    11556 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.15 to 'V' 
    11557 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.15 to 'W' 
    11558 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.16 to 'X' 
    11559 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.16 to 'Y' 
    11560 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.17 to 'Z' 
    11561 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.17 to 'a' 
    11562 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.18 to 'b' 
    11563 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.18 to 'c' 
    11564 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.19 to 'd' 
    11565 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.19 to 'e' 
    11566 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.20 to 'f' 
    11567 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.20 to 'g' 
    11568 Remapping chain ID 'A' in FlgY-PflA-PflB.pdb #14.21 to 'h' 
    11569 Remapping chain ID 'B' in FlgY-PflA-PflB.pdb #14.21 to 'i' 
    11570 
    11571 > select subtract #14
    11572 
    11573 Nothing selected 
    11574 
    11575 > hide #!14 models
    11576 
    11577 > select add #16
    11578 
    11579 97125 atoms, 98595 bonds, 12026 residues, 1 model selected 
    11580 
    11581 > ui tool show "Fit in Map"
    11582 
    11583 > hide #!7 models
    11584 
    11585 > show #!7 models
    11586 
    11587 The cached device pixel ratio value was stale on window expose. Please file a
    11588 QTBUG which explains how to reproduce. 
    11589 
    11590 [Repeated 1 time(s)]
    11591 
    11592 > fitmap #16 inMap #7
    11593 
    11594 Fit molecule FlgY-PflA-PflB-comp (#16) to map FlgY-PflA.mrc gaussian (#7)
    11595 using 97125 atoms 
    11596 average map value = 0.02173, steps = 76 
    11597 shifted from previous position = 10.6 
    11598 rotated from previous position = 2.68 degrees 
    11599 atoms outside contour = 62067, contour level = 0.021605 
    11600  
    11601 Position of FlgY-PflA-PflB-comp (#16) relative to FlgY-PflA.mrc gaussian (#7)
    11602 coordinates: 
    11603 Matrix rotation and translation 
    11604 0.99890813 -0.04632273 -0.00606159 12.03955752 
    11605 0.04632964 0.99892570 0.00100467 -4.85386975 
    11606 0.00600854 -0.00128440 0.99998112 -10.34904122 
    11607 Axis -0.02449159 -0.12914303 0.99132348 
    11608 Axis point 138.26968799 251.39821636 0.00000000 
    11609 Rotation angle (degrees) 2.67850189 
    11610 Shift along axis -9.92727198 
    11611  
    11612 
    11613 > fitmap #16 inMap #7
    11614 
    11615 Fit molecule FlgY-PflA-PflB-comp (#16) to map FlgY-PflA.mrc gaussian (#7)
    11616 using 97125 atoms 
    11617 average map value = 0.02173, steps = 40 
    11618 shifted from previous position = 0.0317 
    11619 rotated from previous position = 0.00436 degrees 
    11620 atoms outside contour = 62067, contour level = 0.021605 
    11621  
    11622 Position of FlgY-PflA-PflB-comp (#16) relative to FlgY-PflA.mrc gaussian (#7)
    11623 coordinates: 
    11624 Matrix rotation and translation 
    11625 0.99890639 -0.04636086 -0.00605837 12.04749501 
    11626 0.04636737 0.99892401 0.00093864 -4.85138056 
    11627 0.00600834 -0.00121852 0.99998121 -10.39765652 
    11628 Axis -0.02306257 -0.12900753 0.99137540 
    11629 Axis point 138.18039759 251.64926912 0.00000000 
    11630 Rotation angle (degrees) 2.68055621 
    11631 Shift along axis -9.95996242 
    11632  
    11633 
    11634 > fitmap #16 inMap #7
    11635 
    11636 Fit molecule FlgY-PflA-PflB-comp (#16) to map FlgY-PflA.mrc gaussian (#7)
    11637 using 97125 atoms 
    11638 average map value = 0.02173, steps = 44 
    11639 shifted from previous position = 0.00727 
    11640 rotated from previous position = 0.00299 degrees 
    11641 atoms outside contour = 62063, contour level = 0.021605 
    11642  
    11643 Position of FlgY-PflA-PflB-comp (#16) relative to FlgY-PflA.mrc gaussian (#7)
    11644 coordinates: 
    11645 Matrix rotation and translation 
    11646 0.99890454 -0.04640439 -0.00602977 12.05565586 
    11647 0.04641086 0.99892200 0.00093720 -4.85263354 
    11648 0.00597978 -0.00121602 0.99998138 -10.39368692 
    11649 Axis -0.02300119 -0.12828821 0.99147016 
    11650 Axis point 137.93292863 251.60266362 0.00000000 
    11651 Rotation angle (degrees) 2.68281694 
    11652 Shift along axis -9.95978923 
    11653  
    11654 
    11655 > select subtract #16
    11656 
    11657 Nothing selected 
    11658 
    11659 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11660 > manuscript/Start_Aug_2024/Local-ref-PflAB/Hp_FliF.pdb
    11661 
    11662 Summary of feedback from opening
    11663 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    11664 manuscript/Start_Aug_2024/Local-ref-PflAB/Hp_FliF.pdb 
    11665 --- 
    11666 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 78 1 77 
    11667 Start residue of secondary structure not found: HELIX 2 2 LEU A 79 ILE A 81 1
    11668 3 
    11669 Start residue of secondary structure not found: HELIX 3 3 LYS A 107 LEU A 118
    11670 1 12 
    11671 Start residue of secondary structure not found: HELIX 4 4 ASN A 119 MET A 121
    11672 1 3 
    11673 Start residue of secondary structure not found: HELIX 5 5 GLU A 154 ILE A 156
    11674 1 3 
    11675 5 messages similar to the above omitted 
    11676 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11677 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11678 0 
    11679 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11680 131 0 
    11681 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11682 144 0 
    11683 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11684 116 0 
    11685 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11686 133 0 
    11687 13 messages similar to the above omitted 
    11688 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11689 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11690 0 
    11691 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11692 131 0 
    11693 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11694 144 0 
    11695 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11696 116 0 
    11697 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11698 133 0 
    11699 13 messages similar to the above omitted 
    11700 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11701 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11702 0 
    11703 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11704 131 0 
    11705 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11706 144 0 
    11707 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11708 116 0 
    11709 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11710 133 0 
    11711 13 messages similar to the above omitted 
    11712 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11713 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11714 0 
    11715 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11716 131 0 
    11717 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11718 144 0 
    11719 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11720 116 0 
    11721 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11722 133 0 
    11723 13 messages similar to the above omitted 
    11724 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11725 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11726 0 
    11727 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11728 131 0 
    11729 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11730 144 0 
    11731 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11732 116 0 
    11733 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11734 133 0 
    11735 13 messages similar to the above omitted 
    11736 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11737 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11738 0 
    11739 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11740 131 0 
    11741 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11742 144 0 
    11743 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11744 116 0 
    11745 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11746 133 0 
    11747 13 messages similar to the above omitted 
    11748 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11749 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11750 0 
    11751 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11752 131 0 
    11753 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11754 144 0 
    11755 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11756 116 0 
    11757 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11758 133 0 
    11759 13 messages similar to the above omitted 
    11760 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11761 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11762 0 
    11763 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11764 131 0 
    11765 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11766 144 0 
    11767 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11768 116 0 
    11769 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11770 133 0 
    11771 13 messages similar to the above omitted 
    11772 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11773 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11774 0 
    11775 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11776 131 0 
    11777 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11778 144 0 
    11779 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11780 116 0 
    11781 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11782 133 0 
    11783 13 messages similar to the above omitted 
    11784 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11785 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11786 0 
    11787 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11788 131 0 
    11789 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11790 144 0 
    11791 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11792 116 0 
    11793 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11794 133 0 
    11795 13 messages similar to the above omitted 
    11796 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11797 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11798 0 
    11799 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11800 131 0 
    11801 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11802 144 0 
    11803 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11804 116 0 
    11805 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11806 133 0 
    11807 13 messages similar to the above omitted 
    11808 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11809 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11810 0 
    11811 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11812 131 0 
    11813 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11814 144 0 
    11815 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11816 116 0 
    11817 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11818 133 0 
    11819 13 messages similar to the above omitted 
    11820 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11821 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11822 0 
    11823 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11824 131 0 
    11825 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11826 144 0 
    11827 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11828 116 0 
    11829 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11830 133 0 
    11831 13 messages similar to the above omitted 
    11832 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11833 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11834 0 
    11835 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11836 131 0 
    11837 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11838 144 0 
    11839 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11840 116 0 
    11841 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11842 133 0 
    11843 13 messages similar to the above omitted 
    11844 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11845 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11846 0 
    11847 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11848 131 0 
    11849 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11850 144 0 
    11851 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11852 116 0 
    11853 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11854 133 0 
    11855 13 messages similar to the above omitted 
    11856 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11857 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11858 0 
    11859 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11860 131 0 
    11861 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11862 144 0 
    11863 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11864 116 0 
    11865 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11866 133 0 
    11867 13 messages similar to the above omitted 
    11868 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11869 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11870 0 
    11871 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11872 131 0 
    11873 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11874 144 0 
    11875 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11876 116 0 
    11877 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11878 133 0 
    11879 13 messages similar to the above omitted 
    11880 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11881 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11882 0 
    11883 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11884 131 0 
    11885 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11886 144 0 
    11887 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11888 116 0 
    11889 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11890 133 0 
    11891 13 messages similar to the above omitted 
    11892 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11893 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11894 0 
    11895 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11896 131 0 
    11897 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11898 144 0 
    11899 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11900 116 0 
    11901 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11902 133 0 
    11903 13 messages similar to the above omitted 
    11904 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11905 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11906 0 
    11907 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11908 131 0 
    11909 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11910 144 0 
    11911 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11912 116 0 
    11913 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11914 133 0 
    11915 13 messages similar to the above omitted 
    11916 End residue of secondary structure not found: SHEET 1 1 1 THR A 87 ILE A 93 0 
    11917 Start residue of secondary structure not found: SHEET 2 2 1 SER A 97 THR A 104
    11918 0 
    11919 Start residue of secondary structure not found: SHEET 3 3 1 TYR A 124 PRO A
    11920 131 0 
    11921 Start residue of secondary structure not found: SHEET 4 4 1 PHE A 137 PHE A
    11922 144 0 
    11923 Start residue of secondary structure not found: SHEET 5 5 1 ALA B 110 LEU B
    11924 116 0 
    11925 Start residue of secondary structure not found: SHEET 6 6 1 LYS B 124 ALA B
    11926 133 0 
    11927 1143 messages similar to the above omitted 
    11928  
    11929 Chain information for Hp_FliF.pdb 
    11930 --- 
    11931 Chain | Description 
    11932 18.1/A 18.2/A 18.3/A 18.4/A 18.5/A 18.6/A 18.7/A 18.8/A 18.9/A 18.10/A 18.11/A 18.12/A 18.13/A 18.14/A 18.15/A 18.16/A 18.17/A 18.18/A 18.19/A 18.20/A 18.21/A | No description available 
    11933 18.22/A 18.23/A 18.24/A 18.25/A 18.26/A 18.27/A 18.28/A 18.29/A 18.30/A 18.31/A 18.32/A 18.33/A 18.34/A 18.35/A 18.36/A 18.37/A 18.38/A 18.39/A 18.40/A 18.41/A 18.42/A | No description available 
    11934 18.43/A 18.44/A 18.45/A 18.46/A 18.47/A 18.48/A 18.49/A 18.50/A 18.51/A 18.52/A 18.53/A 18.54/A 18.55/A 18.56/A 18.57/A 18.58/A 18.59/A 18.60/A 18.61/A 18.62/A 18.63/A 18.64/A 18.65/A 18.66/A 18.67/A 18.68/A 18.69/A 18.70/A 18.71/A 18.72/A 18.73/A 18.74/A 18.75/A 18.76/A 18.77/A 18.78/A 18.79/A 18.80/A 18.81/A | No description available 
    11935  
    11936 
    11937 > select add #18
    11938 
    11939 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 121 models
    11940 selected 
    11941 
    11942 > view matrix models #18,1,0,0,-412.46,0,1,0,-284.19,0,0,1,80.619
    11943 
    11944 > view matrix models #18,1,0,0,-500.78,0,1,0,-408.54,0,0,1,-217.91
    11945 
    11946 > view matrix models #18,1,0,0,-525.11,0,1,0,-308.76,0,0,1,-172.07
    11947 
    11948 > view matrix models #18,1,0,0,-528.84,0,1,0,-264.67,0,0,1,-290.37
    11949 
    11950 > view matrix models #18,1,0,0,-526.71,0,1,0,-269.57,0,0,1,-290.29
    11951 
    11952 > view matrix models #18,1,0,0,-526.04,0,1,0,-271.65,0,0,1,-309.49
    11953 
    11954 > combine #18 modelId #19 name Hp-FliF-comp
    11955 
    11956 Remapping chain ID 'A' in Hp_FliF.pdb #18.2 to 'B' 
    11957 Remapping chain ID 'A' in Hp_FliF.pdb #18.3 to 'C' 
    11958 Remapping chain ID 'A' in Hp_FliF.pdb #18.4 to 'D' 
    11959 Remapping chain ID 'A' in Hp_FliF.pdb #18.5 to 'E' 
    11960 Remapping chain ID 'A' in Hp_FliF.pdb #18.6 to 'F' 
    11961 Remapping chain ID 'A' in Hp_FliF.pdb #18.7 to 'G' 
    11962 Remapping chain ID 'A' in Hp_FliF.pdb #18.8 to 'H' 
    11963 Remapping chain ID 'A' in Hp_FliF.pdb #18.9 to 'I' 
    11964 Remapping chain ID 'A' in Hp_FliF.pdb #18.10 to 'J' 
    11965 Remapping chain ID 'A' in Hp_FliF.pdb #18.11 to 'K' 
    11966 Remapping chain ID 'A' in Hp_FliF.pdb #18.12 to 'L' 
    11967 Remapping chain ID 'A' in Hp_FliF.pdb #18.13 to 'M' 
    11968 Remapping chain ID 'A' in Hp_FliF.pdb #18.14 to 'N' 
    11969 Remapping chain ID 'A' in Hp_FliF.pdb #18.15 to 'O' 
    11970 Remapping chain ID 'A' in Hp_FliF.pdb #18.16 to 'P' 
    11971 Remapping chain ID 'A' in Hp_FliF.pdb #18.17 to 'Q' 
    11972 Remapping chain ID 'A' in Hp_FliF.pdb #18.18 to 'R' 
    11973 Remapping chain ID 'A' in Hp_FliF.pdb #18.19 to 'S' 
    11974 Remapping chain ID 'A' in Hp_FliF.pdb #18.20 to 'T' 
    11975 Remapping chain ID 'A' in Hp_FliF.pdb #18.21 to 'U' 
    11976 Remapping chain ID 'A' in Hp_FliF.pdb #18.22 to 'V' 
    11977 Remapping chain ID 'A' in Hp_FliF.pdb #18.23 to 'W' 
    11978 Remapping chain ID 'A' in Hp_FliF.pdb #18.24 to 'X' 
    11979 Remapping chain ID 'A' in Hp_FliF.pdb #18.25 to 'Y' 
    11980 Remapping chain ID 'A' in Hp_FliF.pdb #18.26 to 'Z' 
    11981 Remapping chain ID 'A' in Hp_FliF.pdb #18.27 to 'a' 
    11982 Remapping chain ID 'A' in Hp_FliF.pdb #18.28 to 'b' 
    11983 Remapping chain ID 'A' in Hp_FliF.pdb #18.29 to 'c' 
    11984 Remapping chain ID 'A' in Hp_FliF.pdb #18.30 to 'd' 
    11985 Remapping chain ID 'A' in Hp_FliF.pdb #18.31 to 'e' 
    11986 Remapping chain ID 'A' in Hp_FliF.pdb #18.32 to 'f' 
    11987 Remapping chain ID 'A' in Hp_FliF.pdb #18.33 to 'g' 
    11988 Remapping chain ID 'A' in Hp_FliF.pdb #18.34 to 'h' 
    11989 Remapping chain ID 'A' in Hp_FliF.pdb #18.35 to 'i' 
    11990 Remapping chain ID 'A' in Hp_FliF.pdb #18.36 to 'j' 
    11991 Remapping chain ID 'A' in Hp_FliF.pdb #18.37 to 'k' 
    11992 Remapping chain ID 'A' in Hp_FliF.pdb #18.38 to 'l' 
    11993 Remapping chain ID 'A' in Hp_FliF.pdb #18.39 to 'm' 
    11994 Remapping chain ID 'A' in Hp_FliF.pdb #18.40 to 'n' 
    11995 Remapping chain ID 'A' in Hp_FliF.pdb #18.41 to 'o' 
    11996 Remapping chain ID 'A' in Hp_FliF.pdb #18.42 to 'p' 
    11997 Remapping chain ID 'A' in Hp_FliF.pdb #18.43 to 'q' 
    11998 Remapping chain ID 'A' in Hp_FliF.pdb #18.44 to 'r' 
    11999 Remapping chain ID 'A' in Hp_FliF.pdb #18.45 to 's' 
    12000 Remapping chain ID 'A' in Hp_FliF.pdb #18.46 to 't' 
    12001 Remapping chain ID 'A' in Hp_FliF.pdb #18.47 to 'u' 
    12002 Remapping chain ID 'A' in Hp_FliF.pdb #18.48 to 'v' 
    12003 Remapping chain ID 'A' in Hp_FliF.pdb #18.49 to 'w' 
    12004 Remapping chain ID 'A' in Hp_FliF.pdb #18.50 to 'x' 
    12005 Remapping chain ID 'A' in Hp_FliF.pdb #18.51 to 'y' 
    12006 Remapping chain ID 'A' in Hp_FliF.pdb #18.52 to 'z' 
    12007 Remapping chain ID 'A' in Hp_FliF.pdb #18.53 to '1' 
    12008 Remapping chain ID 'A' in Hp_FliF.pdb #18.54 to '2' 
    12009 Remapping chain ID 'A' in Hp_FliF.pdb #18.55 to '3' 
    12010 Remapping chain ID 'A' in Hp_FliF.pdb #18.56 to '4' 
    12011 Remapping chain ID 'A' in Hp_FliF.pdb #18.57 to '5' 
    12012 Remapping chain ID 'A' in Hp_FliF.pdb #18.58 to '6' 
    12013 Remapping chain ID 'A' in Hp_FliF.pdb #18.59 to '7' 
    12014 Remapping chain ID 'A' in Hp_FliF.pdb #18.60 to '8' 
    12015 Remapping chain ID 'A' in Hp_FliF.pdb #18.61 to '9' 
    12016 Remapping chain ID 'A' in Hp_FliF.pdb #18.62 to '0' 
    12017 Remapping chain ID 'A' in Hp_FliF.pdb #18.63 to 'AA' 
    12018 Remapping chain ID 'A' in Hp_FliF.pdb #18.64 to 'AB' 
    12019 Remapping chain ID 'A' in Hp_FliF.pdb #18.65 to 'AC' 
    12020 Remapping chain ID 'A' in Hp_FliF.pdb #18.66 to 'AD' 
    12021 Remapping chain ID 'A' in Hp_FliF.pdb #18.67 to 'AE' 
    12022 Remapping chain ID 'A' in Hp_FliF.pdb #18.68 to 'AF' 
    12023 Remapping chain ID 'A' in Hp_FliF.pdb #18.69 to 'AG' 
    12024 Remapping chain ID 'A' in Hp_FliF.pdb #18.70 to 'AH' 
    12025 Remapping chain ID 'A' in Hp_FliF.pdb #18.71 to 'AI' 
    12026 Remapping chain ID 'A' in Hp_FliF.pdb #18.72 to 'AJ' 
    12027 Remapping chain ID 'A' in Hp_FliF.pdb #18.73 to 'AK' 
    12028 Remapping chain ID 'A' in Hp_FliF.pdb #18.74 to 'AL' 
    12029 Remapping chain ID 'A' in Hp_FliF.pdb #18.75 to 'AM' 
    12030 Remapping chain ID 'A' in Hp_FliF.pdb #18.76 to 'AN' 
    12031 Remapping chain ID 'A' in Hp_FliF.pdb #18.77 to 'AO' 
    12032 Remapping chain ID 'A' in Hp_FliF.pdb #18.78 to 'AP' 
    12033 Remapping chain ID 'A' in Hp_FliF.pdb #18.79 to 'AQ' 
    12034 Remapping chain ID 'A' in Hp_FliF.pdb #18.80 to 'AR' 
    12035 Remapping chain ID 'A' in Hp_FliF.pdb #18.81 to 'AS' 
    12036 
    12037 > select subtract #18
    12038 
    12039 Nothing selected 
    12040 
    12041 > hide #!18 models
    12042 
    12043 > close #18
    12044 
    12045 > fitmap #19 inMap #8
    12046 
    12047 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    12048 atoms 
    12049 average map value = 0.01124, steps = 240 
    12050 shifted from previous position = 6.7 
    12051 rotated from previous position = 5.76 degrees 
    12052 atoms outside contour = 79659, contour level = 0.0029 
    12053  
    12054 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    12055 coordinates: 
    12056 Matrix rotation and translation 
    12057 0.99494987 -0.08808776 -0.04811753 -453.04926146 
    12058 0.08819268 0.99610343 0.00005766 -318.27166417 
    12059 0.04792495 -0.00430098 0.99884168 -326.11066539 
    12060 Axis -0.02170712 -0.47831516 0.87791993 
    12061 Axis point 4043.75615626 -5405.60252129 0.00000000 
    12062 Rotation angle (degrees) 5.76201189 
    12063 Shift along axis -124.23049728 
    12064  
    12065 
    12066 > fitmap #19 inMap #8
    12067 
    12068 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    12069 atoms 
    12070 average map value = 0.01124, steps = 44 
    12071 shifted from previous position = 0.0187 
    12072 rotated from previous position = 0.115 degrees 
    12073 atoms outside contour = 79648, contour level = 0.0029 
    12074  
    12075 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    12076 coordinates: 
    12077 Matrix rotation and translation 
    12078 0.99477266 -0.09007936 -0.04809439 -451.89435525 
    12079 0.09018680 0.99592486 0.00006420 -319.22900610 
    12080 0.04789261 -0.00440134 0.99884279 -326.04112326 
    12081 Axis -0.02186016 -0.46988510 0.88245687 
    12082 Axis point 3967.21079221 -5277.86678279 0.00000000 
    12083 Rotation angle (degrees) 5.86234530 
    12084 Shift along axis -127.83779472 
    12085  
    12086 
    12087 > fitmap #19 inMap #8
    12088 
    12089 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    12090 atoms 
    12091 average map value = 0.01125, steps = 40 
    12092 shifted from previous position = 0.0156 
    12093 rotated from previous position = 0.0564 degrees 
    12094 atoms outside contour = 79654, contour level = 0.0029 
    12095  
    12096 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    12097 coordinates: 
    12098 Matrix rotation and translation 
    12099 0.99468143 -0.09105658 -0.04814093 -451.31123222 
    12100 0.09116550 0.99583575 0.00006715 -319.70117678 
    12101 0.04793435 -0.00445559 0.99884055 -326.02873784 
    12102 Axis -0.02194993 -0.46627609 0.88436690 
    12103 Axis point 3930.10921638 -5217.12001004 0.00000000 
    12104 Rotation angle (degrees) 5.91333413 
    12105 Shift along axis -129.35375721 
    12106  
    12107 
    12108 > fitmap #19 inMap #8
    12109 
    12110 Fit molecule Hp-FliF-comp (#19) to map MS-ring.mrc gaussian (#8) using 112125
    12111 atoms 
    12112 average map value = 0.01125, steps = 48 
    12113 shifted from previous position = 0.0121 
    12114 rotated from previous position = 0.0167 degrees 
    12115 atoms outside contour = 79655, contour level = 0.0029 
    12116  
    12117 Position of Hp-FliF-comp (#19) relative to MS-ring.mrc gaussian (#8)
    12118 coordinates: 
    12119 Matrix rotation and translation 
    12120 0.99465592 -0.09134481 -0.04812207 -451.14593579 
    12121 0.09145477 0.99580923 0.00008361 -319.84811212 
    12122 0.04791277 -0.00448416 0.99884146 -326.01348203 
    12123 Axis -0.02211556 -0.46496714 0.88505167 
    12124 Axis point 3919.20566949 -5199.66103898 0.00000000 
    12125 Rotation angle (degrees) 5.92753566 
    12126 Shift along axis -129.84257200 
    12127  
    12128 
    12129 > show #!5 models
    12130 
    12131 > show #!4 models
    12132 
    12133 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12134 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FliLringC17.pdb
    12135 
    12136 Chain information for Cj-FliLringC17.pdb 
    12137 --- 
    12138 Chain | Description 
    12139 18.11/? 18.12/? 18.13/? 18.14/? 18.15/? 18.16/? 18.17/? 18.18/? 18.19/? 18.20/? | No description available 
    12140 18.1/B 18.2/B 18.3/B 18.4/B 18.5/B 18.6/B 18.7/B 18.8/B 18.9/B 18.10/B | No description available 
    12141  
    12142 
    12143 > select add #19
    12144 
    12145 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    12146 
    12147 > select subtract #19
    12148 
    12149 Nothing selected 
    12150 
    12151 > select add #18
    12152 
    12153 9850 atoms, 9950 bonds, 1220 residues, 21 models selected 
    12154 
    12155 > view matrix models #18,1,0,0,-563.06,0,1,0,-280.22,0,0,1,-81.971
    12156 
    12157 > view matrix models #18,1,0,0,-548.17,0,1,0,-365.12,0,0,1,-224.09
    12158 
    12159 > view matrix models #18,1,0,0,-584.16,0,1,0,-178.03,0,0,1,-299.62
    12160 
    12161 > view matrix models #18,1,0,0,-529.26,0,1,0,-247.21,0,0,1,-290.01
    12162 
    12163 > hide #!19 models
    12164 
    12165 > hide #16 models
    12166 
    12167 > hide #!10 models
    12168 
    12169 > hide #!8 models
    12170 
    12171 > hide #!7 models
    12172 
    12173 > hide #!5 models
    12174 
    12175 > view matrix models #18,1,0,0,-535.14,0,1,0,-254.76,0,0,1,-314.65
    12176 
    12177 > view matrix models #18,1,0,0,-525.73,0,1,0,-256.3,0,0,1,-316.03
    12178 
    12179 > combine #18 modelId #20 name Cj-FliL
    12180 
    12181 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.2 to 'C' 
    12182 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.3 to 'D' 
    12183 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.4 to 'E' 
    12184 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.5 to 'F' 
    12185 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.6 to 'G' 
    12186 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.7 to 'H' 
    12187 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.8 to 'I' 
    12188 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.9 to 'J' 
    12189 Remapping chain ID 'B' in Cj-FliLringC17.pdb #18.10 to 'K' 
    12190 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.11 to 'A' 
    12191 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.12 to 'L' 
    12192 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.13 to 'M' 
    12193 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.14 to 'N' 
    12194 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.15 to 'O' 
    12195 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.16 to 'P' 
    12196 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.17 to 'Q' 
    12197 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.18 to 'R' 
    12198 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.19 to 'S' 
    12199 Remapping chain ID ' ' in Cj-FliLringC17.pdb #18.20 to 'T' 
    12200 
    12201 > select subtract #18
    12202 
    12203 Nothing selected 
    12204 
    12205 > hide #!18 models
    12206 
    12207 > select add #20
    12208 
    12209 9850 atoms, 9950 bonds, 1220 residues, 1 model selected 
    12210 
    12211 > fitmap #20 inMap #4
    12212 
    12213 Fit molecule Cj-FliL (#20) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12214 average map value = 0.01285, steps = 124 
    12215 shifted from previous position = 7.8 
    12216 rotated from previous position = 27.4 degrees 
    12217 atoms outside contour = 4114, contour level = 0.0029 
    12218  
    12219 Position of Cj-FliL (#20) relative to FliL.mrc gaussian (#4) coordinates: 
    12220 Matrix rotation and translation 
    12221 0.94102639 0.01215047 0.33811493 -645.76339539 
    12222 -0.12192253 0.94438907 0.30539185 -270.36425430 
    12223 -0.31560139 -0.32860561 0.89017645 158.93123829 
    12224 Axis -0.68877240 0.71019490 -0.14565639 
    12225 Axis point 101.55935502 0.00000000 1459.84234590 
    12226 Rotation angle (degrees) 27.40241934 
    12227 Shift along axis 229.62333998 
    12228  
    12229 
    12230 > fitmap #20 inMap #4
    12231 
    12232 Fit molecule Cj-FliL (#20) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12233 average map value = 0.01285, steps = 48 
    12234 shifted from previous position = 0.0435 
    12235 rotated from previous position = 0.0183 degrees 
    12236 atoms outside contour = 4116, contour level = 0.0029 
    12237  
    12238 Position of Cj-FliL (#20) relative to FliL.mrc gaussian (#4) coordinates: 
    12239 Matrix rotation and translation 
    12240 0.94110316 0.01231967 0.33789505 -645.83093702 
    12241 -0.12195683 0.94443396 0.30523928 -270.31144458 
    12242 -0.31535911 -0.32847026 0.89031226 158.62213340 
    12243 Axis -0.68883142 0.71007609 -0.14595626 
    12244 Axis point 101.31864999 0.00000000 1460.57780476 
    12245 Rotation angle (degrees) 27.38638790 
    12246 Shift along axis 229.77505253 
    12247  
    12248 
    12249 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12250 > manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FliLringC17.pdb
    12251 
    12252 Summary of feedback from opening
    12253 /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    12254 manuscript/Start_Aug_2024/CJ_FlgV_ST/Cj-FliLringC17.pdb 
    12255 --- 
    12256 warnings | Start residue of secondary structure not found: HELIX 1 1 ALA C 169 ASP C 182 1 14 
    12257 Start residue of secondary structure not found: HELIX 2 2 TYR C 186 ARG C 199
    12258 1 14 
    12259 Start residue of secondary structure not found: HELIX 3 3 THR C 206 TYR C 221
    12260 1 16 
    12261 Start residue of secondary structure not found: HELIX 4 4 GLN C 230 THR C 246
    12262 1 17 
    12263 Start residue of secondary structure not found: HELIX 5 5 PHE C 253 ALA C 266
    12264 1 14 
    12265 715 messages similar to the above omitted 
    12266  
    12267 Chain information for Cj-FliLringC17.pdb 
    12268 --- 
    12269 Chain | Description 
    12270 21.11/? 21.12/? 21.13/? 21.14/? 21.15/? 21.16/? 21.17/? 21.18/? 21.19/? 21.20/? | No description available 
    12271 21.1/B 21.2/B 21.3/B 21.4/B 21.5/B 21.6/B 21.7/B 21.8/B 21.9/B 21.10/B | No description available 
    12272  
    12273 
    12274 > select subtract #20
    12275 
    12276 Nothing selected 
    12277 
    12278 > hide #20 models
    12279 
    12280 > close #18
    12281 
    12282 > combine #21 modelId #18 name Cj-FliL
    12283 
    12284 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.2 to 'C' 
    12285 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.3 to 'D' 
    12286 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.4 to 'E' 
    12287 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.5 to 'F' 
    12288 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.6 to 'G' 
    12289 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.7 to 'H' 
    12290 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.8 to 'I' 
    12291 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.9 to 'J' 
    12292 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.10 to 'K' 
    12293 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.11 to 'A' 
    12294 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.12 to 'L' 
    12295 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.13 to 'M' 
    12296 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.14 to 'N' 
    12297 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.15 to 'O' 
    12298 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.16 to 'P' 
    12299 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.17 to 'Q' 
    12300 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.18 to 'R' 
    12301 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.19 to 'S' 
    12302 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.20 to 'T' 
    12303 
    12304 > select add #18
    12305 
    12306 9850 atoms, 9950 bonds, 1220 residues, 1 model selected 
    12307 
    12308 > view matrix models #18,1,0,0,-17.715,0,1,0,-133.96,0,0,1,18.357
    12309 
    12310 > view matrix models #18,1,0,0,-40.442,0,1,0,-341.63,0,0,1,-243.52
    12311 
    12312 > show #20 models
    12313 
    12314 > view matrix models #18,1,0,0,-266.44,0,1,0,-386.31,0,0,1,-485.51
    12315 
    12316 > view matrix models #18,1,0,0,-462.06,0,1,0,-235.61,0,0,1,-433.25
    12317 
    12318 > view matrix models #18,1,0,0,-509.52,0,1,0,-172.96,0,0,1,-466.54
    12319 
    12320 > view matrix models #18,1,0,0,-514.97,0,1,0,-145.22,0,0,1,-326.99
    12321 
    12322 > view matrix models #18,1,0,0,-530.51,0,1,0,-147.06,0,0,1,-334.39
    12323 
    12324 > fitmap #18 inMap #4
    12325 
    12326 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12327 average map value = 0.01222, steps = 128 
    12328 shifted from previous position = 15.9 
    12329 rotated from previous position = 27.1 degrees 
    12330 atoms outside contour = 4262, contour level = 0.0029 
    12331  
    12332 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    12333 Matrix rotation and translation 
    12334 0.97347543 0.11182108 0.19960370 -668.52021332 
    12335 -0.18250281 0.90566474 0.38270629 -124.05180923 
    12336 -0.13797941 -0.40898340 0.90205003 43.97468080 
    12337 Axis -0.87037687 0.37113598 -0.32357716 
    12338 Axis point 0.00000000 303.50292607 904.78157801 
    12339 Rotation angle (degrees) 27.05187769 
    12340 Shift along axis 521.59524082 
    12341  
    12342 
    12343 > fitmap #18 inMap #4
    12344 
    12345 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12346 average map value = 0.01222, steps = 44 
    12347 shifted from previous position = 0.0133 
    12348 rotated from previous position = 0.0193 degrees 
    12349 atoms outside contour = 4260, contour level = 0.0029 
    12350  
    12351 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    12352 Matrix rotation and translation 
    12353 0.97344914 0.11187129 0.19970373 -668.56847363 
    12354 -0.18254518 0.90578463 0.38240223 -123.94269269 
    12355 -0.13810874 -0.40870407 0.90215684 43.90161217 
    12356 Axis -0.87011101 0.37154849 -0.32381870 
    12357 Axis point 0.00000000 303.77005735 905.61942679 
    12358 Rotation angle (degrees) 27.03925105 
    12359 Shift along axis 521.46190660 
    12360  
    12361 
    12362 > fitmap #18 inMap #4
    12363 
    12364 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12365 average map value = 0.01222, steps = 28 
    12366 shifted from previous position = 0.0119 
    12367 rotated from previous position = 0.00767 degrees 
    12368 atoms outside contour = 4259, contour level = 0.0029 
    12369  
    12370 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    12371 Matrix rotation and translation 
    12372 0.97343461 0.11195548 0.19972740 -668.60903994 
    12373 -0.18264464 0.90573382 0.38247508 -123.87978882 
    12374 -0.13807968 -0.40879362 0.90212071 43.93733564 
    12375 Axis -0.87009939 0.37146136 -0.32394986 
    12376 Axis point 0.00000000 303.98954245 905.30120865 
    12377 Rotation angle (degrees) 27.04564469 
    12378 Shift along axis 521.50626848 
    12379  
    12380 
    12381 > fitmap #18 inMap #4
    12382 
    12383 Fit molecule Cj-FliL (#18) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12384 average map value = 0.01222, steps = 40 
    12385 shifted from previous position = 0.0241 
    12386 rotated from previous position = 0.0219 degrees 
    12387 atoms outside contour = 4263, contour level = 0.0029 
    12388  
    12389 Position of Cj-FliL (#18) relative to FliL.mrc gaussian (#4) coordinates: 
    12390 Matrix rotation and translation 
    12391 0.97346986 0.11182028 0.19963131 -668.52957119 
    12392 -0.18253076 0.90561199 0.38281777 -124.05437106 
    12393 -0.13798172 -0.40910041 0.90199662 44.05927998 
    12394 Axis -0.87041873 0.37107962 -0.32352920 
    12395 Axis point 0.00000000 303.52185212 904.51087593 
    12396 Rotation angle (degrees) 27.05891488 
    12397 Shift along axis 521.61214860 
    12398  
    12399 
    12400 > combine #21 modelId #22 name Cj-FliL
    12401 
    12402 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.2 to 'C' 
    12403 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.3 to 'D' 
    12404 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.4 to 'E' 
    12405 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.5 to 'F' 
    12406 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.6 to 'G' 
    12407 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.7 to 'H' 
    12408 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.8 to 'I' 
    12409 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.9 to 'J' 
    12410 Remapping chain ID 'B' in Cj-FliLringC17.pdb #21.10 to 'K' 
    12411 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.11 to 'A' 
    12412 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.12 to 'L' 
    12413 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.13 to 'M' 
    12414 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.14 to 'N' 
    12415 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.15 to 'O' 
    12416 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.16 to 'P' 
    12417 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.17 to 'Q' 
    12418 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.18 to 'R' 
    12419 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.19 to 'S' 
    12420 Remapping chain ID ' ' in Cj-FliLringC17.pdb #21.20 to 'T' 
    12421 
    12422 > close #21
    12423 
    12424 > select add #22
    12425 
    12426 19700 atoms, 19900 bonds, 2440 residues, 2 models selected 
    12427 
    12428 > select subtract #18
    12429 
    12430 9850 atoms, 9950 bonds, 1220 residues, 1 model selected 
    12431 
    12432 > view matrix models #22,1,0,0,11.87,0,1,0,-455.3,0,0,1,-341.08
    12433 
    12434 > view matrix models #22,1,0,0,-507.9,0,1,0,-338.33,0,0,1,-160.15
    12435 
    12436 > view matrix models #22,1,0,0,-568.6,0,1,0,-385.42,0,0,1,-312.91
    12437 
    12438 > view matrix models #22,1,0,0,-557.67,0,1,0,-367.42,0,0,1,-315.9
    12439 
    12440 > fitmap #22 inMap #4
    12441 
    12442 Fit molecule Cj-FliL (#22) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12443 average map value = 0.01111, steps = 152 
    12444 shifted from previous position = 8 
    12445 rotated from previous position = 30.2 degrees 
    12446 atoms outside contour = 4331, contour level = 0.0029 
    12447  
    12448 Position of Cj-FliL (#22) relative to FliL.mrc gaussian (#4) coordinates: 
    12449 Matrix rotation and translation 
    12450 0.88960038 0.01753559 0.45640296 -691.78157037 
    12451 -0.12269540 0.97170740 0.20181816 -343.47684430 
    12452 -0.43995113 -0.23553606 0.86658281 228.11215813 
    12453 Axis -0.43424014 0.88997180 -0.13923251 
    12454 Axis point 33.94104032 0.00000000 1559.18250017 
    12455 Rotation angle (degrees) 30.23751103 
    12456 Shift along axis -37.04601017 
    12457  
    12458 
    12459 > fitmap #22 inMap #4
    12460 
    12461 Fit molecule Cj-FliL (#22) to map FliL.mrc gaussian (#4) using 9850 atoms 
    12462 average map value = 0.01111, steps = 44 
    12463 shifted from previous position = 0.0322 
    12464 rotated from previous position = 0.0603 degrees 
    12465 atoms outside contour = 4334, contour level = 0.0029 
    12466  
    12467 Position of Cj-FliL (#22) relative to FliL.mrc gaussian (#4) coordinates: 
    12468 Matrix rotation and translation 
    12469 0.88948500 0.01849848 0.45658979 -692.23623286 
    12470 -0.12373404 0.97160376 0.20168296 -342.51158062 
    12471 -0.43989353 -0.23588967 0.86651587 228.26163190 
    12472 Axis -0.43424554 0.88966690 -0.14115105 
    12473 Axis point 34.18728538 0.00000000 1558.93754237 
    12474 Rotation angle (degrees) 30.25377436 
    12475 Shift along axis -36.34008748 
    12476  
    12477 
    12478 > select subtract #22
    12479 
    12480 Nothing selected 
    12481 
    12482 > show #!19 models
    12483 
    12484 > show #16 models
    12485 
    12486 > show #!5 models
    12487 
    12488 > show #!7 models
    12489 
    12490 > hide #!7 models
    12491 
    12492 > show #!7 models
    12493 
    12494 > hide #!7 models
    12495 
    12496 > show #!7 models
    12497 
    12498 > hide #!7 models
    12499 
    12500 > show #!7 models
    12501 
    12502 > hide #!7 models
    12503 
    12504 > show #!7 models
    12505 
    12506 > show #!1.6 models
    12507 
    12508 > hide #!1.6 models
    12509 
    12510 > show #!1.6 models
    12511 
    12512 > hide #!1.6 models
    12513 
    12514 > ui tool show Segmentations
    12515 
    12516 > ui view fourup
    12517 
    12518 > segmentations mouseModes false
    12519 
    12520 Mouse bindings not saved; ignoring 'mouseModes false' 
    12521 
    12522 > ui view fourup
    12523 
    12524 > undo
    12525 
    12526 > segmentations mouseModes false
    12527 
    12528 Mouse bindings not saved; ignoring 'mouseModes false' 
    12529 
    12530 The cached device pixel ratio value was stale on window expose. Please file a
    12531 QTBUG which explains how to reproduce. 
    12532 
    12533 [Repeated 1 time(s)]
    12534 
    12535 > close #24
    12536 
    12537 > close #23
    12538 
    12539 > close #21
    12540 
    12541 Traceback (most recent call last): 
    12542 File
    12543 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12544 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    12545 self.enterEvent() 
    12546 File
    12547 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12548 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    12549 self.segmentation_tool.make_puck_visible(self.axis) 
    12550 File
    12551 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12552 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    12553 make_puck_visible 
    12554 self.segmentation_cursors[axis].display = True 
    12555 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12556 File
    12557 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12558 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    12559 super(Drawing, self).__setattr__(key, value) 
    12560 File
    12561 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12562 packages/chimerax/core/models.py", line 345, in _set_display 
    12563 Drawing.set_display(self, display) 
    12564 File
    12565 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12566 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    12567 dp = self.display_positions 
    12568 ^^^^^^^^^^^^^^^^^^^^^^ 
    12569 File
    12570 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12571 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    12572 dp = ones((len(self._positions),), bool) 
    12573 ^^^^^^^^^^^^^^^^^^^^ 
    12574 TypeError: object of type 'NoneType' has no len() 
    12575  
    12576 Error in sys.excepthook: 
    12577 Traceback (most recent call last): 
    12578 File
    12579 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12580 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    12581 self.leaveEvent() 
    12582 File
    12583 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12584 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    12585 self.segmentation_tool.make_puck_invisible(self.axis) 
    12586 File
    12587 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12588 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    12589 make_puck_invisible 
    12590 self.segmentation_cursors[axis].display = False 
    12591 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12592 File
    12593 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12594 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    12595 super(Drawing, self).__setattr__(key, value) 
    12596 File
    12597 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12598 packages/chimerax/core/models.py", line 345, in _set_display 
    12599 Drawing.set_display(self, display) 
    12600 File
    12601 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12602 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    12603 dp = self.display_positions 
    12604 ^^^^^^^^^^^^^^^^^^^^^^ 
    12605 File
    12606 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12607 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    12608 dp = ones((len(self._positions),), bool) 
    12609 ^^^^^^^^^^^^^^^^^^^^ 
    12610 TypeError: object of type 'NoneType' has no len() 
    12611  
    12612 The above exception was the direct cause of the following exception: 
    12613  
    12614 SystemError:  returned a result with an exception
    12615 set 
    12616  
    12617 The above exception was the direct cause of the following exception: 
    12618  
    12619 SystemError:  returned a result with an exception
    12620 set 
    12621  
    12622 The above exception was the direct cause of the following exception: 
    12623  
    12624 SystemError:  returned a result with an exception
    12625 set 
    12626  
    12627 The above exception was the direct cause of the following exception: 
    12628  
    12629 SystemError:  returned a result with an exception
    12630 set 
    12631  
    12632 The above exception was the direct cause of the following exception: 
    12633  
    12634 SystemError:  returned a result with an exception
    12635 set 
    12636  
    12637 The above exception was the direct cause of the following exception: 
    12638  
    12639 SystemError:  returned a result with an exception
    12640 set 
    12641  
    12642 The above exception was the direct cause of the following exception: 
    12643  
    12644 SystemError:  returned a result with an
    12645 exception set 
    12646  
    12647 The above exception was the direct cause of the following exception: 
    12648  
    12649 SystemError:  returned a result with an
    12650 exception set 
    12651  
    12652 The above exception was the direct cause of the following exception: 
    12653  
    12654 SystemError:  returned a result with an
    12655 exception set 
    12656  
    12657 The above exception was the direct cause of the following exception: 
    12658  
    12659 SystemError:  returned a result with an
    12660 exception set 
    12661  
    12662 The above exception was the direct cause of the following exception: 
    12663  
    12664 SystemError:  returned a result with an
    12665 exception set 
    12666  
    12667 The above exception was the direct cause of the following exception: 
    12668  
    12669 SystemError:  returned a result with an
    12670 exception set 
    12671  
    12672 The above exception was the direct cause of the following exception: 
    12673  
    12674 Traceback (most recent call last): 
    12675 File
    12676 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12677 packages/chimerax/core/logger.py", line 334, in ehook 
    12678 self.session.ui.thread_safe( 
    12679 File
    12680 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12681 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    12682 func(*args, **kw) 
    12683 File
    12684 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12685 packages/chimerax/core/logger.py", line 516, in report_exception 
    12686 self.bug(err_msg.replace("\n", "
    12687 "), is_html=True) 
    12688 File
    12689 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12690 packages/chimerax/core/logger.py", line 394, in bug 
    12691 self._log( 
    12692 File
    12693 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12694 packages/chimerax/core/logger.py", line 572, in _log 
    12695 if log.log(*args): 
    12696 ^^^^^^^^^^^^^^ 
    12697 File
    12698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12699 packages/chimerax/log/tool.py", line 342, in log 
    12700 self.session.ui.thread_safe(f) 
    12701 File
    12702 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12703 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    12704 func(*args, **kw) 
    12705 File
    12706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12707 packages/chimerax/log/tool.py", line 341, in   
    12708 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    12709 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12710 File
    12711 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12712 packages/chimerax/log/tool.py", line 262, in show_error_message 
    12713 ed.showMessage(msg) 
    12714 SystemError:  returned a result with an exception set 
    12715  
    12716 Original exception was: 
    12717 Traceback (most recent call last): 
    12718 File
    12719 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12720 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    12721 self.enterEvent() 
    12722 File
    12723 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12724 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    12725 self.segmentation_tool.make_puck_visible(self.axis) 
    12726 File
    12727 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12728 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    12729 make_puck_visible 
    12730 self.segmentation_cursors[axis].display = True 
    12731 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12732 File
    12733 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12734 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    12735 super(Drawing, self).__setattr__(key, value) 
    12736 File
    12737 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12738 packages/chimerax/core/models.py", line 345, in _set_display 
    12739 Drawing.set_display(self, display) 
    12740 File
    12741 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12742 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    12743 dp = self.display_positions 
    12744 ^^^^^^^^^^^^^^^^^^^^^^ 
    12745 File
    12746 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12747 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    12748 dp = ones((len(self._positions),), bool) 
    12749 ^^^^^^^^^^^^^^^^^^^^ 
    12750 TypeError: object of type 'NoneType' has no len() 
    12751 Traceback (most recent call last): 
    12752 File
    12753 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12754 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    12755 self.enterEvent() 
    12756 File
    12757 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12758 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    12759 self.segmentation_tool.make_puck_visible(self.axis) 
    12760 File
    12761 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12762 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    12763 make_puck_visible 
    12764 self.segmentation_cursors[axis].display = True 
    12765 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12766 File
    12767 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12768 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    12769 super(Drawing, self).__setattr__(key, value) 
    12770 File
    12771 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12772 packages/chimerax/core/models.py", line 345, in _set_display 
    12773 Drawing.set_display(self, display) 
    12774 File
    12775 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12776 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    12777 dp = self.display_positions 
    12778 ^^^^^^^^^^^^^^^^^^^^^^ 
    12779 File
    12780 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12781 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    12782 dp = ones((len(self._positions),), bool) 
    12783 ^^^^^^^^^^^^^^^^^^^^ 
    12784 TypeError: object of type 'NoneType' has no len() 
    12785  
    12786 Error in sys.excepthook: 
    12787 Traceback (most recent call last): 
    12788 File
    12789 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12790 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    12791 self.leaveEvent() 
    12792 File
    12793 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12794 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    12795 self.segmentation_tool.make_puck_invisible(self.axis) 
    12796 File
    12797 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12798 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    12799 make_puck_invisible 
    12800 self.segmentation_cursors[axis].display = False 
    12801 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12802 File
    12803 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12804 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    12805 super(Drawing, self).__setattr__(key, value) 
    12806 File
    12807 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12808 packages/chimerax/core/models.py", line 345, in _set_display 
    12809 Drawing.set_display(self, display) 
    12810 File
    12811 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12812 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    12813 dp = self.display_positions 
    12814 ^^^^^^^^^^^^^^^^^^^^^^ 
    12815 File
    12816 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12817 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    12818 dp = ones((len(self._positions),), bool) 
    12819 ^^^^^^^^^^^^^^^^^^^^ 
    12820 TypeError: object of type 'NoneType' has no len() 
    12821  
    12822 The above exception was the direct cause of the following exception: 
    12823  
    12824 SystemError:  returned a result with an exception
    12825 set 
    12826  
    12827 The above exception was the direct cause of the following exception: 
    12828  
    12829 SystemError:  returned a result with an exception
    12830 set 
    12831  
    12832 The above exception was the direct cause of the following exception: 
    12833  
    12834 SystemError:  returned a result with an exception
    12835 set 
    12836  
    12837 The above exception was the direct cause of the following exception: 
    12838  
    12839 SystemError:  returned a result with an exception
    12840 set 
    12841  
    12842 The above exception was the direct cause of the following exception: 
    12843  
    12844 SystemError:  returned a result with an exception
    12845 set 
    12846  
    12847 The above exception was the direct cause of the following exception: 
    12848  
    12849 SystemError:  returned a result with an exception
    12850 set 
    12851  
    12852 The above exception was the direct cause of the following exception: 
    12853  
    12854 SystemError:  returned a result with an
    12855 exception set 
    12856  
    12857 The above exception was the direct cause of the following exception: 
    12858  
    12859 SystemError:  returned a result with an
    12860 exception set 
    12861  
    12862 The above exception was the direct cause of the following exception: 
    12863  
    12864 SystemError:  returned a result with an
    12865 exception set 
    12866  
    12867 The above exception was the direct cause of the following exception: 
    12868  
    12869 SystemError:  returned a result with an
    12870 exception set 
    12871  
    12872 The above exception was the direct cause of the following exception: 
    12873  
    12874 SystemError:  returned a result with an
    12875 exception set 
    12876  
    12877 The above exception was the direct cause of the following exception: 
    12878  
    12879 SystemError:  returned a result with an
    12880 exception set 
    12881  
    12882 The above exception was the direct cause of the following exception: 
    12883  
    12884 Traceback (most recent call last): 
    12885 File
    12886 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12887 packages/chimerax/core/logger.py", line 334, in ehook 
    12888 self.session.ui.thread_safe( 
    12889 File
    12890 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12891 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    12892 func(*args, **kw) 
    12893 File
    12894 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12895 packages/chimerax/core/logger.py", line 516, in report_exception 
    12896 self.bug(err_msg.replace("\n", "
    12897 "), is_html=True) 
    12898 File
    12899 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12900 packages/chimerax/core/logger.py", line 394, in bug 
    12901 self._log( 
    12902 File
    12903 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12904 packages/chimerax/core/logger.py", line 572, in _log 
    12905 if log.log(*args): 
    12906 ^^^^^^^^^^^^^^ 
    12907 File
    12908 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12909 packages/chimerax/log/tool.py", line 342, in log 
    12910 self.session.ui.thread_safe(f) 
    12911 File
    12912 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12913 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    12914 func(*args, **kw) 
    12915 File
    12916 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12917 packages/chimerax/log/tool.py", line 341, in   
    12918 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    12919 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12920 File
    12921 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12922 packages/chimerax/log/tool.py", line 262, in show_error_message 
    12923 ed.showMessage(msg) 
    12924 SystemError:  returned a result with an exception set 
    12925  
    12926 Original exception was: 
    12927 Traceback (most recent call last): 
    12928 File
    12929 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12930 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    12931 self.enterEvent() 
    12932 File
    12933 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12934 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    12935 self.segmentation_tool.make_puck_visible(self.axis) 
    12936 File
    12937 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12938 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    12939 make_puck_visible 
    12940 self.segmentation_cursors[axis].display = True 
    12941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12942 File
    12943 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12944 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    12945 super(Drawing, self).__setattr__(key, value) 
    12946 File
    12947 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12948 packages/chimerax/core/models.py", line 345, in _set_display 
    12949 Drawing.set_display(self, display) 
    12950 File
    12951 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12952 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    12953 dp = self.display_positions 
    12954 ^^^^^^^^^^^^^^^^^^^^^^ 
    12955 File
    12956 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12957 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    12958 dp = ones((len(self._positions),), bool) 
    12959 ^^^^^^^^^^^^^^^^^^^^ 
    12960 TypeError: object of type 'NoneType' has no len() 
    12961 Traceback (most recent call last): 
    12962 File
    12963 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12964 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    12965 self.enterEvent() 
    12966 File
    12967 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12968 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    12969 self.segmentation_tool.make_puck_visible(self.axis) 
    12970 File
    12971 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12972 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    12973 make_puck_visible 
    12974 self.segmentation_cursors[axis].display = True 
    12975 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    12976 File
    12977 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12978 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    12979 super(Drawing, self).__setattr__(key, value) 
    12980 File
    12981 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12982 packages/chimerax/core/models.py", line 345, in _set_display 
    12983 Drawing.set_display(self, display) 
    12984 File
    12985 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12986 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    12987 dp = self.display_positions 
    12988 ^^^^^^^^^^^^^^^^^^^^^^ 
    12989 File
    12990 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    12991 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    12992 dp = ones((len(self._positions),), bool) 
    12993 ^^^^^^^^^^^^^^^^^^^^ 
    12994 TypeError: object of type 'NoneType' has no len() 
    12995  
    12996 Error in sys.excepthook: 
    12997 Traceback (most recent call last): 
    12998 File
    12999 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13000 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    13001 self.leaveEvent() 
    13002 File
    13003 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13004 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    13005 self.segmentation_tool.make_puck_invisible(self.axis) 
    13006 File
    13007 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13008 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    13009 make_puck_invisible 
    13010 self.segmentation_cursors[axis].display = False 
    13011 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13012 File
    13013 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13014 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13015 super(Drawing, self).__setattr__(key, value) 
    13016 File
    13017 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13018 packages/chimerax/core/models.py", line 345, in _set_display 
    13019 Drawing.set_display(self, display) 
    13020 File
    13021 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13022 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13023 dp = self.display_positions 
    13024 ^^^^^^^^^^^^^^^^^^^^^^ 
    13025 File
    13026 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13027 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13028 dp = ones((len(self._positions),), bool) 
    13029 ^^^^^^^^^^^^^^^^^^^^ 
    13030 TypeError: object of type 'NoneType' has no len() 
    13031  
    13032 The above exception was the direct cause of the following exception: 
    13033  
    13034 SystemError:  returned a result with an exception
    13035 set 
    13036  
    13037 The above exception was the direct cause of the following exception: 
    13038  
    13039 SystemError:  returned a result with an exception
    13040 set 
    13041  
    13042 The above exception was the direct cause of the following exception: 
    13043  
    13044 SystemError:  returned a result with an exception
    13045 set 
    13046  
    13047 The above exception was the direct cause of the following exception: 
    13048  
    13049 SystemError:  returned a result with an exception
    13050 set 
    13051  
    13052 The above exception was the direct cause of the following exception: 
    13053  
    13054 SystemError:  returned a result with an exception
    13055 set 
    13056  
    13057 The above exception was the direct cause of the following exception: 
    13058  
    13059 SystemError:  returned a result with an exception
    13060 set 
    13061  
    13062 The above exception was the direct cause of the following exception: 
    13063  
    13064 SystemError:  returned a result with an
    13065 exception set 
    13066  
    13067 The above exception was the direct cause of the following exception: 
    13068  
    13069 SystemError:  returned a result with an
    13070 exception set 
    13071  
    13072 The above exception was the direct cause of the following exception: 
    13073  
    13074 SystemError:  returned a result with an
    13075 exception set 
    13076  
    13077 The above exception was the direct cause of the following exception: 
    13078  
    13079 SystemError:  returned a result with an
    13080 exception set 
    13081  
    13082 The above exception was the direct cause of the following exception: 
    13083  
    13084 SystemError:  returned a result with an
    13085 exception set 
    13086  
    13087 The above exception was the direct cause of the following exception: 
    13088  
    13089 SystemError:  returned a result with an
    13090 exception set 
    13091  
    13092 The above exception was the direct cause of the following exception: 
    13093  
    13094 Traceback (most recent call last): 
    13095 File
    13096 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13097 packages/chimerax/core/logger.py", line 334, in ehook 
    13098 self.session.ui.thread_safe( 
    13099 File
    13100 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13101 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13102 func(*args, **kw) 
    13103 File
    13104 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13105 packages/chimerax/core/logger.py", line 516, in report_exception 
    13106 self.bug(err_msg.replace("\n", "
    13107 "), is_html=True) 
    13108 File
    13109 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13110 packages/chimerax/core/logger.py", line 394, in bug 
    13111 self._log( 
    13112 File
    13113 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13114 packages/chimerax/core/logger.py", line 572, in _log 
    13115 if log.log(*args): 
    13116 ^^^^^^^^^^^^^^ 
    13117 File
    13118 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13119 packages/chimerax/log/tool.py", line 342, in log 
    13120 self.session.ui.thread_safe(f) 
    13121 File
    13122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13123 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13124 func(*args, **kw) 
    13125 File
    13126 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13127 packages/chimerax/log/tool.py", line 341, in   
    13128 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    13129 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13130 File
    13131 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13132 packages/chimerax/log/tool.py", line 262, in show_error_message 
    13133 ed.showMessage(msg) 
    13134 SystemError:  returned a result with an exception set 
    13135  
    13136 Original exception was: 
    13137 Traceback (most recent call last): 
    13138 File
    13139 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13140 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13141 self.enterEvent() 
    13142 File
    13143 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13144 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13145 self.segmentation_tool.make_puck_visible(self.axis) 
    13146 File
    13147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13148 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13149 make_puck_visible 
    13150 self.segmentation_cursors[axis].display = True 
    13151 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13152 File
    13153 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13154 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13155 super(Drawing, self).__setattr__(key, value) 
    13156 File
    13157 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13158 packages/chimerax/core/models.py", line 345, in _set_display 
    13159 Drawing.set_display(self, display) 
    13160 File
    13161 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13162 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13163 dp = self.display_positions 
    13164 ^^^^^^^^^^^^^^^^^^^^^^ 
    13165 File
    13166 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13167 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13168 dp = ones((len(self._positions),), bool) 
    13169 ^^^^^^^^^^^^^^^^^^^^ 
    13170 TypeError: object of type 'NoneType' has no len() 
    13171 Traceback (most recent call last): 
    13172 File
    13173 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13174 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13175 self.enterEvent() 
    13176 File
    13177 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13178 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13179 self.segmentation_tool.make_puck_visible(self.axis) 
    13180 File
    13181 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13182 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13183 make_puck_visible 
    13184 self.segmentation_cursors[axis].display = True 
    13185 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13186 File
    13187 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13188 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13189 super(Drawing, self).__setattr__(key, value) 
    13190 File
    13191 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13192 packages/chimerax/core/models.py", line 345, in _set_display 
    13193 Drawing.set_display(self, display) 
    13194 File
    13195 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13196 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13197 dp = self.display_positions 
    13198 ^^^^^^^^^^^^^^^^^^^^^^ 
    13199 File
    13200 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13201 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13202 dp = ones((len(self._positions),), bool) 
    13203 ^^^^^^^^^^^^^^^^^^^^ 
    13204 TypeError: object of type 'NoneType' has no len() 
    13205  
    13206 Error in sys.excepthook: 
    13207 Traceback (most recent call last): 
    13208 File
    13209 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13210 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    13211 self.leaveEvent() 
    13212 File
    13213 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13214 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    13215 self.segmentation_tool.make_puck_invisible(self.axis) 
    13216 File
    13217 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13218 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    13219 make_puck_invisible 
    13220 self.segmentation_cursors[axis].display = False 
    13221 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13222 File
    13223 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13224 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13225 super(Drawing, self).__setattr__(key, value) 
    13226 File
    13227 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13228 packages/chimerax/core/models.py", line 345, in _set_display 
    13229 Drawing.set_display(self, display) 
    13230 File
    13231 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13232 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13233 dp = self.display_positions 
    13234 ^^^^^^^^^^^^^^^^^^^^^^ 
    13235 File
    13236 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13237 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13238 dp = ones((len(self._positions),), bool) 
    13239 ^^^^^^^^^^^^^^^^^^^^ 
    13240 TypeError: object of type 'NoneType' has no len() 
    13241  
    13242 The above exception was the direct cause of the following exception: 
    13243  
    13244 SystemError:  returned a result with an exception
    13245 set 
    13246  
    13247 The above exception was the direct cause of the following exception: 
    13248  
    13249 SystemError:  returned a result with an exception
    13250 set 
    13251  
    13252 The above exception was the direct cause of the following exception: 
    13253  
    13254 SystemError:  returned a result with an exception
    13255 set 
    13256  
    13257 The above exception was the direct cause of the following exception: 
    13258  
    13259 SystemError:  returned a result with an exception
    13260 set 
    13261  
    13262 The above exception was the direct cause of the following exception: 
    13263  
    13264 SystemError:  returned a result with an exception
    13265 set 
    13266  
    13267 The above exception was the direct cause of the following exception: 
    13268  
    13269 SystemError:  returned a result with an exception
    13270 set 
    13271  
    13272 The above exception was the direct cause of the following exception: 
    13273  
    13274 SystemError:  returned a result with an
    13275 exception set 
    13276  
    13277 The above exception was the direct cause of the following exception: 
    13278  
    13279 SystemError:  returned a result with an
    13280 exception set 
    13281  
    13282 The above exception was the direct cause of the following exception: 
    13283  
    13284 SystemError:  returned a result with an
    13285 exception set 
    13286  
    13287 The above exception was the direct cause of the following exception: 
    13288  
    13289 SystemError:  returned a result with an
    13290 exception set 
    13291  
    13292 The above exception was the direct cause of the following exception: 
    13293  
    13294 SystemError:  returned a result with an
    13295 exception set 
    13296  
    13297 The above exception was the direct cause of the following exception: 
    13298  
    13299 SystemError:  returned a result with an
    13300 exception set 
    13301  
    13302 The above exception was the direct cause of the following exception: 
    13303  
    13304 Traceback (most recent call last): 
    13305 File
    13306 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13307 packages/chimerax/core/logger.py", line 334, in ehook 
    13308 self.session.ui.thread_safe( 
    13309 File
    13310 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13311 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13312 func(*args, **kw) 
    13313 File
    13314 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13315 packages/chimerax/core/logger.py", line 516, in report_exception 
    13316 self.bug(err_msg.replace("\n", "
    13317 "), is_html=True) 
    13318 File
    13319 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13320 packages/chimerax/core/logger.py", line 394, in bug 
    13321 self._log( 
    13322 File
    13323 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13324 packages/chimerax/core/logger.py", line 572, in _log 
    13325 if log.log(*args): 
    13326 ^^^^^^^^^^^^^^ 
    13327 File
    13328 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13329 packages/chimerax/log/tool.py", line 342, in log 
    13330 self.session.ui.thread_safe(f) 
    13331 File
    13332 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13333 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13334 func(*args, **kw) 
    13335 File
    13336 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13337 packages/chimerax/log/tool.py", line 341, in   
    13338 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    13339 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13340 File
    13341 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13342 packages/chimerax/log/tool.py", line 262, in show_error_message 
    13343 ed.showMessage(msg) 
    13344 SystemError:  returned a result with an exception set 
    13345  
    13346 Original exception was: 
    13347 Traceback (most recent call last): 
    13348 File
    13349 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13350 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13351 self.enterEvent() 
    13352 File
    13353 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13354 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13355 self.segmentation_tool.make_puck_visible(self.axis) 
    13356 File
    13357 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13358 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13359 make_puck_visible 
    13360 self.segmentation_cursors[axis].display = True 
    13361 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13362 File
    13363 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13364 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13365 super(Drawing, self).__setattr__(key, value) 
    13366 File
    13367 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13368 packages/chimerax/core/models.py", line 345, in _set_display 
    13369 Drawing.set_display(self, display) 
    13370 File
    13371 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13372 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13373 dp = self.display_positions 
    13374 ^^^^^^^^^^^^^^^^^^^^^^ 
    13375 File
    13376 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13377 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13378 dp = ones((len(self._positions),), bool) 
    13379 ^^^^^^^^^^^^^^^^^^^^ 
    13380 TypeError: object of type 'NoneType' has no len() 
    13381 Traceback (most recent call last): 
    13382 File
    13383 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13384 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13385 self.enterEvent() 
    13386 File
    13387 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13388 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13389 self.segmentation_tool.make_puck_visible(self.axis) 
    13390 File
    13391 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13392 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13393 make_puck_visible 
    13394 self.segmentation_cursors[axis].display = True 
    13395 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13396 File
    13397 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13398 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13399 super(Drawing, self).__setattr__(key, value) 
    13400 File
    13401 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13402 packages/chimerax/core/models.py", line 345, in _set_display 
    13403 Drawing.set_display(self, display) 
    13404 File
    13405 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13406 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13407 dp = self.display_positions 
    13408 ^^^^^^^^^^^^^^^^^^^^^^ 
    13409 File
    13410 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13411 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13412 dp = ones((len(self._positions),), bool) 
    13413 ^^^^^^^^^^^^^^^^^^^^ 
    13414 TypeError: object of type 'NoneType' has no len() 
    13415  
    13416 Error in sys.excepthook: 
    13417 Traceback (most recent call last): 
    13418 File
    13419 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13420 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    13421 self.leaveEvent() 
    13422 File
    13423 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13424 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    13425 self.segmentation_tool.make_puck_invisible(self.axis) 
    13426 File
    13427 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13428 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    13429 make_puck_invisible 
    13430 self.segmentation_cursors[axis].display = False 
    13431 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13432 File
    13433 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13434 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13435 super(Drawing, self).__setattr__(key, value) 
    13436 File
    13437 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13438 packages/chimerax/core/models.py", line 345, in _set_display 
    13439 Drawing.set_display(self, display) 
    13440 File
    13441 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13442 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13443 dp = self.display_positions 
    13444 ^^^^^^^^^^^^^^^^^^^^^^ 
    13445 File
    13446 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13447 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13448 dp = ones((len(self._positions),), bool) 
    13449 ^^^^^^^^^^^^^^^^^^^^ 
    13450 TypeError: object of type 'NoneType' has no len() 
    13451  
    13452 The above exception was the direct cause of the following exception: 
    13453  
    13454 SystemError:  returned a result with an exception
    13455 set 
    13456  
    13457 The above exception was the direct cause of the following exception: 
    13458  
    13459 SystemError:  returned a result with an exception
    13460 set 
    13461  
    13462 The above exception was the direct cause of the following exception: 
    13463  
    13464 SystemError:  returned a result with an exception
    13465 set 
    13466  
    13467 The above exception was the direct cause of the following exception: 
    13468  
    13469 SystemError:  returned a result with an exception
    13470 set 
    13471  
    13472 The above exception was the direct cause of the following exception: 
    13473  
    13474 SystemError:  returned a result with an exception
    13475 set 
    13476  
    13477 The above exception was the direct cause of the following exception: 
    13478  
    13479 SystemError:  returned a result with an exception
    13480 set 
    13481  
    13482 The above exception was the direct cause of the following exception: 
    13483  
    13484 SystemError:  returned a result with an
    13485 exception set 
    13486  
    13487 The above exception was the direct cause of the following exception: 
    13488  
    13489 SystemError:  returned a result with an
    13490 exception set 
    13491  
    13492 The above exception was the direct cause of the following exception: 
    13493  
    13494 SystemError:  returned a result with an
    13495 exception set 
    13496  
    13497 The above exception was the direct cause of the following exception: 
    13498  
    13499 SystemError:  returned a result with an
    13500 exception set 
    13501  
    13502 The above exception was the direct cause of the following exception: 
    13503  
    13504 SystemError:  returned a result with an
    13505 exception set 
    13506  
    13507 The above exception was the direct cause of the following exception: 
    13508  
    13509 SystemError:  returned a result with an
    13510 exception set 
    13511  
    13512 The above exception was the direct cause of the following exception: 
    13513  
    13514 Traceback (most recent call last): 
    13515 File
    13516 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13517 packages/chimerax/core/logger.py", line 334, in ehook 
    13518 self.session.ui.thread_safe( 
    13519 File
    13520 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13521 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13522 func(*args, **kw) 
    13523 File
    13524 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13525 packages/chimerax/core/logger.py", line 516, in report_exception 
    13526 self.bug(err_msg.replace("\n", "
    13527 "), is_html=True) 
    13528 File
    13529 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13530 packages/chimerax/core/logger.py", line 394, in bug 
    13531 self._log( 
    13532 File
    13533 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13534 packages/chimerax/core/logger.py", line 572, in _log 
    13535 if log.log(*args): 
    13536 ^^^^^^^^^^^^^^ 
    13537 File
    13538 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13539 packages/chimerax/log/tool.py", line 342, in log 
    13540 self.session.ui.thread_safe(f) 
    13541 File
    13542 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13543 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13544 func(*args, **kw) 
    13545 File
    13546 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13547 packages/chimerax/log/tool.py", line 341, in   
    13548 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    13549 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13550 File
    13551 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13552 packages/chimerax/log/tool.py", line 262, in show_error_message 
    13553 ed.showMessage(msg) 
    13554 SystemError:  returned a result with an exception set 
    13555  
    13556 Original exception was: 
    13557 Traceback (most recent call last): 
    13558 File
    13559 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13560 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13561 self.enterEvent() 
    13562 File
    13563 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13564 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13565 self.segmentation_tool.make_puck_visible(self.axis) 
    13566 File
    13567 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13568 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13569 make_puck_visible 
    13570 self.segmentation_cursors[axis].display = True 
    13571 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13572 File
    13573 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13574 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13575 super(Drawing, self).__setattr__(key, value) 
    13576 File
    13577 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13578 packages/chimerax/core/models.py", line 345, in _set_display 
    13579 Drawing.set_display(self, display) 
    13580 File
    13581 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13582 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13583 dp = self.display_positions 
    13584 ^^^^^^^^^^^^^^^^^^^^^^ 
    13585 File
    13586 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13587 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13588 dp = ones((len(self._positions),), bool) 
    13589 ^^^^^^^^^^^^^^^^^^^^ 
    13590 TypeError: object of type 'NoneType' has no len() 
    13591 Traceback (most recent call last): 
    13592 File
    13593 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13594 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13595 self.enterEvent() 
    13596 File
    13597 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13598 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13599 self.segmentation_tool.make_puck_visible(self.axis) 
    13600 File
    13601 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13602 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13603 make_puck_visible 
    13604 self.segmentation_cursors[axis].display = True 
    13605 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13606 File
    13607 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13608 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13609 super(Drawing, self).__setattr__(key, value) 
    13610 File
    13611 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13612 packages/chimerax/core/models.py", line 345, in _set_display 
    13613 Drawing.set_display(self, display) 
    13614 File
    13615 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13616 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13617 dp = self.display_positions 
    13618 ^^^^^^^^^^^^^^^^^^^^^^ 
    13619 File
    13620 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13621 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13622 dp = ones((len(self._positions),), bool) 
    13623 ^^^^^^^^^^^^^^^^^^^^ 
    13624 TypeError: object of type 'NoneType' has no len() 
    13625  
    13626 Error in sys.excepthook: 
    13627 Traceback (most recent call last): 
    13628 File
    13629 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13630 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    13631 self.leaveEvent() 
    13632 File
    13633 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13634 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    13635 self.segmentation_tool.make_puck_invisible(self.axis) 
    13636 File
    13637 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13638 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    13639 make_puck_invisible 
    13640 self.segmentation_cursors[axis].display = False 
    13641 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13642 File
    13643 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13644 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13645 super(Drawing, self).__setattr__(key, value) 
    13646 File
    13647 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13648 packages/chimerax/core/models.py", line 345, in _set_display 
    13649 Drawing.set_display(self, display) 
    13650 File
    13651 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13652 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13653 dp = self.display_positions 
    13654 ^^^^^^^^^^^^^^^^^^^^^^ 
    13655 File
    13656 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13657 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13658 dp = ones((len(self._positions),), bool) 
    13659 ^^^^^^^^^^^^^^^^^^^^ 
    13660 TypeError: object of type 'NoneType' has no len() 
    13661  
    13662 The above exception was the direct cause of the following exception: 
    13663  
    13664 SystemError:  returned a result with an exception
    13665 set 
    13666  
    13667 The above exception was the direct cause of the following exception: 
    13668  
    13669 SystemError:  returned a result with an exception
    13670 set 
    13671  
    13672 The above exception was the direct cause of the following exception: 
    13673  
    13674 SystemError:  returned a result with an exception
    13675 set 
    13676  
    13677 The above exception was the direct cause of the following exception: 
    13678  
    13679 SystemError:  returned a result with an exception
    13680 set 
    13681  
    13682 The above exception was the direct cause of the following exception: 
    13683  
    13684 SystemError:  returned a result with an exception
    13685 set 
    13686  
    13687 The above exception was the direct cause of the following exception: 
    13688  
    13689 SystemError:  returned a result with an exception
    13690 set 
    13691  
    13692 The above exception was the direct cause of the following exception: 
    13693  
    13694 SystemError:  returned a result with an
    13695 exception set 
    13696  
    13697 The above exception was the direct cause of the following exception: 
    13698  
    13699 SystemError:  returned a result with an
    13700 exception set 
    13701  
    13702 The above exception was the direct cause of the following exception: 
    13703  
    13704 SystemError:  returned a result with an
    13705 exception set 
    13706  
    13707 The above exception was the direct cause of the following exception: 
    13708  
    13709 SystemError:  returned a result with an
    13710 exception set 
    13711  
    13712 The above exception was the direct cause of the following exception: 
    13713  
    13714 SystemError:  returned a result with an
    13715 exception set 
    13716  
    13717 The above exception was the direct cause of the following exception: 
    13718  
    13719 SystemError:  returned a result with an
    13720 exception set 
    13721  
    13722 The above exception was the direct cause of the following exception: 
    13723  
    13724 Traceback (most recent call last): 
    13725 File
    13726 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13727 packages/chimerax/core/logger.py", line 334, in ehook 
    13728 self.session.ui.thread_safe( 
    13729 File
    13730 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13731 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13732 func(*args, **kw) 
    13733 File
    13734 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13735 packages/chimerax/core/logger.py", line 516, in report_exception 
    13736 self.bug(err_msg.replace("\n", "
    13737 "), is_html=True) 
    13738 File
    13739 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13740 packages/chimerax/core/logger.py", line 394, in bug 
    13741 self._log( 
    13742 File
    13743 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13744 packages/chimerax/core/logger.py", line 572, in _log 
    13745 if log.log(*args): 
    13746 ^^^^^^^^^^^^^^ 
    13747 File
    13748 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13749 packages/chimerax/log/tool.py", line 342, in log 
    13750 self.session.ui.thread_safe(f) 
    13751 File
    13752 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13753 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13754 func(*args, **kw) 
    13755 File
    13756 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13757 packages/chimerax/log/tool.py", line 341, in   
    13758 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    13759 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13760 File
    13761 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13762 packages/chimerax/log/tool.py", line 262, in show_error_message 
    13763 ed.showMessage(msg) 
    13764 SystemError:  returned a result with an exception set 
    13765  
    13766 Original exception was: 
    13767 Traceback (most recent call last): 
    13768 File
    13769 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13770 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13771 self.enterEvent() 
    13772 File
    13773 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13774 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13775 self.segmentation_tool.make_puck_visible(self.axis) 
    13776 File
    13777 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13778 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13779 make_puck_visible 
    13780 self.segmentation_cursors[axis].display = True 
    13781 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13782 File
    13783 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13784 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13785 super(Drawing, self).__setattr__(key, value) 
    13786 File
    13787 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13788 packages/chimerax/core/models.py", line 345, in _set_display 
    13789 Drawing.set_display(self, display) 
    13790 File
    13791 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13792 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13793 dp = self.display_positions 
    13794 ^^^^^^^^^^^^^^^^^^^^^^ 
    13795 File
    13796 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13797 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13798 dp = ones((len(self._positions),), bool) 
    13799 ^^^^^^^^^^^^^^^^^^^^ 
    13800 TypeError: object of type 'NoneType' has no len() 
    13801 Traceback (most recent call last): 
    13802 File
    13803 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13804 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13805 self.enterEvent() 
    13806 File
    13807 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13808 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13809 self.segmentation_tool.make_puck_visible(self.axis) 
    13810 File
    13811 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13812 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13813 make_puck_visible 
    13814 self.segmentation_cursors[axis].display = True 
    13815 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13816 File
    13817 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13818 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13819 super(Drawing, self).__setattr__(key, value) 
    13820 File
    13821 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13822 packages/chimerax/core/models.py", line 345, in _set_display 
    13823 Drawing.set_display(self, display) 
    13824 File
    13825 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13826 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13827 dp = self.display_positions 
    13828 ^^^^^^^^^^^^^^^^^^^^^^ 
    13829 File
    13830 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13831 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13832 dp = ones((len(self._positions),), bool) 
    13833 ^^^^^^^^^^^^^^^^^^^^ 
    13834 TypeError: object of type 'NoneType' has no len() 
    13835  
    13836 Error in sys.excepthook: 
    13837 Traceback (most recent call last): 
    13838 File
    13839 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13840 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    13841 self.leaveEvent() 
    13842 File
    13843 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13844 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    13845 self.segmentation_tool.make_puck_invisible(self.axis) 
    13846 File
    13847 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13848 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    13849 make_puck_invisible 
    13850 self.segmentation_cursors[axis].display = False 
    13851 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13852 File
    13853 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13854 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13855 super(Drawing, self).__setattr__(key, value) 
    13856 File
    13857 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13858 packages/chimerax/core/models.py", line 345, in _set_display 
    13859 Drawing.set_display(self, display) 
    13860 File
    13861 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13862 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    13863 dp = self.display_positions 
    13864 ^^^^^^^^^^^^^^^^^^^^^^ 
    13865 File
    13866 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13867 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    13868 dp = ones((len(self._positions),), bool) 
    13869 ^^^^^^^^^^^^^^^^^^^^ 
    13870 TypeError: object of type 'NoneType' has no len() 
    13871  
    13872 The above exception was the direct cause of the following exception: 
    13873  
    13874 SystemError:  returned a result with an exception
    13875 set 
    13876  
    13877 The above exception was the direct cause of the following exception: 
    13878  
    13879 SystemError:  returned a result with an exception
    13880 set 
    13881  
    13882 The above exception was the direct cause of the following exception: 
    13883  
    13884 SystemError:  returned a result with an exception
    13885 set 
    13886  
    13887 The above exception was the direct cause of the following exception: 
    13888  
    13889 SystemError:  returned a result with an exception
    13890 set 
    13891  
    13892 The above exception was the direct cause of the following exception: 
    13893  
    13894 SystemError:  returned a result with an exception
    13895 set 
    13896  
    13897 The above exception was the direct cause of the following exception: 
    13898  
    13899 SystemError:  returned a result with an exception
    13900 set 
    13901  
    13902 The above exception was the direct cause of the following exception: 
    13903  
    13904 SystemError:  returned a result with an
    13905 exception set 
    13906  
    13907 The above exception was the direct cause of the following exception: 
    13908  
    13909 SystemError:  returned a result with an
    13910 exception set 
    13911  
    13912 The above exception was the direct cause of the following exception: 
    13913  
    13914 SystemError:  returned a result with an
    13915 exception set 
    13916  
    13917 The above exception was the direct cause of the following exception: 
    13918  
    13919 SystemError:  returned a result with an
    13920 exception set 
    13921  
    13922 The above exception was the direct cause of the following exception: 
    13923  
    13924 SystemError:  returned a result with an
    13925 exception set 
    13926  
    13927 The above exception was the direct cause of the following exception: 
    13928  
    13929 SystemError:  returned a result with an
    13930 exception set 
    13931  
    13932 The above exception was the direct cause of the following exception: 
    13933  
    13934 Traceback (most recent call last): 
    13935 File
    13936 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13937 packages/chimerax/core/logger.py", line 334, in ehook 
    13938 self.session.ui.thread_safe( 
    13939 File
    13940 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13941 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13942 func(*args, **kw) 
    13943 File
    13944 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13945 packages/chimerax/core/logger.py", line 516, in report_exception 
    13946 self.bug(err_msg.replace("\n", "
    13947 "), is_html=True) 
    13948 File
    13949 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13950 packages/chimerax/core/logger.py", line 394, in bug 
    13951 self._log( 
    13952 File
    13953 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13954 packages/chimerax/core/logger.py", line 572, in _log 
    13955 if log.log(*args): 
    13956 ^^^^^^^^^^^^^^ 
    13957 File
    13958 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13959 packages/chimerax/log/tool.py", line 342, in log 
    13960 self.session.ui.thread_safe(f) 
    13961 File
    13962 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13963 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    13964 func(*args, **kw) 
    13965 File
    13966 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13967 packages/chimerax/log/tool.py", line 341, in   
    13968 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    13969 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13970 File
    13971 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13972 packages/chimerax/log/tool.py", line 262, in show_error_message 
    13973 ed.showMessage(msg) 
    13974 SystemError:  returned a result with an exception set 
    13975  
    13976 Original exception was: 
    13977 Traceback (most recent call last): 
    13978 File
    13979 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13980 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    13981 self.enterEvent() 
    13982 File
    13983 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13984 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    13985 self.segmentation_tool.make_puck_visible(self.axis) 
    13986 File
    13987 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13988 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    13989 make_puck_visible 
    13990 self.segmentation_cursors[axis].display = True 
    13991 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    13992 File
    13993 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13994 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    13995 super(Drawing, self).__setattr__(key, value) 
    13996 File
    13997 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    13998 packages/chimerax/core/models.py", line 345, in _set_display 
    13999 Drawing.set_display(self, display) 
    14000 File
    14001 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14002 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14003 dp = self.display_positions 
    14004 ^^^^^^^^^^^^^^^^^^^^^^ 
    14005 File
    14006 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14007 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14008 dp = ones((len(self._positions),), bool) 
    14009 ^^^^^^^^^^^^^^^^^^^^ 
    14010 TypeError: object of type 'NoneType' has no len() 
    14011 Traceback (most recent call last): 
    14012 File
    14013 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14014 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    14015 self.enterEvent() 
    14016 File
    14017 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14018 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    14019 self.segmentation_tool.make_puck_visible(self.axis) 
    14020 File
    14021 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14022 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    14023 make_puck_visible 
    14024 self.segmentation_cursors[axis].display = True 
    14025 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14026 File
    14027 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14028 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14029 super(Drawing, self).__setattr__(key, value) 
    14030 File
    14031 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14032 packages/chimerax/core/models.py", line 345, in _set_display 
    14033 Drawing.set_display(self, display) 
    14034 File
    14035 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14036 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14037 dp = self.display_positions 
    14038 ^^^^^^^^^^^^^^^^^^^^^^ 
    14039 File
    14040 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14041 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14042 dp = ones((len(self._positions),), bool) 
    14043 ^^^^^^^^^^^^^^^^^^^^ 
    14044 TypeError: object of type 'NoneType' has no len() 
    14045  
    14046 Error in sys.excepthook: 
    14047 Traceback (most recent call last): 
    14048 File
    14049 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14050 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    14051 self.leaveEvent() 
    14052 File
    14053 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14054 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    14055 self.segmentation_tool.make_puck_invisible(self.axis) 
    14056 File
    14057 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14058 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    14059 make_puck_invisible 
    14060 self.segmentation_cursors[axis].display = False 
    14061 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14062 File
    14063 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14064 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14065 super(Drawing, self).__setattr__(key, value) 
    14066 File
    14067 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14068 packages/chimerax/core/models.py", line 345, in _set_display 
    14069 Drawing.set_display(self, display) 
    14070 File
    14071 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14072 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14073 dp = self.display_positions 
    14074 ^^^^^^^^^^^^^^^^^^^^^^ 
    14075 File
    14076 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14077 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14078 dp = ones((len(self._positions),), bool) 
    14079 ^^^^^^^^^^^^^^^^^^^^ 
    14080 TypeError: object of type 'NoneType' has no len() 
    14081  
    14082 The above exception was the direct cause of the following exception: 
    14083  
    14084 SystemError:  returned a result with an exception
    14085 set 
    14086  
    14087 The above exception was the direct cause of the following exception: 
    14088  
    14089 SystemError:  returned a result with an exception
    14090 set 
    14091  
    14092 The above exception was the direct cause of the following exception: 
    14093  
    14094 SystemError:  returned a result with an exception
    14095 set 
    14096  
    14097 The above exception was the direct cause of the following exception: 
    14098  
    14099 SystemError:  returned a result with an exception
    14100 set 
    14101  
    14102 The above exception was the direct cause of the following exception: 
    14103  
    14104 SystemError:  returned a result with an exception
    14105 set 
    14106  
    14107 The above exception was the direct cause of the following exception: 
    14108  
    14109 SystemError:  returned a result with an exception
    14110 set 
    14111  
    14112 The above exception was the direct cause of the following exception: 
    14113  
    14114 SystemError:  returned a result with an
    14115 exception set 
    14116  
    14117 The above exception was the direct cause of the following exception: 
    14118  
    14119 SystemError:  returned a result with an
    14120 exception set 
    14121  
    14122 The above exception was the direct cause of the following exception: 
    14123  
    14124 SystemError:  returned a result with an
    14125 exception set 
    14126  
    14127 The above exception was the direct cause of the following exception: 
    14128  
    14129 SystemError:  returned a result with an
    14130 exception set 
    14131  
    14132 The above exception was the direct cause of the following exception: 
    14133  
    14134 SystemError:  returned a result with an
    14135 exception set 
    14136  
    14137 The above exception was the direct cause of the following exception: 
    14138  
    14139 SystemError:  returned a result with an
    14140 exception set 
    14141  
    14142 The above exception was the direct cause of the following exception: 
    14143  
    14144 Traceback (most recent call last): 
    14145 File
    14146 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14147 packages/chimerax/core/logger.py", line 334, in ehook 
    14148 self.session.ui.thread_safe( 
    14149 File
    14150 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14151 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    14152 func(*args, **kw) 
    14153 File
    14154 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14155 packages/chimerax/core/logger.py", line 516, in report_exception 
    14156 self.bug(err_msg.replace("\n", "
    14157 "), is_html=True) 
    14158 File
    14159 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14160 packages/chimerax/core/logger.py", line 394, in bug 
    14161 self._log( 
    14162 File
    14163 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14164 packages/chimerax/core/logger.py", line 572, in _log 
    14165 if log.log(*args): 
    14166 ^^^^^^^^^^^^^^ 
    14167 File
    14168 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14169 packages/chimerax/log/tool.py", line 342, in log 
    14170 self.session.ui.thread_safe(f) 
    14171 File
    14172 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14173 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    14174 func(*args, **kw) 
    14175 File
    14176 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14177 packages/chimerax/log/tool.py", line 341, in   
    14178 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    14179 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14180 File
    14181 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14182 packages/chimerax/log/tool.py", line 262, in show_error_message 
    14183 ed.showMessage(msg) 
    14184 SystemError:  returned a result with an exception set 
    14185  
    14186 Original exception was: 
    14187 Traceback (most recent call last): 
    14188 File
    14189 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14190 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    14191 self.enterEvent() 
    14192 File
    14193 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14194 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    14195 self.segmentation_tool.make_puck_visible(self.axis) 
    14196 File
    14197 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14198 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    14199 make_puck_visible 
    14200 self.segmentation_cursors[axis].display = True 
    14201 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14202 File
    14203 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14204 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14205 super(Drawing, self).__setattr__(key, value) 
    14206 File
    14207 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14208 packages/chimerax/core/models.py", line 345, in _set_display 
    14209 Drawing.set_display(self, display) 
    14210 File
    14211 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14212 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14213 dp = self.display_positions 
    14214 ^^^^^^^^^^^^^^^^^^^^^^ 
    14215 File
    14216 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14217 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14218 dp = ones((len(self._positions),), bool) 
    14219 ^^^^^^^^^^^^^^^^^^^^ 
    14220 TypeError: object of type 'NoneType' has no len() 
    14221 Traceback (most recent call last): 
    14222 File
    14223 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14224 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    14225 self.enterEvent() 
    14226 File
    14227 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14228 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    14229 self.segmentation_tool.make_puck_visible(self.axis) 
    14230 File
    14231 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14232 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    14233 make_puck_visible 
    14234 self.segmentation_cursors[axis].display = True 
    14235 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14236 File
    14237 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14238 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14239 super(Drawing, self).__setattr__(key, value) 
    14240 File
    14241 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14242 packages/chimerax/core/models.py", line 345, in _set_display 
    14243 Drawing.set_display(self, display) 
    14244 File
    14245 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14246 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14247 dp = self.display_positions 
    14248 ^^^^^^^^^^^^^^^^^^^^^^ 
    14249 File
    14250 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14251 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14252 dp = ones((len(self._positions),), bool) 
    14253 ^^^^^^^^^^^^^^^^^^^^ 
    14254 TypeError: object of type 'NoneType' has no len() 
    14255  
    14256 Error in sys.excepthook: 
    14257 Traceback (most recent call last): 
    14258 File
    14259 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14260 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    14261 self.leaveEvent() 
    14262 File
    14263 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14264 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    14265 self.segmentation_tool.make_puck_invisible(self.axis) 
    14266 File
    14267 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14268 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    14269 make_puck_invisible 
    14270 self.segmentation_cursors[axis].display = False 
    14271 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14272 File
    14273 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14274 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14275 super(Drawing, self).__setattr__(key, value) 
    14276 File
    14277 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14278 packages/chimerax/core/models.py", line 345, in _set_display 
    14279 Drawing.set_display(self, display) 
    14280 File
    14281 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14282 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14283 dp = self.display_positions 
    14284 ^^^^^^^^^^^^^^^^^^^^^^ 
    14285 File
    14286 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14287 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14288 dp = ones((len(self._positions),), bool) 
    14289 ^^^^^^^^^^^^^^^^^^^^ 
    14290 TypeError: object of type 'NoneType' has no len() 
    14291  
    14292 The above exception was the direct cause of the following exception: 
    14293  
    14294 SystemError:  returned a result with an exception
    14295 set 
    14296  
    14297 The above exception was the direct cause of the following exception: 
    14298  
    14299 SystemError:  returned a result with an exception
    14300 set 
    14301  
    14302 The above exception was the direct cause of the following exception: 
    14303  
    14304 SystemError:  returned a result with an exception
    14305 set 
    14306  
    14307 The above exception was the direct cause of the following exception: 
    14308  
    14309 SystemError:  returned a result with an exception
    14310 set 
    14311  
    14312 The above exception was the direct cause of the following exception: 
    14313  
    14314 SystemError:  returned a result with an exception
    14315 set 
    14316  
    14317 The above exception was the direct cause of the following exception: 
    14318  
    14319 SystemError:  returned a result with an exception
    14320 set 
    14321  
    14322 The above exception was the direct cause of the following exception: 
    14323  
    14324 SystemError:  returned a result with an
    14325 exception set 
    14326  
    14327 The above exception was the direct cause of the following exception: 
    14328  
    14329 SystemError:  returned a result with an
    14330 exception set 
    14331  
    14332 The above exception was the direct cause of the following exception: 
    14333  
    14334 SystemError:  returned a result with an
    14335 exception set 
    14336  
    14337 The above exception was the direct cause of the following exception: 
    14338  
    14339 SystemError:  returned a result with an
    14340 exception set 
    14341  
    14342 The above exception was the direct cause of the following exception: 
    14343  
    14344 SystemError:  returned a result with an
    14345 exception set 
    14346  
    14347 The above exception was the direct cause of the following exception: 
    14348  
    14349 SystemError:  returned a result with an
    14350 exception set 
    14351  
    14352 The above exception was the direct cause of the following exception: 
    14353  
    14354 Traceback (most recent call last): 
    14355 File
    14356 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14357 packages/chimerax/core/logger.py", line 334, in ehook 
    14358 self.session.ui.thread_safe( 
    14359 File
    14360 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14361 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    14362 func(*args, **kw) 
    14363 File
    14364 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14365 packages/chimerax/core/logger.py", line 516, in report_exception 
    14366 self.bug(err_msg.replace("\n", "
    14367 "), is_html=True) 
    14368 File
    14369 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14370 packages/chimerax/core/logger.py", line 394, in bug 
    14371 self._log( 
    14372 File
    14373 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14374 packages/chimerax/core/logger.py", line 572, in _log 
    14375 if log.log(*args): 
    14376 ^^^^^^^^^^^^^^ 
    14377 File
    14378 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14379 packages/chimerax/log/tool.py", line 342, in log 
    14380 self.session.ui.thread_safe(f) 
    14381 File
    14382 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14383 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    14384 func(*args, **kw) 
    14385 File
    14386 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14387 packages/chimerax/log/tool.py", line 341, in   
    14388 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    14389 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14390 File
    14391 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14392 packages/chimerax/log/tool.py", line 262, in show_error_message 
    14393 ed.showMessage(msg) 
    14394 SystemError:  returned a result with an exception set 
    14395  
    14396 Original exception was: 
    14397 Traceback (most recent call last): 
    14398 File
    14399 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14400 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    14401 self.enterEvent() 
    14402 File
    14403 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14404 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    14405 self.segmentation_tool.make_puck_visible(self.axis) 
    14406 File
    14407 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14408 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    14409 make_puck_visible 
    14410 self.segmentation_cursors[axis].display = True 
    14411 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14412 File
    14413 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14414 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14415 super(Drawing, self).__setattr__(key, value) 
    14416 File
    14417 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14418 packages/chimerax/core/models.py", line 345, in _set_display 
    14419 Drawing.set_display(self, display) 
    14420 File
    14421 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14422 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14423 dp = self.display_positions 
    14424 ^^^^^^^^^^^^^^^^^^^^^^ 
    14425 File
    14426 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14427 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14428 dp = ones((len(self._positions),), bool) 
    14429 ^^^^^^^^^^^^^^^^^^^^ 
    14430 TypeError: object of type 'NoneType' has no len() 
    14431 Traceback (most recent call last): 
    14432 File
    14433 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14434 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    14435 self.enterEvent() 
    14436 File
    14437 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14438 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    14439 self.segmentation_tool.make_puck_visible(self.axis) 
    14440 File
    14441 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14442 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    14443 make_puck_visible 
    14444 self.segmentation_cursors[axis].display = True 
    14445 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14446 File
    14447 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14448 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14449 super(Drawing, self).__setattr__(key, value) 
    14450 File
    14451 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14452 packages/chimerax/core/models.py", line 345, in _set_display 
    14453 Drawing.set_display(self, display) 
    14454 File
    14455 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14456 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14457 dp = self.display_positions 
    14458 ^^^^^^^^^^^^^^^^^^^^^^ 
    14459 File
    14460 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14461 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14462 dp = ones((len(self._positions),), bool) 
    14463 ^^^^^^^^^^^^^^^^^^^^ 
    14464 TypeError: object of type 'NoneType' has no len() 
    14465  
    14466 TypeError: object of type 'NoneType' has no len() 
    14467  
    14468 File
    14469 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14470 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14471 dp = ones((len(self._positions),), bool) 
    14472 ^^^^^^^^^^^^^^^^^^^^ 
    14473  
    14474 See log for complete Python traceback. 
    14475  
    14476 Traceback (most recent call last): 
    14477 File
    14478 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14479 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14480 mouseMoveEvent 
    14481 self.moveSegmentationPuck(x, y, record_seg=False) 
    14482 File
    14483 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14484 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14485 moveSegmentationPuck 
    14486 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14487 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14488 File
    14489 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14490 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14491 return self.position.origin() 
    14492 ^^^^^^^^^^^^^ 
    14493 File
    14494 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14495 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14496 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14497 self.name) 
    14498 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14499 segmentation cursor" 
    14500  
    14501 Error in sys.excepthook: 
    14502 Traceback (most recent call last): 
    14503 File
    14504 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14505 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    14506 self.leaveEvent() 
    14507 File
    14508 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14509 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    14510 self.segmentation_tool.make_puck_invisible(self.axis) 
    14511 File
    14512 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14513 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    14514 make_puck_invisible 
    14515 self.segmentation_cursors[axis].display = False 
    14516 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14517 File
    14518 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14519 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14520 super(Drawing, self).__setattr__(key, value) 
    14521 File
    14522 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14523 packages/chimerax/core/models.py", line 345, in _set_display 
    14524 Drawing.set_display(self, display) 
    14525 File
    14526 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14527 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14528 dp = self.display_positions 
    14529 ^^^^^^^^^^^^^^^^^^^^^^ 
    14530 File
    14531 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14532 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14533 dp = ones((len(self._positions),), bool) 
    14534 ^^^^^^^^^^^^^^^^^^^^ 
    14535 TypeError: object of type 'NoneType' has no len() 
    14536  
    14537 The above exception was the direct cause of the following exception: 
    14538  
    14539 SystemError:  returned a result with an exception
    14540 set 
    14541  
    14542 The above exception was the direct cause of the following exception: 
    14543  
    14544 SystemError:  returned a result with an exception
    14545 set 
    14546  
    14547 The above exception was the direct cause of the following exception: 
    14548  
    14549 SystemError:  returned a result with an exception
    14550 set 
    14551  
    14552 The above exception was the direct cause of the following exception: 
    14553  
    14554 SystemError:  returned a result with an exception
    14555 set 
    14556  
    14557 The above exception was the direct cause of the following exception: 
    14558  
    14559 SystemError:  returned a result with an exception
    14560 set 
    14561  
    14562 The above exception was the direct cause of the following exception: 
    14563  
    14564 SystemError:  returned a result with an exception
    14565 set 
    14566  
    14567 The above exception was the direct cause of the following exception: 
    14568  
    14569 SystemError:  returned a result with an
    14570 exception set 
    14571  
    14572 The above exception was the direct cause of the following exception: 
    14573  
    14574 SystemError:  returned a result with an
    14575 exception set 
    14576  
    14577 The above exception was the direct cause of the following exception: 
    14578  
    14579 SystemError:  returned a result with an
    14580 exception set 
    14581  
    14582 The above exception was the direct cause of the following exception: 
    14583  
    14584 SystemError:  returned a result with an
    14585 exception set 
    14586  
    14587 The above exception was the direct cause of the following exception: 
    14588  
    14589 SystemError:  returned a result with an
    14590 exception set 
    14591  
    14592 The above exception was the direct cause of the following exception: 
    14593  
    14594 SystemError:  returned a result with an
    14595 exception set 
    14596  
    14597 The above exception was the direct cause of the following exception: 
    14598  
    14599 Traceback (most recent call last): 
    14600 File
    14601 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14602 packages/chimerax/core/logger.py", line 334, in ehook 
    14603 self.session.ui.thread_safe( 
    14604 File
    14605 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14606 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    14607 func(*args, **kw) 
    14608 File
    14609 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14610 packages/chimerax/core/logger.py", line 516, in report_exception 
    14611 self.bug(err_msg.replace("\n", "
    14612 "), is_html=True) 
    14613 File
    14614 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14615 packages/chimerax/core/logger.py", line 394, in bug 
    14616 self._log( 
    14617 File
    14618 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14619 packages/chimerax/core/logger.py", line 572, in _log 
    14620 if log.log(*args): 
    14621 ^^^^^^^^^^^^^^ 
    14622 File
    14623 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14624 packages/chimerax/log/tool.py", line 342, in log 
    14625 self.session.ui.thread_safe(f) 
    14626 File
    14627 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14628 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    14629 func(*args, **kw) 
    14630 File
    14631 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14632 packages/chimerax/log/tool.py", line 341, in   
    14633 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    14634 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14635 File
    14636 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14637 packages/chimerax/log/tool.py", line 262, in show_error_message 
    14638 ed.showMessage(msg) 
    14639 SystemError:  returned a result with an exception set 
    14640  
    14641 Original exception was: 
    14642 Traceback (most recent call last): 
    14643 File
    14644 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14645 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14646 mouseMoveEvent 
    14647 self.moveSegmentationPuck(x, y, record_seg=False) 
    14648 File
    14649 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14650 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14651 moveSegmentationPuck 
    14652 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14653 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14654 File
    14655 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14656 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14657 return self.position.origin() 
    14658 ^^^^^^^^^^^^^ 
    14659 File
    14660 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14661 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14662 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14663 self.name) 
    14664 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14665 segmentation cursor" 
    14666 Traceback (most recent call last): 
    14667 File
    14668 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14669 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    14670 self.enterEvent() 
    14671 File
    14672 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14673 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    14674 self.segmentation_tool.make_puck_visible(self.axis) 
    14675 File
    14676 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14677 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    14678 make_puck_visible 
    14679 self.segmentation_cursors[axis].display = True 
    14680 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14681 File
    14682 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14683 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    14684 super(Drawing, self).__setattr__(key, value) 
    14685 File
    14686 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14687 packages/chimerax/core/models.py", line 345, in _set_display 
    14688 Drawing.set_display(self, display) 
    14689 File
    14690 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14691 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    14692 dp = self.display_positions 
    14693 ^^^^^^^^^^^^^^^^^^^^^^ 
    14694 File
    14695 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14696 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14697 dp = ones((len(self._positions),), bool) 
    14698 ^^^^^^^^^^^^^^^^^^^^ 
    14699 TypeError: object of type 'NoneType' has no len() 
    14700  
    14701 TypeError: object of type 'NoneType' has no len() 
    14702  
    14703 File
    14704 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14705 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    14706 dp = ones((len(self._positions),), bool) 
    14707 ^^^^^^^^^^^^^^^^^^^^ 
    14708  
    14709 See log for complete Python traceback. 
    14710  
    14711 Traceback (most recent call last): 
    14712 File
    14713 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14714 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14715 mouseMoveEvent 
    14716 self.moveSegmentationPuck(x, y, record_seg=False) 
    14717 File
    14718 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14719 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14720 moveSegmentationPuck 
    14721 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14722 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14723 File
    14724 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14725 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14726 return self.position.origin() 
    14727 ^^^^^^^^^^^^^ 
    14728 File
    14729 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14730 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14731 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14732 self.name) 
    14733 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14734 segmentation cursor" 
    14735  
    14736 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14737 segmentation cursor" 
    14738  
    14739 File
    14740 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14741 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14742 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14743 self.name) 
    14744  
    14745 See log for complete Python traceback. 
    14746  
    14747 Traceback (most recent call last): 
    14748 File
    14749 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14750 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14751 mouseMoveEvent 
    14752 self.moveSegmentationPuck(x, y, record_seg=False) 
    14753 File
    14754 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14755 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14756 moveSegmentationPuck 
    14757 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14758 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14759 File
    14760 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14761 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14762 return self.position.origin() 
    14763 ^^^^^^^^^^^^^ 
    14764 File
    14765 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14766 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14767 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14768 self.name) 
    14769 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14770 segmentation cursor" 
    14771  
    14772 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14773 segmentation cursor" 
    14774  
    14775 File
    14776 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14777 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14778 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14779 self.name) 
    14780  
    14781 See log for complete Python traceback. 
    14782  
    14783 Traceback (most recent call last): 
    14784 File
    14785 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14786 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14787 mouseMoveEvent 
    14788 self.moveSegmentationPuck(x, y, record_seg=False) 
    14789 File
    14790 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14791 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14792 moveSegmentationPuck 
    14793 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14794 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14795 File
    14796 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14797 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14798 return self.position.origin() 
    14799 ^^^^^^^^^^^^^ 
    14800 File
    14801 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14802 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14803 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14804 self.name) 
    14805 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14806 segmentation cursor" 
    14807  
    14808 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14809 segmentation cursor" 
    14810  
    14811 File
    14812 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14813 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14814 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14815 self.name) 
    14816  
    14817 See log for complete Python traceback. 
    14818  
    14819 Traceback (most recent call last): 
    14820 File
    14821 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14822 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14823 mouseMoveEvent 
    14824 self.moveSegmentationPuck(x, y, record_seg=False) 
    14825 File
    14826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14827 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14828 moveSegmentationPuck 
    14829 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14830 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14831 File
    14832 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14833 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14834 return self.position.origin() 
    14835 ^^^^^^^^^^^^^ 
    14836 File
    14837 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14838 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14839 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14840 self.name) 
    14841 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14842 segmentation cursor" 
    14843  
    14844 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14845 segmentation cursor" 
    14846  
    14847 File
    14848 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14849 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14850 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14851 self.name) 
    14852  
    14853 See log for complete Python traceback. 
    14854  
    14855 Traceback (most recent call last): 
    14856 File
    14857 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14858 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14859 mouseMoveEvent 
    14860 self.moveSegmentationPuck(x, y, record_seg=False) 
    14861 File
    14862 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14863 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14864 moveSegmentationPuck 
    14865 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14866 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14867 File
    14868 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14869 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14870 return self.position.origin() 
    14871 ^^^^^^^^^^^^^ 
    14872 File
    14873 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14874 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14875 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14876 self.name) 
    14877 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14878 segmentation cursor" 
    14879  
    14880 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14881 segmentation cursor" 
    14882  
    14883 File
    14884 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14885 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14886 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14887 self.name) 
    14888  
    14889 See log for complete Python traceback. 
    14890  
    14891 Traceback (most recent call last): 
    14892 File
    14893 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14894 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14895 mouseMoveEvent 
    14896 self.moveSegmentationPuck(x, y, record_seg=False) 
    14897 File
    14898 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14899 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14900 moveSegmentationPuck 
    14901 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14902 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14903 File
    14904 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14905 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14906 return self.position.origin() 
    14907 ^^^^^^^^^^^^^ 
    14908 File
    14909 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14910 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14911 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14912 self.name) 
    14913 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14914 segmentation cursor" 
    14915  
    14916 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14917 segmentation cursor" 
    14918  
    14919 File
    14920 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14921 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14922 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14923 self.name) 
    14924  
    14925 See log for complete Python traceback. 
    14926  
    14927 Traceback (most recent call last): 
    14928 File
    14929 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14930 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14931 mouseMoveEvent 
    14932 self.moveSegmentationPuck(x, y, record_seg=False) 
    14933 File
    14934 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14935 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14936 moveSegmentationPuck 
    14937 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14938 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14939 File
    14940 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14941 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14942 return self.position.origin() 
    14943 ^^^^^^^^^^^^^ 
    14944 File
    14945 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14946 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14947 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14948 self.name) 
    14949 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14950 segmentation cursor" 
    14951  
    14952 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14953 segmentation cursor" 
    14954  
    14955 File
    14956 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14957 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14958 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14959 self.name) 
    14960  
    14961 See log for complete Python traceback. 
    14962  
    14963 Traceback (most recent call last): 
    14964 File
    14965 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14966 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    14967 mouseMoveEvent 
    14968 self.moveSegmentationPuck(x, y, record_seg=False) 
    14969 File
    14970 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14971 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    14972 moveSegmentationPuck 
    14973 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    14974 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    14975 File
    14976 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14977 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    14978 return self.position.origin() 
    14979 ^^^^^^^^^^^^^ 
    14980 File
    14981 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14982 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14983 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14984 self.name) 
    14985 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14986 segmentation cursor" 
    14987  
    14988 RuntimeError: Tried to get the position of deleted drawing "sagittal
    14989 segmentation cursor" 
    14990  
    14991 File
    14992 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    14993 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    14994 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    14995 self.name) 
    14996  
    14997 See log for complete Python traceback. 
    14998  
    14999 Traceback (most recent call last): 
    15000 File
    15001 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15002 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    15003 self.leaveEvent() 
    15004 File
    15005 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15006 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    15007 self.segmentation_tool.make_puck_invisible(self.axis) 
    15008 File
    15009 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15010 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    15011 make_puck_invisible 
    15012 self.segmentation_cursors[axis].display = False 
    15013 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15014 File
    15015 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15016 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15017 super(Drawing, self).__setattr__(key, value) 
    15018 File
    15019 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15020 packages/chimerax/core/models.py", line 345, in _set_display 
    15021 Drawing.set_display(self, display) 
    15022 File
    15023 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15024 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15025 dp = self.display_positions 
    15026 ^^^^^^^^^^^^^^^^^^^^^^ 
    15027 File
    15028 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15029 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15030 dp = ones((len(self._positions),), bool) 
    15031 ^^^^^^^^^^^^^^^^^^^^ 
    15032 TypeError: object of type 'NoneType' has no len() 
    15033  
    15034 TypeError: object of type 'NoneType' has no len() 
    15035  
    15036 File
    15037 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15038 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15039 dp = ones((len(self._positions),), bool) 
    15040 ^^^^^^^^^^^^^^^^^^^^ 
    15041  
    15042 See log for complete Python traceback. 
    15043  
    15044 
    15045 > close #
    15046 
    15047 Expected a models specifier or a keyword 
    15048 
    15049 > close #
    15050 
    15051 Expected a models specifier or a keyword 
    15052 close # 
    15053 ......^ 
    15054 Expected a models specifier or a keyword 
    15055 Traceback (most recent call last): 
    15056 File
    15057 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15058 packages/chimerax/core/commands/logging.py", line 40, in
    15059 log_equivalent_command 
    15060 command.run(command_text, log_only=True) 
    15061 File
    15062 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15063 packages/chimerax/core/commands/cli.py", line 3175, in run 
    15064 raise UserError(self._error) 
    15065 chimerax.core.errors.UserError: Expected a models specifier or a keyword 
    15066  
    15067 During handling of the above exception, another exception occurred: 
    15068  
    15069 Traceback (most recent call last): 
    15070 File
    15071 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15072 packages/chimerax/map/volume_viewer.py", line 2138, in close_map_cb 
    15073 log_equivalent_command(v.session, 'close #%s' % v.id_string) 
    15074 File
    15075 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15076 packages/chimerax/core/commands/logging.py", line 42, in
    15077 log_equivalent_command 
    15078 session.logger.info(str(err)) 
    15079 ^^^^^^^^^^^^^^ 
    15080 AttributeError: 'NoneType' object has no attribute 'logger' 
    15081  
    15082 AttributeError: 'NoneType' object has no attribute 'logger' 
    15083  
    15084 File
    15085 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15086 packages/chimerax/core/commands/logging.py", line 42, in
    15087 log_equivalent_command 
    15088 session.logger.info(str(err)) 
    15089 ^^^^^^^^^^^^^^ 
    15090  
    15091 See log for complete Python traceback. 
    15092  
    15093 Traceback (most recent call last): 
    15094 File
    15095 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15096 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    15097 self.enterEvent() 
    15098 File
    15099 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15100 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    15101 self.segmentation_tool.make_puck_visible(self.axis) 
    15102 File
    15103 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15104 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    15105 make_puck_visible 
    15106 self.segmentation_cursors[axis].display = True 
    15107 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15108 File
    15109 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15110 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15111 super(Drawing, self).__setattr__(key, value) 
    15112 File
    15113 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15114 packages/chimerax/core/models.py", line 345, in _set_display 
    15115 Drawing.set_display(self, display) 
    15116 File
    15117 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15118 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15119 dp = self.display_positions 
    15120 ^^^^^^^^^^^^^^^^^^^^^^ 
    15121 File
    15122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15123 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15124 dp = ones((len(self._positions),), bool) 
    15125 ^^^^^^^^^^^^^^^^^^^^ 
    15126 TypeError: object of type 'NoneType' has no len() 
    15127  
    15128 TypeError: object of type 'NoneType' has no len() 
    15129  
    15130 File
    15131 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15132 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15133 dp = ones((len(self._positions),), bool) 
    15134 ^^^^^^^^^^^^^^^^^^^^ 
    15135  
    15136 See log for complete Python traceback. 
    15137  
    15138 Traceback (most recent call last): 
    15139 File
    15140 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15141 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15142 mouseMoveEvent 
    15143 self.moveSegmentationPuck(x, y, record_seg=False) 
    15144 File
    15145 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15146 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15147 moveSegmentationPuck 
    15148 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15149 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15150 File
    15151 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15152 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15153 return self.position.origin() 
    15154 ^^^^^^^^^^^^^ 
    15155 File
    15156 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15157 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15158 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15159 self.name) 
    15160 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15161 segmentation cursor" 
    15162  
    15163 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15164 segmentation cursor" 
    15165  
    15166 File
    15167 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15168 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15169 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15170 self.name) 
    15171  
    15172 See log for complete Python traceback. 
    15173  
    15174 Traceback (most recent call last): 
    15175 File
    15176 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15177 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15178 mouseMoveEvent 
    15179 self.moveSegmentationPuck(x, y, record_seg=False) 
    15180 File
    15181 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15182 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15183 moveSegmentationPuck 
    15184 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15185 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15186 File
    15187 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15188 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15189 return self.position.origin() 
    15190 ^^^^^^^^^^^^^ 
    15191 File
    15192 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15193 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15194 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15195 self.name) 
    15196 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15197 segmentation cursor" 
    15198  
    15199 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15200 segmentation cursor" 
    15201  
    15202 File
    15203 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15204 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15205 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15206 self.name) 
    15207  
    15208 See log for complete Python traceback. 
    15209  
    15210 Traceback (most recent call last): 
    15211 File
    15212 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15213 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15214 mouseMoveEvent 
    15215 self.moveSegmentationPuck(x, y, record_seg=False) 
    15216 File
    15217 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15218 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15219 moveSegmentationPuck 
    15220 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15221 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15222 File
    15223 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15224 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15225 return self.position.origin() 
    15226 ^^^^^^^^^^^^^ 
    15227 File
    15228 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15229 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15230 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15231 self.name) 
    15232 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15233 segmentation cursor" 
    15234  
    15235 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15236 segmentation cursor" 
    15237  
    15238 File
    15239 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15240 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15241 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15242 self.name) 
    15243  
    15244 See log for complete Python traceback. 
    15245  
    15246 Traceback (most recent call last): 
    15247 File
    15248 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15249 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15250 mouseMoveEvent 
    15251 self.moveSegmentationPuck(x, y, record_seg=False) 
    15252 File
    15253 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15254 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15255 moveSegmentationPuck 
    15256 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15257 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15258 File
    15259 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15260 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15261 return self.position.origin() 
    15262 ^^^^^^^^^^^^^ 
    15263 File
    15264 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15265 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15266 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15267 self.name) 
    15268 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15269 segmentation cursor" 
    15270  
    15271 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15272 segmentation cursor" 
    15273  
    15274 File
    15275 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15276 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15277 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15278 self.name) 
    15279  
    15280 See log for complete Python traceback. 
    15281  
    15282 Traceback (most recent call last): 
    15283 File
    15284 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15285 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15286 mouseMoveEvent 
    15287 self.moveSegmentationPuck(x, y, record_seg=False) 
    15288 File
    15289 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15290 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15291 moveSegmentationPuck 
    15292 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15293 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15294 File
    15295 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15296 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15297 return self.position.origin() 
    15298 ^^^^^^^^^^^^^ 
    15299 File
    15300 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15301 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15302 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15303 self.name) 
    15304 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15305 segmentation cursor" 
    15306  
    15307 RuntimeError: Tried to get the position of deleted drawing "sagittal
    15308 segmentation cursor" 
    15309  
    15310 File
    15311 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15312 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15313 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15314 self.name) 
    15315  
    15316 See log for complete Python traceback. 
    15317  
    15318 Traceback (most recent call last): 
    15319 File
    15320 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15321 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    15322 self.leaveEvent() 
    15323 File
    15324 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15325 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    15326 self.segmentation_tool.make_puck_invisible(self.axis) 
    15327 File
    15328 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15329 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    15330 make_puck_invisible 
    15331 self.segmentation_cursors[axis].display = False 
    15332 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15333 File
    15334 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15335 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15336 super(Drawing, self).__setattr__(key, value) 
    15337 File
    15338 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15339 packages/chimerax/core/models.py", line 345, in _set_display 
    15340 Drawing.set_display(self, display) 
    15341 File
    15342 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15343 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15344 dp = self.display_positions 
    15345 ^^^^^^^^^^^^^^^^^^^^^^ 
    15346 File
    15347 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15348 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15349 dp = ones((len(self._positions),), bool) 
    15350 ^^^^^^^^^^^^^^^^^^^^ 
    15351 TypeError: object of type 'NoneType' has no len() 
    15352  
    15353 TypeError: object of type 'NoneType' has no len() 
    15354  
    15355 File
    15356 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15357 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15358 dp = ones((len(self._positions),), bool) 
    15359 ^^^^^^^^^^^^^^^^^^^^ 
    15360  
    15361 See log for complete Python traceback. 
    15362  
    15363 Traceback (most recent call last): 
    15364 File
    15365 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15366 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    15367 self.enterEvent() 
    15368 File
    15369 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15370 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    15371 self.segmentation_tool.make_puck_visible(self.axis) 
    15372 File
    15373 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15374 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    15375 make_puck_visible 
    15376 self.segmentation_cursors[axis].display = True 
    15377 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15378 File
    15379 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15380 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15381 super(Drawing, self).__setattr__(key, value) 
    15382 File
    15383 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15384 packages/chimerax/core/models.py", line 345, in _set_display 
    15385 Drawing.set_display(self, display) 
    15386 File
    15387 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15388 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15389 dp = self.display_positions 
    15390 ^^^^^^^^^^^^^^^^^^^^^^ 
    15391 File
    15392 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15393 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15394 dp = ones((len(self._positions),), bool) 
    15395 ^^^^^^^^^^^^^^^^^^^^ 
    15396 TypeError: object of type 'NoneType' has no len() 
    15397  
    15398 TypeError: object of type 'NoneType' has no len() 
    15399  
    15400 File
    15401 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15402 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15403 dp = ones((len(self._positions),), bool) 
    15404 ^^^^^^^^^^^^^^^^^^^^ 
    15405  
    15406 See log for complete Python traceback. 
    15407  
    15408 Traceback (most recent call last): 
    15409 File
    15410 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15411 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15412 mouseMoveEvent 
    15413 self.moveSegmentationPuck(x, y, record_seg=False) 
    15414 File
    15415 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15416 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15417 moveSegmentationPuck 
    15418 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15419 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15420 File
    15421 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15422 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15423 return self.position.origin() 
    15424 ^^^^^^^^^^^^^ 
    15425 File
    15426 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15427 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15428 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15429 self.name) 
    15430 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15431 cursor" 
    15432  
    15433 Error in sys.excepthook: 
    15434 Traceback (most recent call last): 
    15435 File
    15436 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15437 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    15438 self.leaveEvent() 
    15439 File
    15440 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15441 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    15442 self.segmentation_tool.make_puck_invisible(self.axis) 
    15443 File
    15444 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15445 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    15446 make_puck_invisible 
    15447 self.segmentation_cursors[axis].display = False 
    15448 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15449 File
    15450 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15451 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15452 super(Drawing, self).__setattr__(key, value) 
    15453 File
    15454 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15455 packages/chimerax/core/models.py", line 345, in _set_display 
    15456 Drawing.set_display(self, display) 
    15457 File
    15458 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15459 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15460 dp = self.display_positions 
    15461 ^^^^^^^^^^^^^^^^^^^^^^ 
    15462 File
    15463 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15464 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15465 dp = ones((len(self._positions),), bool) 
    15466 ^^^^^^^^^^^^^^^^^^^^ 
    15467 TypeError: object of type 'NoneType' has no len() 
    15468  
    15469 The above exception was the direct cause of the following exception: 
    15470  
    15471 SystemError:  returned a result with an exception
    15472 set 
    15473  
    15474 The above exception was the direct cause of the following exception: 
    15475  
    15476 SystemError:  returned a result with an exception
    15477 set 
    15478  
    15479 The above exception was the direct cause of the following exception: 
    15480  
    15481 SystemError:  returned a result with an exception
    15482 set 
    15483  
    15484 The above exception was the direct cause of the following exception: 
    15485  
    15486 SystemError:  returned a result with an exception
    15487 set 
    15488  
    15489 The above exception was the direct cause of the following exception: 
    15490  
    15491 SystemError:  returned a result with an exception
    15492 set 
    15493  
    15494 The above exception was the direct cause of the following exception: 
    15495  
    15496 SystemError:  returned a result with an exception
    15497 set 
    15498  
    15499 The above exception was the direct cause of the following exception: 
    15500  
    15501 SystemError:  returned a result with an
    15502 exception set 
    15503  
    15504 The above exception was the direct cause of the following exception: 
    15505  
    15506 SystemError:  returned a result with an
    15507 exception set 
    15508  
    15509 The above exception was the direct cause of the following exception: 
    15510  
    15511 SystemError:  returned a result with an
    15512 exception set 
    15513  
    15514 The above exception was the direct cause of the following exception: 
    15515  
    15516 SystemError:  returned a result with an
    15517 exception set 
    15518  
    15519 The above exception was the direct cause of the following exception: 
    15520  
    15521 SystemError:  returned a result with an
    15522 exception set 
    15523  
    15524 The above exception was the direct cause of the following exception: 
    15525  
    15526 SystemError:  returned a result with an
    15527 exception set 
    15528  
    15529 The above exception was the direct cause of the following exception: 
    15530  
    15531 Traceback (most recent call last): 
    15532 File
    15533 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15534 packages/chimerax/core/logger.py", line 334, in ehook 
    15535 self.session.ui.thread_safe( 
    15536 File
    15537 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15538 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    15539 func(*args, **kw) 
    15540 File
    15541 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15542 packages/chimerax/core/logger.py", line 516, in report_exception 
    15543 self.bug(err_msg.replace("\n", "
    15544 "), is_html=True) 
    15545 File
    15546 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15547 packages/chimerax/core/logger.py", line 394, in bug 
    15548 self._log( 
    15549 File
    15550 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15551 packages/chimerax/core/logger.py", line 572, in _log 
    15552 if log.log(*args): 
    15553 ^^^^^^^^^^^^^^ 
    15554 File
    15555 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15556 packages/chimerax/log/tool.py", line 342, in log 
    15557 self.session.ui.thread_safe(f) 
    15558 File
    15559 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15560 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    15561 func(*args, **kw) 
    15562 File
    15563 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15564 packages/chimerax/log/tool.py", line 341, in   
    15565 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    15566 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15567 File
    15568 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15569 packages/chimerax/log/tool.py", line 262, in show_error_message 
    15570 ed.showMessage(msg) 
    15571 SystemError:  returned a result with an exception set 
    15572  
    15573 Original exception was: 
    15574 Traceback (most recent call last): 
    15575 File
    15576 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15577 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15578 mouseMoveEvent 
    15579 self.moveSegmentationPuck(x, y, record_seg=False) 
    15580 File
    15581 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15582 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15583 moveSegmentationPuck 
    15584 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15585 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15586 File
    15587 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15588 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15589 return self.position.origin() 
    15590 ^^^^^^^^^^^^^ 
    15591 File
    15592 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15593 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15594 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15595 self.name) 
    15596 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15597 cursor" 
    15598 Traceback (most recent call last): 
    15599 File
    15600 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15601 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    15602 self.enterEvent() 
    15603 File
    15604 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15605 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    15606 self.segmentation_tool.make_puck_visible(self.axis) 
    15607 File
    15608 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15609 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    15610 make_puck_visible 
    15611 self.segmentation_cursors[axis].display = True 
    15612 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15613 File
    15614 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15615 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15616 super(Drawing, self).__setattr__(key, value) 
    15617 File
    15618 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15619 packages/chimerax/core/models.py", line 345, in _set_display 
    15620 Drawing.set_display(self, display) 
    15621 File
    15622 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15623 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15624 dp = self.display_positions 
    15625 ^^^^^^^^^^^^^^^^^^^^^^ 
    15626 File
    15627 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15628 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15629 dp = ones((len(self._positions),), bool) 
    15630 ^^^^^^^^^^^^^^^^^^^^ 
    15631 TypeError: object of type 'NoneType' has no len() 
    15632  
    15633 TypeError: object of type 'NoneType' has no len() 
    15634  
    15635 File
    15636 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15637 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15638 dp = ones((len(self._positions),), bool) 
    15639 ^^^^^^^^^^^^^^^^^^^^ 
    15640  
    15641 See log for complete Python traceback. 
    15642  
    15643 Traceback (most recent call last): 
    15644 File
    15645 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15646 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    15647 self.leaveEvent() 
    15648 File
    15649 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15650 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    15651 self.segmentation_tool.make_puck_invisible(self.axis) 
    15652 File
    15653 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15654 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    15655 make_puck_invisible 
    15656 self.segmentation_cursors[axis].display = False 
    15657 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15658 File
    15659 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15660 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15661 super(Drawing, self).__setattr__(key, value) 
    15662 File
    15663 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15664 packages/chimerax/core/models.py", line 345, in _set_display 
    15665 Drawing.set_display(self, display) 
    15666 File
    15667 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15668 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15669 dp = self.display_positions 
    15670 ^^^^^^^^^^^^^^^^^^^^^^ 
    15671 File
    15672 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15673 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15674 dp = ones((len(self._positions),), bool) 
    15675 ^^^^^^^^^^^^^^^^^^^^ 
    15676 TypeError: object of type 'NoneType' has no len() 
    15677  
    15678 TypeError: object of type 'NoneType' has no len() 
    15679  
    15680 File
    15681 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15682 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15683 dp = ones((len(self._positions),), bool) 
    15684 ^^^^^^^^^^^^^^^^^^^^ 
    15685  
    15686 See log for complete Python traceback. 
    15687  
    15688 Traceback (most recent call last): 
    15689 File
    15690 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15691 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    15692 self.enterEvent() 
    15693 File
    15694 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15695 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    15696 self.segmentation_tool.make_puck_visible(self.axis) 
    15697 File
    15698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15699 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    15700 make_puck_visible 
    15701 self.segmentation_cursors[axis].display = True 
    15702 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15703 File
    15704 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15705 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    15706 super(Drawing, self).__setattr__(key, value) 
    15707 File
    15708 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15709 packages/chimerax/core/models.py", line 345, in _set_display 
    15710 Drawing.set_display(self, display) 
    15711 File
    15712 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15713 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    15714 dp = self.display_positions 
    15715 ^^^^^^^^^^^^^^^^^^^^^^ 
    15716 File
    15717 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15718 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15719 dp = ones((len(self._positions),), bool) 
    15720 ^^^^^^^^^^^^^^^^^^^^ 
    15721 TypeError: object of type 'NoneType' has no len() 
    15722  
    15723 TypeError: object of type 'NoneType' has no len() 
    15724  
    15725 File
    15726 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15727 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    15728 dp = ones((len(self._positions),), bool) 
    15729 ^^^^^^^^^^^^^^^^^^^^ 
    15730  
    15731 See log for complete Python traceback. 
    15732  
    15733 Traceback (most recent call last): 
    15734 File
    15735 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15736 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15737 mouseMoveEvent 
    15738 self.moveSegmentationPuck(x, y, record_seg=False) 
    15739 File
    15740 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15741 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15742 moveSegmentationPuck 
    15743 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15744 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15745 File
    15746 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15747 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15748 return self.position.origin() 
    15749 ^^^^^^^^^^^^^ 
    15750 File
    15751 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15752 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15753 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15754 self.name) 
    15755 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15756 cursor" 
    15757  
    15758 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15759 cursor" 
    15760  
    15761 File
    15762 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15763 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15764 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15765 self.name) 
    15766  
    15767 See log for complete Python traceback. 
    15768  
    15769 Traceback (most recent call last): 
    15770 File
    15771 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15772 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15773 mouseMoveEvent 
    15774 self.moveSegmentationPuck(x, y, record_seg=False) 
    15775 File
    15776 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15777 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15778 moveSegmentationPuck 
    15779 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15780 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15781 File
    15782 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15783 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15784 return self.position.origin() 
    15785 ^^^^^^^^^^^^^ 
    15786 File
    15787 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15788 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15789 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15790 self.name) 
    15791 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15792 cursor" 
    15793  
    15794 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15795 cursor" 
    15796  
    15797 File
    15798 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15799 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15800 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15801 self.name) 
    15802  
    15803 See log for complete Python traceback. 
    15804  
    15805 Traceback (most recent call last): 
    15806 File
    15807 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15808 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15809 mouseMoveEvent 
    15810 self.moveSegmentationPuck(x, y, record_seg=False) 
    15811 File
    15812 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15813 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15814 moveSegmentationPuck 
    15815 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15816 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15817 File
    15818 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15819 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15820 return self.position.origin() 
    15821 ^^^^^^^^^^^^^ 
    15822 File
    15823 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15824 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15825 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15826 self.name) 
    15827 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15828 cursor" 
    15829  
    15830 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15831 cursor" 
    15832  
    15833 File
    15834 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15835 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15836 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15837 self.name) 
    15838  
    15839 See log for complete Python traceback. 
    15840  
    15841 Traceback (most recent call last): 
    15842 File
    15843 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15844 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15845 mouseMoveEvent 
    15846 self.moveSegmentationPuck(x, y, record_seg=False) 
    15847 File
    15848 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15849 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15850 moveSegmentationPuck 
    15851 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15852 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15853 File
    15854 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15855 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15856 return self.position.origin() 
    15857 ^^^^^^^^^^^^^ 
    15858 File
    15859 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15860 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15861 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15862 self.name) 
    15863 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15864 cursor" 
    15865  
    15866 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15867 cursor" 
    15868  
    15869 File
    15870 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15871 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15872 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15873 self.name) 
    15874  
    15875 See log for complete Python traceback. 
    15876  
    15877 Traceback (most recent call last): 
    15878 File
    15879 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15880 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15881 mouseMoveEvent 
    15882 self.moveSegmentationPuck(x, y, record_seg=False) 
    15883 File
    15884 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15885 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15886 moveSegmentationPuck 
    15887 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15888 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15889 File
    15890 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15891 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15892 return self.position.origin() 
    15893 ^^^^^^^^^^^^^ 
    15894 File
    15895 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15896 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15897 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15898 self.name) 
    15899 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15900 cursor" 
    15901  
    15902 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15903 cursor" 
    15904  
    15905 File
    15906 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15907 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15908 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15909 self.name) 
    15910  
    15911 See log for complete Python traceback. 
    15912  
    15913 Traceback (most recent call last): 
    15914 File
    15915 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15916 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15917 mouseMoveEvent 
    15918 self.moveSegmentationPuck(x, y, record_seg=False) 
    15919 File
    15920 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15921 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15922 moveSegmentationPuck 
    15923 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15924 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15925 File
    15926 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15927 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15928 return self.position.origin() 
    15929 ^^^^^^^^^^^^^ 
    15930 File
    15931 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15932 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15933 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15934 self.name) 
    15935 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15936 cursor" 
    15937  
    15938 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15939 cursor" 
    15940  
    15941 File
    15942 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15943 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15944 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15945 self.name) 
    15946  
    15947 See log for complete Python traceback. 
    15948  
    15949 Traceback (most recent call last): 
    15950 File
    15951 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15952 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15953 mouseMoveEvent 
    15954 self.moveSegmentationPuck(x, y, record_seg=False) 
    15955 File
    15956 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15957 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15958 moveSegmentationPuck 
    15959 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15960 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15961 File
    15962 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15963 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    15964 return self.position.origin() 
    15965 ^^^^^^^^^^^^^ 
    15966 File
    15967 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15968 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15969 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15970 self.name) 
    15971 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15972 cursor" 
    15973  
    15974 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    15975 cursor" 
    15976  
    15977 File
    15978 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15979 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    15980 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    15981 self.name) 
    15982  
    15983 See log for complete Python traceback. 
    15984  
    15985 Traceback (most recent call last): 
    15986 File
    15987 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15988 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    15989 mouseMoveEvent 
    15990 self.moveSegmentationPuck(x, y, record_seg=False) 
    15991 File
    15992 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15993 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    15994 moveSegmentationPuck 
    15995 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    15996 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    15997 File
    15998 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    15999 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16000 return self.position.origin() 
    16001 ^^^^^^^^^^^^^ 
    16002 File
    16003 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16004 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16005 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16006 self.name) 
    16007 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16008 cursor" 
    16009  
    16010 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16011 cursor" 
    16012  
    16013 File
    16014 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16015 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16016 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16017 self.name) 
    16018  
    16019 See log for complete Python traceback. 
    16020  
    16021 Traceback (most recent call last): 
    16022 File
    16023 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16024 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16025 mouseMoveEvent 
    16026 self.moveSegmentationPuck(x, y, record_seg=False) 
    16027 File
    16028 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16029 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16030 moveSegmentationPuck 
    16031 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16032 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16033 File
    16034 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16035 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16036 return self.position.origin() 
    16037 ^^^^^^^^^^^^^ 
    16038 File
    16039 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16040 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16041 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16042 self.name) 
    16043 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16044 cursor" 
    16045  
    16046 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16047 cursor" 
    16048  
    16049 File
    16050 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16051 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16052 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16053 self.name) 
    16054  
    16055 See log for complete Python traceback. 
    16056  
    16057 Traceback (most recent call last): 
    16058 File
    16059 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16060 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16061 mouseMoveEvent 
    16062 self.moveSegmentationPuck(x, y, record_seg=False) 
    16063 File
    16064 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16065 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16066 moveSegmentationPuck 
    16067 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16068 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16069 File
    16070 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16071 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16072 return self.position.origin() 
    16073 ^^^^^^^^^^^^^ 
    16074 File
    16075 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16076 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16077 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16078 self.name) 
    16079 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16080 cursor" 
    16081  
    16082 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16083 cursor" 
    16084  
    16085 File
    16086 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16087 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16088 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16089 self.name) 
    16090  
    16091 See log for complete Python traceback. 
    16092  
    16093 Traceback (most recent call last): 
    16094 File
    16095 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16096 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16097 mouseMoveEvent 
    16098 self.moveSegmentationPuck(x, y, record_seg=False) 
    16099 File
    16100 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16101 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16102 moveSegmentationPuck 
    16103 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16104 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16105 File
    16106 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16107 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16108 return self.position.origin() 
    16109 ^^^^^^^^^^^^^ 
    16110 File
    16111 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16112 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16113 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16114 self.name) 
    16115 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16116 cursor" 
    16117  
    16118 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16119 cursor" 
    16120  
    16121 File
    16122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16123 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16124 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16125 self.name) 
    16126  
    16127 See log for complete Python traceback. 
    16128  
    16129 Traceback (most recent call last): 
    16130 File
    16131 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16132 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16133 mouseMoveEvent 
    16134 self.moveSegmentationPuck(x, y, record_seg=False) 
    16135 File
    16136 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16137 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16138 moveSegmentationPuck 
    16139 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16140 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16141 File
    16142 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16143 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16144 return self.position.origin() 
    16145 ^^^^^^^^^^^^^ 
    16146 File
    16147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16148 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16149 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16150 self.name) 
    16151 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16152 cursor" 
    16153  
    16154 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16155 cursor" 
    16156  
    16157 File
    16158 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16159 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16160 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16161 self.name) 
    16162  
    16163 See log for complete Python traceback. 
    16164  
    16165 Traceback (most recent call last): 
    16166 File
    16167 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16168 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16169 mouseMoveEvent 
    16170 self.moveSegmentationPuck(x, y, record_seg=False) 
    16171 File
    16172 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16173 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16174 moveSegmentationPuck 
    16175 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16176 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16177 File
    16178 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16179 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16180 return self.position.origin() 
    16181 ^^^^^^^^^^^^^ 
    16182 File
    16183 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16184 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16185 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16186 self.name) 
    16187 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16188 cursor" 
    16189  
    16190 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16191 cursor" 
    16192  
    16193 File
    16194 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16195 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16196 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16197 self.name) 
    16198  
    16199 See log for complete Python traceback. 
    16200  
    16201 Traceback (most recent call last): 
    16202 File
    16203 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16204 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16205 mouseMoveEvent 
    16206 self.moveSegmentationPuck(x, y, record_seg=False) 
    16207 File
    16208 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16209 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16210 moveSegmentationPuck 
    16211 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16212 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16213 File
    16214 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16215 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16216 return self.position.origin() 
    16217 ^^^^^^^^^^^^^ 
    16218 File
    16219 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16220 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16221 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16222 self.name) 
    16223 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16224 cursor" 
    16225  
    16226 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16227 cursor" 
    16228  
    16229 File
    16230 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16231 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16232 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16233 self.name) 
    16234  
    16235 See log for complete Python traceback. 
    16236  
    16237 Traceback (most recent call last): 
    16238 File
    16239 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16240 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16241 mouseMoveEvent 
    16242 self.moveSegmentationPuck(x, y, record_seg=False) 
    16243 File
    16244 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16245 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16246 moveSegmentationPuck 
    16247 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16248 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16249 File
    16250 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16251 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16252 return self.position.origin() 
    16253 ^^^^^^^^^^^^^ 
    16254 File
    16255 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16256 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16257 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16258 self.name) 
    16259 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16260 cursor" 
    16261  
    16262 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16263 cursor" 
    16264  
    16265 File
    16266 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16267 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16268 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16269 self.name) 
    16270  
    16271 See log for complete Python traceback. 
    16272  
    16273 Traceback (most recent call last): 
    16274 File
    16275 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16276 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16277 mouseMoveEvent 
    16278 self.moveSegmentationPuck(x, y, record_seg=False) 
    16279 File
    16280 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16281 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16282 moveSegmentationPuck 
    16283 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16284 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16285 File
    16286 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16287 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16288 return self.position.origin() 
    16289 ^^^^^^^^^^^^^ 
    16290 File
    16291 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16292 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16293 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16294 self.name) 
    16295 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16296 cursor" 
    16297  
    16298 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16299 cursor" 
    16300  
    16301 File
    16302 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16303 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16304 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16305 self.name) 
    16306  
    16307 See log for complete Python traceback. 
    16308  
    16309 Traceback (most recent call last): 
    16310 File
    16311 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16312 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16313 mouseMoveEvent 
    16314 self.moveSegmentationPuck(x, y, record_seg=False) 
    16315 File
    16316 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16317 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16318 moveSegmentationPuck 
    16319 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16320 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16321 File
    16322 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16323 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16324 return self.position.origin() 
    16325 ^^^^^^^^^^^^^ 
    16326 File
    16327 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16328 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16329 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16330 self.name) 
    16331 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16332 cursor" 
    16333  
    16334 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16335 cursor" 
    16336  
    16337 File
    16338 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16339 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16340 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16341 self.name) 
    16342  
    16343 See log for complete Python traceback. 
    16344  
    16345 Traceback (most recent call last): 
    16346 File
    16347 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16348 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16349 mouseMoveEvent 
    16350 self.moveSegmentationPuck(x, y, record_seg=False) 
    16351 File
    16352 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16353 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16354 moveSegmentationPuck 
    16355 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16356 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16357 File
    16358 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16359 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16360 return self.position.origin() 
    16361 ^^^^^^^^^^^^^ 
    16362 File
    16363 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16364 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16365 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16366 self.name) 
    16367 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16368 cursor" 
    16369  
    16370 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16371 cursor" 
    16372  
    16373 File
    16374 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16375 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16376 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16377 self.name) 
    16378  
    16379 See log for complete Python traceback. 
    16380  
    16381 Traceback (most recent call last): 
    16382 File
    16383 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16384 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16385 mouseMoveEvent 
    16386 self.moveSegmentationPuck(x, y, record_seg=False) 
    16387 File
    16388 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16389 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16390 moveSegmentationPuck 
    16391 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16392 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16393 File
    16394 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16395 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16396 return self.position.origin() 
    16397 ^^^^^^^^^^^^^ 
    16398 File
    16399 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16400 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16401 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16402 self.name) 
    16403 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16404 cursor" 
    16405  
    16406 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16407 cursor" 
    16408  
    16409 File
    16410 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16411 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16412 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16413 self.name) 
    16414  
    16415 See log for complete Python traceback. 
    16416  
    16417 Traceback (most recent call last): 
    16418 File
    16419 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16420 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16421 mouseMoveEvent 
    16422 self.moveSegmentationPuck(x, y, record_seg=False) 
    16423 File
    16424 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16425 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16426 moveSegmentationPuck 
    16427 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16428 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16429 File
    16430 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16431 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16432 return self.position.origin() 
    16433 ^^^^^^^^^^^^^ 
    16434 File
    16435 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16436 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16437 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16438 self.name) 
    16439 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16440 cursor" 
    16441  
    16442 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16443 cursor" 
    16444  
    16445 File
    16446 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16447 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16448 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16449 self.name) 
    16450  
    16451 See log for complete Python traceback. 
    16452  
    16453 Traceback (most recent call last): 
    16454 File
    16455 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16456 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16457 mouseMoveEvent 
    16458 self.moveSegmentationPuck(x, y, record_seg=False) 
    16459 File
    16460 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16461 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16462 moveSegmentationPuck 
    16463 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16464 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16465 File
    16466 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16467 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16468 return self.position.origin() 
    16469 ^^^^^^^^^^^^^ 
    16470 File
    16471 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16472 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16473 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16474 self.name) 
    16475 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16476 cursor" 
    16477  
    16478 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16479 cursor" 
    16480  
    16481 File
    16482 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16483 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16484 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16485 self.name) 
    16486  
    16487 See log for complete Python traceback. 
    16488  
    16489 Traceback (most recent call last): 
    16490 File
    16491 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16492 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16493 mouseMoveEvent 
    16494 self.moveSegmentationPuck(x, y, record_seg=False) 
    16495 File
    16496 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16497 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16498 moveSegmentationPuck 
    16499 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16500 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16501 File
    16502 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16503 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16504 return self.position.origin() 
    16505 ^^^^^^^^^^^^^ 
    16506 File
    16507 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16508 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16509 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16510 self.name) 
    16511 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16512 cursor" 
    16513  
    16514 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16515 cursor" 
    16516  
    16517 File
    16518 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16519 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16520 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16521 self.name) 
    16522  
    16523 See log for complete Python traceback. 
    16524  
    16525 Traceback (most recent call last): 
    16526 File
    16527 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16528 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16529 mouseMoveEvent 
    16530 self.moveSegmentationPuck(x, y, record_seg=False) 
    16531 File
    16532 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16533 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16534 moveSegmentationPuck 
    16535 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16536 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16537 File
    16538 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16539 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16540 return self.position.origin() 
    16541 ^^^^^^^^^^^^^ 
    16542 File
    16543 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16544 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16545 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16546 self.name) 
    16547 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16548 cursor" 
    16549  
    16550 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16551 cursor" 
    16552  
    16553 File
    16554 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16555 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16556 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16557 self.name) 
    16558  
    16559 See log for complete Python traceback. 
    16560  
    16561 Traceback (most recent call last): 
    16562 File
    16563 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16564 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16565 mouseMoveEvent 
    16566 self.moveSegmentationPuck(x, y, record_seg=False) 
    16567 File
    16568 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16569 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16570 moveSegmentationPuck 
    16571 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16572 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16573 File
    16574 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16575 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16576 return self.position.origin() 
    16577 ^^^^^^^^^^^^^ 
    16578 File
    16579 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16580 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16581 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16582 self.name) 
    16583 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16584 cursor" 
    16585  
    16586 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16587 cursor" 
    16588  
    16589 File
    16590 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16591 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16592 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16593 self.name) 
    16594  
    16595 See log for complete Python traceback. 
    16596  
    16597 Traceback (most recent call last): 
    16598 File
    16599 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16600 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16601 mouseMoveEvent 
    16602 self.moveSegmentationPuck(x, y, record_seg=False) 
    16603 File
    16604 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16605 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16606 moveSegmentationPuck 
    16607 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16608 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16609 File
    16610 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16611 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16612 return self.position.origin() 
    16613 ^^^^^^^^^^^^^ 
    16614 File
    16615 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16616 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16617 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16618 self.name) 
    16619 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16620 cursor" 
    16621  
    16622 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16623 cursor" 
    16624  
    16625 File
    16626 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16627 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16628 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16629 self.name) 
    16630  
    16631 See log for complete Python traceback. 
    16632  
    16633 Traceback (most recent call last): 
    16634 File
    16635 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16636 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16637 mouseMoveEvent 
    16638 self.moveSegmentationPuck(x, y, record_seg=False) 
    16639 File
    16640 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16641 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16642 moveSegmentationPuck 
    16643 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16644 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16645 File
    16646 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16647 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16648 return self.position.origin() 
    16649 ^^^^^^^^^^^^^ 
    16650 File
    16651 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16652 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16653 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16654 self.name) 
    16655 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16656 cursor" 
    16657  
    16658 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16659 cursor" 
    16660  
    16661 File
    16662 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16663 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16664 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16665 self.name) 
    16666  
    16667 See log for complete Python traceback. 
    16668  
    16669 Traceback (most recent call last): 
    16670 File
    16671 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16672 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16673 mouseMoveEvent 
    16674 self.moveSegmentationPuck(x, y, record_seg=False) 
    16675 File
    16676 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16677 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16678 moveSegmentationPuck 
    16679 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16680 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16681 File
    16682 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16683 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16684 return self.position.origin() 
    16685 ^^^^^^^^^^^^^ 
    16686 File
    16687 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16688 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16689 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16690 self.name) 
    16691 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16692 cursor" 
    16693  
    16694 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16695 cursor" 
    16696  
    16697 File
    16698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16699 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16700 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16701 self.name) 
    16702  
    16703 See log for complete Python traceback. 
    16704  
    16705 Traceback (most recent call last): 
    16706 File
    16707 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16708 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16709 mouseMoveEvent 
    16710 self.moveSegmentationPuck(x, y, record_seg=False) 
    16711 File
    16712 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16713 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16714 moveSegmentationPuck 
    16715 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16716 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16717 File
    16718 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16719 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16720 return self.position.origin() 
    16721 ^^^^^^^^^^^^^ 
    16722 File
    16723 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16724 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16725 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16726 self.name) 
    16727 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16728 cursor" 
    16729  
    16730 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16731 cursor" 
    16732  
    16733 File
    16734 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16735 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16736 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16737 self.name) 
    16738  
    16739 See log for complete Python traceback. 
    16740  
    16741 Traceback (most recent call last): 
    16742 File
    16743 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16744 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16745 mouseMoveEvent 
    16746 self.moveSegmentationPuck(x, y, record_seg=False) 
    16747 File
    16748 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16749 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16750 moveSegmentationPuck 
    16751 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16752 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16753 File
    16754 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16755 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16756 return self.position.origin() 
    16757 ^^^^^^^^^^^^^ 
    16758 File
    16759 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16760 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16761 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16762 self.name) 
    16763 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16764 cursor" 
    16765  
    16766 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16767 cursor" 
    16768  
    16769 File
    16770 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16771 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16772 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16773 self.name) 
    16774  
    16775 See log for complete Python traceback. 
    16776  
    16777 Traceback (most recent call last): 
    16778 File
    16779 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16780 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16781 mouseMoveEvent 
    16782 self.moveSegmentationPuck(x, y, record_seg=False) 
    16783 File
    16784 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16785 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16786 moveSegmentationPuck 
    16787 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16788 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16789 File
    16790 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16791 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16792 return self.position.origin() 
    16793 ^^^^^^^^^^^^^ 
    16794 File
    16795 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16796 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16797 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16798 self.name) 
    16799 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16800 cursor" 
    16801  
    16802 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16803 cursor" 
    16804  
    16805 File
    16806 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16807 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16808 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16809 self.name) 
    16810  
    16811 See log for complete Python traceback. 
    16812  
    16813 Traceback (most recent call last): 
    16814 File
    16815 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16816 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16817 mouseMoveEvent 
    16818 self.moveSegmentationPuck(x, y, record_seg=False) 
    16819 File
    16820 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16821 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16822 moveSegmentationPuck 
    16823 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16824 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16825 File
    16826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16827 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16828 return self.position.origin() 
    16829 ^^^^^^^^^^^^^ 
    16830 File
    16831 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16832 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16833 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16834 self.name) 
    16835 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16836 cursor" 
    16837  
    16838 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16839 cursor" 
    16840  
    16841 File
    16842 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16843 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16844 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16845 self.name) 
    16846  
    16847 See log for complete Python traceback. 
    16848  
    16849 Traceback (most recent call last): 
    16850 File
    16851 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16852 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16853 mouseMoveEvent 
    16854 self.moveSegmentationPuck(x, y, record_seg=False) 
    16855 File
    16856 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16857 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16858 moveSegmentationPuck 
    16859 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16860 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16861 File
    16862 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16863 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16864 return self.position.origin() 
    16865 ^^^^^^^^^^^^^ 
    16866 File
    16867 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16868 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16869 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16870 self.name) 
    16871 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16872 cursor" 
    16873  
    16874 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16875 cursor" 
    16876  
    16877 File
    16878 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16879 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16880 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16881 self.name) 
    16882  
    16883 See log for complete Python traceback. 
    16884  
    16885 Traceback (most recent call last): 
    16886 File
    16887 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16888 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16889 mouseMoveEvent 
    16890 self.moveSegmentationPuck(x, y, record_seg=False) 
    16891 File
    16892 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16893 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16894 moveSegmentationPuck 
    16895 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16896 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16897 File
    16898 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16899 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16900 return self.position.origin() 
    16901 ^^^^^^^^^^^^^ 
    16902 File
    16903 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16904 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16905 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16906 self.name) 
    16907 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16908 cursor" 
    16909  
    16910 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16911 cursor" 
    16912  
    16913 File
    16914 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16915 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16916 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16917 self.name) 
    16918  
    16919 See log for complete Python traceback. 
    16920  
    16921 Traceback (most recent call last): 
    16922 File
    16923 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16924 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16925 mouseMoveEvent 
    16926 self.moveSegmentationPuck(x, y, record_seg=False) 
    16927 File
    16928 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16929 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16930 moveSegmentationPuck 
    16931 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16932 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16933 File
    16934 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16935 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16936 return self.position.origin() 
    16937 ^^^^^^^^^^^^^ 
    16938 File
    16939 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16940 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16941 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16942 self.name) 
    16943 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16944 cursor" 
    16945  
    16946 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16947 cursor" 
    16948  
    16949 File
    16950 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16951 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16952 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16953 self.name) 
    16954  
    16955 See log for complete Python traceback. 
    16956  
    16957 Traceback (most recent call last): 
    16958 File
    16959 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16960 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16961 mouseMoveEvent 
    16962 self.moveSegmentationPuck(x, y, record_seg=False) 
    16963 File
    16964 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16965 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    16966 moveSegmentationPuck 
    16967 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    16968 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    16969 File
    16970 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16971 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    16972 return self.position.origin() 
    16973 ^^^^^^^^^^^^^ 
    16974 File
    16975 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16976 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16977 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16978 self.name) 
    16979 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16980 cursor" 
    16981  
    16982 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    16983 cursor" 
    16984  
    16985 File
    16986 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16987 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    16988 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    16989 self.name) 
    16990  
    16991 See log for complete Python traceback. 
    16992  
    16993 Traceback (most recent call last): 
    16994 File
    16995 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    16996 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    16997 mouseMoveEvent 
    16998 self.moveSegmentationPuck(x, y, record_seg=False) 
    16999 File
    17000 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17001 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17002 moveSegmentationPuck 
    17003 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17004 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17005 File
    17006 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17007 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17008 return self.position.origin() 
    17009 ^^^^^^^^^^^^^ 
    17010 File
    17011 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17012 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17013 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17014 self.name) 
    17015 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17016 cursor" 
    17017  
    17018 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17019 cursor" 
    17020  
    17021 File
    17022 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17023 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17024 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17025 self.name) 
    17026  
    17027 See log for complete Python traceback. 
    17028  
    17029 Traceback (most recent call last): 
    17030 File
    17031 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17032 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17033 mouseMoveEvent 
    17034 self.moveSegmentationPuck(x, y, record_seg=False) 
    17035 File
    17036 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17037 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17038 moveSegmentationPuck 
    17039 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17040 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17041 File
    17042 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17043 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17044 return self.position.origin() 
    17045 ^^^^^^^^^^^^^ 
    17046 File
    17047 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17048 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17049 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17050 self.name) 
    17051 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17052 cursor" 
    17053  
    17054 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17055 cursor" 
    17056  
    17057 File
    17058 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17059 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17060 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17061 self.name) 
    17062  
    17063 See log for complete Python traceback. 
    17064  
    17065 Traceback (most recent call last): 
    17066 File
    17067 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17068 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17069 mouseMoveEvent 
    17070 self.moveSegmentationPuck(x, y, record_seg=False) 
    17071 File
    17072 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17073 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17074 moveSegmentationPuck 
    17075 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17076 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17077 File
    17078 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17079 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17080 return self.position.origin() 
    17081 ^^^^^^^^^^^^^ 
    17082 File
    17083 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17084 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17085 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17086 self.name) 
    17087 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17088 cursor" 
    17089  
    17090 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17091 cursor" 
    17092  
    17093 File
    17094 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17095 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17096 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17097 self.name) 
    17098  
    17099 See log for complete Python traceback. 
    17100  
    17101 Traceback (most recent call last): 
    17102 File
    17103 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17104 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17105 mouseMoveEvent 
    17106 self.moveSegmentationPuck(x, y, record_seg=False) 
    17107 File
    17108 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17109 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17110 moveSegmentationPuck 
    17111 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17112 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17113 File
    17114 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17115 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17116 return self.position.origin() 
    17117 ^^^^^^^^^^^^^ 
    17118 File
    17119 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17120 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17121 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17122 self.name) 
    17123 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17124 cursor" 
    17125  
    17126 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17127 cursor" 
    17128  
    17129 File
    17130 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17131 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17132 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17133 self.name) 
    17134  
    17135 See log for complete Python traceback. 
    17136  
    17137 Traceback (most recent call last): 
    17138 File
    17139 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17140 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17141 mouseMoveEvent 
    17142 self.moveSegmentationPuck(x, y, record_seg=False) 
    17143 File
    17144 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17145 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17146 moveSegmentationPuck 
    17147 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17148 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17149 File
    17150 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17151 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17152 return self.position.origin() 
    17153 ^^^^^^^^^^^^^ 
    17154 File
    17155 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17156 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17157 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17158 self.name) 
    17159 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17160 cursor" 
    17161  
    17162 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17163 cursor" 
    17164  
    17165 File
    17166 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17167 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17168 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17169 self.name) 
    17170  
    17171 See log for complete Python traceback. 
    17172  
    17173 Traceback (most recent call last): 
    17174 File
    17175 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17176 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17177 mouseMoveEvent 
    17178 self.moveSegmentationPuck(x, y, record_seg=False) 
    17179 File
    17180 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17181 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17182 moveSegmentationPuck 
    17183 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17184 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17185 File
    17186 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17187 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17188 return self.position.origin() 
    17189 ^^^^^^^^^^^^^ 
    17190 File
    17191 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17192 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17193 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17194 self.name) 
    17195 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17196 cursor" 
    17197  
    17198 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17199 cursor" 
    17200  
    17201 File
    17202 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17203 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17204 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17205 self.name) 
    17206  
    17207 See log for complete Python traceback. 
    17208  
    17209 Traceback (most recent call last): 
    17210 File
    17211 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17212 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17213 mouseMoveEvent 
    17214 self.moveSegmentationPuck(x, y, record_seg=False) 
    17215 File
    17216 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17217 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17218 moveSegmentationPuck 
    17219 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17221 File
    17222 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17223 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17224 return self.position.origin() 
    17225 ^^^^^^^^^^^^^ 
    17226 File
    17227 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17228 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17229 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17230 self.name) 
    17231 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17232 cursor" 
    17233  
    17234 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17235 cursor" 
    17236  
    17237 File
    17238 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17239 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17240 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17241 self.name) 
    17242  
    17243 See log for complete Python traceback. 
    17244  
    17245 Traceback (most recent call last): 
    17246 File
    17247 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17248 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17249 mouseMoveEvent 
    17250 self.moveSegmentationPuck(x, y, record_seg=False) 
    17251 File
    17252 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17253 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17254 moveSegmentationPuck 
    17255 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17256 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17257 File
    17258 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17259 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17260 return self.position.origin() 
    17261 ^^^^^^^^^^^^^ 
    17262 File
    17263 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17264 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17265 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17266 self.name) 
    17267 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17268 cursor" 
    17269  
    17270 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17271 cursor" 
    17272  
    17273 File
    17274 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17275 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17276 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17277 self.name) 
    17278  
    17279 See log for complete Python traceback. 
    17280  
    17281 Traceback (most recent call last): 
    17282 File
    17283 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17284 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17285 mouseMoveEvent 
    17286 self.moveSegmentationPuck(x, y, record_seg=False) 
    17287 File
    17288 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17289 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17290 moveSegmentationPuck 
    17291 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17292 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17293 File
    17294 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17295 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17296 return self.position.origin() 
    17297 ^^^^^^^^^^^^^ 
    17298 File
    17299 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17300 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17301 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17302 self.name) 
    17303 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17304 cursor" 
    17305  
    17306 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17307 cursor" 
    17308  
    17309 File
    17310 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17311 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17312 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17313 self.name) 
    17314  
    17315 See log for complete Python traceback. 
    17316  
    17317 Traceback (most recent call last): 
    17318 File
    17319 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17320 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17321 mouseMoveEvent 
    17322 self.moveSegmentationPuck(x, y, record_seg=False) 
    17323 File
    17324 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17325 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17326 moveSegmentationPuck 
    17327 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17328 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17329 File
    17330 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17331 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17332 return self.position.origin() 
    17333 ^^^^^^^^^^^^^ 
    17334 File
    17335 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17336 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17337 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17338 self.name) 
    17339 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17340 cursor" 
    17341  
    17342 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17343 cursor" 
    17344  
    17345 File
    17346 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17347 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17348 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17349 self.name) 
    17350  
    17351 See log for complete Python traceback. 
    17352  
    17353 Traceback (most recent call last): 
    17354 File
    17355 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17356 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17357 mouseMoveEvent 
    17358 self.moveSegmentationPuck(x, y, record_seg=False) 
    17359 File
    17360 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17361 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17362 moveSegmentationPuck 
    17363 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17364 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17365 File
    17366 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17367 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17368 return self.position.origin() 
    17369 ^^^^^^^^^^^^^ 
    17370 File
    17371 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17372 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17373 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17374 self.name) 
    17375 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17376 cursor" 
    17377  
    17378 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17379 cursor" 
    17380  
    17381 File
    17382 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17383 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17384 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17385 self.name) 
    17386  
    17387 See log for complete Python traceback. 
    17388  
    17389 Traceback (most recent call last): 
    17390 File
    17391 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17392 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17393 mouseMoveEvent 
    17394 self.moveSegmentationPuck(x, y, record_seg=False) 
    17395 File
    17396 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17397 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17398 moveSegmentationPuck 
    17399 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17400 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17401 File
    17402 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17403 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17404 return self.position.origin() 
    17405 ^^^^^^^^^^^^^ 
    17406 File
    17407 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17408 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17409 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17410 self.name) 
    17411 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17412 cursor" 
    17413  
    17414 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17415 cursor" 
    17416  
    17417 File
    17418 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17419 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17420 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17421 self.name) 
    17422  
    17423 See log for complete Python traceback. 
    17424  
    17425 Traceback (most recent call last): 
    17426 File
    17427 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17428 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17429 mouseMoveEvent 
    17430 self.moveSegmentationPuck(x, y, record_seg=False) 
    17431 File
    17432 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17433 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17434 moveSegmentationPuck 
    17435 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17436 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17437 File
    17438 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17439 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17440 return self.position.origin() 
    17441 ^^^^^^^^^^^^^ 
    17442 File
    17443 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17444 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17445 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17446 self.name) 
    17447 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17448 cursor" 
    17449  
    17450 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17451 cursor" 
    17452  
    17453 File
    17454 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17455 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17456 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17457 self.name) 
    17458  
    17459 See log for complete Python traceback. 
    17460  
    17461 Traceback (most recent call last): 
    17462 File
    17463 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17464 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17465 mouseMoveEvent 
    17466 self.moveSegmentationPuck(x, y, record_seg=False) 
    17467 File
    17468 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17469 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17470 moveSegmentationPuck 
    17471 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17472 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17473 File
    17474 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17475 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17476 return self.position.origin() 
    17477 ^^^^^^^^^^^^^ 
    17478 File
    17479 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17480 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17481 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17482 self.name) 
    17483 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17484 cursor" 
    17485  
    17486 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17487 cursor" 
    17488  
    17489 File
    17490 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17491 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17492 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17493 self.name) 
    17494  
    17495 See log for complete Python traceback. 
    17496  
    17497 Traceback (most recent call last): 
    17498 File
    17499 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17500 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17501 mouseMoveEvent 
    17502 self.moveSegmentationPuck(x, y, record_seg=False) 
    17503 File
    17504 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17505 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17506 moveSegmentationPuck 
    17507 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17508 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17509 File
    17510 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17511 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17512 return self.position.origin() 
    17513 ^^^^^^^^^^^^^ 
    17514 File
    17515 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17516 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17517 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17518 self.name) 
    17519 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17520 cursor" 
    17521  
    17522 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17523 cursor" 
    17524  
    17525 File
    17526 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17527 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17528 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17529 self.name) 
    17530  
    17531 See log for complete Python traceback. 
    17532  
    17533 Traceback (most recent call last): 
    17534 File
    17535 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17536 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17537 mouseMoveEvent 
    17538 self.moveSegmentationPuck(x, y, record_seg=False) 
    17539 File
    17540 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17541 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17542 moveSegmentationPuck 
    17543 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17544 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17545 File
    17546 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17547 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17548 return self.position.origin() 
    17549 ^^^^^^^^^^^^^ 
    17550 File
    17551 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17552 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17553 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17554 self.name) 
    17555 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17556 cursor" 
    17557  
    17558 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17559 cursor" 
    17560  
    17561 File
    17562 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17563 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17564 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17565 self.name) 
    17566  
    17567 See log for complete Python traceback. 
    17568  
    17569 Traceback (most recent call last): 
    17570 File
    17571 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17572 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17573 mouseMoveEvent 
    17574 self.moveSegmentationPuck(x, y, record_seg=False) 
    17575 File
    17576 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17577 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17578 moveSegmentationPuck 
    17579 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17580 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17581 File
    17582 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17583 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17584 return self.position.origin() 
    17585 ^^^^^^^^^^^^^ 
    17586 File
    17587 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17588 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17589 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17590 self.name) 
    17591 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17592 cursor" 
    17593  
    17594 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17595 cursor" 
    17596  
    17597 File
    17598 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17599 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17600 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17601 self.name) 
    17602  
    17603 See log for complete Python traceback. 
    17604  
    17605 Traceback (most recent call last): 
    17606 File
    17607 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17608 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17609 mouseMoveEvent 
    17610 self.moveSegmentationPuck(x, y, record_seg=False) 
    17611 File
    17612 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17613 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17614 moveSegmentationPuck 
    17615 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17616 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17617 File
    17618 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17619 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17620 return self.position.origin() 
    17621 ^^^^^^^^^^^^^ 
    17622 File
    17623 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17624 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17625 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17626 self.name) 
    17627 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17628 cursor" 
    17629  
    17630 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17631 cursor" 
    17632  
    17633 File
    17634 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17635 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17636 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17637 self.name) 
    17638  
    17639 See log for complete Python traceback. 
    17640  
    17641 Traceback (most recent call last): 
    17642 File
    17643 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17644 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17645 mouseMoveEvent 
    17646 self.moveSegmentationPuck(x, y, record_seg=False) 
    17647 File
    17648 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17649 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17650 moveSegmentationPuck 
    17651 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17652 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17653 File
    17654 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17655 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17656 return self.position.origin() 
    17657 ^^^^^^^^^^^^^ 
    17658 File
    17659 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17660 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17661 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17662 self.name) 
    17663 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17664 cursor" 
    17665  
    17666 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17667 cursor" 
    17668  
    17669 File
    17670 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17671 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17672 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17673 self.name) 
    17674  
    17675 See log for complete Python traceback. 
    17676  
    17677 Traceback (most recent call last): 
    17678 File
    17679 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17680 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17681 mouseMoveEvent 
    17682 self.moveSegmentationPuck(x, y, record_seg=False) 
    17683 File
    17684 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17685 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17686 moveSegmentationPuck 
    17687 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17688 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17689 File
    17690 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17691 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17692 return self.position.origin() 
    17693 ^^^^^^^^^^^^^ 
    17694 File
    17695 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17696 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17697 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17698 self.name) 
    17699 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17700 cursor" 
    17701  
    17702 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17703 cursor" 
    17704  
    17705 File
    17706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17707 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17708 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17709 self.name) 
    17710  
    17711 See log for complete Python traceback. 
    17712  
    17713 Traceback (most recent call last): 
    17714 File
    17715 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17716 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17717 mouseMoveEvent 
    17718 self.moveSegmentationPuck(x, y, record_seg=False) 
    17719 File
    17720 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17721 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17722 moveSegmentationPuck 
    17723 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17724 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17725 File
    17726 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17727 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17728 return self.position.origin() 
    17729 ^^^^^^^^^^^^^ 
    17730 File
    17731 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17732 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17733 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17734 self.name) 
    17735 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17736 cursor" 
    17737  
    17738 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17739 cursor" 
    17740  
    17741 File
    17742 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17743 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17744 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17745 self.name) 
    17746  
    17747 See log for complete Python traceback. 
    17748  
    17749 Traceback (most recent call last): 
    17750 File
    17751 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17752 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17753 mouseMoveEvent 
    17754 self.moveSegmentationPuck(x, y, record_seg=False) 
    17755 File
    17756 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17757 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17758 moveSegmentationPuck 
    17759 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17760 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17761 File
    17762 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17763 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17764 return self.position.origin() 
    17765 ^^^^^^^^^^^^^ 
    17766 File
    17767 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17768 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17769 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17770 self.name) 
    17771 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17772 cursor" 
    17773  
    17774 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17775 cursor" 
    17776  
    17777 File
    17778 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17779 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17780 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17781 self.name) 
    17782  
    17783 See log for complete Python traceback. 
    17784  
    17785 Traceback (most recent call last): 
    17786 File
    17787 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17788 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17789 mouseMoveEvent 
    17790 self.moveSegmentationPuck(x, y, record_seg=False) 
    17791 File
    17792 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17793 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17794 moveSegmentationPuck 
    17795 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17796 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17797 File
    17798 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17799 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17800 return self.position.origin() 
    17801 ^^^^^^^^^^^^^ 
    17802 File
    17803 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17804 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17805 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17806 self.name) 
    17807 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17808 cursor" 
    17809  
    17810 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17811 cursor" 
    17812  
    17813 File
    17814 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17815 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17816 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17817 self.name) 
    17818  
    17819 See log for complete Python traceback. 
    17820  
    17821 Traceback (most recent call last): 
    17822 File
    17823 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17824 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17825 mouseMoveEvent 
    17826 self.moveSegmentationPuck(x, y, record_seg=False) 
    17827 File
    17828 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17829 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17830 moveSegmentationPuck 
    17831 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17832 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17833 File
    17834 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17835 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17836 return self.position.origin() 
    17837 ^^^^^^^^^^^^^ 
    17838 File
    17839 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17840 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17841 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17842 self.name) 
    17843 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17844 cursor" 
    17845  
    17846 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17847 cursor" 
    17848  
    17849 File
    17850 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17851 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17852 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17853 self.name) 
    17854  
    17855 See log for complete Python traceback. 
    17856  
    17857 Traceback (most recent call last): 
    17858 File
    17859 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17860 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17861 mouseMoveEvent 
    17862 self.moveSegmentationPuck(x, y, record_seg=False) 
    17863 File
    17864 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17865 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17866 moveSegmentationPuck 
    17867 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17868 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17869 File
    17870 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17871 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17872 return self.position.origin() 
    17873 ^^^^^^^^^^^^^ 
    17874 File
    17875 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17876 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17877 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17878 self.name) 
    17879 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17880 cursor" 
    17881  
    17882 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17883 cursor" 
    17884  
    17885 File
    17886 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17887 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17888 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17889 self.name) 
    17890  
    17891 See log for complete Python traceback. 
    17892  
    17893 Traceback (most recent call last): 
    17894 File
    17895 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17896 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17897 mouseMoveEvent 
    17898 self.moveSegmentationPuck(x, y, record_seg=False) 
    17899 File
    17900 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17901 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17902 moveSegmentationPuck 
    17903 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17904 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17905 File
    17906 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17907 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17908 return self.position.origin() 
    17909 ^^^^^^^^^^^^^ 
    17910 File
    17911 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17912 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17913 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17914 self.name) 
    17915 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17916 cursor" 
    17917  
    17918 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17919 cursor" 
    17920  
    17921 File
    17922 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17923 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17924 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17925 self.name) 
    17926  
    17927 See log for complete Python traceback. 
    17928  
    17929 Traceback (most recent call last): 
    17930 File
    17931 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17932 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17933 mouseMoveEvent 
    17934 self.moveSegmentationPuck(x, y, record_seg=False) 
    17935 File
    17936 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17937 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17938 moveSegmentationPuck 
    17939 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17940 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17941 File
    17942 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17943 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17944 return self.position.origin() 
    17945 ^^^^^^^^^^^^^ 
    17946 File
    17947 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17948 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17949 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17950 self.name) 
    17951 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17952 cursor" 
    17953  
    17954 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17955 cursor" 
    17956  
    17957 File
    17958 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17959 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17960 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17961 self.name) 
    17962  
    17963 See log for complete Python traceback. 
    17964  
    17965 Traceback (most recent call last): 
    17966 File
    17967 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17968 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    17969 mouseMoveEvent 
    17970 self.moveSegmentationPuck(x, y, record_seg=False) 
    17971 File
    17972 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17973 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    17974 moveSegmentationPuck 
    17975 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    17976 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    17977 File
    17978 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17979 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    17980 return self.position.origin() 
    17981 ^^^^^^^^^^^^^ 
    17982 File
    17983 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17984 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17985 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17986 self.name) 
    17987 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17988 cursor" 
    17989  
    17990 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    17991 cursor" 
    17992  
    17993 File
    17994 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    17995 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    17996 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    17997 self.name) 
    17998  
    17999 See log for complete Python traceback. 
    18000  
    18001 Traceback (most recent call last): 
    18002 File
    18003 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18004 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18005 mouseMoveEvent 
    18006 self.moveSegmentationPuck(x, y, record_seg=False) 
    18007 File
    18008 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18009 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18010 moveSegmentationPuck 
    18011 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18012 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18013 File
    18014 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18015 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18016 return self.position.origin() 
    18017 ^^^^^^^^^^^^^ 
    18018 File
    18019 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18020 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18021 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18022 self.name) 
    18023 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18024 cursor" 
    18025  
    18026 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18027 cursor" 
    18028  
    18029 File
    18030 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18031 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18032 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18033 self.name) 
    18034  
    18035 See log for complete Python traceback. 
    18036  
    18037 Traceback (most recent call last): 
    18038 File
    18039 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18040 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18041 mouseMoveEvent 
    18042 self.moveSegmentationPuck(x, y, record_seg=False) 
    18043 File
    18044 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18045 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18046 moveSegmentationPuck 
    18047 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18048 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18049 File
    18050 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18051 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18052 return self.position.origin() 
    18053 ^^^^^^^^^^^^^ 
    18054 File
    18055 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18056 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18057 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18058 self.name) 
    18059 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18060 cursor" 
    18061  
    18062 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18063 cursor" 
    18064  
    18065 File
    18066 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18067 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18068 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18069 self.name) 
    18070  
    18071 See log for complete Python traceback. 
    18072  
    18073 Traceback (most recent call last): 
    18074 File
    18075 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18076 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18077 mouseMoveEvent 
    18078 self.moveSegmentationPuck(x, y, record_seg=False) 
    18079 File
    18080 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18081 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18082 moveSegmentationPuck 
    18083 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18084 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18085 File
    18086 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18087 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18088 return self.position.origin() 
    18089 ^^^^^^^^^^^^^ 
    18090 File
    18091 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18092 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18093 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18094 self.name) 
    18095 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18096 cursor" 
    18097  
    18098 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18099 cursor" 
    18100  
    18101 File
    18102 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18103 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18104 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18105 self.name) 
    18106  
    18107 See log for complete Python traceback. 
    18108  
    18109 Traceback (most recent call last): 
    18110 File
    18111 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18112 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18113 mouseMoveEvent 
    18114 self.moveSegmentationPuck(x, y, record_seg=False) 
    18115 File
    18116 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18117 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18118 moveSegmentationPuck 
    18119 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18120 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18121 File
    18122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18123 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18124 return self.position.origin() 
    18125 ^^^^^^^^^^^^^ 
    18126 File
    18127 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18128 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18129 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18130 self.name) 
    18131 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18132 cursor" 
    18133  
    18134 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18135 cursor" 
    18136  
    18137 File
    18138 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18139 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18140 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18141 self.name) 
    18142  
    18143 See log for complete Python traceback. 
    18144  
    18145 Traceback (most recent call last): 
    18146 File
    18147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18148 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18149 mouseMoveEvent 
    18150 self.moveSegmentationPuck(x, y, record_seg=False) 
    18151 File
    18152 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18153 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18154 moveSegmentationPuck 
    18155 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18156 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18157 File
    18158 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18159 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18160 return self.position.origin() 
    18161 ^^^^^^^^^^^^^ 
    18162 File
    18163 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18164 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18165 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18166 self.name) 
    18167 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18168 cursor" 
    18169  
    18170 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18171 cursor" 
    18172  
    18173 File
    18174 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18175 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18176 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18177 self.name) 
    18178  
    18179 See log for complete Python traceback. 
    18180  
    18181 Traceback (most recent call last): 
    18182 File
    18183 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18184 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18185 mouseMoveEvent 
    18186 self.moveSegmentationPuck(x, y, record_seg=False) 
    18187 File
    18188 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18189 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18190 moveSegmentationPuck 
    18191 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18192 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18193 File
    18194 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18195 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18196 return self.position.origin() 
    18197 ^^^^^^^^^^^^^ 
    18198 File
    18199 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18200 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18201 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18202 self.name) 
    18203 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18204 cursor" 
    18205  
    18206 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18207 cursor" 
    18208  
    18209 File
    18210 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18211 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18212 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18213 self.name) 
    18214  
    18215 See log for complete Python traceback. 
    18216  
    18217 Traceback (most recent call last): 
    18218 File
    18219 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18220 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18221 mouseMoveEvent 
    18222 self.moveSegmentationPuck(x, y, record_seg=False) 
    18223 File
    18224 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18225 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18226 moveSegmentationPuck 
    18227 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18228 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18229 File
    18230 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18231 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18232 return self.position.origin() 
    18233 ^^^^^^^^^^^^^ 
    18234 File
    18235 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18236 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18237 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18238 self.name) 
    18239 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18240 cursor" 
    18241  
    18242 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18243 cursor" 
    18244  
    18245 File
    18246 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18247 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18248 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18249 self.name) 
    18250  
    18251 See log for complete Python traceback. 
    18252  
    18253 Traceback (most recent call last): 
    18254 File
    18255 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18256 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18257 mouseMoveEvent 
    18258 self.moveSegmentationPuck(x, y, record_seg=False) 
    18259 File
    18260 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18261 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18262 moveSegmentationPuck 
    18263 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18264 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18265 File
    18266 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18267 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18268 return self.position.origin() 
    18269 ^^^^^^^^^^^^^ 
    18270 File
    18271 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18272 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18273 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18274 self.name) 
    18275 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18276 cursor" 
    18277  
    18278 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18279 cursor" 
    18280  
    18281 File
    18282 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18283 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18284 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18285 self.name) 
    18286  
    18287 See log for complete Python traceback. 
    18288  
    18289 Traceback (most recent call last): 
    18290 File
    18291 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18292 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18293 mouseMoveEvent 
    18294 self.moveSegmentationPuck(x, y, record_seg=False) 
    18295 File
    18296 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18297 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18298 moveSegmentationPuck 
    18299 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18300 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18301 File
    18302 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18303 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18304 return self.position.origin() 
    18305 ^^^^^^^^^^^^^ 
    18306 File
    18307 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18308 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18309 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18310 self.name) 
    18311 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18312 cursor" 
    18313  
    18314 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18315 cursor" 
    18316  
    18317 File
    18318 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18319 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18320 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18321 self.name) 
    18322  
    18323 See log for complete Python traceback. 
    18324  
    18325 Traceback (most recent call last): 
    18326 File
    18327 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18328 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18329 mouseMoveEvent 
    18330 self.moveSegmentationPuck(x, y, record_seg=False) 
    18331 File
    18332 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18333 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18334 moveSegmentationPuck 
    18335 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18336 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18337 File
    18338 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18339 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18340 return self.position.origin() 
    18341 ^^^^^^^^^^^^^ 
    18342 File
    18343 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18344 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18345 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18346 self.name) 
    18347 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18348 cursor" 
    18349  
    18350 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18351 cursor" 
    18352  
    18353 File
    18354 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18355 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18356 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18357 self.name) 
    18358  
    18359 See log for complete Python traceback. 
    18360  
    18361 Traceback (most recent call last): 
    18362 File
    18363 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18364 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18365 mouseMoveEvent 
    18366 self.moveSegmentationPuck(x, y, record_seg=False) 
    18367 File
    18368 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18369 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18370 moveSegmentationPuck 
    18371 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18372 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18373 File
    18374 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18375 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18376 return self.position.origin() 
    18377 ^^^^^^^^^^^^^ 
    18378 File
    18379 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18380 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18381 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18382 self.name) 
    18383 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18384 cursor" 
    18385  
    18386 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18387 cursor" 
    18388  
    18389 File
    18390 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18391 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18392 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18393 self.name) 
    18394  
    18395 See log for complete Python traceback. 
    18396  
    18397 Traceback (most recent call last): 
    18398 File
    18399 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18400 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18401 mouseMoveEvent 
    18402 self.moveSegmentationPuck(x, y, record_seg=False) 
    18403 File
    18404 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18405 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18406 moveSegmentationPuck 
    18407 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18408 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18409 File
    18410 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18411 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18412 return self.position.origin() 
    18413 ^^^^^^^^^^^^^ 
    18414 File
    18415 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18416 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18417 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18418 self.name) 
    18419 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18420 cursor" 
    18421  
    18422 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18423 cursor" 
    18424  
    18425 File
    18426 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18427 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18428 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18429 self.name) 
    18430  
    18431 See log for complete Python traceback. 
    18432  
    18433 Traceback (most recent call last): 
    18434 File
    18435 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18436 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18437 mouseMoveEvent 
    18438 self.moveSegmentationPuck(x, y, record_seg=False) 
    18439 File
    18440 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18441 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18442 moveSegmentationPuck 
    18443 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18444 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18445 File
    18446 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18447 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18448 return self.position.origin() 
    18449 ^^^^^^^^^^^^^ 
    18450 File
    18451 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18452 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18453 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18454 self.name) 
    18455 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18456 cursor" 
    18457  
    18458 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18459 cursor" 
    18460  
    18461 File
    18462 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18463 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18464 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18465 self.name) 
    18466  
    18467 See log for complete Python traceback. 
    18468  
    18469 Traceback (most recent call last): 
    18470 File
    18471 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18472 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18473 mouseMoveEvent 
    18474 self.moveSegmentationPuck(x, y, record_seg=False) 
    18475 File
    18476 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18477 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18478 moveSegmentationPuck 
    18479 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18480 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18481 File
    18482 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18483 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18484 return self.position.origin() 
    18485 ^^^^^^^^^^^^^ 
    18486 File
    18487 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18488 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18489 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18490 self.name) 
    18491 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18492 cursor" 
    18493  
    18494 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18495 cursor" 
    18496  
    18497 File
    18498 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18499 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18500 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18501 self.name) 
    18502  
    18503 See log for complete Python traceback. 
    18504  
    18505 Traceback (most recent call last): 
    18506 File
    18507 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18508 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18509 mouseMoveEvent 
    18510 self.moveSegmentationPuck(x, y, record_seg=False) 
    18511 File
    18512 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18513 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18514 moveSegmentationPuck 
    18515 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18516 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18517 File
    18518 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18519 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18520 return self.position.origin() 
    18521 ^^^^^^^^^^^^^ 
    18522 File
    18523 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18524 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18525 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18526 self.name) 
    18527 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18528 cursor" 
    18529  
    18530 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18531 cursor" 
    18532  
    18533 File
    18534 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18535 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18536 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18537 self.name) 
    18538  
    18539 See log for complete Python traceback. 
    18540  
    18541 Traceback (most recent call last): 
    18542 File
    18543 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18544 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18545 mouseMoveEvent 
    18546 self.moveSegmentationPuck(x, y, record_seg=False) 
    18547 File
    18548 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18549 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18550 moveSegmentationPuck 
    18551 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18552 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18553 File
    18554 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18555 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18556 return self.position.origin() 
    18557 ^^^^^^^^^^^^^ 
    18558 File
    18559 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18560 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18561 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18562 self.name) 
    18563 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18564 cursor" 
    18565  
    18566 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18567 cursor" 
    18568  
    18569 File
    18570 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18571 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18572 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18573 self.name) 
    18574  
    18575 See log for complete Python traceback. 
    18576  
    18577 Traceback (most recent call last): 
    18578 File
    18579 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18580 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18581 mouseMoveEvent 
    18582 self.moveSegmentationPuck(x, y, record_seg=False) 
    18583 File
    18584 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18585 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18586 moveSegmentationPuck 
    18587 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18588 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18589 File
    18590 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18591 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18592 return self.position.origin() 
    18593 ^^^^^^^^^^^^^ 
    18594 File
    18595 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18596 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18597 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18598 self.name) 
    18599 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18600 cursor" 
    18601  
    18602 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18603 cursor" 
    18604  
    18605 File
    18606 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18607 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18608 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18609 self.name) 
    18610  
    18611 See log for complete Python traceback. 
    18612  
    18613 Traceback (most recent call last): 
    18614 File
    18615 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18616 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18617 mouseMoveEvent 
    18618 self.moveSegmentationPuck(x, y, record_seg=False) 
    18619 File
    18620 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18621 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18622 moveSegmentationPuck 
    18623 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18624 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18625 File
    18626 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18627 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18628 return self.position.origin() 
    18629 ^^^^^^^^^^^^^ 
    18630 File
    18631 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18632 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18633 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18634 self.name) 
    18635 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18636 cursor" 
    18637  
    18638 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18639 cursor" 
    18640  
    18641 File
    18642 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18643 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18644 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18645 self.name) 
    18646  
    18647 See log for complete Python traceback. 
    18648  
    18649 Traceback (most recent call last): 
    18650 File
    18651 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18652 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18653 mouseMoveEvent 
    18654 self.moveSegmentationPuck(x, y, record_seg=False) 
    18655 File
    18656 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18657 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18658 moveSegmentationPuck 
    18659 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18660 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18661 File
    18662 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18663 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18664 return self.position.origin() 
    18665 ^^^^^^^^^^^^^ 
    18666 File
    18667 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18668 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18669 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18670 self.name) 
    18671 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18672 cursor" 
    18673  
    18674 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18675 cursor" 
    18676  
    18677 File
    18678 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18679 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18680 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18681 self.name) 
    18682  
    18683 See log for complete Python traceback. 
    18684  
    18685 Traceback (most recent call last): 
    18686 File
    18687 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18688 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18689 mouseMoveEvent 
    18690 self.moveSegmentationPuck(x, y, record_seg=False) 
    18691 File
    18692 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18693 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18694 moveSegmentationPuck 
    18695 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18696 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18697 File
    18698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18699 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18700 return self.position.origin() 
    18701 ^^^^^^^^^^^^^ 
    18702 File
    18703 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18704 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18705 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18706 self.name) 
    18707 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18708 cursor" 
    18709  
    18710 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18711 cursor" 
    18712  
    18713 File
    18714 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18715 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18716 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18717 self.name) 
    18718  
    18719 See log for complete Python traceback. 
    18720  
    18721 Traceback (most recent call last): 
    18722 File
    18723 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18724 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18725 mouseMoveEvent 
    18726 self.moveSegmentationPuck(x, y, record_seg=False) 
    18727 File
    18728 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18729 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18730 moveSegmentationPuck 
    18731 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18732 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18733 File
    18734 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18735 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18736 return self.position.origin() 
    18737 ^^^^^^^^^^^^^ 
    18738 File
    18739 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18740 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18741 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18742 self.name) 
    18743 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18744 cursor" 
    18745  
    18746 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    18747 cursor" 
    18748  
    18749 File
    18750 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18751 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18752 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18753 self.name) 
    18754  
    18755 See log for complete Python traceback. 
    18756  
    18757 Traceback (most recent call last): 
    18758 File
    18759 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18760 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    18761 self.leaveEvent() 
    18762 File
    18763 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18764 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    18765 self.segmentation_tool.make_puck_invisible(self.axis) 
    18766 File
    18767 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18768 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    18769 make_puck_invisible 
    18770 self.segmentation_cursors[axis].display = False 
    18771 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18772 File
    18773 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18774 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    18775 super(Drawing, self).__setattr__(key, value) 
    18776 File
    18777 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18778 packages/chimerax/core/models.py", line 345, in _set_display 
    18779 Drawing.set_display(self, display) 
    18780 File
    18781 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18782 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    18783 dp = self.display_positions 
    18784 ^^^^^^^^^^^^^^^^^^^^^^ 
    18785 File
    18786 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18787 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    18788 dp = ones((len(self._positions),), bool) 
    18789 ^^^^^^^^^^^^^^^^^^^^ 
    18790 TypeError: object of type 'NoneType' has no len() 
    18791  
    18792 TypeError: object of type 'NoneType' has no len() 
    18793  
    18794 File
    18795 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18796 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    18797 dp = ones((len(self._positions),), bool) 
    18798 ^^^^^^^^^^^^^^^^^^^^ 
    18799  
    18800 See log for complete Python traceback. 
    18801  
    18802 Traceback (most recent call last): 
    18803 File
    18804 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18805 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    18806 self.enterEvent() 
    18807 File
    18808 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18809 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    18810 self.segmentation_tool.make_puck_visible(self.axis) 
    18811 File
    18812 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18813 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    18814 make_puck_visible 
    18815 self.segmentation_cursors[axis].display = True 
    18816 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18817 File
    18818 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18819 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    18820 super(Drawing, self).__setattr__(key, value) 
    18821 File
    18822 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18823 packages/chimerax/core/models.py", line 345, in _set_display 
    18824 Drawing.set_display(self, display) 
    18825 File
    18826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18827 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    18828 dp = self.display_positions 
    18829 ^^^^^^^^^^^^^^^^^^^^^^ 
    18830 File
    18831 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18832 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    18833 dp = ones((len(self._positions),), bool) 
    18834 ^^^^^^^^^^^^^^^^^^^^ 
    18835 TypeError: object of type 'NoneType' has no len() 
    18836  
    18837 TypeError: object of type 'NoneType' has no len() 
    18838  
    18839 File
    18840 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18841 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    18842 dp = ones((len(self._positions),), bool) 
    18843 ^^^^^^^^^^^^^^^^^^^^ 
    18844  
    18845 See log for complete Python traceback. 
    18846  
    18847 Traceback (most recent call last): 
    18848 File
    18849 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18850 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18851 mouseMoveEvent 
    18852 self.moveSegmentationPuck(x, y, record_seg=False) 
    18853 File
    18854 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18855 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18856 moveSegmentationPuck 
    18857 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18858 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18859 File
    18860 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18861 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18862 return self.position.origin() 
    18863 ^^^^^^^^^^^^^ 
    18864 File
    18865 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18866 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18867 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18868 self.name) 
    18869 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18870 segmentation cursor" 
    18871  
    18872 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18873 segmentation cursor" 
    18874  
    18875 File
    18876 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18877 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18878 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18879 self.name) 
    18880  
    18881 See log for complete Python traceback. 
    18882  
    18883 Traceback (most recent call last): 
    18884 File
    18885 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18886 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18887 mouseMoveEvent 
    18888 self.moveSegmentationPuck(x, y, record_seg=False) 
    18889 File
    18890 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18891 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18892 moveSegmentationPuck 
    18893 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18894 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18895 File
    18896 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18897 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18898 return self.position.origin() 
    18899 ^^^^^^^^^^^^^ 
    18900 File
    18901 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18902 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18903 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18904 self.name) 
    18905 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18906 segmentation cursor" 
    18907  
    18908 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18909 segmentation cursor" 
    18910  
    18911 File
    18912 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18913 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18914 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18915 self.name) 
    18916  
    18917 See log for complete Python traceback. 
    18918  
    18919 Traceback (most recent call last): 
    18920 File
    18921 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18922 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18923 mouseMoveEvent 
    18924 self.moveSegmentationPuck(x, y, record_seg=False) 
    18925 File
    18926 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18927 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18928 moveSegmentationPuck 
    18929 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18930 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18931 File
    18932 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18933 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18934 return self.position.origin() 
    18935 ^^^^^^^^^^^^^ 
    18936 File
    18937 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18938 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18939 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18940 self.name) 
    18941 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18942 segmentation cursor" 
    18943  
    18944 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18945 segmentation cursor" 
    18946  
    18947 File
    18948 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18949 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18950 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18951 self.name) 
    18952  
    18953 See log for complete Python traceback. 
    18954  
    18955 Traceback (most recent call last): 
    18956 File
    18957 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18958 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18959 mouseMoveEvent 
    18960 self.moveSegmentationPuck(x, y, record_seg=False) 
    18961 File
    18962 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18963 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    18964 moveSegmentationPuck 
    18965 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    18966 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    18967 File
    18968 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18969 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    18970 return self.position.origin() 
    18971 ^^^^^^^^^^^^^ 
    18972 File
    18973 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18974 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18975 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18976 self.name) 
    18977 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18978 segmentation cursor" 
    18979  
    18980 RuntimeError: Tried to get the position of deleted drawing "sagittal
    18981 segmentation cursor" 
    18982  
    18983 File
    18984 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18985 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    18986 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    18987 self.name) 
    18988  
    18989 See log for complete Python traceback. 
    18990  
    18991 Traceback (most recent call last): 
    18992 File
    18993 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18994 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    18995 mouseMoveEvent 
    18996 self.moveSegmentationPuck(x, y, record_seg=False) 
    18997 File
    18998 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    18999 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19000 moveSegmentationPuck 
    19001 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19002 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19003 File
    19004 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19005 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19006 return self.position.origin() 
    19007 ^^^^^^^^^^^^^ 
    19008 File
    19009 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19010 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19011 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19012 self.name) 
    19013 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19014 segmentation cursor" 
    19015  
    19016 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19017 segmentation cursor" 
    19018  
    19019 File
    19020 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19021 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19022 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19023 self.name) 
    19024  
    19025 See log for complete Python traceback. 
    19026  
    19027 Traceback (most recent call last): 
    19028 File
    19029 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19030 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19031 mouseMoveEvent 
    19032 self.moveSegmentationPuck(x, y, record_seg=False) 
    19033 File
    19034 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19035 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19036 moveSegmentationPuck 
    19037 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19038 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19039 File
    19040 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19041 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19042 return self.position.origin() 
    19043 ^^^^^^^^^^^^^ 
    19044 File
    19045 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19046 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19047 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19048 self.name) 
    19049 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19050 segmentation cursor" 
    19051  
    19052 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19053 segmentation cursor" 
    19054  
    19055 File
    19056 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19057 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19058 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19059 self.name) 
    19060  
    19061 See log for complete Python traceback. 
    19062  
    19063 Traceback (most recent call last): 
    19064 File
    19065 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19066 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19067 mouseMoveEvent 
    19068 self.moveSegmentationPuck(x, y, record_seg=False) 
    19069 File
    19070 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19071 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19072 moveSegmentationPuck 
    19073 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19074 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19075 File
    19076 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19077 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19078 return self.position.origin() 
    19079 ^^^^^^^^^^^^^ 
    19080 File
    19081 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19082 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19083 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19084 self.name) 
    19085 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19086 segmentation cursor" 
    19087  
    19088 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19089 segmentation cursor" 
    19090  
    19091 File
    19092 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19093 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19094 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19095 self.name) 
    19096  
    19097 See log for complete Python traceback. 
    19098  
    19099 Traceback (most recent call last): 
    19100 File
    19101 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19102 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19103 mouseMoveEvent 
    19104 self.moveSegmentationPuck(x, y, record_seg=False) 
    19105 File
    19106 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19107 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19108 moveSegmentationPuck 
    19109 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19110 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19111 File
    19112 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19113 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19114 return self.position.origin() 
    19115 ^^^^^^^^^^^^^ 
    19116 File
    19117 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19118 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19119 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19120 self.name) 
    19121 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19122 segmentation cursor" 
    19123  
    19124 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19125 segmentation cursor" 
    19126  
    19127 File
    19128 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19129 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19130 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19131 self.name) 
    19132  
    19133 See log for complete Python traceback. 
    19134  
    19135 Traceback (most recent call last): 
    19136 File
    19137 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19138 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19139 mouseMoveEvent 
    19140 self.moveSegmentationPuck(x, y, record_seg=False) 
    19141 File
    19142 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19143 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19144 moveSegmentationPuck 
    19145 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19146 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19147 File
    19148 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19149 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19150 return self.position.origin() 
    19151 ^^^^^^^^^^^^^ 
    19152 File
    19153 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19154 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19155 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19156 self.name) 
    19157 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19158 segmentation cursor" 
    19159  
    19160 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19161 segmentation cursor" 
    19162  
    19163 File
    19164 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19165 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19166 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19167 self.name) 
    19168  
    19169 See log for complete Python traceback. 
    19170  
    19171 Traceback (most recent call last): 
    19172 File
    19173 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19174 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19175 mouseMoveEvent 
    19176 self.moveSegmentationPuck(x, y, record_seg=False) 
    19177 File
    19178 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19179 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19180 moveSegmentationPuck 
    19181 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19182 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19183 File
    19184 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19185 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19186 return self.position.origin() 
    19187 ^^^^^^^^^^^^^ 
    19188 File
    19189 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19190 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19191 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19192 self.name) 
    19193 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19194 segmentation cursor" 
    19195  
    19196 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19197 segmentation cursor" 
    19198  
    19199 File
    19200 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19201 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19202 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19203 self.name) 
    19204  
    19205 See log for complete Python traceback. 
    19206  
    19207 Traceback (most recent call last): 
    19208 File
    19209 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19210 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19211 mouseMoveEvent 
    19212 self.moveSegmentationPuck(x, y, record_seg=False) 
    19213 File
    19214 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19215 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19216 moveSegmentationPuck 
    19217 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19218 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19219 File
    19220 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19221 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19222 return self.position.origin() 
    19223 ^^^^^^^^^^^^^ 
    19224 File
    19225 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19226 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19227 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19228 self.name) 
    19229 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19230 segmentation cursor" 
    19231  
    19232 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19233 segmentation cursor" 
    19234  
    19235 File
    19236 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19237 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19238 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19239 self.name) 
    19240  
    19241 See log for complete Python traceback. 
    19242  
    19243 Traceback (most recent call last): 
    19244 File
    19245 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19246 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19247 mouseMoveEvent 
    19248 self.moveSegmentationPuck(x, y, record_seg=False) 
    19249 File
    19250 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19251 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19252 moveSegmentationPuck 
    19253 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19254 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19255 File
    19256 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19257 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19258 return self.position.origin() 
    19259 ^^^^^^^^^^^^^ 
    19260 File
    19261 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19262 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19263 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19264 self.name) 
    19265 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19266 segmentation cursor" 
    19267  
    19268 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19269 segmentation cursor" 
    19270  
    19271 File
    19272 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19273 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19274 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19275 self.name) 
    19276  
    19277 See log for complete Python traceback. 
    19278  
    19279 Traceback (most recent call last): 
    19280 File
    19281 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19282 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19283 mouseMoveEvent 
    19284 self.moveSegmentationPuck(x, y, record_seg=False) 
    19285 File
    19286 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19287 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19288 moveSegmentationPuck 
    19289 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19290 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19291 File
    19292 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19293 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19294 return self.position.origin() 
    19295 ^^^^^^^^^^^^^ 
    19296 File
    19297 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19298 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19299 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19300 self.name) 
    19301 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19302 segmentation cursor" 
    19303  
    19304 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19305 segmentation cursor" 
    19306  
    19307 File
    19308 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19309 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19310 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19311 self.name) 
    19312  
    19313 See log for complete Python traceback. 
    19314  
    19315 Traceback (most recent call last): 
    19316 File
    19317 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19318 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19319 mouseMoveEvent 
    19320 self.moveSegmentationPuck(x, y, record_seg=False) 
    19321 File
    19322 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19323 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19324 moveSegmentationPuck 
    19325 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19326 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19327 File
    19328 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19329 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19330 return self.position.origin() 
    19331 ^^^^^^^^^^^^^ 
    19332 File
    19333 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19334 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19335 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19336 self.name) 
    19337 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19338 segmentation cursor" 
    19339  
    19340 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19341 segmentation cursor" 
    19342  
    19343 File
    19344 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19345 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19346 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19347 self.name) 
    19348  
    19349 See log for complete Python traceback. 
    19350  
    19351 Traceback (most recent call last): 
    19352 File
    19353 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19354 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19355 mouseMoveEvent 
    19356 self.moveSegmentationPuck(x, y, record_seg=False) 
    19357 File
    19358 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19359 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19360 moveSegmentationPuck 
    19361 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19362 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19363 File
    19364 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19365 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19366 return self.position.origin() 
    19367 ^^^^^^^^^^^^^ 
    19368 File
    19369 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19370 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19371 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19372 self.name) 
    19373 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19374 segmentation cursor" 
    19375  
    19376 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19377 segmentation cursor" 
    19378  
    19379 File
    19380 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19381 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19382 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19383 self.name) 
    19384  
    19385 See log for complete Python traceback. 
    19386  
    19387 Traceback (most recent call last): 
    19388 File
    19389 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19390 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19391 mouseMoveEvent 
    19392 self.moveSegmentationPuck(x, y, record_seg=False) 
    19393 File
    19394 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19395 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19396 moveSegmentationPuck 
    19397 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19398 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19399 File
    19400 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19401 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19402 return self.position.origin() 
    19403 ^^^^^^^^^^^^^ 
    19404 File
    19405 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19406 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19407 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19408 self.name) 
    19409 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19410 segmentation cursor" 
    19411  
    19412 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19413 segmentation cursor" 
    19414  
    19415 File
    19416 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19417 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19418 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19419 self.name) 
    19420  
    19421 See log for complete Python traceback. 
    19422  
    19423 Traceback (most recent call last): 
    19424 File
    19425 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19426 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19427 mouseMoveEvent 
    19428 self.moveSegmentationPuck(x, y, record_seg=False) 
    19429 File
    19430 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19431 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19432 moveSegmentationPuck 
    19433 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19434 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19435 File
    19436 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19437 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19438 return self.position.origin() 
    19439 ^^^^^^^^^^^^^ 
    19440 File
    19441 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19442 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19443 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19444 self.name) 
    19445 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19446 segmentation cursor" 
    19447  
    19448 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19449 segmentation cursor" 
    19450  
    19451 File
    19452 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19453 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19454 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19455 self.name) 
    19456  
    19457 See log for complete Python traceback. 
    19458  
    19459 Traceback (most recent call last): 
    19460 File
    19461 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19462 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19463 mouseMoveEvent 
    19464 self.moveSegmentationPuck(x, y, record_seg=False) 
    19465 File
    19466 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19467 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19468 moveSegmentationPuck 
    19469 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19470 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19471 File
    19472 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19473 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19474 return self.position.origin() 
    19475 ^^^^^^^^^^^^^ 
    19476 File
    19477 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19478 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19479 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19480 self.name) 
    19481 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19482 segmentation cursor" 
    19483  
    19484 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19485 segmentation cursor" 
    19486  
    19487 File
    19488 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19489 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19490 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19491 self.name) 
    19492  
    19493 See log for complete Python traceback. 
    19494  
    19495 Traceback (most recent call last): 
    19496 File
    19497 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19498 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19499 mouseMoveEvent 
    19500 self.moveSegmentationPuck(x, y, record_seg=False) 
    19501 File
    19502 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19503 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19504 moveSegmentationPuck 
    19505 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19506 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19507 File
    19508 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19509 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19510 return self.position.origin() 
    19511 ^^^^^^^^^^^^^ 
    19512 File
    19513 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19514 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19515 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19516 self.name) 
    19517 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19518 segmentation cursor" 
    19519  
    19520 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19521 segmentation cursor" 
    19522  
    19523 File
    19524 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19525 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19526 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19527 self.name) 
    19528  
    19529 See log for complete Python traceback. 
    19530  
    19531 Traceback (most recent call last): 
    19532 File
    19533 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19534 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19535 mouseMoveEvent 
    19536 self.moveSegmentationPuck(x, y, record_seg=False) 
    19537 File
    19538 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19539 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19540 moveSegmentationPuck 
    19541 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19542 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19543 File
    19544 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19545 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19546 return self.position.origin() 
    19547 ^^^^^^^^^^^^^ 
    19548 File
    19549 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19550 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19551 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19552 self.name) 
    19553 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19554 segmentation cursor" 
    19555  
    19556 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19557 segmentation cursor" 
    19558  
    19559 File
    19560 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19561 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19562 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19563 self.name) 
    19564  
    19565 See log for complete Python traceback. 
    19566  
    19567 Traceback (most recent call last): 
    19568 File
    19569 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19570 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19571 mouseMoveEvent 
    19572 self.moveSegmentationPuck(x, y, record_seg=False) 
    19573 File
    19574 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19575 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19576 moveSegmentationPuck 
    19577 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19578 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19579 File
    19580 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19581 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19582 return self.position.origin() 
    19583 ^^^^^^^^^^^^^ 
    19584 File
    19585 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19586 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19587 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19588 self.name) 
    19589 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19590 segmentation cursor" 
    19591  
    19592 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19593 segmentation cursor" 
    19594  
    19595 File
    19596 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19597 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19598 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19599 self.name) 
    19600  
    19601 See log for complete Python traceback. 
    19602  
    19603 Traceback (most recent call last): 
    19604 File
    19605 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19606 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19607 mouseMoveEvent 
    19608 self.moveSegmentationPuck(x, y, record_seg=False) 
    19609 File
    19610 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19611 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19612 moveSegmentationPuck 
    19613 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19614 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19615 File
    19616 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19617 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19618 return self.position.origin() 
    19619 ^^^^^^^^^^^^^ 
    19620 File
    19621 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19622 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19623 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19624 self.name) 
    19625 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19626 segmentation cursor" 
    19627  
    19628 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19629 segmentation cursor" 
    19630  
    19631 File
    19632 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19633 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19634 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19635 self.name) 
    19636  
    19637 See log for complete Python traceback. 
    19638  
    19639 Traceback (most recent call last): 
    19640 File
    19641 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19642 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19643 mouseMoveEvent 
    19644 self.moveSegmentationPuck(x, y, record_seg=False) 
    19645 File
    19646 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19647 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19648 moveSegmentationPuck 
    19649 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19650 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19651 File
    19652 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19653 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19654 return self.position.origin() 
    19655 ^^^^^^^^^^^^^ 
    19656 File
    19657 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19658 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19659 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19660 self.name) 
    19661 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19662 segmentation cursor" 
    19663  
    19664 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19665 segmentation cursor" 
    19666  
    19667 File
    19668 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19669 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19670 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19671 self.name) 
    19672  
    19673 See log for complete Python traceback. 
    19674  
    19675 Traceback (most recent call last): 
    19676 File
    19677 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19678 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19679 mouseMoveEvent 
    19680 self.moveSegmentationPuck(x, y, record_seg=False) 
    19681 File
    19682 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19683 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19684 moveSegmentationPuck 
    19685 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19686 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19687 File
    19688 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19689 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19690 return self.position.origin() 
    19691 ^^^^^^^^^^^^^ 
    19692 File
    19693 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19694 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19695 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19696 self.name) 
    19697 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19698 segmentation cursor" 
    19699  
    19700 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19701 segmentation cursor" 
    19702  
    19703 File
    19704 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19705 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19706 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19707 self.name) 
    19708  
    19709 See log for complete Python traceback. 
    19710  
    19711 Traceback (most recent call last): 
    19712 File
    19713 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19714 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19715 mouseMoveEvent 
    19716 self.moveSegmentationPuck(x, y, record_seg=False) 
    19717 File
    19718 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19719 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19720 moveSegmentationPuck 
    19721 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19722 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19723 File
    19724 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19725 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19726 return self.position.origin() 
    19727 ^^^^^^^^^^^^^ 
    19728 File
    19729 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19730 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19731 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19732 self.name) 
    19733 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19734 segmentation cursor" 
    19735  
    19736 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19737 segmentation cursor" 
    19738  
    19739 File
    19740 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19741 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19742 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19743 self.name) 
    19744  
    19745 See log for complete Python traceback. 
    19746  
    19747 Traceback (most recent call last): 
    19748 File
    19749 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19750 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19751 mouseMoveEvent 
    19752 self.moveSegmentationPuck(x, y, record_seg=False) 
    19753 File
    19754 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19755 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19756 moveSegmentationPuck 
    19757 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19758 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19759 File
    19760 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19761 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19762 return self.position.origin() 
    19763 ^^^^^^^^^^^^^ 
    19764 File
    19765 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19766 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19767 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19768 self.name) 
    19769 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19770 segmentation cursor" 
    19771  
    19772 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19773 segmentation cursor" 
    19774  
    19775 File
    19776 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19777 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19778 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19779 self.name) 
    19780  
    19781 See log for complete Python traceback. 
    19782  
    19783 Traceback (most recent call last): 
    19784 File
    19785 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19786 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19787 mouseMoveEvent 
    19788 self.moveSegmentationPuck(x, y, record_seg=False) 
    19789 File
    19790 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19791 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19792 moveSegmentationPuck 
    19793 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19794 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19795 File
    19796 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19797 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19798 return self.position.origin() 
    19799 ^^^^^^^^^^^^^ 
    19800 File
    19801 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19802 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19803 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19804 self.name) 
    19805 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19806 segmentation cursor" 
    19807  
    19808 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19809 segmentation cursor" 
    19810  
    19811 File
    19812 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19813 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19814 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19815 self.name) 
    19816  
    19817 See log for complete Python traceback. 
    19818  
    19819 Traceback (most recent call last): 
    19820 File
    19821 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19822 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19823 mouseMoveEvent 
    19824 self.moveSegmentationPuck(x, y, record_seg=False) 
    19825 File
    19826 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19827 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19828 moveSegmentationPuck 
    19829 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19830 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19831 File
    19832 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19833 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19834 return self.position.origin() 
    19835 ^^^^^^^^^^^^^ 
    19836 File
    19837 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19838 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19839 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19840 self.name) 
    19841 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19842 segmentation cursor" 
    19843  
    19844 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19845 segmentation cursor" 
    19846  
    19847 File
    19848 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19849 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19850 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19851 self.name) 
    19852  
    19853 See log for complete Python traceback. 
    19854  
    19855 Traceback (most recent call last): 
    19856 File
    19857 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19858 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19859 mouseMoveEvent 
    19860 self.moveSegmentationPuck(x, y, record_seg=False) 
    19861 File
    19862 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19863 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19864 moveSegmentationPuck 
    19865 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19866 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19867 File
    19868 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19869 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19870 return self.position.origin() 
    19871 ^^^^^^^^^^^^^ 
    19872 File
    19873 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19874 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19875 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19876 self.name) 
    19877 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19878 segmentation cursor" 
    19879  
    19880 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19881 segmentation cursor" 
    19882  
    19883 File
    19884 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19885 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19886 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19887 self.name) 
    19888  
    19889 See log for complete Python traceback. 
    19890  
    19891 Traceback (most recent call last): 
    19892 File
    19893 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19894 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19895 mouseMoveEvent 
    19896 self.moveSegmentationPuck(x, y, record_seg=False) 
    19897 File
    19898 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19899 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19900 moveSegmentationPuck 
    19901 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19902 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19903 File
    19904 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19905 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19906 return self.position.origin() 
    19907 ^^^^^^^^^^^^^ 
    19908 File
    19909 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19910 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19911 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19912 self.name) 
    19913 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19914 segmentation cursor" 
    19915  
    19916 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19917 segmentation cursor" 
    19918  
    19919 File
    19920 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19921 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19922 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19923 self.name) 
    19924  
    19925 See log for complete Python traceback. 
    19926  
    19927 Traceback (most recent call last): 
    19928 File
    19929 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19930 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19931 mouseMoveEvent 
    19932 self.moveSegmentationPuck(x, y, record_seg=False) 
    19933 File
    19934 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19935 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19936 moveSegmentationPuck 
    19937 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19938 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19939 File
    19940 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19941 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19942 return self.position.origin() 
    19943 ^^^^^^^^^^^^^ 
    19944 File
    19945 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19946 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19947 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19948 self.name) 
    19949 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19950 segmentation cursor" 
    19951  
    19952 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19953 segmentation cursor" 
    19954  
    19955 File
    19956 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19957 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19958 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19959 self.name) 
    19960  
    19961 See log for complete Python traceback. 
    19962  
    19963 Traceback (most recent call last): 
    19964 File
    19965 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19966 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    19967 mouseMoveEvent 
    19968 self.moveSegmentationPuck(x, y, record_seg=False) 
    19969 File
    19970 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19971 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    19972 moveSegmentationPuck 
    19973 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    19974 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    19975 File
    19976 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19977 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    19978 return self.position.origin() 
    19979 ^^^^^^^^^^^^^ 
    19980 File
    19981 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19982 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19983 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19984 self.name) 
    19985 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19986 segmentation cursor" 
    19987  
    19988 RuntimeError: Tried to get the position of deleted drawing "sagittal
    19989 segmentation cursor" 
    19990  
    19991 File
    19992 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    19993 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    19994 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    19995 self.name) 
    19996  
    19997 See log for complete Python traceback. 
    19998  
    19999 Traceback (most recent call last): 
    20000 File
    20001 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20002 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20003 mouseMoveEvent 
    20004 self.moveSegmentationPuck(x, y, record_seg=False) 
    20005 File
    20006 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20007 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20008 moveSegmentationPuck 
    20009 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20010 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20011 File
    20012 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20013 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20014 return self.position.origin() 
    20015 ^^^^^^^^^^^^^ 
    20016 File
    20017 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20018 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20019 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20020 self.name) 
    20021 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20022 segmentation cursor" 
    20023  
    20024 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20025 segmentation cursor" 
    20026  
    20027 File
    20028 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20029 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20030 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20031 self.name) 
    20032  
    20033 See log for complete Python traceback. 
    20034  
    20035 Traceback (most recent call last): 
    20036 File
    20037 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20038 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20039 mouseMoveEvent 
    20040 self.moveSegmentationPuck(x, y, record_seg=False) 
    20041 File
    20042 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20043 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20044 moveSegmentationPuck 
    20045 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20046 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20047 File
    20048 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20049 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20050 return self.position.origin() 
    20051 ^^^^^^^^^^^^^ 
    20052 File
    20053 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20054 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20055 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20056 self.name) 
    20057 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20058 segmentation cursor" 
    20059  
    20060 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20061 segmentation cursor" 
    20062  
    20063 File
    20064 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20065 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20066 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20067 self.name) 
    20068  
    20069 See log for complete Python traceback. 
    20070  
    20071 Traceback (most recent call last): 
    20072 File
    20073 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20074 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20075 mouseMoveEvent 
    20076 self.moveSegmentationPuck(x, y, record_seg=False) 
    20077 File
    20078 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20079 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20080 moveSegmentationPuck 
    20081 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20082 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20083 File
    20084 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20085 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20086 return self.position.origin() 
    20087 ^^^^^^^^^^^^^ 
    20088 File
    20089 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20090 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20091 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20092 self.name) 
    20093 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20094 segmentation cursor" 
    20095  
    20096 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20097 segmentation cursor" 
    20098  
    20099 File
    20100 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20101 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20102 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20103 self.name) 
    20104  
    20105 See log for complete Python traceback. 
    20106  
    20107 Traceback (most recent call last): 
    20108 File
    20109 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20110 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20111 mouseMoveEvent 
    20112 self.moveSegmentationPuck(x, y, record_seg=False) 
    20113 File
    20114 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20115 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20116 moveSegmentationPuck 
    20117 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20118 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20119 File
    20120 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20121 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20122 return self.position.origin() 
    20123 ^^^^^^^^^^^^^ 
    20124 File
    20125 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20126 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20127 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20128 self.name) 
    20129 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20130 segmentation cursor" 
    20131  
    20132 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20133 segmentation cursor" 
    20134  
    20135 File
    20136 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20137 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20138 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20139 self.name) 
    20140  
    20141 See log for complete Python traceback. 
    20142  
    20143 Traceback (most recent call last): 
    20144 File
    20145 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20146 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20147 mouseMoveEvent 
    20148 self.moveSegmentationPuck(x, y, record_seg=False) 
    20149 File
    20150 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20151 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20152 moveSegmentationPuck 
    20153 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20154 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20155 File
    20156 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20157 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20158 return self.position.origin() 
    20159 ^^^^^^^^^^^^^ 
    20160 File
    20161 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20162 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20163 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20164 self.name) 
    20165 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20166 segmentation cursor" 
    20167  
    20168 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20169 segmentation cursor" 
    20170  
    20171 File
    20172 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20173 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20174 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20175 self.name) 
    20176  
    20177 See log for complete Python traceback. 
    20178  
    20179 Traceback (most recent call last): 
    20180 File
    20181 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20182 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20183 mouseMoveEvent 
    20184 self.moveSegmentationPuck(x, y, record_seg=False) 
    20185 File
    20186 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20187 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20188 moveSegmentationPuck 
    20189 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20190 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20191 File
    20192 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20193 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20194 return self.position.origin() 
    20195 ^^^^^^^^^^^^^ 
    20196 File
    20197 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20198 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20199 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20200 self.name) 
    20201 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20202 segmentation cursor" 
    20203  
    20204 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20205 segmentation cursor" 
    20206  
    20207 File
    20208 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20209 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20210 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20211 self.name) 
    20212  
    20213 See log for complete Python traceback. 
    20214  
    20215 Traceback (most recent call last): 
    20216 File
    20217 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20218 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20219 mouseMoveEvent 
    20220 self.moveSegmentationPuck(x, y, record_seg=False) 
    20221 File
    20222 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20223 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20224 moveSegmentationPuck 
    20225 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20226 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20227 File
    20228 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20229 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20230 return self.position.origin() 
    20231 ^^^^^^^^^^^^^ 
    20232 File
    20233 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20234 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20235 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20236 self.name) 
    20237 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20238 segmentation cursor" 
    20239  
    20240 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20241 segmentation cursor" 
    20242  
    20243 File
    20244 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20245 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20246 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20247 self.name) 
    20248  
    20249 See log for complete Python traceback. 
    20250  
    20251 Traceback (most recent call last): 
    20252 File
    20253 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20254 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20255 mouseMoveEvent 
    20256 self.moveSegmentationPuck(x, y, record_seg=False) 
    20257 File
    20258 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20259 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20260 moveSegmentationPuck 
    20261 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20262 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20263 File
    20264 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20265 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20266 return self.position.origin() 
    20267 ^^^^^^^^^^^^^ 
    20268 File
    20269 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20270 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20271 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20272 self.name) 
    20273 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20274 segmentation cursor" 
    20275  
    20276 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20277 segmentation cursor" 
    20278  
    20279 File
    20280 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20281 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20282 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20283 self.name) 
    20284  
    20285 See log for complete Python traceback. 
    20286  
    20287 Traceback (most recent call last): 
    20288 File
    20289 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20290 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20291 mouseMoveEvent 
    20292 self.moveSegmentationPuck(x, y, record_seg=False) 
    20293 File
    20294 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20295 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20296 moveSegmentationPuck 
    20297 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20298 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20299 File
    20300 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20301 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20302 return self.position.origin() 
    20303 ^^^^^^^^^^^^^ 
    20304 File
    20305 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20306 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20307 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20308 self.name) 
    20309 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20310 segmentation cursor" 
    20311  
    20312 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20313 segmentation cursor" 
    20314  
    20315 File
    20316 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20317 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20318 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20319 self.name) 
    20320  
    20321 See log for complete Python traceback. 
    20322  
    20323 Traceback (most recent call last): 
    20324 File
    20325 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20326 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20327 mouseMoveEvent 
    20328 self.moveSegmentationPuck(x, y, record_seg=False) 
    20329 File
    20330 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20331 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20332 moveSegmentationPuck 
    20333 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20334 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20335 File
    20336 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20337 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20338 return self.position.origin() 
    20339 ^^^^^^^^^^^^^ 
    20340 File
    20341 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20342 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20343 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20344 self.name) 
    20345 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20346 segmentation cursor" 
    20347  
    20348 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20349 segmentation cursor" 
    20350  
    20351 File
    20352 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20353 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20354 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20355 self.name) 
    20356  
    20357 See log for complete Python traceback. 
    20358  
    20359 Traceback (most recent call last): 
    20360 File
    20361 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20362 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20363 mouseMoveEvent 
    20364 self.moveSegmentationPuck(x, y, record_seg=False) 
    20365 File
    20366 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20367 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20368 moveSegmentationPuck 
    20369 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20370 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20371 File
    20372 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20373 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20374 return self.position.origin() 
    20375 ^^^^^^^^^^^^^ 
    20376 File
    20377 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20378 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20379 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20380 self.name) 
    20381 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20382 segmentation cursor" 
    20383  
    20384 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20385 segmentation cursor" 
    20386  
    20387 File
    20388 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20389 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20390 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20391 self.name) 
    20392  
    20393 See log for complete Python traceback. 
    20394  
    20395 Traceback (most recent call last): 
    20396 File
    20397 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20398 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20399 mouseMoveEvent 
    20400 self.moveSegmentationPuck(x, y, record_seg=False) 
    20401 File
    20402 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20403 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20404 moveSegmentationPuck 
    20405 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20406 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20407 File
    20408 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20409 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20410 return self.position.origin() 
    20411 ^^^^^^^^^^^^^ 
    20412 File
    20413 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20414 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20415 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20416 self.name) 
    20417 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20418 segmentation cursor" 
    20419  
    20420 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20421 segmentation cursor" 
    20422  
    20423 File
    20424 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20425 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20426 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20427 self.name) 
    20428  
    20429 See log for complete Python traceback. 
    20430  
    20431 Traceback (most recent call last): 
    20432 File
    20433 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20434 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20435 mouseMoveEvent 
    20436 self.moveSegmentationPuck(x, y, record_seg=False) 
    20437 File
    20438 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20439 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20440 moveSegmentationPuck 
    20441 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20442 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20443 File
    20444 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20445 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20446 return self.position.origin() 
    20447 ^^^^^^^^^^^^^ 
    20448 File
    20449 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20450 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20451 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20452 self.name) 
    20453 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20454 segmentation cursor" 
    20455  
    20456 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20457 segmentation cursor" 
    20458  
    20459 File
    20460 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20461 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20462 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20463 self.name) 
    20464  
    20465 See log for complete Python traceback. 
    20466  
    20467 Traceback (most recent call last): 
    20468 File
    20469 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20470 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20471 mouseMoveEvent 
    20472 self.moveSegmentationPuck(x, y, record_seg=False) 
    20473 File
    20474 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20475 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20476 moveSegmentationPuck 
    20477 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20478 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20479 File
    20480 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20481 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20482 return self.position.origin() 
    20483 ^^^^^^^^^^^^^ 
    20484 File
    20485 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20486 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20487 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20488 self.name) 
    20489 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20490 segmentation cursor" 
    20491  
    20492 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20493 segmentation cursor" 
    20494  
    20495 File
    20496 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20497 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20498 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20499 self.name) 
    20500  
    20501 See log for complete Python traceback. 
    20502  
    20503 Traceback (most recent call last): 
    20504 File
    20505 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20506 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20507 mouseMoveEvent 
    20508 self.moveSegmentationPuck(x, y, record_seg=False) 
    20509 File
    20510 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20511 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20512 moveSegmentationPuck 
    20513 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20514 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20515 File
    20516 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20517 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20518 return self.position.origin() 
    20519 ^^^^^^^^^^^^^ 
    20520 File
    20521 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20522 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20523 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20524 self.name) 
    20525 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20526 segmentation cursor" 
    20527  
    20528 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20529 segmentation cursor" 
    20530  
    20531 File
    20532 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20533 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20534 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20535 self.name) 
    20536  
    20537 See log for complete Python traceback. 
    20538  
    20539 Traceback (most recent call last): 
    20540 File
    20541 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20542 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20543 mouseMoveEvent 
    20544 self.moveSegmentationPuck(x, y, record_seg=False) 
    20545 File
    20546 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20547 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20548 moveSegmentationPuck 
    20549 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20550 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20551 File
    20552 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20553 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20554 return self.position.origin() 
    20555 ^^^^^^^^^^^^^ 
    20556 File
    20557 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20558 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20559 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20560 self.name) 
    20561 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20562 segmentation cursor" 
    20563  
    20564 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20565 segmentation cursor" 
    20566  
    20567 File
    20568 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20569 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20570 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20571 self.name) 
    20572  
    20573 See log for complete Python traceback. 
    20574  
    20575 Traceback (most recent call last): 
    20576 File
    20577 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20578 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20579 mouseMoveEvent 
    20580 self.moveSegmentationPuck(x, y, record_seg=False) 
    20581 File
    20582 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20583 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20584 moveSegmentationPuck 
    20585 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20586 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20587 File
    20588 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20589 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20590 return self.position.origin() 
    20591 ^^^^^^^^^^^^^ 
    20592 File
    20593 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20594 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20595 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20596 self.name) 
    20597 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20598 segmentation cursor" 
    20599  
    20600 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20601 segmentation cursor" 
    20602  
    20603 File
    20604 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20605 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20606 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20607 self.name) 
    20608  
    20609 See log for complete Python traceback. 
    20610  
    20611 Traceback (most recent call last): 
    20612 File
    20613 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20614 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20615 mouseMoveEvent 
    20616 self.moveSegmentationPuck(x, y, record_seg=False) 
    20617 File
    20618 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20619 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20620 moveSegmentationPuck 
    20621 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20622 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20623 File
    20624 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20625 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20626 return self.position.origin() 
    20627 ^^^^^^^^^^^^^ 
    20628 File
    20629 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20630 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20631 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20632 self.name) 
    20633 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20634 segmentation cursor" 
    20635  
    20636 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20637 segmentation cursor" 
    20638  
    20639 File
    20640 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20641 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20642 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20643 self.name) 
    20644  
    20645 See log for complete Python traceback. 
    20646  
    20647 Traceback (most recent call last): 
    20648 File
    20649 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20650 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20651 mouseMoveEvent 
    20652 self.moveSegmentationPuck(x, y, record_seg=False) 
    20653 File
    20654 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20655 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20656 moveSegmentationPuck 
    20657 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20658 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20659 File
    20660 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20661 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20662 return self.position.origin() 
    20663 ^^^^^^^^^^^^^ 
    20664 File
    20665 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20666 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20667 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20668 self.name) 
    20669 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20670 segmentation cursor" 
    20671  
    20672 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20673 segmentation cursor" 
    20674  
    20675 File
    20676 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20677 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20678 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20679 self.name) 
    20680  
    20681 See log for complete Python traceback. 
    20682  
    20683 Traceback (most recent call last): 
    20684 File
    20685 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20686 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20687 mouseMoveEvent 
    20688 self.moveSegmentationPuck(x, y, record_seg=False) 
    20689 File
    20690 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20691 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20692 moveSegmentationPuck 
    20693 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20694 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20695 File
    20696 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20697 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20698 return self.position.origin() 
    20699 ^^^^^^^^^^^^^ 
    20700 File
    20701 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20702 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20703 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20704 self.name) 
    20705 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20706 segmentation cursor" 
    20707  
    20708 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20709 segmentation cursor" 
    20710  
    20711 File
    20712 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20713 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20714 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20715 self.name) 
    20716  
    20717 See log for complete Python traceback. 
    20718  
    20719 Traceback (most recent call last): 
    20720 File
    20721 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20722 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20723 mouseMoveEvent 
    20724 self.moveSegmentationPuck(x, y, record_seg=False) 
    20725 File
    20726 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20727 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20728 moveSegmentationPuck 
    20729 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20730 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20731 File
    20732 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20733 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20734 return self.position.origin() 
    20735 ^^^^^^^^^^^^^ 
    20736 File
    20737 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20738 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20739 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20740 self.name) 
    20741 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20742 segmentation cursor" 
    20743  
    20744 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20745 segmentation cursor" 
    20746  
    20747 File
    20748 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20749 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20750 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20751 self.name) 
    20752  
    20753 See log for complete Python traceback. 
    20754  
    20755 Traceback (most recent call last): 
    20756 File
    20757 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20758 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20759 mouseMoveEvent 
    20760 self.moveSegmentationPuck(x, y, record_seg=False) 
    20761 File
    20762 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20763 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20764 moveSegmentationPuck 
    20765 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20766 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20767 File
    20768 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20769 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20770 return self.position.origin() 
    20771 ^^^^^^^^^^^^^ 
    20772 File
    20773 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20774 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20775 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20776 self.name) 
    20777 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20778 segmentation cursor" 
    20779  
    20780 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20781 segmentation cursor" 
    20782  
    20783 File
    20784 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20785 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20786 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20787 self.name) 
    20788  
    20789 See log for complete Python traceback. 
    20790  
    20791 Traceback (most recent call last): 
    20792 File
    20793 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20794 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20795 mouseMoveEvent 
    20796 self.moveSegmentationPuck(x, y, record_seg=False) 
    20797 File
    20798 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20799 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20800 moveSegmentationPuck 
    20801 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20802 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20803 File
    20804 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20805 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20806 return self.position.origin() 
    20807 ^^^^^^^^^^^^^ 
    20808 File
    20809 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20810 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20811 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20812 self.name) 
    20813 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20814 segmentation cursor" 
    20815  
    20816 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20817 segmentation cursor" 
    20818  
    20819 File
    20820 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20821 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20822 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20823 self.name) 
    20824  
    20825 See log for complete Python traceback. 
    20826  
    20827 Traceback (most recent call last): 
    20828 File
    20829 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20830 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20831 mouseMoveEvent 
    20832 self.moveSegmentationPuck(x, y, record_seg=False) 
    20833 File
    20834 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20835 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20836 moveSegmentationPuck 
    20837 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20838 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20839 File
    20840 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20841 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20842 return self.position.origin() 
    20843 ^^^^^^^^^^^^^ 
    20844 File
    20845 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20846 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20847 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20848 self.name) 
    20849 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20850 segmentation cursor" 
    20851  
    20852 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20853 segmentation cursor" 
    20854  
    20855 File
    20856 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20857 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20858 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20859 self.name) 
    20860  
    20861 See log for complete Python traceback. 
    20862  
    20863 Traceback (most recent call last): 
    20864 File
    20865 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20866 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20867 mouseMoveEvent 
    20868 self.moveSegmentationPuck(x, y, record_seg=False) 
    20869 File
    20870 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20871 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20872 moveSegmentationPuck 
    20873 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20874 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20875 File
    20876 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20877 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20878 return self.position.origin() 
    20879 ^^^^^^^^^^^^^ 
    20880 File
    20881 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20882 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20883 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20884 self.name) 
    20885 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20886 segmentation cursor" 
    20887  
    20888 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20889 segmentation cursor" 
    20890  
    20891 File
    20892 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20893 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20894 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20895 self.name) 
    20896  
    20897 See log for complete Python traceback. 
    20898  
    20899 Traceback (most recent call last): 
    20900 File
    20901 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20902 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20903 mouseMoveEvent 
    20904 self.moveSegmentationPuck(x, y, record_seg=False) 
    20905 File
    20906 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20907 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20908 moveSegmentationPuck 
    20909 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20910 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20911 File
    20912 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20913 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20914 return self.position.origin() 
    20915 ^^^^^^^^^^^^^ 
    20916 File
    20917 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20918 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20919 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20920 self.name) 
    20921 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20922 segmentation cursor" 
    20923  
    20924 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20925 segmentation cursor" 
    20926  
    20927 File
    20928 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20929 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20930 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20931 self.name) 
    20932  
    20933 See log for complete Python traceback. 
    20934  
    20935 Traceback (most recent call last): 
    20936 File
    20937 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20938 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20939 mouseMoveEvent 
    20940 self.moveSegmentationPuck(x, y, record_seg=False) 
    20941 File
    20942 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20943 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20944 moveSegmentationPuck 
    20945 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20946 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20947 File
    20948 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20949 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20950 return self.position.origin() 
    20951 ^^^^^^^^^^^^^ 
    20952 File
    20953 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20954 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20955 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20956 self.name) 
    20957 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20958 segmentation cursor" 
    20959  
    20960 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20961 segmentation cursor" 
    20962  
    20963 File
    20964 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20965 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20966 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20967 self.name) 
    20968  
    20969 See log for complete Python traceback. 
    20970  
    20971 Traceback (most recent call last): 
    20972 File
    20973 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20974 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    20975 mouseMoveEvent 
    20976 self.moveSegmentationPuck(x, y, record_seg=False) 
    20977 File
    20978 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20979 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    20980 moveSegmentationPuck 
    20981 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    20982 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    20983 File
    20984 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20985 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    20986 return self.position.origin() 
    20987 ^^^^^^^^^^^^^ 
    20988 File
    20989 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    20990 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    20991 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    20992 self.name) 
    20993 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20994 segmentation cursor" 
    20995  
    20996 RuntimeError: Tried to get the position of deleted drawing "sagittal
    20997 segmentation cursor" 
    20998  
    20999 File
    21000 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21001 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21002 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21003 self.name) 
    21004  
    21005 See log for complete Python traceback. 
    21006  
    21007 Traceback (most recent call last): 
    21008 File
    21009 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21010 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21011 mouseMoveEvent 
    21012 self.moveSegmentationPuck(x, y, record_seg=False) 
    21013 File
    21014 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21015 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21016 moveSegmentationPuck 
    21017 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21018 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21019 File
    21020 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21021 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21022 return self.position.origin() 
    21023 ^^^^^^^^^^^^^ 
    21024 File
    21025 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21026 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21027 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21028 self.name) 
    21029 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21030 segmentation cursor" 
    21031  
    21032 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21033 segmentation cursor" 
    21034  
    21035 File
    21036 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21037 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21038 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21039 self.name) 
    21040  
    21041 See log for complete Python traceback. 
    21042  
    21043 Traceback (most recent call last): 
    21044 File
    21045 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21046 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21047 mouseMoveEvent 
    21048 self.moveSegmentationPuck(x, y, record_seg=False) 
    21049 File
    21050 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21051 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21052 moveSegmentationPuck 
    21053 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21054 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21055 File
    21056 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21057 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21058 return self.position.origin() 
    21059 ^^^^^^^^^^^^^ 
    21060 File
    21061 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21062 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21063 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21064 self.name) 
    21065 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21066 segmentation cursor" 
    21067  
    21068 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21069 segmentation cursor" 
    21070  
    21071 File
    21072 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21073 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21074 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21075 self.name) 
    21076  
    21077 See log for complete Python traceback. 
    21078  
    21079 Traceback (most recent call last): 
    21080 File
    21081 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21082 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21083 mouseMoveEvent 
    21084 self.moveSegmentationPuck(x, y, record_seg=False) 
    21085 File
    21086 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21087 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21088 moveSegmentationPuck 
    21089 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21090 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21091 File
    21092 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21093 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21094 return self.position.origin() 
    21095 ^^^^^^^^^^^^^ 
    21096 File
    21097 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21098 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21099 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21100 self.name) 
    21101 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21102 segmentation cursor" 
    21103  
    21104 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21105 segmentation cursor" 
    21106  
    21107 File
    21108 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21109 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21110 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21111 self.name) 
    21112  
    21113 See log for complete Python traceback. 
    21114  
    21115 Traceback (most recent call last): 
    21116 File
    21117 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21118 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21119 mouseMoveEvent 
    21120 self.moveSegmentationPuck(x, y, record_seg=False) 
    21121 File
    21122 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21123 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21124 moveSegmentationPuck 
    21125 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21126 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21127 File
    21128 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21129 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21130 return self.position.origin() 
    21131 ^^^^^^^^^^^^^ 
    21132 File
    21133 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21134 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21135 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21136 self.name) 
    21137 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21138 segmentation cursor" 
    21139  
    21140 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21141 segmentation cursor" 
    21142  
    21143 File
    21144 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21145 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21146 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21147 self.name) 
    21148  
    21149 See log for complete Python traceback. 
    21150  
    21151 Traceback (most recent call last): 
    21152 File
    21153 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21154 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21155 mouseMoveEvent 
    21156 self.moveSegmentationPuck(x, y, record_seg=False) 
    21157 File
    21158 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21159 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21160 moveSegmentationPuck 
    21161 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21162 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21163 File
    21164 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21165 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21166 return self.position.origin() 
    21167 ^^^^^^^^^^^^^ 
    21168 File
    21169 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21170 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21171 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21172 self.name) 
    21173 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21174 segmentation cursor" 
    21175  
    21176 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21177 segmentation cursor" 
    21178  
    21179 File
    21180 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21181 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21182 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21183 self.name) 
    21184  
    21185 See log for complete Python traceback. 
    21186  
    21187 Traceback (most recent call last): 
    21188 File
    21189 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21190 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21191 mouseMoveEvent 
    21192 self.moveSegmentationPuck(x, y, record_seg=False) 
    21193 File
    21194 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21195 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21196 moveSegmentationPuck 
    21197 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21198 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21199 File
    21200 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21201 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21202 return self.position.origin() 
    21203 ^^^^^^^^^^^^^ 
    21204 File
    21205 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21206 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21207 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21208 self.name) 
    21209 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21210 segmentation cursor" 
    21211  
    21212 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21213 segmentation cursor" 
    21214  
    21215 File
    21216 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21217 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21218 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21219 self.name) 
    21220  
    21221 See log for complete Python traceback. 
    21222  
    21223 Traceback (most recent call last): 
    21224 File
    21225 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21226 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21227 mouseMoveEvent 
    21228 self.moveSegmentationPuck(x, y, record_seg=False) 
    21229 File
    21230 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21231 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21232 moveSegmentationPuck 
    21233 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21234 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21235 File
    21236 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21237 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21238 return self.position.origin() 
    21239 ^^^^^^^^^^^^^ 
    21240 File
    21241 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21242 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21243 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21244 self.name) 
    21245 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21246 segmentation cursor" 
    21247  
    21248 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21249 segmentation cursor" 
    21250  
    21251 File
    21252 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21253 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21254 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21255 self.name) 
    21256  
    21257 See log for complete Python traceback. 
    21258  
    21259 Traceback (most recent call last): 
    21260 File
    21261 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21262 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21263 mouseMoveEvent 
    21264 self.moveSegmentationPuck(x, y, record_seg=False) 
    21265 File
    21266 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21267 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21268 moveSegmentationPuck 
    21269 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21270 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21271 File
    21272 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21273 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21274 return self.position.origin() 
    21275 ^^^^^^^^^^^^^ 
    21276 File
    21277 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21278 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21279 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21280 self.name) 
    21281 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21282 segmentation cursor" 
    21283  
    21284 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21285 segmentation cursor" 
    21286  
    21287 File
    21288 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21289 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21290 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21291 self.name) 
    21292  
    21293 See log for complete Python traceback. 
    21294  
    21295 Traceback (most recent call last): 
    21296 File
    21297 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21298 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21299 mouseMoveEvent 
    21300 self.moveSegmentationPuck(x, y, record_seg=False) 
    21301 File
    21302 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21303 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21304 moveSegmentationPuck 
    21305 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21306 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21307 File
    21308 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21309 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21310 return self.position.origin() 
    21311 ^^^^^^^^^^^^^ 
    21312 File
    21313 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21314 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21315 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21316 self.name) 
    21317 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21318 segmentation cursor" 
    21319  
    21320 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21321 segmentation cursor" 
    21322  
    21323 File
    21324 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21325 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21326 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21327 self.name) 
    21328  
    21329 See log for complete Python traceback. 
    21330  
    21331 Traceback (most recent call last): 
    21332 File
    21333 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21334 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21335 mouseMoveEvent 
    21336 self.moveSegmentationPuck(x, y, record_seg=False) 
    21337 File
    21338 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21339 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21340 moveSegmentationPuck 
    21341 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21342 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21343 File
    21344 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21345 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21346 return self.position.origin() 
    21347 ^^^^^^^^^^^^^ 
    21348 File
    21349 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21350 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21351 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21352 self.name) 
    21353 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21354 segmentation cursor" 
    21355  
    21356 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21357 segmentation cursor" 
    21358  
    21359 File
    21360 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21361 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21362 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21363 self.name) 
    21364  
    21365 See log for complete Python traceback. 
    21366  
    21367 Traceback (most recent call last): 
    21368 File
    21369 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21370 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21371 mouseMoveEvent 
    21372 self.moveSegmentationPuck(x, y, record_seg=False) 
    21373 File
    21374 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21375 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21376 moveSegmentationPuck 
    21377 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21378 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21379 File
    21380 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21381 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21382 return self.position.origin() 
    21383 ^^^^^^^^^^^^^ 
    21384 File
    21385 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21386 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21387 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21388 self.name) 
    21389 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21390 segmentation cursor" 
    21391  
    21392 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21393 segmentation cursor" 
    21394  
    21395 File
    21396 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21397 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21398 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21399 self.name) 
    21400  
    21401 See log for complete Python traceback. 
    21402  
    21403 Traceback (most recent call last): 
    21404 File
    21405 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21406 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21407 mouseMoveEvent 
    21408 self.moveSegmentationPuck(x, y, record_seg=False) 
    21409 File
    21410 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21411 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21412 moveSegmentationPuck 
    21413 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21414 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21415 File
    21416 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21417 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21418 return self.position.origin() 
    21419 ^^^^^^^^^^^^^ 
    21420 File
    21421 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21422 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21423 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21424 self.name) 
    21425 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21426 segmentation cursor" 
    21427  
    21428 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21429 segmentation cursor" 
    21430  
    21431 File
    21432 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21433 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21434 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21435 self.name) 
    21436  
    21437 See log for complete Python traceback. 
    21438  
    21439 Traceback (most recent call last): 
    21440 File
    21441 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21442 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21443 mouseMoveEvent 
    21444 self.moveSegmentationPuck(x, y, record_seg=False) 
    21445 File
    21446 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21447 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21448 moveSegmentationPuck 
    21449 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21450 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21451 File
    21452 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21453 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21454 return self.position.origin() 
    21455 ^^^^^^^^^^^^^ 
    21456 File
    21457 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21458 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21459 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21460 self.name) 
    21461 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21462 segmentation cursor" 
    21463  
    21464 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21465 segmentation cursor" 
    21466  
    21467 File
    21468 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21469 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21470 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21471 self.name) 
    21472  
    21473 See log for complete Python traceback. 
    21474  
    21475 Traceback (most recent call last): 
    21476 File
    21477 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21478 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21479 mouseMoveEvent 
    21480 self.moveSegmentationPuck(x, y, record_seg=False) 
    21481 File
    21482 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21483 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21484 moveSegmentationPuck 
    21485 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21486 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21487 File
    21488 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21489 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21490 return self.position.origin() 
    21491 ^^^^^^^^^^^^^ 
    21492 File
    21493 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21494 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21495 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21496 self.name) 
    21497 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21498 segmentation cursor" 
    21499  
    21500 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21501 segmentation cursor" 
    21502  
    21503 File
    21504 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21505 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21506 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21507 self.name) 
    21508  
    21509 See log for complete Python traceback. 
    21510  
    21511 Traceback (most recent call last): 
    21512 File
    21513 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21514 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21515 mouseMoveEvent 
    21516 self.moveSegmentationPuck(x, y, record_seg=False) 
    21517 File
    21518 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21519 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21520 moveSegmentationPuck 
    21521 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21522 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21523 File
    21524 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21525 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21526 return self.position.origin() 
    21527 ^^^^^^^^^^^^^ 
    21528 File
    21529 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21530 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21531 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21532 self.name) 
    21533 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21534 segmentation cursor" 
    21535  
    21536 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21537 segmentation cursor" 
    21538  
    21539 File
    21540 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21541 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21542 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21543 self.name) 
    21544  
    21545 See log for complete Python traceback. 
    21546  
    21547 Traceback (most recent call last): 
    21548 File
    21549 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21550 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21551 mouseMoveEvent 
    21552 self.moveSegmentationPuck(x, y, record_seg=False) 
    21553 File
    21554 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21555 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21556 moveSegmentationPuck 
    21557 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21558 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21559 File
    21560 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21561 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21562 return self.position.origin() 
    21563 ^^^^^^^^^^^^^ 
    21564 File
    21565 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21566 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21567 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21568 self.name) 
    21569 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21570 segmentation cursor" 
    21571  
    21572 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21573 segmentation cursor" 
    21574  
    21575 File
    21576 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21577 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21578 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21579 self.name) 
    21580  
    21581 See log for complete Python traceback. 
    21582  
    21583 Traceback (most recent call last): 
    21584 File
    21585 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21586 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21587 mouseMoveEvent 
    21588 self.moveSegmentationPuck(x, y, record_seg=False) 
    21589 File
    21590 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21591 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21592 moveSegmentationPuck 
    21593 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21594 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21595 File
    21596 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21597 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21598 return self.position.origin() 
    21599 ^^^^^^^^^^^^^ 
    21600 File
    21601 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21602 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21603 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21604 self.name) 
    21605 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21606 segmentation cursor" 
    21607  
    21608 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21609 segmentation cursor" 
    21610  
    21611 File
    21612 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21613 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21614 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21615 self.name) 
    21616  
    21617 See log for complete Python traceback. 
    21618  
    21619 Traceback (most recent call last): 
    21620 File
    21621 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21622 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21623 mouseMoveEvent 
    21624 self.moveSegmentationPuck(x, y, record_seg=False) 
    21625 File
    21626 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21627 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21628 moveSegmentationPuck 
    21629 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21630 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21631 File
    21632 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21633 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21634 return self.position.origin() 
    21635 ^^^^^^^^^^^^^ 
    21636 File
    21637 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21638 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21639 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21640 self.name) 
    21641 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21642 segmentation cursor" 
    21643  
    21644 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21645 segmentation cursor" 
    21646  
    21647 File
    21648 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21649 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21650 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21651 self.name) 
    21652  
    21653 See log for complete Python traceback. 
    21654  
    21655 Traceback (most recent call last): 
    21656 File
    21657 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21658 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21659 mouseMoveEvent 
    21660 self.moveSegmentationPuck(x, y, record_seg=False) 
    21661 File
    21662 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21663 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21664 moveSegmentationPuck 
    21665 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21666 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21667 File
    21668 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21669 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21670 return self.position.origin() 
    21671 ^^^^^^^^^^^^^ 
    21672 File
    21673 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21674 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21675 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21676 self.name) 
    21677 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21678 segmentation cursor" 
    21679  
    21680 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21681 segmentation cursor" 
    21682  
    21683 File
    21684 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21685 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21686 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21687 self.name) 
    21688  
    21689 See log for complete Python traceback. 
    21690  
    21691 Traceback (most recent call last): 
    21692 File
    21693 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21694 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21695 mouseMoveEvent 
    21696 self.moveSegmentationPuck(x, y, record_seg=False) 
    21697 File
    21698 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21699 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21700 moveSegmentationPuck 
    21701 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21702 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21703 File
    21704 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21705 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21706 return self.position.origin() 
    21707 ^^^^^^^^^^^^^ 
    21708 File
    21709 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21710 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21711 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21712 self.name) 
    21713 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21714 segmentation cursor" 
    21715  
    21716 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21717 segmentation cursor" 
    21718  
    21719 File
    21720 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21721 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21722 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21723 self.name) 
    21724  
    21725 See log for complete Python traceback. 
    21726  
    21727 Traceback (most recent call last): 
    21728 File
    21729 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21730 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    21731 self.leaveEvent() 
    21732 File
    21733 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21734 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    21735 self.segmentation_tool.make_puck_invisible(self.axis) 
    21736 File
    21737 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21738 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    21739 make_puck_invisible 
    21740 self.segmentation_cursors[axis].display = False 
    21741 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21742 File
    21743 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21744 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21745 super(Drawing, self).__setattr__(key, value) 
    21746 File
    21747 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21748 packages/chimerax/core/models.py", line 345, in _set_display 
    21749 Drawing.set_display(self, display) 
    21750 File
    21751 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21752 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21753 dp = self.display_positions 
    21754 ^^^^^^^^^^^^^^^^^^^^^^ 
    21755 File
    21756 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21757 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21758 dp = ones((len(self._positions),), bool) 
    21759 ^^^^^^^^^^^^^^^^^^^^ 
    21760 TypeError: object of type 'NoneType' has no len() 
    21761  
    21762 TypeError: object of type 'NoneType' has no len() 
    21763  
    21764 File
    21765 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21766 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21767 dp = ones((len(self._positions),), bool) 
    21768 ^^^^^^^^^^^^^^^^^^^^ 
    21769  
    21770 See log for complete Python traceback. 
    21771  
    21772 Traceback (most recent call last): 
    21773 File
    21774 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21775 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    21776 self.enterEvent() 
    21777 File
    21778 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21779 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    21780 self.segmentation_tool.make_puck_visible(self.axis) 
    21781 File
    21782 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21783 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    21784 make_puck_visible 
    21785 self.segmentation_cursors[axis].display = True 
    21786 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21787 File
    21788 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21789 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21790 super(Drawing, self).__setattr__(key, value) 
    21791 File
    21792 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21793 packages/chimerax/core/models.py", line 345, in _set_display 
    21794 Drawing.set_display(self, display) 
    21795 File
    21796 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21797 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21798 dp = self.display_positions 
    21799 ^^^^^^^^^^^^^^^^^^^^^^ 
    21800 File
    21801 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21802 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21803 dp = ones((len(self._positions),), bool) 
    21804 ^^^^^^^^^^^^^^^^^^^^ 
    21805 TypeError: object of type 'NoneType' has no len() 
    21806  
    21807 TypeError: object of type 'NoneType' has no len() 
    21808  
    21809 File
    21810 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21811 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21812 dp = ones((len(self._positions),), bool) 
    21813 ^^^^^^^^^^^^^^^^^^^^ 
    21814  
    21815 See log for complete Python traceback. 
    21816  
    21817 Traceback (most recent call last): 
    21818 File
    21819 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21820 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21821 mouseMoveEvent 
    21822 self.moveSegmentationPuck(x, y, record_seg=False) 
    21823 File
    21824 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21825 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21826 moveSegmentationPuck 
    21827 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21828 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21829 File
    21830 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21831 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21832 return self.position.origin() 
    21833 ^^^^^^^^^^^^^ 
    21834 File
    21835 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21836 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21837 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21838 self.name) 
    21839 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21840 segmentation cursor" 
    21841  
    21842 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21843 segmentation cursor" 
    21844  
    21845 File
    21846 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21847 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21848 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21849 self.name) 
    21850  
    21851 See log for complete Python traceback. 
    21852  
    21853 Traceback (most recent call last): 
    21854 File
    21855 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21856 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21857 mouseMoveEvent 
    21858 self.moveSegmentationPuck(x, y, record_seg=False) 
    21859 File
    21860 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21861 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21862 moveSegmentationPuck 
    21863 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21864 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21865 File
    21866 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21867 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21868 return self.position.origin() 
    21869 ^^^^^^^^^^^^^ 
    21870 File
    21871 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21872 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21873 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21874 self.name) 
    21875 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21876 segmentation cursor" 
    21877  
    21878 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21879 segmentation cursor" 
    21880  
    21881 File
    21882 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21883 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21884 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21885 self.name) 
    21886  
    21887 See log for complete Python traceback. 
    21888  
    21889 Traceback (most recent call last): 
    21890 File
    21891 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21892 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    21893 mouseMoveEvent 
    21894 self.moveSegmentationPuck(x, y, record_seg=False) 
    21895 File
    21896 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21897 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    21898 moveSegmentationPuck 
    21899 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    21900 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21901 File
    21902 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21903 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    21904 return self.position.origin() 
    21905 ^^^^^^^^^^^^^ 
    21906 File
    21907 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21908 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21909 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21910 self.name) 
    21911 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21912 segmentation cursor" 
    21913  
    21914 RuntimeError: Tried to get the position of deleted drawing "sagittal
    21915 segmentation cursor" 
    21916  
    21917 File
    21918 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21919 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    21920 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    21921 self.name) 
    21922  
    21923 See log for complete Python traceback. 
    21924  
    21925 Traceback (most recent call last): 
    21926 File
    21927 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21928 packages/chimerax/segmentations/ui/orthoplanes.py", line 1139, in
    21929 mouseStoppedMoving 
    21930 level = self.drawingParentVolume().data.matrix()[ 
    21931 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21932 AttributeError: 'NoneType' object has no attribute 'data' 
    21933  
    21934 Error in sys.excepthook: 
    21935 Traceback (most recent call last): 
    21936 File
    21937 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21938 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    21939 self.leaveEvent() 
    21940 File
    21941 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21942 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    21943 self.segmentation_tool.make_puck_invisible(self.axis) 
    21944 File
    21945 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21946 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    21947 make_puck_invisible 
    21948 self.segmentation_cursors[axis].display = False 
    21949 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    21950 File
    21951 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21952 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    21953 super(Drawing, self).__setattr__(key, value) 
    21954 File
    21955 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21956 packages/chimerax/core/models.py", line 345, in _set_display 
    21957 Drawing.set_display(self, display) 
    21958 File
    21959 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21960 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    21961 dp = self.display_positions 
    21962 ^^^^^^^^^^^^^^^^^^^^^^ 
    21963 File
    21964 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    21965 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    21966 dp = ones((len(self._positions),), bool) 
    21967 ^^^^^^^^^^^^^^^^^^^^ 
    21968 TypeError: object of type 'NoneType' has no len() 
    21969  
    21970 The above exception was the direct cause of the following exception: 
    21971  
    21972 SystemError:  returned a result with an exception
    21973 set 
    21974  
    21975 The above exception was the direct cause of the following exception: 
    21976  
    21977 SystemError:  returned a result with an exception
    21978 set 
    21979  
    21980 The above exception was the direct cause of the following exception: 
    21981  
    21982 SystemError:  returned a result with an exception
    21983 set 
    21984  
    21985 The above exception was the direct cause of the following exception: 
    21986  
    21987 SystemError:  returned a result with an exception
    21988 set 
    21989  
    21990 The above exception was the direct cause of the following exception: 
    21991  
    21992 SystemError:  returned a result with an exception
    21993 set 
    21994  
    21995 The above exception was the direct cause of the following exception: 
    21996  
    21997 SystemError:  returned a result with an exception
    21998 set 
    21999  
    22000 The above exception was the direct cause of the following exception: 
    22001  
    22002 SystemError:  returned a result with an
    22003 exception set 
    22004  
    22005 The above exception was the direct cause of the following exception: 
    22006  
    22007 SystemError:  returned a result with an
    22008 exception set 
    22009  
    22010 The above exception was the direct cause of the following exception: 
    22011  
    22012 SystemError:  returned a result with an
    22013 exception set 
    22014  
    22015 The above exception was the direct cause of the following exception: 
    22016  
    22017 SystemError:  returned a result with an
    22018 exception set 
    22019  
    22020 The above exception was the direct cause of the following exception: 
    22021  
    22022 SystemError:  returned a result with an
    22023 exception set 
    22024  
    22025 The above exception was the direct cause of the following exception: 
    22026  
    22027 SystemError:  returned a result with an
    22028 exception set 
    22029  
    22030 The above exception was the direct cause of the following exception: 
    22031  
    22032 Traceback (most recent call last): 
    22033 File
    22034 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22035 packages/chimerax/core/logger.py", line 334, in ehook 
    22036 self.session.ui.thread_safe( 
    22037 File
    22038 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22039 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    22040 func(*args, **kw) 
    22041 File
    22042 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22043 packages/chimerax/core/logger.py", line 516, in report_exception 
    22044 self.bug(err_msg.replace("\n", "
    22045 "), is_html=True) 
    22046 File
    22047 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22048 packages/chimerax/core/logger.py", line 394, in bug 
    22049 self._log( 
    22050 File
    22051 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22052 packages/chimerax/core/logger.py", line 572, in _log 
    22053 if log.log(*args): 
    22054 ^^^^^^^^^^^^^^ 
    22055 File
    22056 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22057 packages/chimerax/log/tool.py", line 342, in log 
    22058 self.session.ui.thread_safe(f) 
    22059 File
    22060 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22061 packages/chimerax/ui/gui.py", line 423, in thread_safe 
    22062 func(*args, **kw) 
    22063 File
    22064 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22065 packages/chimerax/log/tool.py", line 341, in   
    22066 f = lambda self=self, msg=dlg_msg: self.show_error_message(msg, bug=bug) 
    22067 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22068 File
    22069 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22070 packages/chimerax/log/tool.py", line 262, in show_error_message 
    22071 ed.showMessage(msg) 
    22072 SystemError:  returned a result with an exception set 
    22073  
    22074 Original exception was: 
    22075 Traceback (most recent call last): 
    22076 File
    22077 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22078 packages/chimerax/segmentations/ui/orthoplanes.py", line 1139, in
    22079 mouseStoppedMoving 
    22080 level = self.drawingParentVolume().data.matrix()[ 
    22081 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22082 AttributeError: 'NoneType' object has no attribute 'data' 
    22083 Traceback (most recent call last): 
    22084 File
    22085 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22086 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    22087 self.enterEvent() 
    22088 File
    22089 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22090 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    22091 self.segmentation_tool.make_puck_visible(self.axis) 
    22092 File
    22093 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22094 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    22095 make_puck_visible 
    22096 self.segmentation_cursors[axis].display = True 
    22097 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22098 File
    22099 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22100 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    22101 super(Drawing, self).__setattr__(key, value) 
    22102 File
    22103 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22104 packages/chimerax/core/models.py", line 345, in _set_display 
    22105 Drawing.set_display(self, display) 
    22106 File
    22107 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22108 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    22109 dp = self.display_positions 
    22110 ^^^^^^^^^^^^^^^^^^^^^^ 
    22111 File
    22112 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22113 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22114 dp = ones((len(self._positions),), bool) 
    22115 ^^^^^^^^^^^^^^^^^^^^ 
    22116 TypeError: object of type 'NoneType' has no len() 
    22117  
    22118 TypeError: object of type 'NoneType' has no len() 
    22119  
    22120 File
    22121 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22122 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    22123 dp = ones((len(self._positions),), bool) 
    22124 ^^^^^^^^^^^^^^^^^^^^ 
    22125  
    22126 See log for complete Python traceback. 
    22127  
    22128 Traceback (most recent call last): 
    22129 File
    22130 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22131 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22132 mouseMoveEvent 
    22133 self.moveSegmentationPuck(x, y, record_seg=False) 
    22134 File
    22135 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22136 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22137 moveSegmentationPuck 
    22138 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22139 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22140 File
    22141 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22142 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22143 return self.position.origin() 
    22144 ^^^^^^^^^^^^^ 
    22145 File
    22146 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22147 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22148 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22149 self.name) 
    22150 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22151 segmentation cursor" 
    22152  
    22153 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22154 segmentation cursor" 
    22155  
    22156 File
    22157 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22158 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22159 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22160 self.name) 
    22161  
    22162 See log for complete Python traceback. 
    22163  
    22164 Traceback (most recent call last): 
    22165 File
    22166 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22167 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22168 mouseMoveEvent 
    22169 self.moveSegmentationPuck(x, y, record_seg=False) 
    22170 File
    22171 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22172 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22173 moveSegmentationPuck 
    22174 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22175 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22176 File
    22177 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22178 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22179 return self.position.origin() 
    22180 ^^^^^^^^^^^^^ 
    22181 File
    22182 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22183 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22184 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22185 self.name) 
    22186 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22187 segmentation cursor" 
    22188  
    22189 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22190 segmentation cursor" 
    22191  
    22192 File
    22193 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22194 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22195 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22196 self.name) 
    22197  
    22198 See log for complete Python traceback. 
    22199  
    22200 Traceback (most recent call last): 
    22201 File
    22202 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22203 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22204 mouseMoveEvent 
    22205 self.moveSegmentationPuck(x, y, record_seg=False) 
    22206 File
    22207 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22208 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22209 moveSegmentationPuck 
    22210 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22211 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22212 File
    22213 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22214 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22215 return self.position.origin() 
    22216 ^^^^^^^^^^^^^ 
    22217 File
    22218 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22219 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22220 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22221 self.name) 
    22222 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22223 segmentation cursor" 
    22224  
    22225 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22226 segmentation cursor" 
    22227  
    22228 File
    22229 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22230 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22231 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22232 self.name) 
    22233  
    22234 See log for complete Python traceback. 
    22235  
    22236 Traceback (most recent call last): 
    22237 File
    22238 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22239 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22240 mouseMoveEvent 
    22241 self.moveSegmentationPuck(x, y, record_seg=False) 
    22242 File
    22243 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22244 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22245 moveSegmentationPuck 
    22246 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22247 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22248 File
    22249 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22250 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22251 return self.position.origin() 
    22252 ^^^^^^^^^^^^^ 
    22253 File
    22254 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22255 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22256 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22257 self.name) 
    22258 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22259 segmentation cursor" 
    22260  
    22261 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22262 segmentation cursor" 
    22263  
    22264 File
    22265 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22266 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22267 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22268 self.name) 
    22269  
    22270 See log for complete Python traceback. 
    22271  
    22272 Traceback (most recent call last): 
    22273 File
    22274 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22275 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22276 mouseMoveEvent 
    22277 self.moveSegmentationPuck(x, y, record_seg=False) 
    22278 File
    22279 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22280 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22281 moveSegmentationPuck 
    22282 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22283 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22284 File
    22285 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22286 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22287 return self.position.origin() 
    22288 ^^^^^^^^^^^^^ 
    22289 File
    22290 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22291 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22292 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22293 self.name) 
    22294 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22295 segmentation cursor" 
    22296  
    22297 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22298 segmentation cursor" 
    22299  
    22300 File
    22301 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22302 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22303 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22304 self.name) 
    22305  
    22306 See log for complete Python traceback. 
    22307  
    22308 Traceback (most recent call last): 
    22309 File
    22310 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22311 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22312 mouseMoveEvent 
    22313 self.moveSegmentationPuck(x, y, record_seg=False) 
    22314 File
    22315 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22316 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22317 moveSegmentationPuck 
    22318 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22319 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22320 File
    22321 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22322 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22323 return self.position.origin() 
    22324 ^^^^^^^^^^^^^ 
    22325 File
    22326 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22327 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22328 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22329 self.name) 
    22330 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22331 segmentation cursor" 
    22332  
    22333 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22334 segmentation cursor" 
    22335  
    22336 File
    22337 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22338 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22339 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22340 self.name) 
    22341  
    22342 See log for complete Python traceback. 
    22343  
    22344 Traceback (most recent call last): 
    22345 File
    22346 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22347 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22348 mouseMoveEvent 
    22349 self.moveSegmentationPuck(x, y, record_seg=False) 
    22350 File
    22351 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22352 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22353 moveSegmentationPuck 
    22354 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22356 File
    22357 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22358 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22359 return self.position.origin() 
    22360 ^^^^^^^^^^^^^ 
    22361 File
    22362 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22363 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22364 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22365 self.name) 
    22366 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22367 segmentation cursor" 
    22368  
    22369 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22370 segmentation cursor" 
    22371  
    22372 File
    22373 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22374 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22375 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22376 self.name) 
    22377  
    22378 See log for complete Python traceback. 
    22379  
    22380 Traceback (most recent call last): 
    22381 File
    22382 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22383 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22384 mouseMoveEvent 
    22385 self.moveSegmentationPuck(x, y, record_seg=False) 
    22386 File
    22387 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22388 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22389 moveSegmentationPuck 
    22390 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22391 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22392 File
    22393 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22394 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22395 return self.position.origin() 
    22396 ^^^^^^^^^^^^^ 
    22397 File
    22398 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22399 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22400 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22401 self.name) 
    22402 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22403 segmentation cursor" 
    22404  
    22405 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22406 segmentation cursor" 
    22407  
    22408 File
    22409 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22410 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22411 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22412 self.name) 
    22413  
    22414 See log for complete Python traceback. 
    22415  
    22416 Traceback (most recent call last): 
    22417 File
    22418 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22419 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22420 mouseMoveEvent 
    22421 self.moveSegmentationPuck(x, y, record_seg=False) 
    22422 File
    22423 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22424 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22425 moveSegmentationPuck 
    22426 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22427 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22428 File
    22429 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22430 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22431 return self.position.origin() 
    22432 ^^^^^^^^^^^^^ 
    22433 File
    22434 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22435 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22436 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22437 self.name) 
    22438 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22439 segmentation cursor" 
    22440  
    22441 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22442 segmentation cursor" 
    22443  
    22444 File
    22445 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22446 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22447 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22448 self.name) 
    22449  
    22450 See log for complete Python traceback. 
    22451  
    22452 Traceback (most recent call last): 
    22453 File
    22454 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22455 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22456 mouseMoveEvent 
    22457 self.moveSegmentationPuck(x, y, record_seg=False) 
    22458 File
    22459 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22460 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22461 moveSegmentationPuck 
    22462 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22463 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22464 File
    22465 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22466 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22467 return self.position.origin() 
    22468 ^^^^^^^^^^^^^ 
    22469 File
    22470 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22471 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22472 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22473 self.name) 
    22474 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22475 segmentation cursor" 
    22476  
    22477 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22478 segmentation cursor" 
    22479  
    22480 File
    22481 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22482 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22483 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22484 self.name) 
    22485  
    22486 See log for complete Python traceback. 
    22487  
    22488 Traceback (most recent call last): 
    22489 File
    22490 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22491 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22492 mouseMoveEvent 
    22493 self.moveSegmentationPuck(x, y, record_seg=False) 
    22494 File
    22495 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22496 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22497 moveSegmentationPuck 
    22498 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22499 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22500 File
    22501 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22502 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22503 return self.position.origin() 
    22504 ^^^^^^^^^^^^^ 
    22505 File
    22506 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22507 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22508 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22509 self.name) 
    22510 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22511 segmentation cursor" 
    22512  
    22513 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22514 segmentation cursor" 
    22515  
    22516 File
    22517 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22518 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22519 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22520 self.name) 
    22521  
    22522 See log for complete Python traceback. 
    22523  
    22524 Traceback (most recent call last): 
    22525 File
    22526 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22527 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22528 mouseMoveEvent 
    22529 self.moveSegmentationPuck(x, y, record_seg=False) 
    22530 File
    22531 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22532 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22533 moveSegmentationPuck 
    22534 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22535 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22536 File
    22537 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22538 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22539 return self.position.origin() 
    22540 ^^^^^^^^^^^^^ 
    22541 File
    22542 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22543 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22544 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22545 self.name) 
    22546 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22547 segmentation cursor" 
    22548  
    22549 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22550 segmentation cursor" 
    22551  
    22552 File
    22553 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22554 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22555 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22556 self.name) 
    22557  
    22558 See log for complete Python traceback. 
    22559  
    22560 Traceback (most recent call last): 
    22561 File
    22562 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22563 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22564 mouseMoveEvent 
    22565 self.moveSegmentationPuck(x, y, record_seg=False) 
    22566 File
    22567 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22568 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22569 moveSegmentationPuck 
    22570 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22571 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22572 File
    22573 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22574 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22575 return self.position.origin() 
    22576 ^^^^^^^^^^^^^ 
    22577 File
    22578 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22579 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22580 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22581 self.name) 
    22582 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22583 segmentation cursor" 
    22584  
    22585 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22586 segmentation cursor" 
    22587  
    22588 File
    22589 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22590 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22591 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22592 self.name) 
    22593  
    22594 See log for complete Python traceback. 
    22595  
    22596 Traceback (most recent call last): 
    22597 File
    22598 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22599 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22600 mouseMoveEvent 
    22601 self.moveSegmentationPuck(x, y, record_seg=False) 
    22602 File
    22603 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22604 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22605 moveSegmentationPuck 
    22606 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22607 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22608 File
    22609 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22610 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22611 return self.position.origin() 
    22612 ^^^^^^^^^^^^^ 
    22613 File
    22614 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22615 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22616 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22617 self.name) 
    22618 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22619 segmentation cursor" 
    22620  
    22621 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22622 segmentation cursor" 
    22623  
    22624 File
    22625 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22626 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22627 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22628 self.name) 
    22629  
    22630 See log for complete Python traceback. 
    22631  
    22632 Traceback (most recent call last): 
    22633 File
    22634 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22635 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22636 mouseMoveEvent 
    22637 self.moveSegmentationPuck(x, y, record_seg=False) 
    22638 File
    22639 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22640 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22641 moveSegmentationPuck 
    22642 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22643 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22644 File
    22645 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22646 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22647 return self.position.origin() 
    22648 ^^^^^^^^^^^^^ 
    22649 File
    22650 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22651 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22652 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22653 self.name) 
    22654 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22655 segmentation cursor" 
    22656  
    22657 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22658 segmentation cursor" 
    22659  
    22660 File
    22661 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22662 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22663 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22664 self.name) 
    22665  
    22666 See log for complete Python traceback. 
    22667  
    22668 Traceback (most recent call last): 
    22669 File
    22670 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22671 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22672 mouseMoveEvent 
    22673 self.moveSegmentationPuck(x, y, record_seg=False) 
    22674 File
    22675 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22676 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22677 moveSegmentationPuck 
    22678 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22679 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22680 File
    22681 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22682 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22683 return self.position.origin() 
    22684 ^^^^^^^^^^^^^ 
    22685 File
    22686 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22687 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22688 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22689 self.name) 
    22690 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22691 segmentation cursor" 
    22692  
    22693 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22694 segmentation cursor" 
    22695  
    22696 File
    22697 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22698 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22699 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22700 self.name) 
    22701  
    22702 See log for complete Python traceback. 
    22703  
    22704 Traceback (most recent call last): 
    22705 File
    22706 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22707 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22708 mouseMoveEvent 
    22709 self.moveSegmentationPuck(x, y, record_seg=False) 
    22710 File
    22711 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22712 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22713 moveSegmentationPuck 
    22714 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22715 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22716 File
    22717 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22718 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22719 return self.position.origin() 
    22720 ^^^^^^^^^^^^^ 
    22721 File
    22722 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22723 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22724 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22725 self.name) 
    22726 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22727 segmentation cursor" 
    22728  
    22729 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22730 segmentation cursor" 
    22731  
    22732 File
    22733 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22734 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22735 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22736 self.name) 
    22737  
    22738 See log for complete Python traceback. 
    22739  
    22740 Traceback (most recent call last): 
    22741 File
    22742 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22743 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22744 mouseMoveEvent 
    22745 self.moveSegmentationPuck(x, y, record_seg=False) 
    22746 File
    22747 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22748 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22749 moveSegmentationPuck 
    22750 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22751 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22752 File
    22753 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22754 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22755 return self.position.origin() 
    22756 ^^^^^^^^^^^^^ 
    22757 File
    22758 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22759 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22760 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22761 self.name) 
    22762 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22763 segmentation cursor" 
    22764  
    22765 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22766 segmentation cursor" 
    22767  
    22768 File
    22769 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22770 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22771 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22772 self.name) 
    22773  
    22774 See log for complete Python traceback. 
    22775  
    22776 Traceback (most recent call last): 
    22777 File
    22778 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22779 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22780 mouseMoveEvent 
    22781 self.moveSegmentationPuck(x, y, record_seg=False) 
    22782 File
    22783 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22784 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22785 moveSegmentationPuck 
    22786 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22787 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22788 File
    22789 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22790 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22791 return self.position.origin() 
    22792 ^^^^^^^^^^^^^ 
    22793 File
    22794 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22795 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22796 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22797 self.name) 
    22798 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22799 segmentation cursor" 
    22800  
    22801 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22802 segmentation cursor" 
    22803  
    22804 File
    22805 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22806 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22807 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22808 self.name) 
    22809  
    22810 See log for complete Python traceback. 
    22811  
    22812 Traceback (most recent call last): 
    22813 File
    22814 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22815 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22816 mouseMoveEvent 
    22817 self.moveSegmentationPuck(x, y, record_seg=False) 
    22818 File
    22819 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22820 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22821 moveSegmentationPuck 
    22822 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22823 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22824 File
    22825 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22826 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22827 return self.position.origin() 
    22828 ^^^^^^^^^^^^^ 
    22829 File
    22830 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22831 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22832 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22833 self.name) 
    22834 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22835 segmentation cursor" 
    22836  
    22837 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22838 segmentation cursor" 
    22839  
    22840 File
    22841 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22842 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22843 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22844 self.name) 
    22845  
    22846 See log for complete Python traceback. 
    22847  
    22848 Traceback (most recent call last): 
    22849 File
    22850 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22851 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22852 mouseMoveEvent 
    22853 self.moveSegmentationPuck(x, y, record_seg=False) 
    22854 File
    22855 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22856 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22857 moveSegmentationPuck 
    22858 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22859 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22860 File
    22861 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22862 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22863 return self.position.origin() 
    22864 ^^^^^^^^^^^^^ 
    22865 File
    22866 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22867 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22868 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22869 self.name) 
    22870 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22871 segmentation cursor" 
    22872  
    22873 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22874 segmentation cursor" 
    22875  
    22876 File
    22877 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22878 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22879 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22880 self.name) 
    22881  
    22882 See log for complete Python traceback. 
    22883  
    22884 Traceback (most recent call last): 
    22885 File
    22886 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22887 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22888 mouseMoveEvent 
    22889 self.moveSegmentationPuck(x, y, record_seg=False) 
    22890 File
    22891 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22892 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22893 moveSegmentationPuck 
    22894 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22895 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22896 File
    22897 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22898 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22899 return self.position.origin() 
    22900 ^^^^^^^^^^^^^ 
    22901 File
    22902 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22903 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22904 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22905 self.name) 
    22906 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22907 segmentation cursor" 
    22908  
    22909 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22910 segmentation cursor" 
    22911  
    22912 File
    22913 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22914 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22915 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22916 self.name) 
    22917  
    22918 See log for complete Python traceback. 
    22919  
    22920 Traceback (most recent call last): 
    22921 File
    22922 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22923 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22924 mouseMoveEvent 
    22925 self.moveSegmentationPuck(x, y, record_seg=False) 
    22926 File
    22927 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22928 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22929 moveSegmentationPuck 
    22930 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22931 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22932 File
    22933 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22934 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22935 return self.position.origin() 
    22936 ^^^^^^^^^^^^^ 
    22937 File
    22938 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22939 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22940 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22941 self.name) 
    22942 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22943 segmentation cursor" 
    22944  
    22945 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22946 segmentation cursor" 
    22947  
    22948 File
    22949 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22950 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22951 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22952 self.name) 
    22953  
    22954 See log for complete Python traceback. 
    22955  
    22956 Traceback (most recent call last): 
    22957 File
    22958 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22959 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22960 mouseMoveEvent 
    22961 self.moveSegmentationPuck(x, y, record_seg=False) 
    22962 File
    22963 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22964 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    22965 moveSegmentationPuck 
    22966 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    22967 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    22968 File
    22969 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22970 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    22971 return self.position.origin() 
    22972 ^^^^^^^^^^^^^ 
    22973 File
    22974 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22975 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22976 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22977 self.name) 
    22978 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22979 segmentation cursor" 
    22980  
    22981 RuntimeError: Tried to get the position of deleted drawing "sagittal
    22982 segmentation cursor" 
    22983  
    22984 File
    22985 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22986 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    22987 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    22988 self.name) 
    22989  
    22990 See log for complete Python traceback. 
    22991  
    22992 Traceback (most recent call last): 
    22993 File
    22994 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    22995 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    22996 mouseMoveEvent 
    22997 self.moveSegmentationPuck(x, y, record_seg=False) 
    22998 File
    22999 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23000 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23001 moveSegmentationPuck 
    23002 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23003 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23004 File
    23005 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23006 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23007 return self.position.origin() 
    23008 ^^^^^^^^^^^^^ 
    23009 File
    23010 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23011 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23012 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23013 self.name) 
    23014 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23015 segmentation cursor" 
    23016  
    23017 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23018 segmentation cursor" 
    23019  
    23020 File
    23021 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23022 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23023 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23024 self.name) 
    23025  
    23026 See log for complete Python traceback. 
    23027  
    23028 Traceback (most recent call last): 
    23029 File
    23030 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23031 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23032 mouseMoveEvent 
    23033 self.moveSegmentationPuck(x, y, record_seg=False) 
    23034 File
    23035 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23036 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23037 moveSegmentationPuck 
    23038 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23039 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23040 File
    23041 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23042 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23043 return self.position.origin() 
    23044 ^^^^^^^^^^^^^ 
    23045 File
    23046 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23047 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23048 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23049 self.name) 
    23050 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23051 segmentation cursor" 
    23052  
    23053 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23054 segmentation cursor" 
    23055  
    23056 File
    23057 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23058 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23059 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23060 self.name) 
    23061  
    23062 See log for complete Python traceback. 
    23063  
    23064 Traceback (most recent call last): 
    23065 File
    23066 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23067 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23068 mouseMoveEvent 
    23069 self.moveSegmentationPuck(x, y, record_seg=False) 
    23070 File
    23071 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23072 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23073 moveSegmentationPuck 
    23074 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23075 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23076 File
    23077 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23078 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23079 return self.position.origin() 
    23080 ^^^^^^^^^^^^^ 
    23081 File
    23082 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23083 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23084 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23085 self.name) 
    23086 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23087 segmentation cursor" 
    23088  
    23089 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23090 segmentation cursor" 
    23091  
    23092 File
    23093 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23094 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23095 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23096 self.name) 
    23097  
    23098 See log for complete Python traceback. 
    23099  
    23100 Traceback (most recent call last): 
    23101 File
    23102 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23103 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23104 mouseMoveEvent 
    23105 self.moveSegmentationPuck(x, y, record_seg=False) 
    23106 File
    23107 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23108 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23109 moveSegmentationPuck 
    23110 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23111 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23112 File
    23113 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23114 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23115 return self.position.origin() 
    23116 ^^^^^^^^^^^^^ 
    23117 File
    23118 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23119 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23120 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23121 self.name) 
    23122 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23123 segmentation cursor" 
    23124  
    23125 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23126 segmentation cursor" 
    23127  
    23128 File
    23129 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23130 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23131 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23132 self.name) 
    23133  
    23134 See log for complete Python traceback. 
    23135  
    23136 Traceback (most recent call last): 
    23137 File
    23138 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23139 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23140 mouseMoveEvent 
    23141 self.moveSegmentationPuck(x, y, record_seg=False) 
    23142 File
    23143 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23144 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23145 moveSegmentationPuck 
    23146 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23147 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23148 File
    23149 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23150 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23151 return self.position.origin() 
    23152 ^^^^^^^^^^^^^ 
    23153 File
    23154 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23155 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23156 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23157 self.name) 
    23158 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23159 segmentation cursor" 
    23160  
    23161 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23162 segmentation cursor" 
    23163  
    23164 File
    23165 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23166 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23167 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23168 self.name) 
    23169  
    23170 See log for complete Python traceback. 
    23171  
    23172 Traceback (most recent call last): 
    23173 File
    23174 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23175 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23176 mouseMoveEvent 
    23177 self.moveSegmentationPuck(x, y, record_seg=False) 
    23178 File
    23179 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23180 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23181 moveSegmentationPuck 
    23182 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23183 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23184 File
    23185 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23186 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23187 return self.position.origin() 
    23188 ^^^^^^^^^^^^^ 
    23189 File
    23190 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23191 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23192 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23193 self.name) 
    23194 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23195 segmentation cursor" 
    23196  
    23197 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23198 segmentation cursor" 
    23199  
    23200 File
    23201 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23202 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23203 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23204 self.name) 
    23205  
    23206 See log for complete Python traceback. 
    23207  
    23208 Traceback (most recent call last): 
    23209 File
    23210 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23211 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23212 mouseMoveEvent 
    23213 self.moveSegmentationPuck(x, y, record_seg=False) 
    23214 File
    23215 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23216 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23217 moveSegmentationPuck 
    23218 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23219 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23220 File
    23221 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23222 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23223 return self.position.origin() 
    23224 ^^^^^^^^^^^^^ 
    23225 File
    23226 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23227 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23228 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23229 self.name) 
    23230 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23231 segmentation cursor" 
    23232  
    23233 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23234 segmentation cursor" 
    23235  
    23236 File
    23237 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23238 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23239 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23240 self.name) 
    23241  
    23242 See log for complete Python traceback. 
    23243  
    23244 Traceback (most recent call last): 
    23245 File
    23246 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23247 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23248 mouseMoveEvent 
    23249 self.moveSegmentationPuck(x, y, record_seg=False) 
    23250 File
    23251 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23252 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23253 moveSegmentationPuck 
    23254 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23255 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23256 File
    23257 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23258 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23259 return self.position.origin() 
    23260 ^^^^^^^^^^^^^ 
    23261 File
    23262 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23263 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23264 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23265 self.name) 
    23266 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23267 segmentation cursor" 
    23268  
    23269 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23270 segmentation cursor" 
    23271  
    23272 File
    23273 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23274 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23275 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23276 self.name) 
    23277  
    23278 See log for complete Python traceback. 
    23279  
    23280 Traceback (most recent call last): 
    23281 File
    23282 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23283 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23284 mouseMoveEvent 
    23285 self.moveSegmentationPuck(x, y, record_seg=False) 
    23286 File
    23287 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23288 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23289 moveSegmentationPuck 
    23290 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23291 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23292 File
    23293 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23294 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23295 return self.position.origin() 
    23296 ^^^^^^^^^^^^^ 
    23297 File
    23298 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23299 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23300 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23301 self.name) 
    23302 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23303 segmentation cursor" 
    23304  
    23305 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23306 segmentation cursor" 
    23307  
    23308 File
    23309 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23310 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23311 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23312 self.name) 
    23313  
    23314 See log for complete Python traceback. 
    23315  
    23316 Traceback (most recent call last): 
    23317 File
    23318 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23319 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23320 mouseMoveEvent 
    23321 self.moveSegmentationPuck(x, y, record_seg=False) 
    23322 File
    23323 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23324 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23325 moveSegmentationPuck 
    23326 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23327 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23328 File
    23329 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23330 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23331 return self.position.origin() 
    23332 ^^^^^^^^^^^^^ 
    23333 File
    23334 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23335 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23336 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23337 self.name) 
    23338 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23339 segmentation cursor" 
    23340  
    23341 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23342 segmentation cursor" 
    23343  
    23344 File
    23345 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23346 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23347 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23348 self.name) 
    23349  
    23350 See log for complete Python traceback. 
    23351  
    23352 Traceback (most recent call last): 
    23353 File
    23354 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23355 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23356 mouseMoveEvent 
    23357 self.moveSegmentationPuck(x, y, record_seg=False) 
    23358 File
    23359 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23360 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23361 moveSegmentationPuck 
    23362 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23363 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23364 File
    23365 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23366 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23367 return self.position.origin() 
    23368 ^^^^^^^^^^^^^ 
    23369 File
    23370 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23371 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23372 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23373 self.name) 
    23374 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23375 segmentation cursor" 
    23376  
    23377 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23378 segmentation cursor" 
    23379  
    23380 File
    23381 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23382 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23383 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23384 self.name) 
    23385  
    23386 See log for complete Python traceback. 
    23387  
    23388 Traceback (most recent call last): 
    23389 File
    23390 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23391 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23392 mouseMoveEvent 
    23393 self.moveSegmentationPuck(x, y, record_seg=False) 
    23394 File
    23395 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23396 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23397 moveSegmentationPuck 
    23398 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23399 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23400 File
    23401 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23402 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23403 return self.position.origin() 
    23404 ^^^^^^^^^^^^^ 
    23405 File
    23406 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23407 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23408 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23409 self.name) 
    23410 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23411 segmentation cursor" 
    23412  
    23413 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23414 segmentation cursor" 
    23415  
    23416 File
    23417 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23418 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23419 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23420 self.name) 
    23421  
    23422 See log for complete Python traceback. 
    23423  
    23424 Traceback (most recent call last): 
    23425 File
    23426 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23427 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23428 mouseMoveEvent 
    23429 self.moveSegmentationPuck(x, y, record_seg=False) 
    23430 File
    23431 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23432 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23433 moveSegmentationPuck 
    23434 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23435 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23436 File
    23437 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23438 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23439 return self.position.origin() 
    23440 ^^^^^^^^^^^^^ 
    23441 File
    23442 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23443 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23444 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23445 self.name) 
    23446 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23447 segmentation cursor" 
    23448  
    23449 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23450 segmentation cursor" 
    23451  
    23452 File
    23453 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23454 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23455 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23456 self.name) 
    23457  
    23458 See log for complete Python traceback. 
    23459  
    23460 Traceback (most recent call last): 
    23461 File
    23462 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23463 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23464 mouseMoveEvent 
    23465 self.moveSegmentationPuck(x, y, record_seg=False) 
    23466 File
    23467 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23468 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23469 moveSegmentationPuck 
    23470 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23471 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23472 File
    23473 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23474 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23475 return self.position.origin() 
    23476 ^^^^^^^^^^^^^ 
    23477 File
    23478 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23479 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23480 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23481 self.name) 
    23482 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23483 segmentation cursor" 
    23484  
    23485 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23486 segmentation cursor" 
    23487  
    23488 File
    23489 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23490 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23491 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23492 self.name) 
    23493  
    23494 See log for complete Python traceback. 
    23495  
    23496 Traceback (most recent call last): 
    23497 File
    23498 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23499 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23500 mouseMoveEvent 
    23501 self.moveSegmentationPuck(x, y, record_seg=False) 
    23502 File
    23503 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23504 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23505 moveSegmentationPuck 
    23506 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23507 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23508 File
    23509 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23510 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23511 return self.position.origin() 
    23512 ^^^^^^^^^^^^^ 
    23513 File
    23514 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23515 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23516 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23517 self.name) 
    23518 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23519 segmentation cursor" 
    23520  
    23521 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23522 segmentation cursor" 
    23523  
    23524 File
    23525 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23526 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23527 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23528 self.name) 
    23529  
    23530 See log for complete Python traceback. 
    23531  
    23532 Traceback (most recent call last): 
    23533 File
    23534 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23535 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23536 mouseMoveEvent 
    23537 self.moveSegmentationPuck(x, y, record_seg=False) 
    23538 File
    23539 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23540 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23541 moveSegmentationPuck 
    23542 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23543 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23544 File
    23545 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23546 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23547 return self.position.origin() 
    23548 ^^^^^^^^^^^^^ 
    23549 File
    23550 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23551 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23552 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23553 self.name) 
    23554 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23555 segmentation cursor" 
    23556  
    23557 RuntimeError: Tried to get the position of deleted drawing "sagittal
    23558 segmentation cursor" 
    23559  
    23560 File
    23561 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23562 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23563 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23564 self.name) 
    23565  
    23566 See log for complete Python traceback. 
    23567  
    23568 Traceback (most recent call last): 
    23569 File
    23570 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23571 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    23572 self.leaveEvent() 
    23573 File
    23574 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23575 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    23576 self.segmentation_tool.make_puck_invisible(self.axis) 
    23577 File
    23578 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23579 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    23580 make_puck_invisible 
    23581 self.segmentation_cursors[axis].display = False 
    23582 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23583 File
    23584 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23585 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    23586 super(Drawing, self).__setattr__(key, value) 
    23587 File
    23588 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23589 packages/chimerax/core/models.py", line 345, in _set_display 
    23590 Drawing.set_display(self, display) 
    23591 File
    23592 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23593 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    23594 dp = self.display_positions 
    23595 ^^^^^^^^^^^^^^^^^^^^^^ 
    23596 File
    23597 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23598 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    23599 dp = ones((len(self._positions),), bool) 
    23600 ^^^^^^^^^^^^^^^^^^^^ 
    23601 TypeError: object of type 'NoneType' has no len() 
    23602  
    23603 TypeError: object of type 'NoneType' has no len() 
    23604  
    23605 File
    23606 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23607 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    23608 dp = ones((len(self._positions),), bool) 
    23609 ^^^^^^^^^^^^^^^^^^^^ 
    23610  
    23611 See log for complete Python traceback. 
    23612  
    23613 Traceback (most recent call last): 
    23614 File
    23615 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23616 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    23617 self.enterEvent() 
    23618 File
    23619 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23620 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    23621 self.segmentation_tool.make_puck_visible(self.axis) 
    23622 File
    23623 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23624 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    23625 make_puck_visible 
    23626 self.segmentation_cursors[axis].display = True 
    23627 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23628 File
    23629 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23630 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    23631 super(Drawing, self).__setattr__(key, value) 
    23632 File
    23633 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23634 packages/chimerax/core/models.py", line 345, in _set_display 
    23635 Drawing.set_display(self, display) 
    23636 File
    23637 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23638 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    23639 dp = self.display_positions 
    23640 ^^^^^^^^^^^^^^^^^^^^^^ 
    23641 File
    23642 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23643 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    23644 dp = ones((len(self._positions),), bool) 
    23645 ^^^^^^^^^^^^^^^^^^^^ 
    23646 TypeError: object of type 'NoneType' has no len() 
    23647  
    23648 TypeError: object of type 'NoneType' has no len() 
    23649  
    23650 File
    23651 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23652 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    23653 dp = ones((len(self._positions),), bool) 
    23654 ^^^^^^^^^^^^^^^^^^^^ 
    23655  
    23656 See log for complete Python traceback. 
    23657  
    23658 Traceback (most recent call last): 
    23659 File
    23660 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23661 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23662 mouseMoveEvent 
    23663 self.moveSegmentationPuck(x, y, record_seg=False) 
    23664 File
    23665 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23666 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23667 moveSegmentationPuck 
    23668 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23669 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23670 File
    23671 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23672 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23673 return self.position.origin() 
    23674 ^^^^^^^^^^^^^ 
    23675 File
    23676 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23677 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23678 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23679 self.name) 
    23680 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23681 cursor" 
    23682  
    23683 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23684 cursor" 
    23685  
    23686 File
    23687 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23688 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23689 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23690 self.name) 
    23691  
    23692 See log for complete Python traceback. 
    23693  
    23694 Traceback (most recent call last): 
    23695 File
    23696 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23697 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23698 mouseMoveEvent 
    23699 self.moveSegmentationPuck(x, y, record_seg=False) 
    23700 File
    23701 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23702 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23703 moveSegmentationPuck 
    23704 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23705 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23706 File
    23707 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23708 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23709 return self.position.origin() 
    23710 ^^^^^^^^^^^^^ 
    23711 File
    23712 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23713 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23714 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23715 self.name) 
    23716 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23717 cursor" 
    23718  
    23719 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23720 cursor" 
    23721  
    23722 File
    23723 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23724 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23725 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23726 self.name) 
    23727  
    23728 See log for complete Python traceback. 
    23729  
    23730 Traceback (most recent call last): 
    23731 File
    23732 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23733 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23734 mouseMoveEvent 
    23735 self.moveSegmentationPuck(x, y, record_seg=False) 
    23736 File
    23737 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23738 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23739 moveSegmentationPuck 
    23740 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23741 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23742 File
    23743 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23744 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23745 return self.position.origin() 
    23746 ^^^^^^^^^^^^^ 
    23747 File
    23748 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23749 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23750 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23751 self.name) 
    23752 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23753 cursor" 
    23754  
    23755 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23756 cursor" 
    23757  
    23758 File
    23759 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23760 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23761 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23762 self.name) 
    23763  
    23764 See log for complete Python traceback. 
    23765  
    23766 Traceback (most recent call last): 
    23767 File
    23768 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23769 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23770 mouseMoveEvent 
    23771 self.moveSegmentationPuck(x, y, record_seg=False) 
    23772 File
    23773 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23774 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23775 moveSegmentationPuck 
    23776 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23777 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23778 File
    23779 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23780 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23781 return self.position.origin() 
    23782 ^^^^^^^^^^^^^ 
    23783 File
    23784 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23785 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23786 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23787 self.name) 
    23788 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23789 cursor" 
    23790  
    23791 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23792 cursor" 
    23793  
    23794 File
    23795 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23796 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23797 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23798 self.name) 
    23799  
    23800 See log for complete Python traceback. 
    23801  
    23802 Traceback (most recent call last): 
    23803 File
    23804 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23805 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23806 mouseMoveEvent 
    23807 self.moveSegmentationPuck(x, y, record_seg=False) 
    23808 File
    23809 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23810 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23811 moveSegmentationPuck 
    23812 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23813 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23814 File
    23815 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23816 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23817 return self.position.origin() 
    23818 ^^^^^^^^^^^^^ 
    23819 File
    23820 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23821 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23822 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23823 self.name) 
    23824 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23825 cursor" 
    23826  
    23827 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23828 cursor" 
    23829  
    23830 File
    23831 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23832 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23833 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23834 self.name) 
    23835  
    23836 See log for complete Python traceback. 
    23837  
    23838 Traceback (most recent call last): 
    23839 File
    23840 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23841 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23842 mouseMoveEvent 
    23843 self.moveSegmentationPuck(x, y, record_seg=False) 
    23844 File
    23845 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23846 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23847 moveSegmentationPuck 
    23848 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23849 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23850 File
    23851 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23852 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23853 return self.position.origin() 
    23854 ^^^^^^^^^^^^^ 
    23855 File
    23856 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23857 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23858 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23859 self.name) 
    23860 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23861 cursor" 
    23862  
    23863 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23864 cursor" 
    23865  
    23866 File
    23867 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23868 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23869 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23870 self.name) 
    23871  
    23872 See log for complete Python traceback. 
    23873  
    23874 Traceback (most recent call last): 
    23875 File
    23876 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23877 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23878 mouseMoveEvent 
    23879 self.moveSegmentationPuck(x, y, record_seg=False) 
    23880 File
    23881 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23882 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23883 moveSegmentationPuck 
    23884 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23885 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23886 File
    23887 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23888 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23889 return self.position.origin() 
    23890 ^^^^^^^^^^^^^ 
    23891 File
    23892 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23893 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23894 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23895 self.name) 
    23896 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23897 cursor" 
    23898  
    23899 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23900 cursor" 
    23901  
    23902 File
    23903 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23904 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23905 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23906 self.name) 
    23907  
    23908 See log for complete Python traceback. 
    23909  
    23910 Traceback (most recent call last): 
    23911 File
    23912 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23913 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23914 mouseMoveEvent 
    23915 self.moveSegmentationPuck(x, y, record_seg=False) 
    23916 File
    23917 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23918 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23919 moveSegmentationPuck 
    23920 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23921 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23922 File
    23923 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23924 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23925 return self.position.origin() 
    23926 ^^^^^^^^^^^^^ 
    23927 File
    23928 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23929 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23930 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23931 self.name) 
    23932 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23933 cursor" 
    23934  
    23935 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23936 cursor" 
    23937  
    23938 File
    23939 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23940 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23941 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23942 self.name) 
    23943  
    23944 See log for complete Python traceback. 
    23945  
    23946 Traceback (most recent call last): 
    23947 File
    23948 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23949 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23950 mouseMoveEvent 
    23951 self.moveSegmentationPuck(x, y, record_seg=False) 
    23952 File
    23953 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23954 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23955 moveSegmentationPuck 
    23956 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23957 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23958 File
    23959 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23960 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23961 return self.position.origin() 
    23962 ^^^^^^^^^^^^^ 
    23963 File
    23964 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23965 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23966 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23967 self.name) 
    23968 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23969 cursor" 
    23970  
    23971 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    23972 cursor" 
    23973  
    23974 File
    23975 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23976 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    23977 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    23978 self.name) 
    23979  
    23980 See log for complete Python traceback. 
    23981  
    23982 Traceback (most recent call last): 
    23983 File
    23984 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23985 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    23986 mouseMoveEvent 
    23987 self.moveSegmentationPuck(x, y, record_seg=False) 
    23988 File
    23989 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23990 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    23991 moveSegmentationPuck 
    23992 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    23993 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    23994 File
    23995 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    23996 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    23997 return self.position.origin() 
    23998 ^^^^^^^^^^^^^ 
    23999 File
    24000 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24001 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24002 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24003 self.name) 
    24004 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24005 cursor" 
    24006  
    24007 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24008 cursor" 
    24009  
    24010 File
    24011 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24012 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24013 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24014 self.name) 
    24015  
    24016 See log for complete Python traceback. 
    24017  
    24018 Traceback (most recent call last): 
    24019 File
    24020 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24021 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24022 mouseMoveEvent 
    24023 self.moveSegmentationPuck(x, y, record_seg=False) 
    24024 File
    24025 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24026 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24027 moveSegmentationPuck 
    24028 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24029 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24030 File
    24031 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24032 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24033 return self.position.origin() 
    24034 ^^^^^^^^^^^^^ 
    24035 File
    24036 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24037 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24038 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24039 self.name) 
    24040 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24041 cursor" 
    24042  
    24043 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24044 cursor" 
    24045  
    24046 File
    24047 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24048 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24049 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24050 self.name) 
    24051  
    24052 See log for complete Python traceback. 
    24053  
    24054 Traceback (most recent call last): 
    24055 File
    24056 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24057 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24058 mouseMoveEvent 
    24059 self.moveSegmentationPuck(x, y, record_seg=False) 
    24060 File
    24061 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24062 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24063 moveSegmentationPuck 
    24064 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24065 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24066 File
    24067 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24068 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24069 return self.position.origin() 
    24070 ^^^^^^^^^^^^^ 
    24071 File
    24072 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24073 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24074 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24075 self.name) 
    24076 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24077 cursor" 
    24078  
    24079 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24080 cursor" 
    24081  
    24082 File
    24083 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24084 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24085 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24086 self.name) 
    24087  
    24088 See log for complete Python traceback. 
    24089  
    24090 Traceback (most recent call last): 
    24091 File
    24092 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24093 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    24094 self.leaveEvent() 
    24095 File
    24096 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24097 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    24098 self.segmentation_tool.make_puck_invisible(self.axis) 
    24099 File
    24100 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24101 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    24102 make_puck_invisible 
    24103 self.segmentation_cursors[axis].display = False 
    24104 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24105 File
    24106 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24107 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    24108 super(Drawing, self).__setattr__(key, value) 
    24109 File
    24110 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24111 packages/chimerax/core/models.py", line 345, in _set_display 
    24112 Drawing.set_display(self, display) 
    24113 File
    24114 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24115 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    24116 dp = self.display_positions 
    24117 ^^^^^^^^^^^^^^^^^^^^^^ 
    24118 File
    24119 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24120 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24121 dp = ones((len(self._positions),), bool) 
    24122 ^^^^^^^^^^^^^^^^^^^^ 
    24123 TypeError: object of type 'NoneType' has no len() 
    24124  
    24125 TypeError: object of type 'NoneType' has no len() 
    24126  
    24127 File
    24128 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24129 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24130 dp = ones((len(self._positions),), bool) 
    24131 ^^^^^^^^^^^^^^^^^^^^ 
    24132  
    24133 See log for complete Python traceback. 
    24134  
    24135 Traceback (most recent call last): 
    24136 File
    24137 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24138 packages/chimerax/segmentations/ui/orthoplanes.py", line 1127, in
    24139 mouseStoppedMoving 
    24140 level = self.drawingParentVolume().data.matrix()[ 
    24141 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24142 AttributeError: 'NoneType' object has no attribute 'data' 
    24143  
    24144 AttributeError: 'NoneType' object has no attribute 'data' 
    24145  
    24146 File
    24147 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24148 packages/chimerax/segmentations/ui/orthoplanes.py", line 1127, in
    24149 mouseStoppedMoving 
    24150 level = self.drawingParentVolume().data.matrix()[ 
    24151 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24152  
    24153 See log for complete Python traceback. 
    24154  
    24155 Traceback (most recent call last): 
    24156 File
    24157 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24158 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    24159 self.enterEvent() 
    24160 File
    24161 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24162 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    24163 self.segmentation_tool.make_puck_visible(self.axis) 
    24164 File
    24165 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24166 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    24167 make_puck_visible 
    24168 self.segmentation_cursors[axis].display = True 
    24169 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24170 File
    24171 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24172 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    24173 super(Drawing, self).__setattr__(key, value) 
    24174 File
    24175 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24176 packages/chimerax/core/models.py", line 345, in _set_display 
    24177 Drawing.set_display(self, display) 
    24178 File
    24179 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24180 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    24181 dp = self.display_positions 
    24182 ^^^^^^^^^^^^^^^^^^^^^^ 
    24183 File
    24184 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24185 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24186 dp = ones((len(self._positions),), bool) 
    24187 ^^^^^^^^^^^^^^^^^^^^ 
    24188 TypeError: object of type 'NoneType' has no len() 
    24189  
    24190 TypeError: object of type 'NoneType' has no len() 
    24191  
    24192 File
    24193 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24194 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24195 dp = ones((len(self._positions),), bool) 
    24196 ^^^^^^^^^^^^^^^^^^^^ 
    24197  
    24198 See log for complete Python traceback. 
    24199  
    24200 Traceback (most recent call last): 
    24201 File
    24202 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24203 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24204 mouseMoveEvent 
    24205 self.moveSegmentationPuck(x, y, record_seg=False) 
    24206 File
    24207 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24208 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24209 moveSegmentationPuck 
    24210 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24211 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24212 File
    24213 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24214 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24215 return self.position.origin() 
    24216 ^^^^^^^^^^^^^ 
    24217 File
    24218 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24219 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24220 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24221 self.name) 
    24222 RuntimeError: Tried to get the position of deleted drawing "sagittal
    24223 segmentation cursor" 
    24224  
    24225 RuntimeError: Tried to get the position of deleted drawing "sagittal
    24226 segmentation cursor" 
    24227  
    24228 File
    24229 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24230 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24231 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24232 self.name) 
    24233  
    24234 See log for complete Python traceback. 
    24235  
    24236 Traceback (most recent call last): 
    24237 File
    24238 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24239 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    24240 self.leaveEvent() 
    24241 File
    24242 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24243 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    24244 self.segmentation_tool.make_puck_invisible(self.axis) 
    24245 File
    24246 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24247 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    24248 make_puck_invisible 
    24249 self.segmentation_cursors[axis].display = False 
    24250 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24251 File
    24252 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24253 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    24254 super(Drawing, self).__setattr__(key, value) 
    24255 File
    24256 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24257 packages/chimerax/core/models.py", line 345, in _set_display 
    24258 Drawing.set_display(self, display) 
    24259 File
    24260 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24261 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    24262 dp = self.display_positions 
    24263 ^^^^^^^^^^^^^^^^^^^^^^ 
    24264 File
    24265 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24266 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24267 dp = ones((len(self._positions),), bool) 
    24268 ^^^^^^^^^^^^^^^^^^^^ 
    24269 TypeError: object of type 'NoneType' has no len() 
    24270  
    24271 TypeError: object of type 'NoneType' has no len() 
    24272  
    24273 File
    24274 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24275 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24276 dp = ones((len(self._positions),), bool) 
    24277 ^^^^^^^^^^^^^^^^^^^^ 
    24278  
    24279 See log for complete Python traceback. 
    24280  
    24281 Traceback (most recent call last): 
    24282 File
    24283 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24284 packages/chimerax/segmentations/ui/orthoplanes.py", line 894, in event 
    24285 self.enterEvent() 
    24286 File
    24287 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24288 packages/chimerax/segmentations/ui/orthoplanes.py", line 918, in enterEvent 
    24289 self.segmentation_tool.make_puck_visible(self.axis) 
    24290 File
    24291 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24292 packages/chimerax/segmentations/ui/segmentations.py", line 810, in
    24293 make_puck_visible 
    24294 self.segmentation_cursors[axis].display = True 
    24295 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24296 File
    24297 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24298 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    24299 super(Drawing, self).__setattr__(key, value) 
    24300 File
    24301 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24302 packages/chimerax/core/models.py", line 345, in _set_display 
    24303 Drawing.set_display(self, display) 
    24304 File
    24305 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24306 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    24307 dp = self.display_positions 
    24308 ^^^^^^^^^^^^^^^^^^^^^^ 
    24309 File
    24310 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24311 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24312 dp = ones((len(self._positions),), bool) 
    24313 ^^^^^^^^^^^^^^^^^^^^ 
    24314 TypeError: object of type 'NoneType' has no len() 
    24315  
    24316 TypeError: object of type 'NoneType' has no len() 
    24317  
    24318 File
    24319 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24320 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24321 dp = ones((len(self._positions),), bool) 
    24322 ^^^^^^^^^^^^^^^^^^^^ 
    24323  
    24324 See log for complete Python traceback. 
    24325  
    24326 Traceback (most recent call last): 
    24327 File
    24328 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24329 packages/chimerax/segmentations/ui/orthoplanes.py", line 1164, in
    24330 mouseMoveEvent 
    24331 self.moveSegmentationPuck(x, y, record_seg=False) 
    24332 File
    24333 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24334 packages/chimerax/segmentations/ui/orthoplanes.py", line 1090, in
    24335 moveSegmentationPuck 
    24336 old_origin = self.segmentation_tool.segmentation_cursors[self.axis].origin 
    24337 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24338 File
    24339 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24340 packages/chimerax/segmentations/graphics/cylinder.py", line 77, in origin 
    24341 return self.position.origin() 
    24342 ^^^^^^^^^^^^^ 
    24343 File
    24344 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24345 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24346 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24347 self.name) 
    24348 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24349 cursor" 
    24350  
    24351 RuntimeError: Tried to get the position of deleted drawing "axial segmentation
    24352 cursor" 
    24353  
    24354 File
    24355 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24356 packages/chimerax/graphics/drawing.py", line 503, in _drawing_get_position 
    24357 raise RuntimeError('Tried to get the position of deleted drawing "%s"' %
    24358 self.name) 
    24359  
    24360 See log for complete Python traceback. 
    24361  
    24362 Traceback (most recent call last): 
    24363 File
    24364 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24365 packages/chimerax/segmentations/ui/orthoplanes.py", line 896, in event 
    24366 self.leaveEvent() 
    24367 File
    24368 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24369 packages/chimerax/segmentations/ui/orthoplanes.py", line 923, in leaveEvent 
    24370 self.segmentation_tool.make_puck_invisible(self.axis) 
    24371 File
    24372 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24373 packages/chimerax/segmentations/ui/segmentations.py", line 814, in
    24374 make_puck_invisible 
    24375 self.segmentation_cursors[axis].display = False 
    24376 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 
    24377 File
    24378 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24379 packages/chimerax/graphics/drawing.py", line 266, in __setattr__ 
    24380 super(Drawing, self).__setattr__(key, value) 
    24381 File
    24382 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24383 packages/chimerax/core/models.py", line 345, in _set_display 
    24384 Drawing.set_display(self, display) 
    24385 File
    24386 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24387 packages/chimerax/graphics/drawing.py", line 392, in set_display 
    24388 dp = self.display_positions 
    24389 ^^^^^^^^^^^^^^^^^^^^^^ 
    24390 File
    24391 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24392 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24393 dp = ones((len(self._positions),), bool) 
    24394 ^^^^^^^^^^^^^^^^^^^^ 
    24395 TypeError: object of type 'NoneType' has no len() 
    24396  
    24397 TypeError: object of type 'NoneType' has no len() 
    24398  
    24399 File
    24400 "/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
    24401 packages/chimerax/graphics/drawing.py", line 406, in get_display_positions 
    24402 dp = ones((len(self._positions),), bool) 
    24403 ^^^^^^^^^^^^^^^^^^^^ 
    24404  
    24405 See log for complete Python traceback. 
    24406  
    24407 
    24408 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24409 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    24410 > includeMaps true
    24411 
    24412 ——— End of log from Sat Aug 24 18:41:04 2024 ———
    24413 
    24414 opened ChimeraX session 
    24415 
    24416 > ui tool show "Segment Map"
    24417 
    24418 > hide #!1.6 models
    24419 
    24420 The cached device pixel ratio value was stale on window expose. Please file a
    24421 QTBUG which explains how to reproduce. 
    24422 
    24423 Segmenting FlgY-PflA.mrc, density threshold 0.002900 
    24424 Only showing 60 of 1053 regions. 
    24425 Showing 60 of 1053 region surfaces 
    24426 46616 watershed regions, grouped to 1053 regions 
    24427 Showing FlgY-PflA.seg - 1053 regions, 60 surfaces 
    24428 
    24429 > hide #!4 models
    24430 
    24431 > hide #!5 models
    24432 
    24433 > hide #!7 models
    24434 
    24435 > hide #16 models
    24436 
    24437 > hide #18 models
    24438 
    24439 > hide #!19 models
    24440 
    24441 > hide #20 models
    24442 
    24443 > hide #!21 models
    24444 
    24445 > hide #22 models
    24446 
    24447 > show #!2 models
    24448 
    24449 > hide #!2 models
    24450 
    24451 Segmenting FlgY-PflA.mrc, density threshold 0.002900 
    24452 Only showing 60 of 1053 regions. 
    24453 Showing 60 of 1053 region surfaces 
    24454 46616 watershed regions, grouped to 1053 regions 
    24455 Showing FlgY-PflA.seg - 1053 regions, 60 surfaces 
    24456 
    24457 > select #21.1
    24458 
    24459 1 model selected 
    24460 
    24461 > select add #21.25
    24462 
    24463 2 models selected 
    24464 
    24465 > select add #21.22
    24466 
    24467 3 models selected 
    24468 
    24469 > select add #21.19
    24470 
    24471 4 models selected 
    24472 
    24473 > select add #21.28
    24474 
    24475 5 models selected 
    24476 
    24477 > select add #21.5
    24478 
    24479 6 models selected 
    24480 
    24481 > select add #21.16
    24482 
    24483 7 models selected 
    24484 
    24485 > select add #21.15
    24486 
    24487 8 models selected 
    24488 
    24489 > select add #21.14
    24490 
    24491 9 models selected 
    24492 Grouped 9 regions 
    24493 
    24494 > select add #21.11
    24495 
    24496 2 models selected 
    24497 
    24498 > select add #21.8
    24499 
    24500 3 models selected 
    24501 
    24502 > select add #21.30
    24503 
    24504 4 models selected 
    24505 
    24506 > select add #21.18
    24507 
    24508 5 models selected 
    24509 
    24510 > select add #21.23
    24511 
    24512 6 models selected 
    24513 
    24514 > select add #21.26
    24515 
    24516 7 models selected 
    24517 
    24518 > select add #21.9
    24519 
    24520 8 models selected 
    24521 
    24522 > select add #21.4
    24523 
    24524 9 models selected 
    24525 Grouped 9 regions 
    24526 
    24527 > select add #21.31
    24528 
    24529 2 models selected 
    24530 
    24531 > select add #21.20
    24532 
    24533 3 models selected 
    24534 
    24535 > select add #21.24
    24536 
    24537 4 models selected 
    24538 
    24539 > select add #21.27
    24540 
    24541 5 models selected 
    24542 
    24543 > select add #21.6
    24544 
    24545 6 models selected 
    24546 
    24547 > select add #21.2
    24548 
    24549 7 models selected 
    24550 Grouped 7 regions 
    24551 Ungrouped to 7 regions 
    24552 
    24553 > select subtract #21.6
    24554 
    24555 6 models selected 
    24556 
    24557 > select subtract #21.2
    24558 
    24559 5 models selected 
    24560 
    24561 > select subtract #21.4
    24562 
    24563 4 models selected 
    24564 
    24565 > select add #21.37
    24566 
    24567 5 models selected 
    24568 Grouped 5 regions 
    24569 Ungrouped to 5 regions 
    24570 
    24571 > select #21.8
    24572 
    24573 1 model selected 
    24574 
    24575 > select add #21.2
    24576 
    24577 2 models selected 
    24578 
    24579 > select add #21.6
    24580 
    24581 3 models selected 
    24582 
    24583 > select add #21.4
    24584 
    24585 4 models selected 
    24586 
    24587 > select add #21.11
    24588 
    24589 5 models selected 
    24590 Grouped 5 regions 
    24591 
    24592 The cached device pixel ratio value was stale on window expose. Please file a
    24593 QTBUG which explains how to reproduce. 
    24594 
    24595 Opened FlgY-PflA_imasked as #23, grid size 220,250,200, pixel 2.15,2.15,2.15,
    24596 shown at step 1, values float32 
    24597 
    24598 The cached device pixel ratio value was stale on window expose. Please file a
    24599 QTBUG which explains how to reproduce. 
    24600 
    24601 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24602 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    24603 > segment_Aug2420204/4x-FlgY-PflA.mrc models #23
    24604 
    24605 > hide #!1 models
    24606 
    24607 > select add #21
    24608 
    24609 41 models selected 
    24610 
    24611 > hide #!21 models
    24612 
    24613 > select subtract #21
    24614 
    24615 Nothing selected 
    24616 
    24617 > show #22 models
    24618 
    24619 > show #20 models
    24620 
    24621 > show #18 models
    24622 
    24623 > show #16 models
    24624 
    24625 > volume gaussian #23 sDev 1.5
    24626 
    24627 Opened 4x-FlgY-PflA.mrc gaussian as #24, grid size 220,250,200, pixel
    24628 2.15,2.15,2.15, shown at step 1, values float32 
    24629 
    24630 > color #24 #72727259 models
    24631 
    24632 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24633 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    24634 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    24635 
    24636 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #25 
    24637 --- 
    24638 Chain | Description 
    24639 A | . 
    24640 B | . 
    24641  
    24642 
    24643 > hide #16 models
    24644 
    24645 > hide #18 models
    24646 
    24647 > hide #20 models
    24648 
    24649 > hide #22 models
    24650 
    24651 > hide #!24 models
    24652 
    24653 > show #!6 models
    24654 
    24655 > select add #25
    24656 
    24657 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    24658 
    24659 > ui mousemode right "translate selected models"
    24660 
    24661 > view matrix models #25,1,0,0,54.542,0,1,0,107.69,0,0,1,187.71
    24662 
    24663 > view matrix models #25,1,0,0,315.46,0,1,0,99.412,0,0,1,177.4
    24664 
    24665 > show #!23 models
    24666 
    24667 > ui mousemode right "rotate selected models"
    24668 
    24669 > view matrix models
    24670 > #25,0.92497,-0.25489,-0.2819,309.98,-0.073904,0.60695,-0.7913,88.864,0.37279,0.75276,0.54257,186
    24671 
    24672 > ui mousemode right "translate selected models"
    24673 
    24674 > view matrix models
    24675 > #25,0.92497,-0.25489,-0.2819,323.18,-0.073904,0.60695,-0.7913,59.794,0.37279,0.75276,0.54257,154.07
    24676 
    24677 > view matrix models
    24678 > #25,0.92497,-0.25489,-0.2819,315.02,-0.073904,0.60695,-0.7913,50.859,0.37279,0.75276,0.54257,155.86
    24679 
    24680 > view matrix models
    24681 > #25,0.92497,-0.25489,-0.2819,313.66,-0.073904,0.60695,-0.7913,52.673,0.37279,0.75276,0.54257,159.19
    24682 
    24683 > ui tool show "Fit in Map"
    24684 
    24685 The cached device pixel ratio value was stale on window expose. Please file a
    24686 QTBUG which explains how to reproduce. 
    24687 
    24688 [Repeated 1 time(s)]
    24689 
    24690 > fitmap #25 inMap #6
    24691 
    24692 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) to map Cage.mrc
    24693 gaussian (#6) using 3000 atoms 
    24694 average map value = 0.01786, steps = 568 
    24695 shifted from previous position = 6.42 
    24696 rotated from previous position = 18.5 degrees 
    24697 atoms outside contour = 1398, contour level = 0.0029 
    24698  
    24699 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) relative to
    24700 Cage.mrc gaussian (#6) coordinates: 
    24701 Matrix rotation and translation 
    24702 0.93069891 0.01078518 -0.36562716 312.00547894 
    24703 -0.24907478 0.75071594 -0.61187199 52.38438399 
    24704 0.26788298 0.66053710 0.70137682 165.28070412 
    24705 Axis 0.88058898 -0.43842979 -0.17983982 
    24706 Axis point 0.00000000 -168.92693268 313.54903096 
    24707 Rotation angle (degrees) 46.25929668 
    24708 Shift along axis 222.05766187 
    24709  
    24710 
    24711 > fitmap #25 inMap #6
    24712 
    24713 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) to map Cage.mrc
    24714 gaussian (#6) using 3000 atoms 
    24715 average map value = 0.01786, steps = 48 
    24716 shifted from previous position = 0.0347 
    24717 rotated from previous position = 0.68 degrees 
    24718 atoms outside contour = 1400, contour level = 0.0029 
    24719  
    24720 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#25) relative to
    24721 Cage.mrc gaussian (#6) coordinates: 
    24722 Matrix rotation and translation 
    24723 0.92708453 0.01757937 -0.37443990 312.02395524 
    24724 -0.25911489 0.75187863 -0.60624912 52.39103307 
    24725 0.27087588 0.65906714 0.70161012 165.31032924 
    24726 Axis 0.87439758 -0.44594586 -0.19120974 
    24727 Axis point 0.00000000 -170.71746548 316.54258510 
    24728 Rotation angle (degrees) 46.34719667 
    24729 Shift along axis 217.86048186 
    24730  
    24731 
    24732 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24733 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    24734 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    24735 
    24736 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #26 
    24737 --- 
    24738 Chain | Description 
    24739 A | . 
    24740 B | . 
    24741  
    24742 
    24743 > select subtract #25
    24744 
    24745 Nothing selected 
    24746 
    24747 > select add #26
    24748 
    24749 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    24750 
    24751 > select subtract #26
    24752 
    24753 Nothing selected 
    24754 
    24755 > select add #26
    24756 
    24757 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    24758 
    24759 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24760 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    24761 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    24762 
    24763 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #27 
    24764 --- 
    24765 Chain | Description 
    24766 A | . 
    24767 B | . 
    24768  
    24769 
    24770 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24771 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    24772 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    24773 
    24774 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #28 
    24775 --- 
    24776 Chain | Description 
    24777 A | . 
    24778 B | . 
    24779  
    24780 
    24781 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24782 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    24783 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    24784 
    24785 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #29 
    24786 --- 
    24787 Chain | Description 
    24788 A | . 
    24789 B | . 
    24790  
    24791 
    24792 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24793 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    24794 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    24795 
    24796 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #30 
    24797 --- 
    24798 Chain | Description 
    24799 A | . 
    24800 B | . 
    24801  
    24802 
    24803 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    24804 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    24805 > files/fold_2024_08_24_18_52_cj_pilno/fold_2024_08_24_18_52_cj_pilno_model_0.cif
    24806 
    24807 Chain information for fold_2024_08_24_18_52_cj_pilno_model_0.cif #31 
    24808 --- 
    24809 Chain | Description 
    24810 A | . 
    24811 B | . 
    24812  
    24813 
    24814 > select add #27
    24815 
    24816 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    24817 
    24818 > select add #28
    24819 
    24820 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    24821 
    24822 > select add #29
    24823 
    24824 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    24825 
    24826 > select add #30
    24827 
    24828 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    24829 
    24830 > select add #31
    24831 
    24832 18000 atoms, 18306 bonds, 2184 residues, 6 models selected 
    24833 
    24834 > view matrix models
    24835 > #26,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#27,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#28,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#29,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#30,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196,#31,1,0,0,88.1,0,1,0,244.56,0,0,1,-3.9196
    24836 
    24837 > view matrix models
    24838 > #26,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#27,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#28,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#29,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#30,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34,#31,1,0,0,151.79,0,1,0,186.89,0,0,1,231.34
    24839 
    24840 > view matrix models
    24841 > #26,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#27,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#28,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#29,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#30,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39,#31,1,0,0,362.26,0,1,0,196.53,0,0,1,161.39
    24842 
    24843 > view matrix models
    24844 > #26,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#27,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#28,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#29,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#30,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21,#31,1,0,0,353.03,0,1,0,179.71,0,0,1,162.21
    24845 
    24846 > view matrix models
    24847 > #26,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#27,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#28,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#29,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#30,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64,#31,1,0,0,354.78,0,1,0,130.47,0,0,1,162.64
    24848 
    24849 > ui mousemode right "rotate selected models"
    24850 
    24851 > view matrix models
    24852 > #26,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#27,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#28,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#29,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#30,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04,#31,0.99976,0.0017322,-0.021724,354.62,-0.0074231,0.96429,-0.26473,128.05,0.02049,0.26482,0.96408,165.04
    24853 
    24854 > view matrix models
    24855 > #26,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#27,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#28,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#29,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#30,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36,#31,0.99641,-0.027713,-0.08003,353.87,-0.058377,0.45986,-0.88607,118.11,0.061359,0.88756,0.45659,167.36
    24856 
    24857 > view matrix models
    24858 > #26,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#27,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#28,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#29,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#30,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22,#31,0.97839,-0.18605,-0.090176,352.12,0.005967,0.46138,-0.88718,119.03,0.20667,0.86747,0.45253,169.22
    24859 
    24860 > ui mousemode right "translate selected models"
    24861 
    24862 > view matrix models
    24863 > #26,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#27,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#28,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#29,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#30,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185,#31,0.97839,-0.18605,-0.090176,448.65,0.005967,0.46138,-0.88718,143.03,0.20667,0.86747,0.45253,185
    24864 
    24865 > view matrix models
    24866 > #26,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#27,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#28,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#29,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#30,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25,#31,0.97839,-0.18605,-0.090176,445.68,0.005967,0.46138,-0.88718,216.05,0.20667,0.86747,0.45253,176.25
    24867 
    24868 > select subtract #27
    24869 
    24870 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    24871 
    24872 > select subtract #28
    24873 
    24874 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    24875 
    24876 > select subtract #29
    24877 
    24878 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    24879 
    24880 > select subtract #30
    24881 
    24882 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    24883 
    24884 > select subtract #31
    24885 
    24886 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    24887 
    24888 > view matrix models
    24889 > #26,0.97839,-0.18605,-0.090176,364.84,0.005967,0.46138,-0.88718,116.08,0.20667,0.86747,0.45253,205.94
    24890 
    24891 > view matrix models
    24892 > #26,0.97839,-0.18605,-0.090176,366.08,0.005967,0.46138,-0.88718,98.395,0.20667,0.86747,0.45253,165.67
    24893 
    24894 > view matrix models
    24895 > #26,0.97839,-0.18605,-0.090176,349.59,0.005967,0.46138,-0.88718,99.774,0.20667,0.86747,0.45253,174.21
    24896 
    24897 > view matrix models
    24898 > #26,0.97839,-0.18605,-0.090176,347.22,0.005967,0.46138,-0.88718,98.372,0.20667,0.86747,0.45253,151.02
    24899 
    24900 > view matrix models
    24901 > #26,0.97839,-0.18605,-0.090176,349.81,0.005967,0.46138,-0.88718,120.02,0.20667,0.86747,0.45253,156.45
    24902 
    24903 > fitmap #26 inMap #6
    24904 
    24905 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) to map Cage.mrc
    24906 gaussian (#6) using 3000 atoms 
    24907 average map value = 0.009604, steps = 80 
    24908 shifted from previous position = 4.66 
    24909 rotated from previous position = 4.4 degrees 
    24910 atoms outside contour = 1638, contour level = 0.0029 
    24911  
    24912 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) relative to
    24913 Cage.mrc gaussian (#6) coordinates: 
    24914 Matrix rotation and translation 
    24915 0.99095832 -0.12732914 -0.04229540 348.72422743 
    24916 0.02130832 0.46059175 -0.88735629 116.15241974 
    24917 0.13246722 0.87843186 0.45914040 158.94538969 
    24918 Axis 0.99166488 -0.09814652 0.08347465 
    24919 Axis point 0.00000000 -31.74773307 188.65199171 
    24920 Rotation angle (degrees) 62.91285056 
    24921 Shift along axis 347.68552652 
    24922  
    24923 
    24924 > fitmap #26 inMap #6
    24925 
    24926 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) to map Cage.mrc
    24927 gaussian (#6) using 3000 atoms 
    24928 average map value = 0.009604, steps = 48 
    24929 shifted from previous position = 0.0173 
    24930 rotated from previous position = 0.486 degrees 
    24931 atoms outside contour = 1639, contour level = 0.0029 
    24932  
    24933 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#26) relative to
    24934 Cage.mrc gaussian (#6) coordinates: 
    24935 Matrix rotation and translation 
    24936 0.99081929 -0.13067073 -0.03467425 348.71015746 
    24937 0.02931675 0.45804974 -0.88844300 116.13587719 
    24938 0.13197602 0.87926992 0.45767536 158.96154931 
    24939 Axis 0.99156840 -0.09347963 0.08974224 
    24940 Axis point 0.00000000 -30.41823890 186.01327426 
    24941 Rotation angle (degrees) 63.04618095 
    24942 Shift along axis 349.17919971 
    24943  
    24944 
    24945 > select subtract #26
    24946 
    24947 Nothing selected 
    24948 
    24949 > select add #27
    24950 
    24951 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    24952 
    24953 > view matrix models
    24954 > #27,0.97839,-0.18605,-0.090176,387.83,0.005967,0.46138,-0.88718,180.85,0.20667,0.86747,0.45253,210.83
    24955 
    24956 > view matrix models
    24957 > #27,0.97839,-0.18605,-0.090176,367.4,0.005967,0.46138,-0.88718,158.27,0.20667,0.86747,0.45253,164.47
    24958 
    24959 > view matrix models
    24960 > #27,0.97839,-0.18605,-0.090176,365.76,0.005967,0.46138,-0.88718,180.89,0.20667,0.86747,0.45253,153.66
    24961 
    24962 > fitmap #27 inMap #6
    24963 
    24964 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    24965 gaussian (#6) using 3000 atoms 
    24966 average map value = 0.01953, steps = 280 
    24967 shifted from previous position = 8.48 
    24968 rotated from previous position = 25.9 degrees 
    24969 atoms outside contour = 1513, contour level = 0.0029 
    24970  
    24971 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    24972 Cage.mrc gaussian (#6) coordinates: 
    24973 Matrix rotation and translation 
    24974 0.94621886 -0.21346030 0.24311432 366.79271649 
    24975 0.32340230 0.64494702 -0.69242638 173.76134240 
    24976 -0.00899032 0.73381063 0.67929458 158.67334416 
    24977 Axis 0.92334252 0.16321195 0.34756360 
    24978 Axis point 0.00000000 40.77645214 130.52364332 
    24979 Rotation angle (degrees) 50.56293760 
    24980 Shift along axis 422.18431665 
    24981  
    24982 
    24983 > ui mousemode right "rotate selected models"
    24984 
    24985 > view matrix models
    24986 > #27,0.94842,-0.22882,0.21943,366.51,0.31326,0.57,-0.75959,172.44,0.048731,0.78914,0.61228,159.48
    24987 
    24988 > fitmap #27 inMap #6
    24989 
    24990 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    24991 gaussian (#6) using 3000 atoms 
    24992 average map value = 0.01953, steps = 112 
    24993 shifted from previous position = 1.67 
    24994 rotated from previous position = 6.02 degrees 
    24995 atoms outside contour = 1509, contour level = 0.0029 
    24996  
    24997 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    24998 Cage.mrc gaussian (#6) coordinates: 
    24999 Matrix rotation and translation 
    25000 0.93694303 -0.22175852 0.27011277 366.74037708 
    25001 0.34906509 0.63155990 -0.69230460 173.82299032 
    25002 -0.01706795 0.74293691 0.66914380 158.66734319 
    25003 Axis 0.91354959 0.18279420 0.36333653 
    25004 Axis point 0.00000000 45.20597981 114.94745236 
    25005 Rotation angle (degrees) 51.76973869 
    25006 Shift along axis 424.45899636 
    25007  
    25008 
    25009 > ui mousemode right "translate selected models"
    25010 
    25011 > view matrix models
    25012 > #27,0.93694,-0.22176,0.27011,363.53,0.34907,0.63156,-0.6923,167.67,-0.017068,0.74294,0.66914,153.05
    25013 
    25014 > ui mousemode right "rotate selected models"
    25015 
    25016 > view matrix models
    25017 > #27,0.99739,-0.069445,-0.01991,363.57,0.036735,0.72484,-0.68794,164.1,0.062205,0.68541,0.72549,154.09
    25018 
    25019 > ui mousemode right "translate selected models"
    25020 
    25021 > view matrix models
    25022 > #27,0.99739,-0.069445,-0.01991,361.19,0.036735,0.72484,-0.68794,175.13,0.062205,0.68541,0.72549,151.33
    25023 
    25024 > fitmap #27 inMap #6
    25025 
    25026 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25027 gaussian (#6) using 3000 atoms 
    25028 average map value = 0.01953, steps = 252 
    25029 shifted from previous position = 9.28 
    25030 rotated from previous position = 18.1 degrees 
    25031 atoms outside contour = 1513, contour level = 0.0029 
    25032  
    25033 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25034 Cage.mrc gaussian (#6) coordinates: 
    25035 Matrix rotation and translation 
    25036 0.94451291 -0.21523489 0.24813161 366.78885526 
    25037 0.32830983 0.64248911 -0.69240191 173.76722235 
    25038 -0.01039280 0.73544659 0.67750299 158.66921128 
    25039 Axis 0.92147509 0.16684109 0.35078156 
    25040 Axis point 0.00000000 41.77122619 127.55656810 
    25041 Rotation angle (degrees) 50.78349537 
    25042 Shift along axis 422.63654135 
    25043  
    25044 
    25045 > fitmap #27 inMap #6
    25046 
    25047 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25048 gaussian (#6) using 3000 atoms 
    25049 average map value = 0.01953, steps = 44 
    25050 shifted from previous position = 0.0355 
    25051 rotated from previous position = 0.553 degrees 
    25052 atoms outside contour = 1511, contour level = 0.0029 
    25053  
    25054 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25055 Cage.mrc gaussian (#6) coordinates: 
    25056 Matrix rotation and translation 
    25057 0.94168851 -0.21779536 0.25649157 366.78468020 
    25058 0.33623482 0.63850725 -0.69228220 173.79043891 
    25059 -0.01299588 0.73815559 0.67450532 158.67110367 
    25060 Axis 0.91843447 0.17302854 0.35572355 
    25061 Axis point 0.00000000 43.17052236 122.67762247 
    25062 Rotation angle (degrees) 51.14508035 
    25063 Shift along axis 423.38144847 
    25064  
    25065 
    25066 > fitmap #27 inMap #6
    25067 
    25068 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25069 gaussian (#6) using 3000 atoms 
    25070 average map value = 0.01953, steps = 44 
    25071 shifted from previous position = 0.0272 
    25072 rotated from previous position = 0.412 degrees 
    25073 atoms outside contour = 1510, contour level = 0.0029 
    25074  
    25075 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25076 Cage.mrc gaussian (#6) coordinates: 
    25077 Matrix rotation and translation 
    25078 0.93953384 -0.21962719 0.26275476 366.78043220 
    25079 0.34212723 0.63558863 -0.69208096 173.80679755 
    25080 -0.01500414 0.74012904 0.67229746 158.66602576 
    25081 Axis 0.91613847 0.17767339 0.35933615 
    25082 Axis point 0.00000000 44.15249879 119.05884916 
    25083 Rotation angle (degrees) 51.41243521 
    25084 Shift along axis 423.91694639 
    25085  
    25086 
    25087 > fitmap #27 inMap #6
    25088 
    25089 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25090 gaussian (#6) using 3000 atoms 
    25091 average map value = 0.01953, steps = 44 
    25092 shifted from previous position = 0.0298 
    25093 rotated from previous position = 0.267 degrees 
    25094 atoms outside contour = 1509, contour level = 0.0029 
    25095  
    25096 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25097 Cage.mrc gaussian (#6) coordinates: 
    25098 Matrix rotation and translation 
    25099 0.93814735 -0.22049321 0.26694997 366.75288842 
    25100 0.34583549 0.63383328 -0.69184766 173.81071375 
    25101 -0.01665406 0.74137583 0.67088339 158.68003700 
    25102 Axis 0.91466615 0.18099271 0.36142422 
    25103 Axis point 0.00000000 44.57773271 116.64247738 
    25104 Rotation angle (degrees) 51.57921689 
    25105 Shift along axis 424.26573464 
    25106  
    25107 
    25108 > fitmap #27 inMap #6
    25109 
    25110 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25111 gaussian (#6) using 3000 atoms 
    25112 average map value = 0.01953, steps = 44 
    25113 shifted from previous position = 0.0305 
    25114 rotated from previous position = 0.168 degrees 
    25115 atoms outside contour = 1509, contour level = 0.0029 
    25116  
    25117 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25118 Cage.mrc gaussian (#6) coordinates: 
    25119 Matrix rotation and translation 
    25120 0.93732646 -0.22104332 0.26936771 366.73295202 
    25121 0.34802072 0.63233285 -0.69212481 173.83040193 
    25122 -0.01734049 0.74249244 0.66962996 158.67650720 
    25123 Axis 0.91390575 0.18264403 0.36251544 
    25124 Axis point 0.00000000 44.83490732 115.33507825 
    25125 Rotation angle (degrees) 51.70981167 
    25126 Shift along axis 424.43112130 
    25127  
    25128 
    25129 > fitmap #27 inMap #6
    25130 
    25131 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25132 gaussian (#6) using 3000 atoms 
    25133 average map value = 0.01953, steps = 40 
    25134 shifted from previous position = 0.0131 
    25135 rotated from previous position = 0.0733 degrees 
    25136 atoms outside contour = 1509, contour level = 0.0029 
    25137  
    25138 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25139 Cage.mrc gaussian (#6) coordinates: 
    25140 Matrix rotation and translation 
    25141 0.93692286 -0.22148591 0.27040626 366.74192142 
    25142 0.34909609 0.63174923 -0.69211620 173.83481465 
    25143 -0.01753496 0.74285725 0.66922016 158.67040115 
    25144 Axis 0.91349144 0.18330084 0.36322746 
    25145 Axis point 0.00000000 45.07288716 114.75396515 
    25146 Rotation angle (degrees) 51.76078401 
    25147 Shift along axis 424.51312093 
    25148  
    25149 
    25150 > fitmap #27 inMap #6
    25151 
    25152 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25153 gaussian (#6) using 3000 atoms 
    25154 average map value = 0.01953, steps = 40 
    25155 shifted from previous position = 0.0221 
    25156 rotated from previous position = 0.0406 degrees 
    25157 atoms outside contour = 1508, contour level = 0.0029 
    25158  
    25159 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25160 Cage.mrc gaussian (#6) coordinates: 
    25161 Matrix rotation and translation 
    25162 0.93668367 -0.22184159 0.27094283 366.76066305 
    25163 0.34972966 0.63172718 -0.69181640 173.82264727 
    25164 -0.01768830 0.74276987 0.66931312 158.67046326 
    25165 Axis 0.91316788 0.18372452 0.36382650 
    25166 Axis point 0.00000000 45.27925825 114.39758722 
    25167 Rotation angle (degrees) 51.76692208 
    25168 Shift along axis 424.57805917 
    25169  
    25170 
    25171 > fitmap #27 inMap #6
    25172 
    25173 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25174 gaussian (#6) using 3000 atoms 
    25175 average map value = 0.01953, steps = 60 
    25176 shifted from previous position = 0.0119 
    25177 rotated from previous position = 0.0423 degrees 
    25178 atoms outside contour = 1508, contour level = 0.0029 
    25179  
    25180 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25181 Cage.mrc gaussian (#6) coordinates: 
    25182 Matrix rotation and translation 
    25183 0.93645390 -0.22196751 0.27163307 366.74937626 
    25184 0.35032711 0.63156659 -0.69166072 173.82173880 
    25185 -0.01802817 0.74286881 0.66919423 158.67535648 
    25186 Axis 0.91289870 0.18433316 0.36419397 
    25187 Axis point 0.00000000 45.34117454 113.98980109 
    25188 Rotation angle (degrees) 51.78549254 
    25189 Shift along axis 424.63474809 
    25190  
    25191 
    25192 > fitmap #27 inMap #6
    25193 
    25194 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) to map Cage.mrc
    25195 gaussian (#6) using 3000 atoms 
    25196 average map value = 0.01953, steps = 40 
    25197 shifted from previous position = 0.022 
    25198 rotated from previous position = 0.0249 degrees 
    25199 atoms outside contour = 1509, contour level = 0.0029 
    25200  
    25201 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#27) relative to
    25202 Cage.mrc gaussian (#6) coordinates: 
    25203 Matrix rotation and translation 
    25204 0.93641420 -0.22200474 0.27173945 366.72842419 
    25205 0.35043859 0.63123101 -0.69191055 173.81554024 
    25206 -0.01792295 0.74314286 0.66889271 158.67860446 
    25207 Axis 0.91292264 0.18427145 0.36416518 
    25208 Axis point 0.00000000 45.32820172 113.96930463 
    25209 Rotation angle (degrees) 51.81016499 
    25210 Shift along axis 424.60914647 
    25211  
    25212 
    25213 > select subtract #27
    25214 
    25215 Nothing selected 
    25216 
    25217 > select add #28
    25218 
    25219 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    25220 
    25221 > view matrix models
    25222 > #28,0.97839,-0.18605,-0.090176,407.63,0.005967,0.46138,-0.88718,240.95,0.20667,0.86747,0.45253,198.78
    25223 
    25224 > view matrix models
    25225 > #28,0.97839,-0.18605,-0.090176,404.43,0.005967,0.46138,-0.88718,242.84,0.20667,0.86747,0.45253,144.69
    25226 
    25227 > view matrix models
    25228 > #28,0.97839,-0.18605,-0.090176,373.29,0.005967,0.46138,-0.88718,255.57,0.20667,0.86747,0.45253,151.77
    25229 
    25230 > fitmap #28 inMap #6
    25231 
    25232 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) to map Cage.mrc
    25233 gaussian (#6) using 3000 atoms 
    25234 average map value = 0.01097, steps = 228 
    25235 shifted from previous position = 8.43 
    25236 rotated from previous position = 15.6 degrees 
    25237 atoms outside contour = 1624, contour level = 0.0029 
    25238  
    25239 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) relative to
    25240 Cage.mrc gaussian (#6) coordinates: 
    25241 Matrix rotation and translation 
    25242 0.96962065 -0.16470294 0.18085559 378.55526378 
    25243 0.23468402 0.41784682 -0.87768300 251.51814896 
    25244 0.06898703 0.89346347 0.44380605 157.22083100 
    25245 Axis 0.97365954 0.06149795 0.21955661 
    25246 Axis point 0.00000000 61.59450883 216.38731833 
    25247 Rotation angle (degrees) 65.44057736 
    25248 Shift along axis 418.57066763 
    25249  
    25250 
    25251 > fitmap #28 inMap #6
    25252 
    25253 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) to map Cage.mrc
    25254 gaussian (#6) using 3000 atoms 
    25255 average map value = 0.01097, steps = 40 
    25256 shifted from previous position = 0.0353 
    25257 rotated from previous position = 0.453 degrees 
    25258 atoms outside contour = 1623, contour level = 0.0029 
    25259  
    25260 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) relative to
    25261 Cage.mrc gaussian (#6) coordinates: 
    25262 Matrix rotation and translation 
    25263 0.96785016 -0.16733909 0.18778632 378.54759744 
    25264 0.24190452 0.41473614 -0.87719789 251.54205267 
    25265 0.06890772 0.89442248 0.44188252 157.21758383 
    25266 Axis 0.97226621 0.06524064 0.22459312 
    25267 Axis point 0.00000000 62.89813805 213.57096048 
    25268 Rotation angle (degrees) 65.65472577 
    25269 Shift along axis 419.76979097 
    25270  
    25271 
    25272 > fitmap #28 inMap #6
    25273 
    25274 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) to map Cage.mrc
    25275 gaussian (#6) using 3000 atoms 
    25276 average map value = 0.01097, steps = 40 
    25277 shifted from previous position = 0.0069 
    25278 rotated from previous position = 0.367 degrees 
    25279 atoms outside contour = 1621, contour level = 0.0029 
    25280  
    25281 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#28) relative to
    25282 Cage.mrc gaussian (#6) coordinates: 
    25283 Matrix rotation and translation 
    25284 0.96642648 -0.16912838 0.19343072 378.53988770 
    25285 0.24760643 0.41192127 -0.87693325 251.52922671 
    25286 0.06863607 0.89538620 0.43996890 157.22179321 
    25287 Axis 0.97117290 0.06838338 0.22835700 
    25288 Axis point 0.00000000 63.82158988 211.22031347 
    25289 Rotation angle (degrees) 65.84802671 
    25290 Shift along axis 420.73079339 
    25291  
    25292 
    25293 > select subtract #28
    25294 
    25295 Nothing selected 
    25296 
    25297 > select add #29
    25298 
    25299 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    25300 
    25301 > view matrix models
    25302 > #29,0.97839,-0.18605,-0.090176,373.89,0.005967,0.46138,-0.88718,324.26,0.20667,0.86747,0.45253,184.36
    25303 
    25304 > view matrix models
    25305 > #29,0.97839,-0.18605,-0.090176,371.23,0.005967,0.46138,-0.88718,319.21,0.20667,0.86747,0.45253,146.58
    25306 
    25307 > fitmap #29 inMap #6
    25308 
    25309 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) to map Cage.mrc
    25310 gaussian (#6) using 3000 atoms 
    25311 average map value = 0.02245, steps = 504 
    25312 shifted from previous position = 17.7 
    25313 rotated from previous position = 33.6 degrees 
    25314 atoms outside contour = 1392, contour level = 0.0029 
    25315  
    25316 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) relative to
    25317 Cage.mrc gaussian (#6) coordinates: 
    25318 Matrix rotation and translation 
    25319 0.84135778 -0.47082416 0.26540854 375.49868125 
    25320 0.51855821 0.56476964 -0.64197557 312.43852446 
    25321 0.15236293 0.67776092 0.71932307 162.31677833 
    25322 Axis 0.79824961 0.06837624 0.59843317 
    25323 Axis point 0.00000000 244.30686457 276.50745024 
    25324 Rotation angle (degrees) 55.75552324 
    25325 Shift along axis 418.24078842 
    25326  
    25327 
    25328 > fitmap #29 inMap #6
    25329 
    25330 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) to map Cage.mrc
    25331 gaussian (#6) using 3000 atoms 
    25332 average map value = 0.02245, steps = 44 
    25333 shifted from previous position = 0.0341 
    25334 rotated from previous position = 0.305 degrees 
    25335 atoms outside contour = 1395, contour level = 0.0029 
    25336  
    25337 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) relative to
    25338 Cage.mrc gaussian (#6) coordinates: 
    25339 Matrix rotation and translation 
    25340 0.83886247 -0.47297828 0.26944629 375.52410862 
    25341 0.52301181 0.56310945 -0.63981746 312.40990588 
    25342 0.15089201 0.67764245 0.71974461 162.31258260 
    25343 Axis 0.79565230 0.07159837 0.60150734 
    25344 Axis point 0.00000000 245.45134357 273.81259008 
    25345 Rotation angle (degrees) 55.88482651 
    25346 Shift along axis 418.78687207 
    25347  
    25348 
    25349 > fitmap #29 inMap #6
    25350 
    25351 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) to map Cage.mrc
    25352 gaussian (#6) using 3000 atoms 
    25353 average map value = 0.02245, steps = 40 
    25354 shifted from previous position = 0.0681 
    25355 rotated from previous position = 0.151 degrees 
    25356 atoms outside contour = 1395, contour level = 0.0029 
    25357  
    25358 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#29) relative to
    25359 Cage.mrc gaussian (#6) coordinates: 
    25360 Matrix rotation and translation 
    25361 0.83767841 -0.47428935 0.27082188 375.55000338 
    25362 0.52509783 0.56299504 -0.63820753 312.34592944 
    25363 0.15022366 0.67682065 0.72065710 162.32948341 
    25364 Axis 0.79405835 0.07282128 0.60346367 
    25365 Axis point 0.00000000 246.32151465 272.94625527 
    25366 Rotation angle (degrees) 55.89818138 
    25367 Shift along axis 418.91399034 
    25368  
    25369 
    25370 > select subtract #29
    25371 
    25372 Nothing selected 
    25373 
    25374 > select add #30
    25375 
    25376 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    25377 
    25378 > view matrix models
    25379 > #30,0.97839,-0.18605,-0.090176,357.3,0.005967,0.46138,-0.88718,391.81,0.20667,0.86747,0.45253,164.46
    25380 
    25381 > view matrix models
    25382 > #30,0.97839,-0.18605,-0.090176,357.25,0.005967,0.46138,-0.88718,391.27,0.20667,0.86747,0.45253,153.12
    25383 
    25384 > fitmap #30 inMap #6
    25385 
    25386 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) to map Cage.mrc
    25387 gaussian (#6) using 3000 atoms 
    25388 average map value = 0.009582, steps = 332 
    25389 shifted from previous position = 9.07 
    25390 rotated from previous position = 32.1 degrees 
    25391 atoms outside contour = 1626, contour level = 0.0029 
    25392  
    25393 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) relative to
    25394 Cage.mrc gaussian (#6) coordinates: 
    25395 Matrix rotation and translation 
    25396 0.83681149 -0.36147699 0.41119451 360.83544897 
    25397 0.53272880 0.36436984 -0.76382894 387.06992970 
    25398 0.12627971 0.85823598 0.49747807 160.65068025 
    25399 Axis 0.86556304 0.15203567 0.47716431 
    25400 Axis point 0.00000000 205.96509663 246.21483287 
    25401 Rotation angle (degrees) 69.55367780 
    25402 Shift along axis 447.83103400 
    25403  
    25404 
    25405 > fitmap #30 inMap #6
    25406 
    25407 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) to map Cage.mrc
    25408 gaussian (#6) using 3000 atoms 
    25409 average map value = 0.009584, steps = 44 
    25410 shifted from previous position = 0.0295 
    25411 rotated from previous position = 0.641 degrees 
    25412 atoms outside contour = 1626, contour level = 0.0029 
    25413  
    25414 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#30) relative to
    25415 Cage.mrc gaussian (#6) coordinates: 
    25416 Matrix rotation and translation 
    25417 0.83128043 -0.36359286 0.42044390 360.84323222 
    25418 0.54145412 0.35861978 -0.76040732 387.07745863 
    25419 0.12569918 0.85976281 0.49498246 160.66997286 
    25420 Axis 0.86221528 0.15685600 0.48164407 
    25421 Axis point 0.00000000 206.86543815 241.88919034 
    25422 Rotation angle (degrees) 69.97431665 
    25423 Shift along axis 449.22570860 
    25424  
    25425 
    25426 > select subtract #30
    25427 
    25428 Nothing selected 
    25429 
    25430 > select add #31
    25431 
    25432 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    25433 
    25434 > view matrix models
    25435 > #31,0.97839,-0.18605,-0.090176,333.18,0.005967,0.46138,-0.88718,457.94,0.20667,0.86747,0.45253,182.62
    25436 
    25437 > view matrix models
    25438 > #31,0.97839,-0.18605,-0.090176,313.86,0.005967,0.46138,-0.88718,445.94,0.20667,0.86747,0.45253,147.94
    25439 
    25440 > fitmap #31 inMap #6
    25441 
    25442 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) to map Cage.mrc
    25443 gaussian (#6) using 3000 atoms 
    25444 average map value = 0.01593, steps = 480 
    25445 shifted from previous position = 21.8 
    25446 rotated from previous position = 24 degrees 
    25447 atoms outside contour = 1531, contour level = 0.0029 
    25448  
    25449 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) relative to
    25450 Cage.mrc gaussian (#6) coordinates: 
    25451 Matrix rotation and translation 
    25452 0.95756860 -0.26229008 0.11944153 332.73523687 
    25453 0.27236315 0.68805016 -0.67261081 443.20274564 
    25454 0.09423738 0.67660246 0.73029338 158.21029701 
    25455 Axis 0.92952734 0.01736415 0.36834414 
    25456 Axis point 0.00000000 193.48951283 559.50287744 
    25457 Rotation angle (degrees) 46.53146878 
    25458 Shift along axis 375.25817671 
    25459  
    25460 
    25461 > fitmap #31 inMap #6
    25462 
    25463 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) to map Cage.mrc
    25464 gaussian (#6) using 3000 atoms 
    25465 average map value = 0.01593, steps = 48 
    25466 shifted from previous position = 0.034 
    25467 rotated from previous position = 0.685 degrees 
    25468 atoms outside contour = 1532, contour level = 0.0029 
    25469  
    25470 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) relative to
    25471 Cage.mrc gaussian (#6) coordinates: 
    25472 Matrix rotation and translation 
    25473 0.95461114 -0.26842846 0.12908810 332.73618752 
    25474 0.28320888 0.68376816 -0.67249820 443.21906684 
    25475 0.09225133 0.67853317 0.72875403 158.22434078 
    25476 Axis 0.92550584 0.02523453 0.37789173 
    25477 Axis point 0.00000000 198.34203428 551.57767550 
    25478 Rotation angle (degrees) 46.87701264 
    25479 Shift along axis 378.92538118 
    25480  
    25481 
    25482 > fitmap #31 inMap #6
    25483 
    25484 Fit molecule fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) to map Cage.mrc
    25485 gaussian (#6) using 3000 atoms 
    25486 average map value = 0.01593, steps = 48 
    25487 shifted from previous position = 0.0322 
    25488 rotated from previous position = 0.679 degrees 
    25489 atoms outside contour = 1532, contour level = 0.0029 
    25490  
    25491 Position of fold_2024_08_24_18_52_cj_pilno_model_0.cif (#31) relative to
    25492 Cage.mrc gaussian (#6) coordinates: 
    25493 Matrix rotation and translation 
    25494 0.95152123 -0.27459898 0.13857402 332.73547423 
    25495 0.29399069 0.67949479 -0.67220258 443.23453555 
    25496 0.09042582 0.68035449 0.72728325 158.23565836 
    25497 Axis 0.92136060 0.03279851 0.38732274 
    25498 Axis point 0.00000000 203.12466892 543.86883226 
    25499 Rotation angle (degrees) 47.22277192 
    25500 Shift along axis 382.39505641 
    25501  
    25502 
    25503 > color #23 #72727259 models
    25504 
    25505 > surface dust #23 size 12.6
    25506 
    25507 > volume gaussian #23 sDev 3
    25508 
    25509 Opened 4x-FlgY-PflA.mrc gaussian as #32, grid size 220,250,200, pixel
    25510 2.15,2.15,2.15, shown at step 1, values float32 
    25511 
    25512 > close #32
    25513 
    25514 > volume gaussian #23 sDev 2
    25515 
    25516 Opened 4x-FlgY-PflA.mrc gaussian as #32, grid size 220,250,200, pixel
    25517 2.15,2.15,2.15, shown at step 1, values float32 
    25518 
    25519 > close #24
    25520 
    25521 > surface dust #32 size 50
    25522 
    25523 > color #32 #72727259 models
    25524 
    25525 > show #22 models
    25526 
    25527 > show #20 models
    25528 
    25529 > show #18 models
    25530 
    25531 > show #!19 models
    25532 
    25533 > show #16 models
    25534 
    25535 > split #16
    25536 
    25537 Split FlgY-PflA-PflB-comp (#16) into 35 models 
    25538 Chain information for FlgY-PflA-PflB-comp A #16.1 
    25539 --- 
    25540 Chain | Description 
    25541 A | No description available 
    25542  
    25543 Chain information for FlgY-PflA-PflB-comp B #16.2 
    25544 --- 
    25545 Chain | Description 
    25546 B | No description available 
    25547  
    25548 Chain information for FlgY-PflA-PflB-comp C #16.3 
    25549 --- 
    25550 Chain | Description 
    25551 C | No description available 
    25552  
    25553 Chain information for FlgY-PflA-PflB-comp D #16.4 
    25554 --- 
    25555 Chain | Description 
    25556 D | No description available 
    25557  
    25558 Chain information for FlgY-PflA-PflB-comp E #16.5 
    25559 --- 
    25560 Chain | Description 
    25561 E | No description available 
    25562  
    25563 Chain information for FlgY-PflA-PflB-comp F #16.6 
    25564 --- 
    25565 Chain | Description 
    25566 F | No description available 
    25567  
    25568 Chain information for FlgY-PflA-PflB-comp G #16.7 
    25569 --- 
    25570 Chain | Description 
    25571 G | No description available 
    25572  
    25573 Chain information for FlgY-PflA-PflB-comp H #16.8 
    25574 --- 
    25575 Chain | Description 
    25576 H | No description available 
    25577  
    25578 Chain information for FlgY-PflA-PflB-comp I #16.9 
    25579 --- 
    25580 Chain | Description 
    25581 I | No description available 
    25582  
    25583 Chain information for FlgY-PflA-PflB-comp J #16.10 
    25584 --- 
    25585 Chain | Description 
    25586 J | No description available 
    25587  
    25588 Chain information for FlgY-PflA-PflB-comp K #16.11 
    25589 --- 
    25590 Chain | Description 
    25591 K | No description available 
    25592  
    25593 Chain information for FlgY-PflA-PflB-comp L #16.12 
    25594 --- 
    25595 Chain | Description 
    25596 L | No description available 
    25597  
    25598 Chain information for FlgY-PflA-PflB-comp M #16.13 
    25599 --- 
    25600 Chain | Description 
    25601 M | No description available 
    25602  
    25603 Chain information for FlgY-PflA-PflB-comp N #16.14 
    25604 --- 
    25605 Chain | Description 
    25606 N | No description available 
    25607  
    25608 Chain information for FlgY-PflA-PflB-comp O #16.15 
    25609 --- 
    25610 Chain | Description 
    25611 O | No description available 
    25612  
    25613 Chain information for FlgY-PflA-PflB-comp P #16.16 
    25614 --- 
    25615 Chain | Description 
    25616 P | No description available 
    25617  
    25618 Chain information for FlgY-PflA-PflB-comp Q #16.17 
    25619 --- 
    25620 Chain | Description 
    25621 Q | No description available 
    25622  
    25623 Chain information for FlgY-PflA-PflB-comp R #16.18 
    25624 --- 
    25625 Chain | Description 
    25626 R | No description available 
    25627  
    25628 Chain information for FlgY-PflA-PflB-comp S #16.19 
    25629 --- 
    25630 Chain | Description 
    25631 S | No description available 
    25632  
    25633 Chain information for FlgY-PflA-PflB-comp T #16.20 
    25634 --- 
    25635 Chain | Description 
    25636 T | No description available 
    25637  
    25638 Chain information for FlgY-PflA-PflB-comp U #16.21 
    25639 --- 
    25640 Chain | Description 
    25641 U | No description available 
    25642  
    25643 Chain information for FlgY-PflA-PflB-comp V #16.22 
    25644 --- 
    25645 Chain | Description 
    25646 V | No description available 
    25647  
    25648 Chain information for FlgY-PflA-PflB-comp W #16.23 
    25649 --- 
    25650 Chain | Description 
    25651 W | No description available 
    25652  
    25653 Chain information for FlgY-PflA-PflB-comp X #16.24 
    25654 --- 
    25655 Chain | Description 
    25656 X | No description available 
    25657  
    25658 Chain information for FlgY-PflA-PflB-comp Y #16.25 
    25659 --- 
    25660 Chain | Description 
    25661 Y | No description available 
    25662  
    25663 Chain information for FlgY-PflA-PflB-comp Z #16.26 
    25664 --- 
    25665 Chain | Description 
    25666 Z | No description available 
    25667  
    25668 Chain information for FlgY-PflA-PflB-comp a #16.27 
    25669 --- 
    25670 Chain | Description 
    25671 a | No description available 
    25672  
    25673 Chain information for FlgY-PflA-PflB-comp b #16.28 
    25674 --- 
    25675 Chain | Description 
    25676 b | No description available 
    25677  
    25678 Chain information for FlgY-PflA-PflB-comp c #16.29 
    25679 --- 
    25680 Chain | Description 
    25681 c | No description available 
    25682  
    25683 Chain information for FlgY-PflA-PflB-comp d #16.30 
    25684 --- 
    25685 Chain | Description 
    25686 d | No description available 
    25687  
    25688 Chain information for FlgY-PflA-PflB-comp e #16.31 
    25689 --- 
    25690 Chain | Description 
    25691 e | No description available 
    25692  
    25693 Chain information for FlgY-PflA-PflB-comp f #16.32 
    25694 --- 
    25695 Chain | Description 
    25696 f | No description available 
    25697  
    25698 Chain information for FlgY-PflA-PflB-comp g #16.33 
    25699 --- 
    25700 Chain | Description 
    25701 g | No description available 
    25702  
    25703 Chain information for FlgY-PflA-PflB-comp h #16.34 
    25704 --- 
    25705 Chain | Description 
    25706 h | No description available 
    25707  
    25708 Chain information for FlgY-PflA-PflB-comp i #16.35 
    25709 --- 
    25710 Chain | Description 
    25711 i | No description available 
    25712  
    25713 
    25714 > hide #18 models
    25715 
    25716 > hide #!19 models
    25717 
    25718 > hide #20 models
    25719 
    25720 > hide #22 models
    25721 
    25722 > hide #16.1 models
    25723 
    25724 > show #16.1 models
    25725 
    25726 > show #!10 models
    25727 
    25728 > hide #!10 models
    25729 
    25730 > show #!10 models
    25731 
    25732 > hide #!10 models
    25733 
    25734 > show #!10 models
    25735 
    25736 > hide #!10 models
    25737 
    25738 > show #!5 models
    25739 
    25740 > hide #16.1 models
    25741 
    25742 > show #16.1 models
    25743 
    25744 > hide #16.2 models
    25745 
    25746 > show #16.2 models
    25747 
    25748 > hide #16.2 models
    25749 
    25750 > hide #16.3 models
    25751 
    25752 > show #16.3 models
    25753 
    25754 > hide #16.4 models
    25755 
    25756 > hide #16.5 models
    25757 
    25758 > show #16.5 models
    25759 
    25760 > hide #16.5 models
    25761 
    25762 > hide #16.6 models
    25763 
    25764 > show #16.6 models
    25765 
    25766 > hide #16.6 models
    25767 
    25768 > hide #16.7 models
    25769 
    25770 > show #16.7 models
    25771 
    25772 > hide #16.8 models
    25773 
    25774 > hide #16.9 models
    25775 
    25776 > show #16.9 models
    25777 
    25778 > hide #16.10 models
    25779 
    25780 > show #16.10 models
    25781 
    25782 > hide #16.12 models
    25783 
    25784 > show #16.12 models
    25785 
    25786 > hide #16.13 models
    25787 
    25788 > show #16.13 models
    25789 
    25790 > hide #16.14 models
    25791 
    25792 > show #16.14 models
    25793 
    25794 > hide #16.15 models
    25795 
    25796 > show #16.15 models
    25797 
    25798 > hide #16.16 models
    25799 
    25800 > show #16.16 models
    25801 
    25802 > hide #16.16 models
    25803 
    25804 > hide #16.17 models
    25805 
    25806 > hide #16.18 models
    25807 
    25808 > show #16.18 models
    25809 
    25810 > hide #16.18 models
    25811 
    25812 > hide #16.19 models
    25813 
    25814 > show #16.19 models
    25815 
    25816 > hide #16.20 models
    25817 
    25818 > show #16.20 models
    25819 
    25820 > hide #16.21 models
    25821 
    25822 > show #16.21 models
    25823 
    25824 > hide #16.22 models
    25825 
    25826 > show #16.22 models
    25827 
    25828 > hide #16.23 models
    25829 
    25830 > show #16.23 models
    25831 
    25832 > hide #16.24 models
    25833 
    25834 > show #16.24 models
    25835 
    25836 > hide #16.24 models
    25837 
    25838 > hide #16.25 models
    25839 
    25840 > hide #16.26 models
    25841 
    25842 > hide #16.27 models
    25843 
    25844 > hide #16.28 models
    25845 
    25846 > hide #16.29 models
    25847 
    25848 Drag select of 369 residues 
    25849 
    25850 > hide sel cartoons
    25851 
    25852 > show sel cartoons
    25853 
    25854 > select clear
    25855 
    25856 Drag select of 314 residues 
    25857 
    25858 > hide sel cartoons
    25859 
    25860 Drag select of 42 residues 
    25861 
    25862 > hide sel cartoons
    25863 
    25864 Drag select of 3 residues 
    25865 Drag select of 75 residues 
    25866 
    25867 > hide sel cartoons
    25868 
    25869 Drag select of 5 PflB-cage.mrc gaussian , 12 residues 
    25870 
    25871 > hide sel cartoons
    25872 
    25873 Drag select of 10 residues 
    25874 
    25875 > hide sel cartoons
    25876 
    25877 > select add #16.1/A:318
    25878 
    25879 3679 atoms, 6 bonds, 457 residues, 1 model selected 
    25880 
    25881 > select add #16.1/A:347
    25882 
    25883 3687 atoms, 13 bonds, 458 residues, 1 model selected 
    25884 
    25885 > select add #16.1/A:346
    25886 
    25887 3695 atoms, 20 bonds, 459 residues, 1 model selected 
    25888 
    25889 > select add #16.1/A:345
    25890 
    25891 3703 atoms, 27 bonds, 460 residues, 1 model selected 
    25892 
    25893 > select add #16.1/A:309
    25894 
    25895 3711 atoms, 34 bonds, 461 residues, 1 model selected 
    25896 
    25897 > hide sel cartoons
    25898 
    25899 > select add #16.1/A:780
    25900 
    25901 3722 atoms, 45 bonds, 462 residues, 1 model selected 
    25902 
    25903 > hide sel cartoons
    25904 
    25905 > hide #!5 models
    25906 
    25907 Drag select of 12 residues 
    25908 
    25909 > hide sel cartoons
    25910 
    25911 > select add #16.1
    25912 
    25913 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    25914 
    25915 > select subtract #16.1
    25916 
    25917 Nothing selected 
    25918 
    25919 > select add #16.1
    25920 
    25921 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    25922 
    25923 > show sel cartoons
    25924 
    25925 > select clear
    25926 
    25927 > show #!5 models
    25928 
    25929 > show #!8 models
    25930 
    25931 > color #8 #72727259 models
    25932 
    25933 > show #!19 models
    25934 
    25935 > color #19 #5da36dff models
    25936 
    25937 > select add #16.35
    25938 
    25939 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    25940 
    25941 > select add #16.33
    25942 
    25943 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    25944 
    25945 > select add #16.31
    25946 
    25947 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    25948 
    25949 > select add #16.3
    25950 
    25951 4584 atoms, 4617 bonds, 574 residues, 4 models selected 
    25952 
    25953 > select subtract #16.3
    25954 
    25955 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    25956 
    25957 > select add #16.7
    25958 
    25959 9160 atoms, 9276 bonds, 1143 residues, 4 models selected 
    25960 
    25961 > select subtract #16.7
    25962 
    25963 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    25964 
    25965 > select add #16.23
    25966 
    25967 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    25968 
    25969 > color sel magenta
    25970 
    25971 The cached device pixel ratio value was stale on window expose. Please file a
    25972 QTBUG which explains how to reproduce. 
    25973 
    25974 > select clear
    25975 
    25976 > select add #16.22
    25977 
    25978 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    25979 
    25980 > select add #16.30
    25981 
    25982 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    25983 
    25984 > select add #16.32
    25985 
    25986 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    25987 
    25988 > select add #16.34
    25989 
    25990 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    25991 
    25992 > color sel #e9cdeaff
    25993 
    25994 > select clear
    25995 
    25996 > select add #16.31
    25997 
    25998 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    25999 
    26000 > select add #16.33
    26001 
    26002 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    26003 
    26004 > select add #16.35
    26005 
    26006 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    26007 
    26008 > select add #16.23
    26009 
    26010 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    26011 
    26012 > color sel orchid models.
    26013 
    26014 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    26015 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    26016 
    26017 > color sel orchid models.
    26018 
    26019 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    26020 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    26021 
    26022 > color sel orchid models.
    26023 
    26024 Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
    26025 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword 
    26026 
    26027 > color sel orchid models
    26028 
    26029 > select clear
    26030 
    26031 > select add #16.19
    26032 
    26033 5071 atoms, 5156 bonds, 621 residues, 1 model selected 
    26034 
    26035 > select add #16.20
    26036 
    26037 10142 atoms, 10312 bonds, 1242 residues, 2 models selected 
    26038 
    26039 > select add #16.21
    26040 
    26041 15213 atoms, 15468 bonds, 1863 residues, 3 models selected 
    26042 
    26043 > select add #16.15
    26044 
    26045 20284 atoms, 20624 bonds, 2484 residues, 4 models selected 
    26046 
    26047 > color sel #ca4949ff
    26048 
    26049 > select clear
    26050 
    26051 > select add #16.9
    26052 
    26053 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    26054 
    26055 > select subtract #16.9
    26056 
    26057 Nothing selected 
    26058 
    26059 > select add #16.10
    26060 
    26061 879 atoms, 894 bonds, 109 residues, 1 model selected 
    26062 
    26063 > select add #16.11
    26064 
    26065 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    26066 
    26067 > select subtract #16.11
    26068 
    26069 879 atoms, 894 bonds, 109 residues, 1 model selected 
    26070 
    26071 > select add #16.12
    26072 
    26073 1758 atoms, 1788 bonds, 218 residues, 2 models selected 
    26074 
    26075 > select add #16.13
    26076 
    26077 7213 atoms, 7341 bonds, 896 residues, 3 models selected 
    26078 
    26079 > select subtract #16.13
    26080 
    26081 1758 atoms, 1788 bonds, 218 residues, 2 models selected 
    26082 
    26083 > select add #16.14
    26084 
    26085 2637 atoms, 2682 bonds, 327 residues, 3 models selected 
    26086 
    26087 > select add #16.3
    26088 
    26089 3516 atoms, 3576 bonds, 436 residues, 4 models selected 
    26090 
    26091 > color sel #ca4949ff
    26092 
    26093 > select subtract #16.3
    26094 
    26095 2637 atoms, 2682 bonds, 327 residues, 3 models selected 
    26096 
    26097 > select subtract #16.10
    26098 
    26099 1758 atoms, 1788 bonds, 218 residues, 2 models selected 
    26100 
    26101 > select subtract #16.12
    26102 
    26103 879 atoms, 894 bonds, 109 residues, 1 model selected 
    26104 
    26105 > select add #16.1
    26106 
    26107 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    26108 
    26109 > select subtract #16.14
    26110 
    26111 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    26112 
    26113 > select add #16.9
    26114 
    26115 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    26116 
    26117 > select subtract #16.9
    26118 
    26119 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    26120 
    26121 > select add #16.10
    26122 
    26123 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    26124 
    26125 > select subtract #16.10
    26126 
    26127 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    26128 
    26129 > select add #16.11
    26130 
    26131 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    26132 
    26133 > select subtract #16.11
    26134 
    26135 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    26136 
    26137 > select add #16.11
    26138 
    26139 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    26140 
    26141 > select add #16.7
    26142 
    26143 16365 atoms, 16659 bonds, 2034 residues, 3 models selected 
    26144 
    26145 > color sel #8c3092ff
    26146 
    26147 > select add #16.9
    26148 
    26149 21820 atoms, 22212 bonds, 2712 residues, 4 models selected 
    26150 
    26151 > select clear
    26152 
    26153 > select add #16.9
    26154 
    26155 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    26156 
    26157 > select add #16.13
    26158 
    26159 10910 atoms, 11106 bonds, 1356 residues, 2 models selected 
    26160 
    26161 > color sel magenta
    26162 
    26163 > select clear
    26164 
    26165 > select add #25
    26166 
    26167 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    26168 
    26169 > select add #26
    26170 
    26171 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    26172 
    26173 > select add #27
    26174 
    26175 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    26176 
    26177 > select add #28
    26178 
    26179 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    26180 
    26181 > select add #29
    26182 
    26183 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    26184 
    26185 > select add #30
    26186 
    26187 18000 atoms, 18306 bonds, 2184 residues, 6 models selected 
    26188 
    26189 > select add #31
    26190 
    26191 21000 atoms, 21357 bonds, 2548 residues, 7 models selected 
    26192 
    26193 > color sel #4a9ed2ff
    26194 
    26195 > ui tool show "Side View"
    26196 
    26197 > color sel #52cdd6ff
    26198 
    26199 > color sel #4a9ed2ff
    26200 
    26201 > select clear
    26202 
    26203 > select add #25
    26204 
    26205 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    26206 
    26207 > select add #26
    26208 
    26209 6000 atoms, 6102 bonds, 728 residues, 2 models selected 
    26210 
    26211 > select add #27
    26212 
    26213 9000 atoms, 9153 bonds, 1092 residues, 3 models selected 
    26214 
    26215 > select add #28
    26216 
    26217 12000 atoms, 12204 bonds, 1456 residues, 4 models selected 
    26218 
    26219 > select add #29
    26220 
    26221 15000 atoms, 15255 bonds, 1820 residues, 5 models selected 
    26222 
    26223 > select add #30
    26224 
    26225 18000 atoms, 18306 bonds, 2184 residues, 6 models selected 
    26226 
    26227 > select add #31
    26228 
    26229 21000 atoms, 21357 bonds, 2548 residues, 7 models selected 
    26230 Alignment identifier is 1 
    26231 Alignment identifier is 2 
    26232 
    26233 > select #25/A:175 #26/A:175 #27/A:175 #28/A:175 #29/A:175 #30/A:175 #31/A:175
    26234 
    26235 84 atoms, 77 bonds, 7 residues, 7 models selected 
    26236 
    26237 > select #25/A:167-175 #26/A:167-175 #27/A:167-175 #28/A:167-175 #29/A:167-175
    26238 > #30/A:167-175 #31/A:167-175
    26239 
    26240 483 atoms, 483 bonds, 63 residues, 7 models selected 
    26241 . [ID: 1] region 7 chains [167-175] RMSD: 212.124 
    26242  
    26243 
    26244 > select #25/B:1 #26/B:1 #27/B:1 #28/B:1 #29/B:1 #30/B:1 #31/B:1
    26245 
    26246 56 atoms, 49 bonds, 7 residues, 7 models selected 
    26247 
    26248 > select #25/B:1-20 #26/B:1-20 #27/B:1-20 #28/B:1-20 #29/B:1-20 #30/B:1-20
    26249 > #31/B:1-20
    26250 
    26251 1099 atoms, 1099 bonds, 140 residues, 7 models selected 
    26252 . [ID: 2] region 7 chains [1-20] RMSD: 202.239 
    26253  
    26254 
    26255 > select #25/B:27 #26/B:27 #27/B:27 #28/B:27 #29/B:27 #30/B:27 #31/B:27
    26256 
    26257 56 atoms, 49 bonds, 7 residues, 7 models selected 
    26258 
    26259 > select #25/B:1-27 #26/B:1-27 #27/B:1-27 #28/B:1-27 #29/B:1-27 #30/B:1-27
    26260 > #31/B:1-27
    26261 
    26262 1498 atoms, 1498 bonds, 189 residues, 7 models selected 
    26263 . [ID: 2] region 7 chains [1-27] RMSD: 201.751 
    26264  
    26265 
    26266 > hide sel surfaces
    26267 
    26268 > hide sel cartoons
    26269 
    26270 > select #25/B:28 #26/B:28 #27/B:28 #28/B:28 #29/B:28 #30/B:28 #31/B:28
    26271 
    26272 56 atoms, 49 bonds, 7 residues, 7 models selected 
    26273 
    26274 > select #25/B:28-189 #26/B:28-189 #27/B:28-189 #28/B:28-189 #29/B:28-189
    26275 > #30/B:28-189 #31/B:28-189
    26276 
    26277 9296 atoms, 9436 bonds, 1134 residues, 7 models selected 
    26278 . [ID: 2] region 7 chains [28-189] RMSD: 205.519 
    26279  
    26280 
    26281 > select #25/A:1 #26/A:1 #27/A:1 #28/A:1 #29/A:1 #30/A:1 #31/A:1
    26282 
    26283 56 atoms, 49 bonds, 7 residues, 7 models selected 
    26284 
    26285 > select #25/A #26/A #27/A #28/A #29/A #30/A #31/A
    26286 
    26287 10206 atoms, 10416 bonds, 1225 residues, 7 models selected 
    26288 . [ID: 1] region 7 chains [1-175] RMSD: 207.285 
    26289  
    26290 
    26291 > show sel surfaces
    26292 
    26293 > select clear
    26294 
    26295 > select add #19
    26296 
    26297 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    26298 
    26299 > show #!2 models
    26300 
    26301 > select clear
    26302 
    26303 > view orient
    26304 
    26305 Drag select of 8 MS-ring.mrc gaussian , 6282 residues, 19 pseudobonds, 32
    26306 4x-FlgY-PflA.mrc gaussian 
    26307 
    26308 > hide sel cartoons
    26309 
    26310 Drag select of 8 residues 
    26311 
    26312 > hide sel cartoons
    26313 
    26314 > select clear
    26315 
    26316 > volume gaussian #1.1 sDev 5
    26317 
    26318 Opened IM.mrc gaussian as #24, grid size 220,250,200, pixel 2.15,2.15,2.15,
    26319 shown at step 1, values float32 
    26320 
    26321 > hide #!2 models
    26322 
    26323 > volume #24 level 0.006253
    26324 
    26325 > color #24 #797979ff models
    26326 
    26327 > color #24 #5e5e5eff models
    26328 
    26329 > color #24 #919191ff models
    26330 
    26331 > color #24 #797979ff models
    26332 
    26333 > color #24 darkgrey models
    26334 
    26335 > color #24 #424242ff models
    26336 
    26337 > color #24 #797979ff models
    26338 
    26339 > color #24 #d6d6d6ff models
    26340 
    26341 > color #24 #919191ff models
    26342 
    26343 > select add #19
    26344 
    26345 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    26346 
    26347 > show sel surfaces
    26348 
    26349 > select clear
    26350 
    26351 > view orient
    26352 
    26353 Drag select of Hp-FliF-comp_0 SES surface, 166552 of 308174 triangles, Hp-
    26354 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    26355 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, Hp-FliF-
    26356 comp_6 SES surface, Hp-FliF-comp_7 SES surface, 301470 of 307576 triangles,
    26357 Hp-FliF-comp_8 SES surface, 281198 of 307462 triangles, Hp-FliF-comp_9 SES
    26358 surface, 248114 of 307956 triangles, Hp-FliF-comp_AA SES surface, 72054 of
    26359 307878 triangles, Hp-FliF-comp_AP SES surface, 860 of 308526 triangles, Hp-
    26360 FliF-comp_AQ SES surface, 11313 of 307878 triangles, Hp-FliF-comp_AR SES
    26361 surface, 26305 of 308154 triangles, Hp-FliF-comp_AS SES surface, 45567 of
    26362 307454 triangles, Hp-FliF-comp_B SES surface, 22032 of 102586 triangles, Hp-
    26363 FliF-comp_C SES surface, Hp-FliF-comp_D SES surface, Hp-FliF-comp_E SES
    26364 surface, Hp-FliF-comp_F SES surface, Hp-FliF-comp_G SES surface, Hp-FliF-
    26365 comp_H SES surface, Hp-FliF-comp_I SES surface, Hp-FliF-comp_J SES surface,
    26366 Hp-FliF-comp_K SES surface, 49177 of 102380 triangles, Hp-FliF-comp_V SES
    26367 surface, 47719 of 126200 triangles, Hp-FliF-comp_W SES surface, Hp-FliF-comp_X
    26368 SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES surface, Hp-FliF-
    26369 comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-comp_c SES surface,
    26370 Hp-FliF-comp_d SES surface, 121510 of 126402 triangles, Hp-FliF-comp_e SES
    26371 surface, 62271 of 126996 triangles, Hp-FliF-comp_f SES surface, 3912 of 126310
    26372 triangles, Hp-FliF-comp_q SES surface, 66882 of 307794 triangles, Hp-FliF-
    26373 comp_r SES surface, 140106 of 308144 triangles, Hp-FliF-comp_s SES surface,
    26374 221141 of 307492 triangles, Hp-FliF-comp_t SES surface, 307651 of 308006
    26375 triangles, Hp-FliF-comp_u SES surface, Hp-FliF-comp_v SES surface, Hp-FliF-
    26376 comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-comp_y SES surface,
    26377 Hp-FliF-comp_z SES surface, 8 MS-ring.mrc gaussian , 172 residues, 32 4x-FlgY-
    26378 PflA.mrc gaussian 
    26379 
    26380 > hide sel surfaces
    26381 
    26382 [Repeated 1 time(s)]
    26383 
    26384 > select clear
    26385 
    26386 Drag select of Hp-FliF-comp_0 SES surface, 154076 of 308174 triangles, Hp-
    26387 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    26388 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, Hp-FliF-
    26389 comp_6 SES surface, 308144 of 308152 triangles, Hp-FliF-comp_7 SES surface,
    26390 295307 of 307576 triangles, Hp-FliF-comp_8 SES surface, 272973 of 307462
    26391 triangles, Hp-FliF-comp_9 SES surface, 235380 of 307956 triangles, Hp-FliF-
    26392 comp_AA SES surface, 53451 of 307878 triangles, Hp-FliF-comp_AP SES surface,
    26393 482 of 308526 triangles, Hp-FliF-comp_AQ SES surface, 8117 of 307878
    26394 triangles, Hp-FliF-comp_AR SES surface, 22368 of 308154 triangles, Hp-FliF-
    26395 comp_AS SES surface, 41356 of 307454 triangles, Hp-FliF-comp_B SES surface,
    26396 17461 of 102586 triangles, Hp-FliF-comp_C SES surface, Hp-FliF-comp_D SES
    26397 surface, Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES surface, Hp-FliF-
    26398 comp_G SES surface, Hp-FliF-comp_H SES surface, Hp-FliF-comp_I SES surface,
    26399 Hp-FliF-comp_J SES surface, 102531 of 102648 triangles, Hp-FliF-comp_K SES
    26400 surface, 39861 of 102380 triangles, Hp-FliF-comp_V SES surface, 34776 of
    26401 126200 triangles, Hp-FliF-comp_W SES surface, 126738 of 126760 triangles, Hp-
    26402 FliF-comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES
    26403 surface, Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-
    26404 comp_c SES surface, Hp-FliF-comp_d SES surface, 117758 of 126402 triangles,
    26405 Hp-FliF-comp_e SES surface, 55739 of 126996 triangles, Hp-FliF-comp_f SES
    26406 surface, 1108 of 126310 triangles, Hp-FliF-comp_q SES surface, 60184 of 307794
    26407 triangles, Hp-FliF-comp_r SES surface, 120961 of 308144 triangles, Hp-FliF-
    26408 comp_s SES surface, 209518 of 307492 triangles, Hp-FliF-comp_t SES surface,
    26409 306665 of 308006 triangles, Hp-FliF-comp_u SES surface, Hp-FliF-comp_v SES
    26410 surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-
    26411 comp_y SES surface, Hp-FliF-comp_z SES surface, 8 MS-ring.mrc gaussian , 103
    26412 residues, 32 4x-FlgY-PflA.mrc gaussian 
    26413 
    26414 > select clear
    26415 
    26416 > view orient
    26417 
    26418 > turn x 90
    26419 
    26420 [Repeated 2 time(s)]
    26421 
    26422 > undo
    26423 
    26424 [Repeated 1 time(s)]
    26425 
    26426 > turn x 90
    26427 
    26428 [Repeated 1 time(s)]Drag select of Hp-FliF-comp_0 SES surface, 149331 of
    26429 308174 triangles, Hp-FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-
    26430 FliF-comp_3 SES surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES
    26431 surface, 302887 of 307026 triangles, Hp-FliF-comp_6 SES surface, 292299 of
    26432 308152 triangles, Hp-FliF-comp_7 SES surface, 274500 of 307576 triangles, Hp-
    26433 FliF-comp_8 SES surface, 254402 of 307462 triangles, Hp-FliF-comp_9 SES
    26434 surface, 213499 of 307956 triangles, Hp-FliF-comp_AA SES surface, 71335 of
    26435 307878 triangles, Hp-FliF-comp_AS SES surface, 2423 of 307454 triangles, Hp-
    26436 FliF-comp_C SES surface, 83086 of 102940 triangles, Hp-FliF-comp_D SES
    26437 surface, Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES surface, Hp-FliF-
    26438 comp_G SES surface, Hp-FliF-comp_H SES surface, Hp-FliF-comp_I SES surface,
    26439 Hp-FliF-comp_J SES surface, Hp-FliF-comp_K SES surface, 52860 of 102380
    26440 triangles, Hp-FliF-comp_W SES surface, 77317 of 126760 triangles, Hp-FliF-
    26441 comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES surface,
    26442 Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-comp_c SES
    26443 surface, 126547 of 126700 triangles, Hp-FliF-comp_d SES surface, 110830 of
    26444 126402 triangles, Hp-FliF-comp_e SES surface, 52984 of 126996 triangles, Hp-
    26445 FliF-comp_f SES surface, 494 of 126310 triangles, Hp-FliF-comp_q SES surface,
    26446 16449 of 307794 triangles, Hp-FliF-comp_r SES surface, 43873 of 308144
    26447 triangles, Hp-FliF-comp_s SES surface, 106026 of 307492 triangles, Hp-FliF-
    26448 comp_t SES surface, 221057 of 308006 triangles, Hp-FliF-comp_u SES surface,
    26449 Hp-FliF-comp_v SES surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES
    26450 surface, Hp-FliF-comp_y SES surface, Hp-FliF-comp_z SES surface, 8 MS-ring.mrc
    26451 gaussian , 41 residues, 24 IM.mrc gaussian 
    26452 Drag select of Hp-FliF-comp_1 SES surface, 55583 of 307826 triangles, Hp-FliF-
    26453 comp_2 SES surface, 66829 of 307256 triangles, Hp-FliF-comp_3 SES surface,
    26454 69397 of 307570 triangles, Hp-FliF-comp_4 SES surface, 66274 of 308450
    26455 triangles, Hp-FliF-comp_5 SES surface, 54668 of 307026 triangles, Hp-FliF-
    26456 comp_6 SES surface, 34167 of 308152 triangles, Hp-FliF-comp_7 SES surface,
    26457 10791 of 307576 triangles, Hp-FliF-comp_y SES surface, 732 of 306240
    26458 triangles, Hp-FliF-comp_z SES surface, 28688 of 307204 triangles 
    26459 
    26460 > select clear
    26461 
    26462 Drag select of Hp-FliF-comp_0 SES surface, 83311 of 308174 triangles, Hp-FliF-
    26463 comp_1 SES surface, 306551 of 307826 triangles, Hp-FliF-comp_2 SES surface,
    26464 300559 of 307256 triangles, Hp-FliF-comp_3 SES surface, 291476 of 307570
    26465 triangles, Hp-FliF-comp_4 SES surface, 281658 of 308450 triangles, Hp-FliF-
    26466 comp_5 SES surface, 265641 of 307026 triangles, Hp-FliF-comp_6 SES surface,
    26467 253115 of 308152 triangles, Hp-FliF-comp_7 SES surface, 219184 of 307576
    26468 triangles, Hp-FliF-comp_8 SES surface, 182124 of 307462 triangles, Hp-FliF-
    26469 comp_9 SES surface, 139238 of 307956 triangles, Hp-FliF-comp_AA SES surface,
    26470 64 of 307878 triangles, Hp-FliF-comp_D SES surface, 79118 of 102534 triangles,
    26471 Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES surface, Hp-FliF-comp_G SES
    26472 surface, Hp-FliF-comp_H SES surface, Hp-FliF-comp_I SES surface, 99609 of
    26473 102666 triangles, Hp-FliF-comp_J SES surface, 63093 of 102648 triangles, Hp-
    26474 FliF-comp_X SES surface, 35929 of 127586 triangles, Hp-FliF-comp_Y SES
    26475 surface, 115109 of 125848 triangles, Hp-FliF-comp_Z SES surface, 125524 of
    26476 126584 triangles, Hp-FliF-comp_a SES surface, 124149 of 126398 triangles, Hp-
    26477 FliF-comp_b SES surface, 113214 of 126186 triangles, Hp-FliF-comp_c SES
    26478 surface, 84162 of 126700 triangles, Hp-FliF-comp_d SES surface, 46299 of
    26479 126402 triangles, Hp-FliF-comp_e SES surface, 2181 of 126996 triangles, Hp-
    26480 FliF-comp_s SES surface, 1749 of 307492 triangles, Hp-FliF-comp_t SES surface,
    26481 21680 of 308006 triangles, Hp-FliF-comp_u SES surface, 143651 of 308588
    26482 triangles, Hp-FliF-comp_v SES surface, 300723 of 308590 triangles, Hp-FliF-
    26483 comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-comp_y SES surface,
    26484 Hp-FliF-comp_z SES surface, 307180 of 307204 triangles 
    26485 
    26486 > select add #19
    26487 
    26488 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 36 models selected 
    26489 
    26490 > volume #!5-6,8,24,32 showOutlineBox true
    26491 
    26492 > view orient
    26493 
    26494 > ui mousemode right "crop volume"
    26495 
    26496 > volume #!5-6,8,24,32 showOutlineBox false
    26497 
    26498 > select clear
    26499 
    26500 > hide #!24 models
    26501 
    26502 > hide #!25 models
    26503 
    26504 > hide #!26 models
    26505 
    26506 > hide #!27 models
    26507 
    26508 > hide #!28 models
    26509 
    26510 > hide #!29 models
    26511 
    26512 > hide #!30 models
    26513 
    26514 > hide #!31 models
    26515 
    26516 > hide #!32 models
    26517 
    26518 > hide #!16 models
    26519 
    26520 > hide #!5 models
    26521 
    26522 > hide #!6 models
    26523 
    26524 > view orient
    26525 
    26526 Drag select of Hp-FliF-comp_0 SES surface, 143157 of 308174 triangles, Hp-
    26527 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    26528 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, 306617 of
    26529 307026 triangles, Hp-FliF-comp_6 SES surface, 297776 of 308152 triangles, Hp-
    26530 FliF-comp_7 SES surface, 279954 of 307576 triangles, Hp-FliF-comp_8 SES
    26531 surface, 256577 of 307462 triangles, Hp-FliF-comp_9 SES surface, 214640 of
    26532 307956 triangles, Hp-FliF-comp_AA SES surface, 53365 of 307878 triangles, Hp-
    26533 FliF-comp_AQ SES surface, 74 of 307878 triangles, Hp-FliF-comp_AR SES surface,
    26534 7294 of 308154 triangles, Hp-FliF-comp_AS SES surface, 25284 of 307454
    26535 triangles, Hp-FliF-comp_B SES surface, 20152 of 102586 triangles, Hp-FliF-
    26536 comp_C SES surface, Hp-FliF-comp_D SES surface, Hp-FliF-comp_E SES surface,
    26537 Hp-FliF-comp_F SES surface, Hp-FliF-comp_G SES surface, Hp-FliF-comp_H SES
    26538 surface, Hp-FliF-comp_I SES surface, Hp-FliF-comp_J SES surface, Hp-FliF-
    26539 comp_K SES surface, 48901 of 102380 triangles, Hp-FliF-comp_V SES surface,
    26540 29501 of 126200 triangles, Hp-FliF-comp_W SES surface, 125127 of 126760
    26541 triangles, Hp-FliF-comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-
    26542 comp_Z SES surface, Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface,
    26543 Hp-FliF-comp_c SES surface, Hp-FliF-comp_d SES surface, 115537 of 126402
    26544 triangles, Hp-FliF-comp_e SES surface, 53093 of 126996 triangles, Hp-FliF-
    26545 comp_q SES surface, 49856 of 307794 triangles, Hp-FliF-comp_r SES surface,
    26546 100944 of 308144 triangles, Hp-FliF-comp_s SES surface, 199515 of 307492
    26547 triangles, Hp-FliF-comp_t SES surface, Hp-FliF-comp_u SES surface, Hp-FliF-
    26548 comp_v SES surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES surface,
    26549 Hp-FliF-comp_y SES surface, Hp-FliF-comp_z SES surface, 23 residues 
    26550 
    26551 > select add #19
    26552 
    26553 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 5 models selected 
    26554 
    26555 > select subtract #19
    26556 
    26557 81 models selected 
    26558 
    26559 > select add #19
    26560 
    26561 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    26562 
    26563 > select subtract #19
    26564 
    26565 81 models selected 
    26566 Drag select of Hp-FliF-comp_0 SES surface, 148981 of 308174 triangles, Hp-
    26567 FliF-comp_1 SES surface, Hp-FliF-comp_2 SES surface, Hp-FliF-comp_3 SES
    26568 surface, Hp-FliF-comp_4 SES surface, Hp-FliF-comp_5 SES surface, Hp-FliF-
    26569 comp_6 SES surface, 300852 of 308152 triangles, Hp-FliF-comp_7 SES surface,
    26570 284597 of 307576 triangles, Hp-FliF-comp_8 SES surface, 261021 of 307462
    26571 triangles, Hp-FliF-comp_9 SES surface, 226705 of 307956 triangles, Hp-FliF-
    26572 comp_AA SES surface, 63490 of 307878 triangles, Hp-FliF-comp_AQ SES surface,
    26573 600 of 307878 triangles, Hp-FliF-comp_AR SES surface, 10882 of 308154
    26574 triangles, Hp-FliF-comp_AS SES surface, 30600 of 307454 triangles, Hp-FliF-
    26575 comp_B SES surface, 25923 of 102586 triangles, Hp-FliF-comp_C SES surface, Hp-
    26576 FliF-comp_D SES surface, Hp-FliF-comp_E SES surface, Hp-FliF-comp_F SES
    26577 surface, Hp-FliF-comp_G SES surface, Hp-FliF-comp_H SES surface, Hp-FliF-
    26578 comp_I SES surface, Hp-FliF-comp_J SES surface, Hp-FliF-comp_K SES surface,
    26579 54434 of 102380 triangles, Hp-FliF-comp_V SES surface, 38106 of 126200
    26580 triangles, Hp-FliF-comp_W SES surface, 126732 of 126760 triangles, Hp-FliF-
    26581 comp_X SES surface, Hp-FliF-comp_Y SES surface, Hp-FliF-comp_Z SES surface,
    26582 Hp-FliF-comp_a SES surface, Hp-FliF-comp_b SES surface, Hp-FliF-comp_c SES
    26583 surface, Hp-FliF-comp_d SES surface, 118350 of 126402 triangles, Hp-FliF-
    26584 comp_e SES surface, 57474 of 126996 triangles, Hp-FliF-comp_f SES surface,
    26585 1323 of 126310 triangles, Hp-FliF-comp_q SES surface, 54683 of 307794
    26586 triangles, Hp-FliF-comp_r SES surface, 112699 of 308144 triangles, Hp-FliF-
    26587 comp_s SES surface, 208916 of 307492 triangles, Hp-FliF-comp_t SES surface,
    26588 308000 of 308006 triangles, Hp-FliF-comp_u SES surface, Hp-FliF-comp_v SES
    26589 surface, Hp-FliF-comp_w SES surface, Hp-FliF-comp_x SES surface, Hp-FliF-
    26590 comp_y SES surface, Hp-FliF-comp_z SES surface, 67 residues 
    26591 
    26592 > hide sel surfaces
    26593 
    26594 [Repeated 1 time(s)]
    26595 
    26596 > select clear
    26597 
    26598 > select add #19
    26599 
    26600 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 2 models selected 
    26601 
    26602 > hide sel surfaces
    26603 
    26604 > hide sel cartoons
    26605 
    26606 > show sel cartoons
    26607 
    26608 > select clear
    26609 
    26610 Drag select of 8 MS-ring.mrc gaussian , 7753 residues, 20 pseudobonds 
    26611 
    26612 > hide #19.33 models
    26613 
    26614 > hide #19.34 models
    26615 
    26616 > hide #19.35 models
    26617 
    26618 > hide #19.36 models
    26619 
    26620 > hide #19.37 models
    26621 
    26622 > hide #19.38 models
    26623 
    26624 > hide #19.39 models
    26625 
    26626 > hide #19.40 models
    26627 
    26628 > hide #19.53 models
    26629 
    26630 > hide #19.54 models
    26631 
    26632 > hide #19.55 models
    26633 
    26634 > hide #19.56 models
    26635 
    26636 > hide #19.57 models
    26637 
    26638 > hide #19.58 models
    26639 
    26640 > hide #19.59 models
    26641 
    26642 > hide #19.76 models
    26643 
    26644 > hide #19.77 models
    26645 
    26646 > hide #19.78 models
    26647 
    26648 > hide #19.79 models
    26649 
    26650 > hide #19.80 models
    26651 
    26652 > hide #19.81 models
    26653 
    26654 > hide #19.82 models
    26655 
    26656 > hide sel cartoons
    26657 
    26658 [Repeated 1 time(s)]
    26659 
    26660 > show sel cartoons
    26661 
    26662 > show sel surfaces
    26663 
    26664 > select add #19
    26665 
    26666 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 58 models selected 
    26667 
    26668 > select subtract #19.1
    26669 
    26670 112125 atoms, 113781 bonds, 14157 residues, 84 models selected 
    26671 
    26672 > select add #19
    26673 
    26674 112125 atoms, 113781 bonds, 39 pseudobonds, 14157 residues, 85 models selected 
    26675 
    26676 > hide sel cartoons
    26677 
    26678 > select clear
    26679 
    26680 > show #!25 models
    26681 
    26682 > show #!26 models
    26683 
    26684 > show #!27 models
    26685 
    26686 > show #!28 models
    26687 
    26688 > show #!29 models
    26689 
    26690 > show #!30 models
    26691 
    26692 > show #!31 models
    26693 
    26694 Cell requested for row 125 is out of bounds for table with 131 rows! Resizing
    26695 table model. 
    26696 
    26697 > select add #25
    26698 
    26699 3000 atoms, 3051 bonds, 364 residues, 1 model selected 
    26700 
    26701 > select add #26
    26702 
    26703 6000 atoms, 6102 bonds, 728 residues, 3 models selected 
    26704 
    26705 > select add #27
    26706 
    26707 9000 atoms, 9153 bonds, 1092 residues, 5 models selected 
    26708 
    26709 > select add #28
    26710 
    26711 12000 atoms, 12204 bonds, 1456 residues, 7 models selected 
    26712 
    26713 > select add #29
    26714 
    26715 15000 atoms, 15255 bonds, 1820 residues, 9 models selected 
    26716 
    26717 > select add #30
    26718 
    26719 18000 atoms, 18306 bonds, 2184 residues, 11 models selected 
    26720 
    26721 > select add #31
    26722 
    26723 21000 atoms, 21357 bonds, 2548 residues, 13 models selected 
    26724 Alignment identifier is 1 
    26725 Alignment identifier is 2 
    26726 
    26727 > hide sel surfaces
    26728 
    26729 > show sel surfaces
    26730 
    26731 > hide sel cartoons
    26732 
    26733 The cached device pixel ratio value was stale on window expose. Please file a
    26734 QTBUG which explains how to reproduce. 
    26735 
    26736 > select clear
    26737 
    26738 > select #25/A:1 #26/A:1 #27/A:1 #28/A:1 #29/A:1 #30/A:1 #31/A:1
    26739 
    26740 56 atoms, 49 bonds, 7 residues, 7 models selected 
    26741 
    26742 > select #25/A:1-5 #26/A:1-5 #27/A:1-5 #28/A:1-5 #29/A:1-5 #30/A:1-5 #31/A:1-5
    26743 
    26744 308 atoms, 315 bonds, 35 residues, 7 models selected 
    26745 . [ID: 1] region 7 chains [1-5] RMSD: 190.059 
    26746  
    26747 
    26748 > select #25/B:1 #26/B:1 #27/B:1 #28/B:1 #29/B:1 #30/B:1 #31/B:1
    26749 
    26750 56 atoms, 49 bonds, 7 residues, 7 models selected 
    26751 
    26752 > select #25/B:1-27 #26/B:1-27 #27/B:1-27 #28/B:1-27 #29/B:1-27 #30/B:1-27
    26753 > #31/B:1-27
    26754 
    26755 1498 atoms, 1498 bonds, 189 residues, 7 models selected 
    26756 . [ID: 2] region 7 chains [1-27] RMSD: 201.751 
    26757  
    26758 
    26759 > hide sel surfaces
    26760 
    26761 > select clear
    26762 
    26763 > show #18 models
    26764 
    26765 > show #20 models
    26766 
    26767 > show #22 models
    26768 
    26769 Alignment identifier is 1 
    26770 Alignment identifier is 2 
    26771 Alignment identifier is 3 
    26772 Alignment identifier is 4 
    26773 Alignment identifier is 5 
    26774 Alignment identifier is 6 
    26775 Alignment identifier is 7 
    26776 Alignment identifier is 8 
    26777 Alignment identifier is 9 
    26778 Alignment identifier is 10 
    26779 Alignment identifier is 11 
    26780 
    26781 > select #20/A,L-T:52 #18/A,L-T:52 #22/A,L-T:52
    26782 
    26783 180 atoms, 150 bonds, 30 residues, 3 models selected 
    26784 
    26785 > select #20/A,L-T #18/A,L-T #22/A,L-T
    26786 
    26787 5580 atoms, 5640 bonds, 720 residues, 3 models selected 
    26788 9 [ID: 9] region 30 chains [1-24] RMSD: 107.276 
    26789  
    26790 
    26791 > select add #18
    26792 
    26793 13570 atoms, 13710 bonds, 1700 residues, 3 models selected 
    26794 
    26795 > select add #20
    26796 
    26797 21560 atoms, 21780 bonds, 2680 residues, 3 models selected 
    26798 
    26799 > select add #22
    26800 
    26801 29550 atoms, 29850 bonds, 3660 residues, 3 models selected 
    26802 
    26803 > hide sel cartoons
    26804 
    26805 > show sel surfaces
    26806 
    26807 > select #20/A,L-T:52 #18/A,L-T:52 #22/A,L-T:52
    26808 
    26809 180 atoms, 150 bonds, 30 residues, 3 models selected 
    26810 
    26811 > select #20/A,L-T #18/A,L-T #22/A,L-T
    26812 
    26813 5580 atoms, 5640 bonds, 720 residues, 3 models selected 
    26814 9 [ID: 9] region 30 chains [1-24] RMSD: 107.276 
    26815  
    26816 
    26817 > hide sel surfaces
    26818 
    26819 > color #18 #b7a359ff models
    26820 
    26821 > color #20 #b7a359ff models
    26822 
    26823 > color #22 #b7a359ff models
    26824 
    26825 > select clear
    26826 
    26827 > show #!14 models
    26828 
    26829 > hide #!14 models
    26830 
    26831 > show #!16 models
    26832 
    26833 > hide #!16 models
    26834 
    26835 > show #!16 models
    26836 
    26837 > select add #16.1
    26838 
    26839 5455 atoms, 5553 bonds, 678 residues, 1 model selected 
    26840 
    26841 > select add #16.3
    26842 
    26843 6334 atoms, 6447 bonds, 787 residues, 2 models selected 
    26844 
    26845 > select add #16.7
    26846 
    26847 11789 atoms, 12000 bonds, 1465 residues, 3 models selected 
    26848 
    26849 > select add #16.9
    26850 
    26851 17244 atoms, 17553 bonds, 2143 residues, 4 models selected 
    26852 
    26853 > select add #16.10
    26854 
    26855 18123 atoms, 18447 bonds, 2252 residues, 5 models selected 
    26856 
    26857 > select add #16.11
    26858 
    26859 23578 atoms, 24000 bonds, 2930 residues, 6 models selected 
    26860 
    26861 > select add #16.12
    26862 
    26863 24457 atoms, 24894 bonds, 3039 residues, 7 models selected 
    26864 
    26865 > select add #16.13
    26866 
    26867 29912 atoms, 30447 bonds, 3717 residues, 8 models selected 
    26868 
    26869 > select add #16.14
    26870 
    26871 30791 atoms, 31341 bonds, 3826 residues, 9 models selected 
    26872 
    26873 > select add #16.15
    26874 
    26875 35862 atoms, 36497 bonds, 4447 residues, 10 models selected 
    26876 
    26877 > select add #16.18
    26878 
    26879 40933 atoms, 41653 bonds, 5068 residues, 11 models selected 
    26880 
    26881 > select subtract #16.18
    26882 
    26883 35862 atoms, 36497 bonds, 4447 residues, 10 models selected 
    26884 
    26885 > select add #16.19
    26886 
    26887 40933 atoms, 41653 bonds, 5068 residues, 11 models selected 
    26888 
    26889 > select add #16.20
    26890 
    26891 46004 atoms, 46809 bonds, 5689 residues, 12 models selected 
    26892 
    26893 > select add #16.21
    26894 
    26895 51075 atoms, 51965 bonds, 6310 residues, 13 models selected 
    26896 
    26897 > select add #16.22
    26898 
    26899 52310 atoms, 53206 bonds, 6465 residues, 14 models selected 
    26900 
    26901 > select add #16.23
    26902 
    26903 53545 atoms, 54447 bonds, 6620 residues, 15 models selected 
    26904 
    26905 > select add #16.30
    26906 
    26907 54780 atoms, 55688 bonds, 6775 residues, 16 models selected 
    26908 
    26909 > select add #16.31
    26910 
    26911 56015 atoms, 56929 bonds, 6930 residues, 17 models selected 
    26912 
    26913 > select add #16.32
    26914 
    26915 57250 atoms, 58170 bonds, 7085 residues, 18 models selected 
    26916 
    26917 > select add #16.33
    26918 
    26919 58485 atoms, 59411 bonds, 7240 residues, 19 models selected 
    26920 
    26921 > select add #16.34
    26922 
    26923 59720 atoms, 60652 bonds, 7395 residues, 20 models selected 
    26924 
    26925 > select add #16.35
    26926 
    26927 60955 atoms, 61893 bonds, 7550 residues, 21 models selected 
    26928 
    26929 > hide sel cartoons
    26930 
    26931 > show sel surfaces
    26932 
    26933 > select clear
    26934 
    26935 Cell requested for row 20 is out of bounds for table with 83 rows! Resizing
    26936 table model. 
    26937 
    26938 > show #!10 models
    26939 
    26940 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    26941 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    26942 > files/BbMotB_dimer_extended.pdb
    26943 
    26944 Chain information for BbMotB_dimer_extended.pdb #33 
    26945 --- 
    26946 Chain | Description 
    26947 K | No description available 
    26948 L | No description available 
    26949  
    26950 
    26951 > select add #33
    26952 
    26953 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    26954 
    26955 > ui mousemode right "translate selected models"
    26956 
    26957 > view matrix models #33,1,0,0,21.679,0,1,0,19.023,0,0,1,69.811
    26958 
    26959 > view matrix models #33,1,0,0,216.28,0,1,0,67.682,0,0,1,108.49
    26960 
    26961 > view matrix models #33,1,0,0,180.91,0,1,0,66.862,0,0,1,108.02
    26962 
    26963 > view matrix models #33,1,0,0,173.74,0,1,0,68.504,0,0,1,102.5
    26964 
    26965 > ui mousemode right "rotate selected models"
    26966 
    26967 > view matrix models
    26968 > #33,0.82212,0.19102,-0.53631,216.23,-0.030867,0.9556,0.29305,52.42,0.56847,-0.22437,0.79152,83.495
    26969 
    26970 > view matrix models
    26971 > #33,0.74317,0.51518,-0.42695,185.49,-0.30248,0.82785,0.47241,76.836,0.59682,-0.22194,0.77107,82.089
    26972 
    26973 > ui mousemode right "translate selected models"
    26974 
    26975 > view matrix models
    26976 > #33,0.74317,0.51518,-0.42695,222.76,-0.30248,0.82785,0.47241,52.168,0.59682,-0.22194,0.77107,83.322
    26977 
    26978 > ui mousemode right "rotate selected models"
    26979 
    26980 > view matrix models
    26981 > #33,0.82295,0.51043,-0.24942,201.24,-0.34242,0.79599,0.49915,56.935,0.45332,-0.32537,0.82984,102.39
    26982 
    26983 > ui mousemode right "translate selected models"
    26984 
    26985 > view matrix models
    26986 > #33,0.82295,0.51043,-0.24942,188.94,-0.34242,0.79599,0.49915,52.835,0.45332,-0.32537,0.82984,98.389
    26987 
    26988 > ui mousemode right "rotate selected models"
    26989 
    26990 > view matrix models
    26991 > #33,0.79756,0.50803,-0.32527,197.69,-0.31282,0.80936,0.49707,48.84,0.51579,-0.29469,0.80444,91.397
    26992 
    26993 > ui mousemode right "translate selected models"
    26994 
    26995 > view matrix models
    26996 > #33,0.79756,0.50803,-0.32527,201.01,-0.31282,0.80936,0.49707,50.28,0.51579,-0.29469,0.80444,92.963
    26997 
    26998 > view matrix models
    26999 > #33,0.79756,0.50803,-0.32527,203.08,-0.31282,0.80936,0.49707,52.155,0.51579,-0.29469,0.80444,89.909
    27000 
    27001 > ui mousemode right "rotate selected models"
    27002 
    27003 > view matrix models
    27004 > #33,0.74765,0.61942,-0.23944,190.95,-0.41678,0.71836,0.557,66.071,0.51703,-0.31665,0.79525,92.539
    27005 
    27006 > ui mousemode right "translate selected models"
    27007 
    27008 > view matrix models
    27009 > #33,0.74765,0.61942,-0.23944,194.55,-0.41678,0.71836,0.557,61.303,0.51703,-0.31665,0.79525,91.721
    27010 
    27011 > select clear
    27012 
    27013 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    27014 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-
    27015 > files/BbMotB_dimer_extended.pdb
    27016 
    27017 Chain information for BbMotB_dimer_extended.pdb #34 
    27018 --- 
    27019 Chain | Description 
    27020 K | No description available 
    27021 L | No description available 
    27022  
    27023 
    27024 > select add #34
    27025 
    27026 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    27027 
    27028 > view matrix models #34,1,0,0,161.65,0,1,0,136.58,0,0,1,-67.038
    27029 
    27030 > view matrix models #34,1,0,0,237.53,0,1,0,161.8,0,0,1,76.649
    27031 
    27032 > view matrix models #34,1,0,0,199.38,0,1,0,175.58,0,0,1,82.821
    27033 
    27034 > close #34
    27035 
    27036 > combine #33 modelId #34 name BbMotB_dimer_extended.pdb
    27037 
    27038 > select add #34
    27039 
    27040 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    27041 
    27042 > view matrix models
    27043 > #34,0.74765,0.61942,-0.23944,215.85,-0.41678,0.71836,0.557,171.61,0.51703,-0.31665,0.79525,89.654
    27044 
    27045 > view matrix models
    27046 > #34,0.74765,0.61942,-0.23944,215.72,-0.41678,0.71836,0.557,169.76,0.51703,-0.31665,0.79525,89.668
    27047 
    27048 > combine #34 modelId #35 name BbMotB_dimer_extended.pdb
    27049 
    27050 > select subtract #34
    27051 
    27052 Nothing selected 
    27053 
    27054 > select add #35
    27055 
    27056 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    27057 
    27058 > view matrix models
    27059 > #35,0.74765,0.61942,-0.23944,198.58,-0.41678,0.71836,0.557,281.85,0.51703,-0.31665,0.79525,88.152
    27060 
    27061 > ui mousemode right "rotate selected models"
    27062 
    27063 > view matrix models
    27064 > #35,0.8127,0.47483,-0.33771,213.27,-0.26798,0.81924,0.50698,261.8,0.5174,-0.32152,0.79305,88.739
    27065 
    27066 > ui mousemode right "translate selected models"
    27067 
    27068 > view matrix models
    27069 > #35,0.8127,0.47483,-0.33771,215.47,-0.26798,0.81924,0.50698,267.82,0.5174,-0.32152,0.79305,88.742
    27070 
    27071 > select clear
    27072 
    27073 > select add #33
    27074 
    27075 4099 atoms, 4171 bonds, 2 pseudobonds, 518 residues, 2 models selected 
    27076 
    27077 > select add #34
    27078 
    27079 8198 atoms, 8342 bonds, 4 pseudobonds, 1036 residues, 4 models selected 
    27080 
    27081 > select add #35
    27082 
    27083 12297 atoms, 12513 bonds, 6 pseudobonds, 1554 residues, 6 models selected 
    27084 
    27085 > color #33-35 #905d12ff models
    27086 
    27087 The cached device pixel ratio value was stale on window expose. Please file a
    27088 QTBUG which explains how to reproduce. 
    27089 
    27090 Alignment identifier is 1 
    27091 Alignment identifier is 2 
    27092 
    27093 > select #33/K:260 #34/K:260 #35/K:260
    27094 
    27095 27 atoms, 24 bonds, 3 residues, 3 models selected 
    27096 
    27097 > select #33/K:159-260 #34/K:159-260 #35/K:159-260
    27098 
    27099 2433 atoms, 2481 bonds, 3 pseudobonds, 303 residues, 6 models selected 
    27100 1 [ID: 1] region 3 chains [158-258] RMSD: 158.691 
    27101  
    27102 
    27103 > select #33/K:1 #34/K:1 #35/K:1
    27104 
    27105 24 atoms, 21 bonds, 3 residues, 3 models selected 
    27106 
    27107 > select #33/K:1-84 #34/K:1-84 #35/K:1-84
    27108 
    27109 1977 atoms, 2019 bonds, 252 residues, 3 models selected 
    27110 1 [ID: 1] region 3 chains [1-84] RMSD: 159.798 
    27111  
    27112 
    27113 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    27114 
    27115 39 atoms, 36 bonds, 6 residues, 3 models selected 
    27116 
    27117 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    27118 
    27119 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    27120 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    27121  
    27122 
    27123 > select #33/L:1-2 #34/L:1-2 #35/L:1-2
    27124 
    27125 39 atoms, 36 bonds, 6 residues, 3 models selected 
    27126 
    27127 > select #33/L:1-6 #34/L:1-6 #35/L:1-6
    27128 
    27129 147 atoms, 144 bonds, 18 residues, 3 models selected 
    27130 2 [ID: 2] region 3 chains [1-6] RMSD: 162.586 
    27131  
    27132 
    27133 > select #33/K:1 #34/K:1 #35/K:1
    27134 
    27135 24 atoms, 21 bonds, 3 residues, 3 models selected 
    27136 
    27137 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    27138 
    27139 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    27140 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    27141  
    27142 
    27143 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    27144 
    27145 39 atoms, 36 bonds, 6 residues, 3 models selected 
    27146 
    27147 > select #33/K:1-16 #34/K:1-16 #35/K:1-16
    27148 
    27149 360 atoms, 363 bonds, 48 residues, 3 models selected 
    27150 1 [ID: 1] region 3 chains [1-16] RMSD: 161.945 
    27151  
    27152 
    27153 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    27154 
    27155 39 atoms, 36 bonds, 6 residues, 3 models selected 
    27156 
    27157 > select #33/K:1-36 #34/K:1-36 #35/K:1-36
    27158 
    27159 852 atoms, 867 bonds, 108 residues, 3 models selected 
    27160 1 [ID: 1] region 3 chains [1-36] RMSD: 161.445 
    27161  
    27162 
    27163 > select #33/K:42 #34/K:42 #35/K:42
    27164 
    27165 24 atoms, 21 bonds, 3 residues, 3 models selected 
    27166 
    27167 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    27168 
    27169 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    27170 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    27171  
    27172 
    27173 > select add #33
    27174 
    27175 4765 atoms, 4849 bonds, 2 pseudobonds, 602 residues, 4 models selected 
    27176 
    27177 > select add #34
    27178 
    27179 8531 atoms, 8681 bonds, 4 pseudobonds, 1078 residues, 5 models selected 
    27180 
    27181 > select add #35
    27182 
    27183 12297 atoms, 12513 bonds, 6 pseudobonds, 1554 residues, 6 models selected 
    27184 
    27185 > hide sel cartoons
    27186 
    27187 > show sel surfaces
    27188 
    27189 > select #33/K:1-2 #34/K:1-2 #35/K:1-2
    27190 
    27191 39 atoms, 36 bonds, 6 residues, 3 models selected 
    27192 
    27193 > select #33/K:1-42 #34/K:1-42 #35/K:1-42
    27194 
    27195 999 atoms, 1017 bonds, 126 residues, 3 models selected 
    27196 1 [ID: 1] region 3 chains [1-42] RMSD: 161.188 
    27197  
    27198 
    27199 > hide sel surfaces
    27200 
    27201 > select #33/L:1-2 #34/L:1-2 #35/L:1-2
    27202 
    27203 39 atoms, 36 bonds, 6 residues, 3 models selected 
    27204 
    27205 > select #33/L:1-40 #34/L:1-40 #35/L:1-40
    27206 
    27207 951 atoms, 969 bonds, 120 residues, 3 models selected 
    27208 2 [ID: 2] region 3 chains [1-40] RMSD: 161.008 
    27209  
    27210 
    27211 > hide sel surfaces
    27212 
    27213 > select clear
    27214 
    27215 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    27216 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    27217 > includeMaps true
    27218 
    27219 > select add #10
    27220 
    27221 2 models selected 
    27222 
    27223 > ui tool show "Segment Map"
    27224 
    27225 Segmenting MotBpg.mrc, density threshold 0.002900 
    27226 Only showing 60 of 1058 regions. 
    27227 Showing 60 of 1058 region surfaces 
    27228 46770 watershed regions, grouped to 1058 regions 
    27229 Showing MotBpg.seg - 1058 regions, 60 surfaces 
    27230 
    27231 > select subtract #10
    27232 
    27233 Nothing selected 
    27234 
    27235 > hide #!10 models
    27236 
    27237 > hide #!8 models
    27238 
    27239 > hide #!16 models
    27240 
    27241 > show #!17 models
    27242 
    27243 > hide #!17 models
    27244 
    27245 > hide #!18 models
    27246 
    27247 > hide #!19 models
    27248 
    27249 > hide #!20 models
    27250 
    27251 > hide #!21 models
    27252 
    27253 > show #!21 models
    27254 
    27255 > hide #!22 models
    27256 
    27257 > hide #!25 models
    27258 
    27259 > hide #!26 models
    27260 
    27261 > hide #!27 models
    27262 
    27263 > hide #!28 models
    27264 
    27265 > hide #!29 models
    27266 
    27267 > hide #!30 models
    27268 
    27269 > hide #!31 models
    27270 
    27271 > hide #!33 models
    27272 
    27273 > hide #!34 models
    27274 
    27275 > hide #!35 models
    27276 
    27277 > select #21.1
    27278 
    27279 1 model selected 
    27280 
    27281 > select add #21.4
    27282 
    27283 2 models selected 
    27284 Opened MotBpg_imasked as #36, grid size 220,250,200, pixel 2.15,2.15,2.15,
    27285 shown at step 1, values float32 
    27286 
    27287 The cached device pixel ratio value was stale on window expose. Please file a
    27288 QTBUG which explains how to reproduce. 
    27289 
    27290 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    27291 > manuscript/Start_Aug_2024/Local-ref-PflAB/For-chimera/cyc3/Re-
    27292 > segment_Aug2420204/3xMotBpg.mrc models #36
    27293 
    27294 > close #21
    27295 
    27296 > volume gaussian #36 sDev 3
    27297 
    27298 Opened 3xMotBpg.mrc gaussian as #21, grid size 220,250,200, pixel
    27299 2.15,2.15,2.15, shown at step 1, values float32 
    27300 
    27301 > close #21
    27302 
    27303 > volume gaussian #36 sDev 2
    27304 
    27305 Opened 3xMotBpg.mrc gaussian as #21, grid size 220,250,200, pixel
    27306 2.15,2.15,2.15, shown at step 1, values float32 
    27307 
    27308 > surface dust #21 size 12.6
    27309 
    27310 > surface dust #21 size 50
    27311 
    27312 > surface dust #21 size 60
    27313 
    27314 > ui tool show "Map Eraser"
    27315 
    27316 > volume erase #21 center 309.37,266.92,146.96 radius 190.15 outside true
    27317 
    27318 > color #21 #72727259 models
    27319 
    27320 > close #36
    27321 
    27322 > show #!33 models
    27323 
    27324 > show #!34 models
    27325 
    27326 > show #!35 models
    27327 
    27328 > 30\. combine #33-35 modelId #36 name 3x-BbMotB_dimer_extended.pdb
    27329 
    27330 Unknown command: 30. combine #33-35 modelId #36 name
    27331 3x-BbMotB_dimer_extended.pdb 
    27332 
    27333 > combine #33-35 modelId #36 name 3x-BbMotB_dimer_extended.pdb
    27334 
    27335 Remapping chain ID 'K' in BbMotB_dimer_extended.pdb #34 to 'M' 
    27336 Remapping chain ID 'L' in BbMotB_dimer_extended.pdb #34 to 'N' 
    27337 Remapping chain ID 'K' in BbMotB_dimer_extended.pdb #35 to 'O' 
    27338 Remapping chain ID 'L' in BbMotB_dimer_extended.pdb #35 to 'P' 
    27339 
    27340 > hide #!33 models
    27341 
    27342 > hide #!34 models
    27343 
    27344 > hide #!35 models
    27345 
    27346 > select add #36.1
    27347 
    27348 6 pseudobonds, 1 model selected 
    27349 
    27350 > select subtract #36.1
    27351 
    27352 Nothing selected 
    27353 
    27354 > close #36
    27355 
    27356 > show #!33 models
    27357 
    27358 > show #!34 models
    27359 
    27360 > show #!35 models
    27361 
    27362 > show #!25 models
    27363 
    27364 > show #!26 models
    27365 
    27366 > show #!27 models
    27367 
    27368 > show #!28 models
    27369 
    27370 > show #!29 models
    27371 
    27372 > show #!31 models
    27373 
    27374 > show #!30 models
    27375 
    27376 > show #!32 models
    27377 
    27378 > show #!24 models
    27379 
    27380 > show #!23 models
    27381 
    27382 > hide #!23 models
    27383 
    27384 > show #!23 models
    27385 
    27386 > hide #!23 models
    27387 
    27388 > show #!22 models
    27389 
    27390 > hide #!22 models
    27391 
    27392 > show #!22 models
    27393 
    27394 > show #!20 models
    27395 
    27396 > show #!18 models
    27397 
    27398 > show #!19 models
    27399 
    27400 > show #!17 models
    27401 
    27402 > show #!15 models
    27403 
    27404 > hide #!15 models
    27405 
    27406 > show #!16 models
    27407 
    27408 > show #!15 models
    27409 
    27410 > open /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    27411 > manuscript/Start_Aug_2024/Local-ref-PflAB/PDB-files/7cbl.pdb
    27412 
    27413 7cbl.pdb title: 
    27414 Cryo-em structure of the flagellar LP ring from salmonella [more info...] 
    27415  
    27416 Chain information for 7cbl.pdb #36 
    27417 --- 
    27418 Chain | Description | UniProt 
    27419 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | basal BODY L-RING protein | FLGH_SALTY 1-232 
    27420 a b c d e f g h i j k l m n o p q r s t u v w x y z | basal BODY P-RING protein | FLGI_SALTY 1-365 
    27421  
    27422 Non-standard residues in 7cbl.pdb #36 
    27423 --- 
    27424 OCA — octanoic acid (caprylic acid) 
    27425  
    27426 
    27427 > select add #36
    27428 
    27429 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected 
    27430 
    27431 > ui mousemode right "rotate selected models"
    27432 
    27433 > view matrix models
    27434 > #36,0.99952,-0.023444,-0.020012,14.476,0.023458,0.99972,0.00046154,-7.9312,0.019995,-0.00093074,0.9998,-6.3355
    27435 
    27436 > view matrix models
    27437 > #36,0.99016,0.091812,0.10556,-61.574,0.12368,-0.92715,-0.35369,717.2,0.065401,0.36327,-0.92939,481.42
    27438 
    27439 > view matrix models
    27440 > #36,0.95439,0.16729,0.24728,-120.69,0.24621,-0.90949,-0.33497,664.1,0.16886,0.38057,-0.9092,434.38
    27441 
    27442 > ui mousemode right "translate selected models"
    27443 
    27444 > view matrix models
    27445 > #36,0.95439,0.16729,0.24728,-411.87,0.24621,-0.90949,-0.33497,634.98,0.16886,0.38057,-0.9092,400.89
    27446 
    27447 > view matrix models
    27448 > #36,0.95439,0.16729,0.24728,-430.05,0.24621,-0.90949,-0.33497,585.73,0.16886,0.38057,-0.9092,470.59
    27449 
    27450 The cached device pixel ratio value was stale on window expose. Please file a
    27451 QTBUG which explains how to reproduce. 
    27452 
    27453 > view matrix models
    27454 > #36,0.95439,0.16729,0.24728,-430.2,0.24621,-0.90949,-0.33497,584.34,0.16886,0.38057,-0.9092,468.67
    27455 
    27456 > ui mousemode right "rotate selected models"
    27457 
    27458 > view matrix models
    27459 > #36,0.94876,0.1594,0.27286,-433.95,0.18496,-0.98021,-0.070503,542.9,0.25622,0.11736,-0.95947,543.61
    27460 
    27461 > ui mousemode right "translate selected models"
    27462 
    27463 > view matrix models
    27464 > #36,0.94876,0.1594,0.27286,-432.12,0.18496,-0.98021,-0.070503,562.18,0.25622,0.11736,-0.95947,530
    27465 
    27466 > view matrix models
    27467 > #36,0.94876,0.1594,0.27286,-426.95,0.18496,-0.98021,-0.070503,549.55,0.25622,0.11736,-0.95947,532.65
    27468 
    27469 > ui tool show "Fit in Map"
    27470 
    27471 The cached device pixel ratio value was stale on window expose. Please file a
    27472 QTBUG which explains how to reproduce. 
    27473 
    27474 [Repeated 1 time(s)]
    27475 
    27476 > fitmap #36 inMap #15
    27477 
    27478 Fit molecule 7cbl.pdb (#36) to map LP-ring.mrc gaussian (#15) using 99242
    27479 atoms 
    27480 average map value = 0.01848, steps = 192 
    27481 shifted from previous position = 26.5 
    27482 rotated from previous position = 19.1 degrees 
    27483 atoms outside contour = 51926, contour level = 0.0029 
    27484  
    27485 Position of 7cbl.pdb (#36) relative to LP-ring.mrc gaussian (#15) coordinates: 
    27486 Matrix rotation and translation 
    27487 0.98109265 0.18738329 -0.04842298 -364.80581143 
    27488 0.18778874 -0.98220164 0.00392332 530.82087661 
    27489 -0.04682597 -0.01294243 -0.99881924 690.06118649 
    27490 Axis -0.99526186 -0.09424097 0.02392613 
    27491 Axis point 0.00000000 284.13402910 339.44972981 
    27492 Rotation angle (degrees) 179.51452584 
    27493 Shift along axis 329.56273090 
    27494  
    27495 
    27496 > fitmap #36 inMap #15
    27497 
    27498 Fit molecule 7cbl.pdb (#36) to map LP-ring.mrc gaussian (#15) using 99242
    27499 atoms 
    27500 average map value = 0.01848, steps = 76 
    27501 shifted from previous position = 0.0186 
    27502 rotated from previous position = 0.0136 degrees 
    27503 atoms outside contour = 51931, contour level = 0.0029 
    27504  
    27505 Position of 7cbl.pdb (#36) relative to LP-ring.mrc gaussian (#15) coordinates: 
    27506 Matrix rotation and translation 
    27507 0.98107948 0.18742063 -0.04854515 -364.76747896 
    27508 0.18781829 -0.98219677 0.00372290 530.87666956 
    27509 -0.04698315 -0.01277014 -0.99881408 690.07249131 
    27510 Axis -0.99525856 -0.09425801 0.02399637 
    27511 Axis point 0.00000000 284.13118826 339.46925121 
    27512 Rotation angle (degrees) 179.52525271 
    27513 Shift along axis 329.55781165 
    27514  
    27515 
    27516 > ui mousemode right "rotate selected models"
    27517 
    27518 > view matrix models
    27519 > #36,0.97923,0.19635,0.050588,-399.23,0.19648,-0.9805,0.0024405,527.82,0.050081,0.0075498,-0.99872,650.67
    27520 
    27521 > view orient
    27522 
    27523 [Repeated 1 time(s)]
    27524 
    27525 > turn x 90
    27526 
    27527 [Repeated 2 time(s)]
    27528 
    27529 > turn y 90
    27530 
    27531 [Repeated 1 time(s)]
    27532 
    27533 > view matrix models
    27534 > #36,0.98047,0.1965,0.0085164,-386.07,0.19648,-0.9805,0.0024405,527.82,0.0088299,-0.0007195,-0.99996,667.68
    27535 
    27536 > turn y 90
    27537 
    27538 [Repeated 1 time(s)]
    27539 
    27540 > select clear
    27541 
    27542 > select add #36
    27543 
    27544 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected 
    27545 
    27546 > hide sel atoms
    27547 
    27548 > show sel cartoons
    27549 
    27550 > select clear
    27551 
    27552 [Repeated 1 time(s)]
    27553 
    27554 > view orient
    27555 
    27556 Drag select of Hp-FliF-comp_0 SES surface, 6028 of 308174 triangles, Hp-FliF-
    27557 comp_8 SES surface, 257 of 307462 triangles, Hp-FliF-comp_9 SES surface, 1366
    27558 of 307956 triangles, Hp-FliF-comp_AA SES surface, 519 of 307878 triangles, Hp-
    27559 FliF-comp_B SES surface, 2758 of 102586 triangles, Hp-FliF-comp_K SES surface,
    27560 4194 of 102380 triangles, Hp-FliF-comp_V SES surface, 2762 of 126200
    27561 triangles, Hp-FliF-comp_d SES surface, 80 of 126402 triangles, Hp-FliF-comp_e
    27562 SES surface, 1736 of 126996 triangles, Hp-FliF-comp_f SES surface, 2142 of
    27563 126310 triangles, Hp-FliF-comp_q SES surface, 84 of 307794 triangles, Hp-FliF-
    27564 comp_r SES surface, 2877 of 308144 triangles, Hp-FliF-comp_s SES surface, 8253
    27565 of 307492 triangles, 6021 residues, 22 pseudobonds 
    27566 
    27567 > select add #36
    27568 
    27569 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 15 models selected 
    27570 
    27571 > hide sel cartoons
    27572 
    27573 > show sel surfaces
    27574 
    27575 > select clear
    27576 
    27577 Drag select of Hp-FliF-comp_0 SES surface, 8612 of 308174 triangles, Hp-FliF-
    27578 comp_7 SES surface, 45 of 307576 triangles, Hp-FliF-comp_8 SES surface, 458 of
    27579 307462 triangles, Hp-FliF-comp_9 SES surface, 1993 of 307956 triangles, Hp-
    27580 FliF-comp_AA SES surface, 1094 of 307878 triangles, Hp-FliF-comp_AR SES
    27581 surface, 87 of 308154 triangles, Hp-FliF-comp_AS SES surface, 41 of 307454
    27582 triangles, Hp-FliF-comp_B SES surface, 4026 of 102586 triangles, Hp-FliF-
    27583 comp_K SES surface, 5110 of 102380 triangles, Hp-FliF-comp_V SES surface, 3952
    27584 of 126200 triangles, Hp-FliF-comp_d SES surface, 251 of 126402 triangles, Hp-
    27585 FliF-comp_e SES surface, 2486 of 126996 triangles, Hp-FliF-comp_f SES surface,
    27586 2965 of 126310 triangles, Hp-FliF-comp_q SES surface, 442 of 307794 triangles,
    27587 Hp-FliF-comp_r SES surface, 4432 of 308144 triangles, Hp-FliF-comp_s SES
    27588 surface, 11349 of 307492 triangles, 7cbl.pdb_A SES surface, 196414 of 260654
    27589 triangles, 7cbl.pdb_B SES surface, 148709 of 260418 triangles, 7cbl.pdb_C SES
    27590 surface, 62358 of 261904 triangles, 7cbl.pdb_D SES surface, 209 of 260742
    27591 triangles, 7cbl.pdb_L SES surface, 1561 of 260934 triangles, 7cbl.pdb_M SES
    27592 surface, 23481 of 260974 triangles, 7cbl.pdb_N SES surface, 39311 of 261482
    27593 triangles, 7cbl.pdb_O SES surface, 54398 of 261300 triangles, 7cbl.pdb_P SES
    27594 surface, 75031 of 260648 triangles, 7cbl.pdb_Q SES surface, 166049 of 261816
    27595 triangles, 7cbl.pdb_R SES surface, 248845 of 261108 triangles, 7cbl.pdb_S SES
    27596 surface, 7cbl.pdb_T SES surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES
    27597 surface, 7cbl.pdb_W SES surface, 7cbl.pdb_X SES surface, 248707 of 260098
    27598 triangles, 7cbl.pdb_Y SES surface, 226883 of 260558 triangles, 7cbl.pdb_Z SES
    27599 surface, 211544 of 261230 triangles, 7cbl.pdb_a SES surface, 275677 of 294626
    27600 triangles, 7cbl.pdb_b SES surface, 209108 of 294054 triangles, 7cbl.pdb_c SES
    27601 surface, 103190 of 294726 triangles, 7cbl.pdb_d SES surface, 5641 of 293734
    27602 triangles, 7cbl.pdb_o SES surface, 1360 of 294010 triangles, 7cbl.pdb_p SES
    27603 surface, 59071 of 294246 triangles, 7cbl.pdb_q SES surface, 157050 of 294206
    27604 triangles, 7cbl.pdb_r SES surface, 249024 of 294146 triangles, 7cbl.pdb_s SES
    27605 surface, 7cbl.pdb_t SES surface, 7cbl.pdb_u SES surface, 7cbl.pdb_v SES
    27606 surface, 7cbl.pdb_w SES surface, 7cbl.pdb_x SES surface, 7cbl.pdb_y SES
    27607 surface, 7cbl.pdb_z SES surface 
    27608 
    27609 > select clear
    27610 
    27611 > view orient
    27612 
    27613 > hide #!15 models
    27614 
    27615 > hide #!16 models
    27616 
    27617 > hide #!17 models
    27618 
    27619 > hide #!18 models
    27620 
    27621 > hide #!19 models
    27622 
    27623 > show #!15 models
    27624 
    27625 > hide #!20 models
    27626 
    27627 > hide #!21 models
    27628 
    27629 > hide #!22 models
    27630 
    27631 > hide #!24 models
    27632 
    27633 > hide #!25 models
    27634 
    27635 > hide #!26 models
    27636 
    27637 > hide #!27 models
    27638 
    27639 > show #!27 models
    27640 
    27641 > hide #!28 models
    27642 
    27643 > hide #!27 models
    27644 
    27645 > hide #!29 models
    27646 
    27647 > hide #!30 models
    27648 
    27649 > hide #!31 models
    27650 
    27651 > hide #!32 models
    27652 
    27653 > hide #!33 models
    27654 
    27655 > hide #!34 models
    27656 
    27657 > hide #!35 models
    27658 
    27659 > hide #!36 models
    27660 
    27661 > show #!36 models
    27662 
    27663 Drag select of 7cbl.pdb_A SES surface, 61024 of 260654 triangles, 7cbl.pdb_B
    27664 SES surface, 102410 of 260418 triangles, 7cbl.pdb_C SES surface, 193053 of
    27665 261904 triangles, 7cbl.pdb_D SES surface, 259705 of 260742 triangles,
    27666 7cbl.pdb_E SES surface, 7cbl.pdb_F SES surface, 7cbl.pdb_G SES surface,
    27667 7cbl.pdb_H SES surface, 7cbl.pdb_I SES surface, 7cbl.pdb_J SES surface,
    27668 7cbl.pdb_K SES surface, 7cbl.pdb_L SES surface, 253330 of 260934 triangles,
    27669 7cbl.pdb_M SES surface, 232905 of 260974 triangles, 7cbl.pdb_N SES surface,
    27670 217973 of 261482 triangles, 7cbl.pdb_O SES surface, 203923 of 261300
    27671 triangles, 7cbl.pdb_P SES surface, 177720 of 260648 triangles, 7cbl.pdb_Q SES
    27672 surface, 86697 of 261816 triangles, 7cbl.pdb_R SES surface, 9907 of 261108
    27673 triangles, 7cbl.pdb_X SES surface, 4385 of 260098 triangles, 7cbl.pdb_Y SES
    27674 surface, 28510 of 260558 triangles, 7cbl.pdb_Z SES surface, 45909 of 261230
    27675 triangles, 7cbl.pdb_a SES surface, 30285 of 294626 triangles, 7cbl.pdb_b SES
    27676 surface, 92255 of 294054 triangles, 7cbl.pdb_c SES surface, 203860 of 294726
    27677 triangles, 7cbl.pdb_d SES surface, 288442 of 293734 triangles, 7cbl.pdb_e SES
    27678 surface, 7cbl.pdb_f SES surface, 7cbl.pdb_g SES surface, 7cbl.pdb_h SES
    27679 surface, 7cbl.pdb_i SES surface, 7cbl.pdb_j SES surface, 7cbl.pdb_k SES
    27680 surface, 7cbl.pdb_l SES surface, 7cbl.pdb_m SES surface, 7cbl.pdb_n SES
    27681 surface, 7cbl.pdb_o SES surface, 7cbl.pdb_p SES surface, 248362 of 294246
    27682 triangles, 7cbl.pdb_q SES surface, 146650 of 294206 triangles, 7cbl.pdb_r SES
    27683 surface, 51098 of 294146 triangles, 15 LP-ring.mrc gaussian 
    27684 
    27685 > hide #!36 cartoons
    27686 
    27687 > hide #!36 surfaces
    27688 
    27689 > show #!36 surfaces
    27690 
    27691 The cached device pixel ratio value was stale on window expose. Please file a
    27692 QTBUG which explains how to reproduce. 
    27693 
    27694 > select clear
    27695 
    27696 [Repeated 1 time(s)]Drag select of 7cbl.pdb_A SES surface, 197163 of 260654
    27697 triangles, 7cbl.pdb_B SES surface, 151113 of 260418 triangles, 7cbl.pdb_C SES
    27698 surface, 63838 of 261904 triangles, 7cbl.pdb_D SES surface, 373 of 260742
    27699 triangles, 7cbl.pdb_L SES surface, 2822 of 260934 triangles, 7cbl.pdb_M SES
    27700 surface, 24778 of 260974 triangles, 7cbl.pdb_N SES surface, 40288 of 261482
    27701 triangles, 7cbl.pdb_O SES surface, 55033 of 261300 triangles, 7cbl.pdb_P SES
    27702 surface, 76588 of 260648 triangles, 7cbl.pdb_Q SES surface, 169195 of 261816
    27703 triangles, 7cbl.pdb_R SES surface, 250270 of 261108 triangles, 7cbl.pdb_S SES
    27704 surface, 7cbl.pdb_T SES surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES
    27705 surface, 7cbl.pdb_W SES surface, 7cbl.pdb_X SES surface, 249974 of 260098
    27706 triangles, 7cbl.pdb_Y SES surface, 227596 of 260558 triangles, 7cbl.pdb_Z SES
    27707 surface, 212233 of 261230 triangles, 7cbl.pdb_a SES surface, 274902 of 294626
    27708 triangles, 7cbl.pdb_b SES surface, 208716 of 294054 triangles, 7cbl.pdb_c SES
    27709 surface, 103666 of 294726 triangles, 7cbl.pdb_d SES surface, 5923 of 293734
    27710 triangles, 7cbl.pdb_o SES surface, 974 of 294010 triangles, 7cbl.pdb_p SES
    27711 surface, 58312 of 294246 triangles, 7cbl.pdb_q SES surface, 156995 of 294206
    27712 triangles, 7cbl.pdb_r SES surface, 249259 of 294146 triangles, 7cbl.pdb_s SES
    27713 surface, 7cbl.pdb_t SES surface, 7cbl.pdb_u SES surface, 7cbl.pdb_v SES
    27714 surface, 7cbl.pdb_w SES surface, 7cbl.pdb_x SES surface, 7cbl.pdb_y SES
    27715 surface, 7cbl.pdb_z SES surface 
    27716 
    27717 > hide #!36 cartoons
    27718 
    27719 [Repeated 1 time(s)]
    27720 
    27721 > hide #!36 surfaces
    27722 
    27723 > show #!36 surfaces
    27724 
    27725 > hide #!15 models
    27726 
    27727 Drag select of 7cbl.pdb_A SES surface, 199076 of 260654 triangles, 7cbl.pdb_B
    27728 SES surface, 158273 of 260418 triangles, 7cbl.pdb_C SES surface, 68832 of
    27729 261904 triangles, 7cbl.pdb_D SES surface, 3423 of 260742 triangles, 7cbl.pdb_L
    27730 SES surface, 4187 of 260934 triangles, 7cbl.pdb_M SES surface, 25974 of 260974
    27731 triangles, 7cbl.pdb_N SES surface, 41975 of 261482 triangles, 7cbl.pdb_O SES
    27732 surface, 56368 of 261300 triangles, 7cbl.pdb_P SES surface, 81787 of 260648
    27733 triangles, 7cbl.pdb_Q SES surface, 179929 of 261816 triangles, 7cbl.pdb_R SES
    27734 surface, 256994 of 261108 triangles, 7cbl.pdb_S SES surface, 7cbl.pdb_T SES
    27735 surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES surface, 7cbl.pdb_W SES
    27736 surface, 7cbl.pdb_X SES surface, 251898 of 260098 triangles, 7cbl.pdb_Y SES
    27737 surface, 229243 of 260558 triangles, 7cbl.pdb_Z SES surface, 213592 of 261230
    27738 triangles, 7cbl.pdb_a SES surface, 280602 of 294626 triangles, 7cbl.pdb_b SES
    27739 surface, 217020 of 294054 triangles, 7cbl.pdb_c SES surface, 118932 of 294726
    27740 triangles, 7cbl.pdb_d SES surface, 9141 of 293734 triangles, 7cbl.pdb_o SES
    27741 surface, 3185 of 294010 triangles, 7cbl.pdb_p SES surface, 65819 of 294246
    27742 triangles, 7cbl.pdb_q SES surface, 165577 of 294206 triangles, 7cbl.pdb_r SES
    27743 surface, 254701 of 294146 triangles, 7cbl.pdb_s SES surface, 7cbl.pdb_t SES
    27744 surface, 7cbl.pdb_u SES surface, 7cbl.pdb_v SES surface, 7cbl.pdb_w SES
    27745 surface, 7cbl.pdb_x SES surface, 7cbl.pdb_y SES surface, 7cbl.pdb_z SES
    27746 surface 
    27747 
    27748 > select clear
    27749 
    27750 Drag select of 7cbl.pdb_A SES surface, 204662 of 260654 triangles, 7cbl.pdb_B
    27751 SES surface, 184165 of 260418 triangles, 7cbl.pdb_C SES surface, 98778 of
    27752 261904 triangles, 7cbl.pdb_D SES surface, 26869 of 260742 triangles,
    27753 7cbl.pdb_L SES surface, 11362 of 260934 triangles, 7cbl.pdb_M SES surface,
    27754 31859 of 260974 triangles, 7cbl.pdb_N SES surface, 47755 of 261482 triangles,
    27755 7cbl.pdb_O SES surface, 62792 of 261300 triangles, 7cbl.pdb_P SES surface,
    27756 113171 of 260648 triangles, 7cbl.pdb_Q SES surface, 202809 of 261816
    27757 triangles, 7cbl.pdb_R SES surface, 7cbl.pdb_S SES surface, 7cbl.pdb_T SES
    27758 surface, 7cbl.pdb_U SES surface, 7cbl.pdb_V SES surface, 7cbl.pdb_W SES
    27759 surface, 7cbl.pdb_X SES surface, 259223 of 260098 triangles, 7cbl.pdb_Y SES
    27760 surface, 236028 of 260558 triangles, 7cbl.pdb_Z SES surface, 219836 of 261230
    27761 triangles, 7cbl.pdb_a SES surface, 292754 of 294626 triangles, 7cbl.pdb_b SES
    27762 surface, 239690 of 294054 triangles, 7cbl.pdb_c SES surface, 164138 of 294726
    27763 triangles, 7cbl.pdb_d SES surface, 39856 of 293734 triangles, 7cbl.pdb_o SES
    27764 surface, 20901 of 294010 triangles, 7cbl.pdb_p SES surface, 99572 of 294246
    27765 triangles, 7cbl.pdb_q SES surface, 201882 of 294206 triangles, 7cbl.pdb_r SES
    27766 surface, 282357 of 294146 triangles, 7cbl.pdb_s SES surface, 7cbl.pdb_t SES
    27767 surface, 7cbl.pdb_u SES surface, 292711 of 293402 triangles, 7cbl.pdb_v SES
    27768 surface, 285896 of 295054 triangles, 7cbl.pdb_w SES surface, 279452 of 294020
    27769 triangles, 7cbl.pdb_x SES surface, 292892 of 293348 triangles, 7cbl.pdb_y SES
    27770 surface, 7cbl.pdb_z SES surface 
    27771 
    27772 > select clear
    27773 
    27774 > select add #36
    27775 
    27776 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 2 models selected 
    27777 
    27778 > hide sel surfaces
    27779 
    27780 [Repeated 1 time(s)]
    27781 
    27782 > show sel cartoons
    27783 
    27784 > select clear
    27785 
    27786 Drag select of 6265 residues, 23 pseudobonds 
    27787 
    27788 > select clear
    27789 
    27790 > show #!15 models
    27791 
    27792 Drag select of 15 LP-ring.mrc gaussian , 7309 residues, 29 pseudobonds 
    27793 
    27794 > show sel surfaces
    27795 
    27796 > select add #36
    27797 
    27798 99242 atoms, 100516 bonds, 52 pseudobonds, 13390 residues, 42 models selected 
    27799 
    27800 > hide sel cartoons
    27801 
    27802 > select clear
    27803 
    27804 > color #36 #92aa93ff models
    27805 
    27806 > hide #!15 models
    27807 
    27808 > show #!35 models
    27809 
    27810 The cached device pixel ratio value was stale on window expose. Please file a
    27811 QTBUG which explains how to reproduce. 
    27812 
    27813 > show #!18-35 models
    27814 
    27815 > hide #!23 models
    27816 
    27817 > show #!17 models
    27818 
    27819 > show #!16 models
    27820 
    27821 > show #!13 models
    27822 
    27823 > show #!12 models
    27824 
    27825 > view orient
    27826 
    27827 > turn x 90
    27828 
    27829 [Repeated 2 time(s)]
    27830 
    27831 > turn z -0.1
    27832 
    27833 [Repeated 4 time(s)]
    27834 
    27835 > ui tool show "Side View"
    27836 
    27837 > View name Side1
    27838 
    27839 Unknown command: View name Side1 
    27840 
    27841 > view name Side1
    27842 
    27843 > turn x 45
    27844 
    27845 > view name Tilt45
    27846 
    27847 > hide #!12 models
    27848 
    27849 > hide #!13 models
    27850 
    27851 > save /Users/shoichitachiyama/Desktop/CJ-local-tilt45_08242024.png
    27852 > supersample 2 transparentBackground true
    27853 
    27854 > view Side1
    27855 
    27856 > turn x 90
    27857 
    27858 > save /Users/shoichitachiyama/Desktop/CJ-local-Top_08242024.png supersample 2
    27859 > transparentBackground true
    27860 
    27861 > save /Users/shoichitachiyama/Desktop/CJ-local-Top2_08242024.png supersample
    27862 > 2 transparentBackground true
    27863 
    27864 > view Side1
    27865 
    27866 > show #!12 models
    27867 
    27868 > show #!13 models
    27869 
    27870 > save /Users/shoichitachiyama/Desktop/CJ-local-Side_08242024.png supersample
    27871 > 2 transparentBackground true
    27872 
    27873 > save /Volumes/Backup-95/Chimera-2023/C.jejuni_motor_April_2024/For-2nd-
    27874 > manuscript/Start_Aug_2024/Local-ref-PflAB/Develop-model-Figure.cxs
    27875 > includeMaps true
    27876 
    27877 ——— End of log from Sat Aug 24 21:36:37 2024 ———
    27878 
    27879 opened ChimeraX session 
    27880 
    27881 > hide #!12 models
    27882 
    27883 > show #!12 models
    27884 
    27885 > hide #!13 models
    27886 
    27887 > hide #!12 models
    27888 
    27889 > hide #!16 models
    27890 
    27891 > show #!16 models
    27892 
    27893 > hide #!17 models
    27894 
    27895 > hide #!18 models
    27896 
    27897 > hide #!19 models
    27898 
    27899 > hide #!20 models
    27900 
    27901 > show #!20 models
    27902 
    27903 > hide #!20 models
    27904 
    27905 > hide #!21 models
    27906 
    27907 > show #!21 models
    27908 
    27909 > hide #!22 models
    27910 
    27911 > show #!22 models
    27912 
    27913 > hide #!22 models
    27914 
    27915 > hide #!24 models
    27916 
    27917 > hide #!33 models
    27918 
    27919 > hide #!34 models
    27920 
    27921 > hide #!35 models
    27922 
    27923 > hide #!21 models
    27924 
    27925 > hide #!32 models
    27926 
    27927 > show #!32 models
    27928 
    27929 > hide #!32 models
    27930 
    27931 > close session
    27932 
    27933 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    27934 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    27935 > refinment/For-Chimera-PflAB/Rev-CJFlgYPlfAB-msk-2.1A.mrc"
    27936 
    27937 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #1, grid size 200,200,200, pixel 2.14,
    27938 shown at level 0.047, step 1, values float32 
    27939 
    27940 > volume #1 level 0.002308
    27941 
    27942 > volume #1 level 0.001238
    27943 
    27944 > ui tool show "Segment Map"
    27945 
    27946 Segmenting Rev-CJFlgYPlfAB-msk-2.1A.mrc, density threshold 0.001238 
    27947 Showing 336 region surfaces 
    27948 6595 watershed regions, grouped to 336 regions 
    27949 Showing Rev-CJFlgYPlfAB-msk-2.1A.seg - 336 regions, 336 surfaces 
    27950 
    27951 > select #2.52
    27952 
    27953 1 model selected 
    27954 
    27955 > select add #2.224
    27956 
    27957 2 models selected 
    27958 
    27959 > select add #2.191
    27960 
    27961 3 models selected 
    27962 
    27963 > select add #2.20
    27964 
    27965 4 models selected 
    27966 
    27967 > select add #2.7
    27968 
    27969 5 models selected 
    27970 
    27971 > hide #!1 models
    27972 
    27973 Grouped 5 regions 
    27974 
    27975 > select add #2.11
    27976 
    27977 2 models selected 
    27978 Grouped 2 regions 
    27979 
    27980 The cached device pixel ratio value was stale on window expose. Please file a
    27981 QTBUG which explains how to reproduce. 
    27982 
    27983 Opened Rev-CJFlgYPlfAB-msk-2.1A_imasked as #3, grid size 200,200,200, pixel
    27984 2.14, shown at step 1, values float32 
    27985 
    27986 The cached device pixel ratio value was stale on window expose. Please file a
    27987 QTBUG which explains how to reproduce. 
    27988 
    27989 [Repeated 2 time(s)]
    27990 
    27991 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/LP-ring.mrc
    27992 > models #3
    27993 
    27994 The cached device pixel ratio value was stale on window expose. Please file a
    27995 QTBUG which explains how to reproduce. 
    27996 
    27997 Opened Rev-CJFlgYPlfAB-msk-2.1A_imasked as #4, grid size 200,200,200, pixel
    27998 2.14, shown at step 1, values float32 
    27999 Segmenting Rev-CJFlgYPlfAB-msk-2.1A_imasked, density threshold 0.001238 
    28000 Showing 330 region surfaces 
    28001 6371 watershed regions, grouped to 330 regions 
    28002 Showing Rev-CJFlgYPlfAB-msk-2.seg - 330 regions, 330 surfaces 
    28003 
    28004 > hide #!4 models
    28005 
    28006 > hide #!3 models
    28007 
    28008 > select #2.160
    28009 
    28010 1 model selected 
    28011 
    28012 > select add #2.5
    28013 
    28014 2 models selected 
    28015 
    28016 > select add #2.107
    28017 
    28018 3 models selected 
    28019 
    28020 > select add #2.15
    28021 
    28022 4 models selected 
    28023 Grouped 4 regions 
    28024 
    28025 > select add #2.44
    28026 
    28027 2 models selected 
    28028 
    28029 > select subtract #2.44
    28030 
    28031 1 model selected 
    28032 Opened Rev-CJFlgYPlfAB-msk-2_imasked as #5, grid size 200,200,200, pixel 2.14,
    28033 shown at step 1, values float32 
    28034 
    28035 The cached device pixel ratio value was stale on window expose. Please file a
    28036 QTBUG which explains how to reproduce. 
    28037 
    28038 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Other.mrc
    28039 > models #5
    28040 
    28041 Opened Rev-CJFlgYPlfAB-msk-2_imasked as #6, grid size 200,200,200, pixel 2.14,
    28042 shown at step 1, values float32 
    28043 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked, density threshold 0.001238 
    28044 Showing 326 region surfaces 
    28045 6227 watershed regions, grouped to 326 regions 
    28046 Showing Rev-CJFlgYPlfAB-msk-2_imasked.seg - 326 regions, 326 surfaces 
    28047 
    28048 > hide #!5 models
    28049 
    28050 > select #2.42
    28051 
    28052 1 model selected 
    28053 
    28054 > select add #2.182
    28055 
    28056 2 models selected 
    28057 
    28058 > select add #2.197
    28059 
    28060 3 models selected 
    28061 
    28062 > select add #2.156
    28063 
    28064 4 models selected 
    28065 
    28066 > select add #2.132
    28067 
    28068 5 models selected 
    28069 
    28070 > select add #2.85
    28071 
    28072 6 models selected 
    28073 
    28074 > select add #2.69
    28075 
    28076 7 models selected 
    28077 
    28078 > select add #2.72
    28079 
    28080 8 models selected 
    28081 
    28082 > select add #2.245
    28083 
    28084 9 models selected 
    28085 
    28086 > select add #2.195
    28087 
    28088 10 models selected 
    28089 
    28090 > select add #2.171
    28091 
    28092 11 models selected 
    28093 
    28094 > select add #2.151
    28095 
    28096 12 models selected 
    28097 
    28098 > select add #2.78
    28099 
    28100 13 models selected 
    28101 
    28102 > select add #2.117
    28103 
    28104 14 models selected 
    28105 
    28106 > select add #2.193
    28107 
    28108 15 models selected 
    28109 
    28110 > select add #2.209
    28111 
    28112 16 models selected 
    28113 
    28114 > select add #2.212
    28115 
    28116 17 models selected 
    28117 
    28118 > select add #2.191
    28119 
    28120 18 models selected 
    28121 
    28122 > select add #2.226
    28123 
    28124 19 models selected 
    28125 
    28126 > select add #2.161
    28127 
    28128 20 models selected 
    28129 
    28130 > select add #2.127
    28131 
    28132 21 models selected 
    28133 
    28134 > select add #2.141
    28135 
    28136 22 models selected 
    28137 
    28138 > select add #2.146
    28139 
    28140 23 models selected 
    28141 
    28142 > select add #2.76
    28143 
    28144 24 models selected 
    28145 
    28146 > hide #!6 models
    28147 
    28148 > select add #2.252
    28149 
    28150 25 models selected 
    28151 
    28152 > select add #2.260
    28153 
    28154 26 models selected 
    28155 
    28156 > select add #2.292
    28157 
    28158 27 models selected 
    28159 
    28160 > select add #2.110
    28161 
    28162 28 models selected 
    28163 
    28164 > select add #2.261
    28165 
    28166 29 models selected 
    28167 
    28168 > select add #2.241
    28169 
    28170 30 models selected 
    28171 
    28172 > select add #2.190
    28173 
    28174 31 models selected 
    28175 
    28176 > select add #2.131
    28177 
    28178 32 models selected 
    28179 
    28180 > select add #2.214
    28181 
    28182 33 models selected 
    28183 
    28184 > select add #2.159
    28185 
    28186 34 models selected 
    28187 
    28188 > select add #2.123
    28189 
    28190 35 models selected 
    28191 
    28192 > select add #2.97
    28193 
    28194 36 models selected 
    28195 
    28196 > select add #2.263
    28197 
    28198 37 models selected 
    28199 
    28200 > select add #2.256
    28201 
    28202 38 models selected 
    28203 
    28204 > select add #2.8
    28205 
    28206 39 models selected 
    28207 
    28208 > select add #2.106
    28209 
    28210 40 models selected 
    28211 
    28212 > select add #2.66
    28213 
    28214 41 models selected 
    28215 
    28216 > select add #2.273
    28217 
    28218 42 models selected 
    28219 
    28220 > select add #2.270
    28221 
    28222 43 models selected 
    28223 
    28224 > select add #2.246
    28225 
    28226 44 models selected 
    28227 
    28228 > select add #2.183
    28229 
    28230 45 models selected 
    28231 
    28232 > select add #2.138
    28233 
    28234 46 models selected 
    28235 
    28236 > select add #2.208
    28237 
    28238 47 models selected 
    28239 Grouped 47 regions 
    28240 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked as #7, grid size 200,200,200,
    28241 pixel 2.14, shown at step 1, values float32 
    28242 
    28243 The cached device pixel ratio value was stale on window expose. Please file a
    28244 QTBUG which explains how to reproduce. 
    28245 
    28246 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Basal-
    28247 > disk.mrc models #7
    28248 
    28249 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked as #8, grid size 200,200,200,
    28250 pixel 2.14, shown at step 1, values float32 
    28251 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked, density threshold 0.001238 
    28252 Showing 279 region surfaces 
    28253 5451 watershed regions, grouped to 279 regions 
    28254 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked.seg - 279 regions, 279 surfaces 
    28255 
    28256 > hide #!7 models
    28257 
    28258 > hide #!8 models
    28259 
    28260 Drag select of 7449, 12517 of 12600 triangles, 7491, 9665 of 9824 triangles,
    28261 7584, 7688, 7659, 7229, 6847, 3925 of 4688 triangles, 7197, 6853, 1512 of 4224
    28262 triangles, 6825, 1357 of 4016 triangles, 6739, 1277 of 3888 triangles, 7205,
    28263 3917 of 3976 triangles, 6098, 811 of 3972 triangles, 7562, 550 of 4888
    28264 triangles, 7448, 5755, 2371 of 3760 triangles, 6371, 58 of 3076 triangles,
    28265 7476, 7706, 57 of 3484 triangles, 7598, 557 of 3328 triangles, 7639, 7605,
    28266 7539, 1984 of 2320 triangles, 6010, 7350, 5448, 7351, 7602, 2872 
    28267 
    28268 > select add #2.267
    28269 
    28270 30 models selected 
    28271 
    28272 > select add #2.252
    28273 
    28274 31 models selected 
    28275 Grouped 31 regions 
    28276 
    28277 > select clear
    28278 
    28279 > select #2.152
    28280 
    28281 1 model selected 
    28282 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked as #9, grid size
    28283 200,200,200, pixel 2.14, shown at step 1, values float32 
    28284 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked, density threshold
    28285 0.001238 
    28286 Showing 248 region surfaces 
    28287 5248 watershed regions, grouped to 248 regions 
    28288 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked.seg - 248 regions, 248
    28289 surfaces 
    28290 
    28291 > select #2.86
    28292 
    28293 1 model selected 
    28294 
    28295 > select add #2.53
    28296 
    28297 2 models selected 
    28298 
    28299 > select add #2.141
    28300 
    28301 3 models selected 
    28302 
    28303 > select add #2.4
    28304 
    28305 4 models selected 
    28306 
    28307 > select add #2.99
    28308 
    28309 5 models selected 
    28310 
    28311 > select add #2.161
    28312 
    28313 6 models selected 
    28314 
    28315 > select add #2.88
    28316 
    28317 7 models selected 
    28318 
    28319 > select add #2.25
    28320 
    28321 8 models selected 
    28322 
    28323 > select add #2.118
    28324 
    28325 9 models selected 
    28326 
    28327 > select add #2.75
    28328 
    28329 10 models selected 
    28330 
    28331 > select add #2.56
    28332 
    28333 11 models selected 
    28334 
    28335 > select add #2.148
    28336 
    28337 12 models selected 
    28338 
    28339 > select add #2.73
    28340 
    28341 13 models selected 
    28342 
    28343 > select add #2.32
    28344 
    28345 14 models selected 
    28346 
    28347 > select add #2.144
    28348 
    28349 15 models selected 
    28350 
    28351 > select add #2.101
    28352 
    28353 16 models selected 
    28354 
    28355 > select add #2.46
    28356 
    28357 17 models selected 
    28358 
    28359 > select add #2.155
    28360 
    28361 18 models selected 
    28362 
    28363 > select add #2.89
    28364 
    28365 19 models selected 
    28366 
    28367 > select add #2.95
    28368 
    28369 20 models selected 
    28370 
    28371 > select add #2.34
    28372 
    28373 21 models selected 
    28374 
    28375 > select add #2.152
    28376 
    28377 22 models selected 
    28378 
    28379 > select add #2.110
    28380 
    28381 23 models selected 
    28382 
    28383 > select add #2.12
    28384 
    28385 24 models selected 
    28386 
    28387 > select add #2.137
    28388 
    28389 25 models selected 
    28390 
    28391 > select add #2.16
    28392 
    28393 26 models selected 
    28394 
    28395 > select add #2.97
    28396 
    28397 27 models selected 
    28398 
    28399 > select add #2.96
    28400 
    28401 28 models selected 
    28402 
    28403 > select add #2.170
    28404 
    28405 29 models selected 
    28406 
    28407 > select add #2.178
    28408 
    28409 30 models selected 
    28410 
    28411 > select add #2.47
    28412 
    28413 31 models selected 
    28414 
    28415 > select add #2.87
    28416 
    28417 32 models selected 
    28418 
    28419 > select add #2.43
    28420 
    28421 33 models selected 
    28422 
    28423 > select add #2.100
    28424 
    28425 34 models selected 
    28426 
    28427 > select add #2.90
    28428 
    28429 35 models selected 
    28430 
    28431 > select add #2.146
    28432 
    28433 36 models selected 
    28434 
    28435 > hide #!9 models
    28436 
    28437 Grouped 36 regions 
    28438 
    28439 > select clear
    28440 
    28441 > select #2.4
    28442 
    28443 1 model selected 
    28444 
    28445 > select clear
    28446 
    28447 > select #2.4
    28448 
    28449 1 model selected 
    28450 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked as #10, grid size
    28451 200,200,200, pixel 2.14, shown at step 1, values float32 
    28452 
    28453 The cached device pixel ratio value was stale on window expose. Please file a
    28454 QTBUG which explains how to reproduce. 
    28455 
    28456 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/PflC.mrc
    28457 > models #10
    28458 
    28459 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked as #11, grid size
    28460 200,200,200, pixel 2.14, shown at step 1, values float32 
    28461 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked, density
    28462 threshold 0.001238 
    28463 Showing 213 region surfaces 
    28464 4519 watershed regions, grouped to 213 regions 
    28465 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked.seg - 213
    28466 regions, 213 surfaces 
    28467 
    28468 > hide #!10 models
    28469 
    28470 > hide #!11 models
    28471 
    28472 > select #2.100
    28473 
    28474 1 model selected 
    28475 
    28476 > select add #2.92
    28477 
    28478 2 models selected 
    28479 
    28480 > select add #2.80
    28481 
    28482 3 models selected 
    28483 Grouped 3 regions 
    28484 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked as #12,
    28485 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    28486 
    28487 The cached device pixel ratio value was stale on window expose. Please file a
    28488 QTBUG which explains how to reproduce. 
    28489 
    28490 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/PflD.mrc
    28491 > models #12
    28492 
    28493 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked as #13,
    28494 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    28495 Segmenting Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked,
    28496 density threshold 0.001238 
    28497 Showing 210 region surfaces 
    28498 4459 watershed regions, grouped to 210 regions 
    28499 Showing Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked.seg -
    28500 210 regions, 210 surfaces 
    28501 
    28502 > hide #!12 models
    28503 
    28504 > hide #!13 models
    28505 
    28506 > show #!13 models
    28507 
    28508 > hide #!13 models
    28509 
    28510 > select #2.70
    28511 
    28512 1 model selected 
    28513 
    28514 > select add #2.54
    28515 
    28516 2 models selected 
    28517 
    28518 > select add #2.56
    28519 
    28520 3 models selected 
    28521 
    28522 > select add #2.39
    28523 
    28524 4 models selected 
    28525 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked_imasked
    28526 as #14, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    28527 
    28528 The cached device pixel ratio value was stale on window expose. Please file a
    28529 QTBUG which explains how to reproduce. 
    28530 
    28531 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/MotBpg.mrc
    28532 > models #14
    28533 
    28534 Opened Rev-CJFlgYPlfAB-msk-2_imasked_imasked_imasked_imasked_imasked_imasked
    28535 as #15, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    28536 Segmenting Rev-CJFlgYPlfAB-
    28537 msk-2_imasked_imasked_imasked_imasked_imasked_imasked, density threshold
    28538 0.001238 
    28539 Showing 206 region surfaces 
    28540 4420 watershed regions, grouped to 206 regions 
    28541 Showing Rev-CJFlgYPlfAB-
    28542 msk-2_imasked_imasked_imasked_imasked_imasked_imasked.seg - 206 regions, 206
    28543 surfaces 
    28544 
    28545 > hide #!14 models
    28546 
    28547 > select #2.44
    28548 
    28549 1 model selected 
    28550 Ungrouped to 3 regions 
    28551 Ungrouped to 10 regions 
    28552 
    28553 > select #2.213
    28554 
    28555 1 model selected 
    28556 
    28557 > select add #2.212
    28558 
    28559 2 models selected 
    28560 
    28561 > select add #2.217
    28562 
    28563 3 models selected 
    28564 
    28565 > select add #2.216
    28566 
    28567 4 models selected 
    28568 
    28569 > select add #2.100
    28570 
    28571 5 models selected 
    28572 
    28573 > hide #!15 models
    28574 
    28575 > select add #2.44
    28576 
    28577 6 models selected 
    28578 
    28579 > select subtract #2.212
    28580 
    28581 5 models selected 
    28582 
    28583 > select add #2.212
    28584 
    28585 6 models selected 
    28586 
    28587 > select add #2.211
    28588 
    28589 7 models selected 
    28590 Grouped 7 regions 
    28591 
    28592 > select add #2.68
    28593 
    28594 2 models selected 
    28595 Grouped 2 regions 
    28596 
    28597 > select add #2.218
    28598 
    28599 2 models selected 
    28600 Grouped 2 regions 
    28601 
    28602 > select clear
    28603 
    28604 > select #2.137
    28605 
    28606 1 model selected 
    28607 
    28608 > select #2.117
    28609 
    28610 1 model selected 
    28611 Ungrouped to 2 regions 
    28612 Ungrouped to 5 regions 
    28613 [Repeated 1 time(s)]
    28614 
    28615 > select #2.212
    28616 
    28617 1 model selected 
    28618 
    28619 > select add #2.117
    28620 
    28621 2 models selected 
    28622 
    28623 > select add #2.137
    28624 
    28625 3 models selected 
    28626 
    28627 > select add #2.99
    28628 
    28629 4 models selected 
    28630 
    28631 > select add #2.59
    28632 
    28633 5 models selected 
    28634 Grouped 5 regions 
    28635 
    28636 > select #2.86
    28637 
    28638 1 model selected 
    28639 Ungrouped to 4 regions 
    28640 Ungrouped to 10 regions 
    28641 Ungrouped to 7 regions 
    28642 Ungrouped to 0 regions 
    28643 
    28644 > select #2.207
    28645 
    28646 1 model selected 
    28647 
    28648 > select add #2.220
    28649 
    28650 2 models selected 
    28651 
    28652 > select add #2.99
    28653 
    28654 3 models selected 
    28655 
    28656 > select add #2.224
    28657 
    28658 4 models selected 
    28659 
    28660 > select add #2.225
    28661 
    28662 5 models selected 
    28663 
    28664 > select add #2.227
    28665 
    28666 6 models selected 
    28667 
    28668 > select add #2.72
    28669 
    28670 7 models selected 
    28671 
    28672 > select add #2.58
    28673 
    28674 8 models selected 
    28675 Grouped 8 regions 
    28676 
    28677 > select add #2.59
    28678 
    28679 2 models selected 
    28680 
    28681 > select #2.230
    28682 
    28683 1 model selected 
    28684 
    28685 > select #2.228
    28686 
    28687 1 model selected 
    28688 
    28689 > select #2.83
    28690 
    28691 1 model selected 
    28692 Ungrouped to 5 regions 
    28693 Ungrouped to 8 regions 
    28694 Ungrouped to 9 regions 
    28695 Ungrouped to 0 regions 
    28696 
    28697 > select #2.224
    28698 
    28699 1 model selected 
    28700 
    28701 > select add #2.221
    28702 
    28703 2 models selected 
    28704 
    28705 > select add #2.234
    28706 
    28707 3 models selected 
    28708 
    28709 > select add #2.236
    28710 
    28711 4 models selected 
    28712 
    28713 > select add #2.99
    28714 
    28715 5 models selected 
    28716 
    28717 > select add #2.71
    28718 
    28719 6 models selected 
    28720 
    28721 > select #2.50
    28722 
    28723 1 model selected 
    28724 
    28725 > select add #2.71
    28726 
    28727 2 models selected 
    28728 
    28729 > select add #2.236
    28730 
    28731 3 models selected 
    28732 
    28733 > select add #2.221
    28734 
    28735 4 models selected 
    28736 
    28737 > select #2.50
    28738 
    28739 1 model selected 
    28740 
    28741 > select add #2.71
    28742 
    28743 2 models selected 
    28744 
    28745 > select add #2.221
    28746 
    28747 3 models selected 
    28748 
    28749 > select add #2.236
    28750 
    28751 4 models selected 
    28752 
    28753 > select add #2.224
    28754 
    28755 5 models selected 
    28756 
    28757 > select add #2.234
    28758 
    28759 6 models selected 
    28760 
    28761 > select add #2.99
    28762 
    28763 7 models selected 
    28764 
    28765 > select add #2.237
    28766 
    28767 8 models selected 
    28768 Grouped 8 regions 
    28769 
    28770 > select add #2.58
    28771 
    28772 2 models selected 
    28773 Grouped 2 regions 
    28774 
    28775 > select add #2.59
    28776 
    28777 2 models selected 
    28778 
    28779 > select add #2.44
    28780 
    28781 3 models selected 
    28782 Grouped 3 regions 
    28783 
    28784 > select #2.54
    28785 
    28786 1 model selected 
    28787 
    28788 > select #2.54
    28789 
    28790 1 model selected 
    28791 Ungrouped to 5 regions 
    28792 Ungrouped to 7 regions 
    28793 Ungrouped to 12 regions 
    28794 Ungrouped to 0 regions 
    28795 
    28796 > select #2.237
    28797 
    28798 1 model selected 
    28799 
    28800 > select #2.71
    28801 
    28802 1 model selected 
    28803 
    28804 > select add #2.237
    28805 
    28806 2 models selected 
    28807 
    28808 > select add #2.244
    28809 
    28810 3 models selected 
    28811 
    28812 > select add #2.243
    28813 
    28814 4 models selected 
    28815 
    28816 > select add #2.226
    28817 
    28818 5 models selected 
    28819 
    28820 > select add #2.242
    28821 
    28822 6 models selected 
    28823 
    28824 > select add #2.69
    28825 
    28826 7 models selected 
    28827 
    28828 > select add #2.70
    28829 
    28830 8 models selected 
    28831 
    28832 > select add #2.193
    28833 
    28834 9 models selected 
    28835 
    28836 > select add #2.44
    28837 
    28838 10 models selected 
    28839 Grouped 10 regions 
    28840 
    28841 > select #2.82
    28842 
    28843 1 model selected 
    28844 
    28845 > select add #2.123
    28846 
    28847 2 models selected 
    28848 
    28849 > select add #2.29
    28850 
    28851 3 models selected 
    28852 
    28853 > select add #2.76
    28854 
    28855 4 models selected 
    28856 
    28857 > select add #2.166
    28858 
    28859 5 models selected 
    28860 
    28861 > select add #2.135
    28862 
    28863 6 models selected 
    28864 
    28865 > select add #2.170
    28866 
    28867 7 models selected 
    28868 
    28869 > select #2.76
    28870 
    28871 1 model selected 
    28872 
    28873 > select add #2.29
    28874 
    28875 2 models selected 
    28876 
    28877 > select subtract #2.77
    28878 
    28879 232 models selected 
    28880 
    28881 > select subtract #2.30
    28882 
    28883 231 models selected 
    28884 
    28885 > select subtract #2.166
    28886 
    28887 230 models selected 
    28888 
    28889 > select subtract #2.168
    28890 
    28891 229 models selected 
    28892 Grouped 229 regions 
    28893 
    28894 > undo
    28895 
    28896 Ungrouped to 233 regions 
    28897 
    28898 > select clear
    28899 
    28900 > select #2.30
    28901 
    28902 1 model selected 
    28903 
    28904 > select add #2.77
    28905 
    28906 2 models selected 
    28907 
    28908 > select add #2.29
    28909 
    28910 3 models selected 
    28911 
    28912 > select add #2.76
    28913 
    28914 4 models selected 
    28915 
    28916 > select add #2.166
    28917 
    28918 5 models selected 
    28919 
    28920 > select add #2.136
    28921 
    28922 6 models selected 
    28923 
    28924 > select subtract #2.136
    28925 
    28926 5 models selected 
    28927 
    28928 > select add #2.238
    28929 
    28930 6 models selected 
    28931 
    28932 > select add #2.239
    28933 
    28934 7 models selected 
    28935 Grouped 7 regions 
    28936 
    28937 > select #2.136
    28938 
    28939 1 model selected 
    28940 Ungrouped to 5 regions 
    28941 
    28942 > select #2.77
    28943 
    28944 1 model selected 
    28945 
    28946 > select add #2.1
    28947 
    28948 2 models selected 
    28949 Grouped 2 regions 
    28950 
    28951 > select #2.25
    28952 
    28953 1 model selected 
    28954 
    28955 > select #2.11
    28956 
    28957 1 model selected 
    28958 Ungrouped to 2 regions 
    28959 Ungrouped to 6 regions 
    28960 Ungrouped to 21 regions 
    28961 
    28962 > select #2.250
    28963 
    28964 1 model selected 
    28965 
    28966 > select add #2.246
    28967 
    28968 2 models selected 
    28969 
    28970 > select add #2.248
    28971 
    28972 3 models selected 
    28973 
    28974 > select add #2.254
    28975 
    28976 4 models selected 
    28977 
    28978 > select add #2.245
    28979 
    28980 5 models selected 
    28981 Grouped 5 regions 
    28982 
    28983 > select add #2.244
    28984 
    28985 2 models selected 
    28986 Grouped 2 regions 
    28987 
    28988 > select add #2.253
    28989 
    28990 2 models selected 
    28991 Grouped 2 regions 
    28992 
    28993 > select clear
    28994 
    28995 > select #2.11
    28996 
    28997 1 model selected 
    28998 
    28999 > select add #2.1
    29000 
    29001 2 models selected 
    29002 
    29003 > select add #2.25
    29004 
    29005 3 models selected 
    29006 
    29007 > select add #2.124
    29008 
    29009 4 models selected 
    29010 
    29011 > select subtract #2.1
    29012 
    29013 3 models selected 
    29014 
    29015 The cached device pixel ratio value was stale on window expose. Please file a
    29016 QTBUG which explains how to reproduce. 
    29017 
    29018 > select add #2.1
    29019 
    29020 4 models selected 
    29021 Grouped 4 regions 
    29022 
    29023 > select #2.213
    29024 
    29025 1 model selected 
    29026 
    29027 > select #2.31
    29028 
    29029 1 model selected 
    29030 Ungrouped to 15 regions 
    29031 
    29032 > select subtract #2.250
    29033 
    29034 14 models selected 
    29035 
    29036 > select subtract #2.263
    29037 
    29038 13 models selected 
    29039 
    29040 > select subtract #2.248
    29041 
    29042 12 models selected 
    29043 
    29044 > select subtract #2.168
    29045 
    29046 11 models selected 
    29047 
    29048 > select subtract #2.246
    29049 
    29050 10 models selected 
    29051 Grouped 10 regions 
    29052 
    29053 > select add #2.1
    29054 
    29055 2 models selected 
    29056 Grouped 2 regions 
    29057 
    29058 > select #2.231
    29059 
    29060 1 model selected 
    29061 
    29062 > select add #2.50
    29063 
    29064 2 models selected 
    29065 
    29066 > select add #2.1
    29067 
    29068 3 models selected 
    29069 Grouped 3 regions 
    29070 
    29071 > select #2.159
    29072 
    29073 1 model selected 
    29074 Ungrouped to 2 regions 
    29075 Ungrouped to 4 regions 
    29076 Ungrouped to 13 regions 
    29077 
    29078 > select #2.231
    29079 
    29080 1 model selected 
    29081 
    29082 > select add #2.244
    29083 
    29084 2 models selected 
    29085 
    29086 > select add #2.245
    29087 
    29088 3 models selected 
    29089 
    29090 > select add #2.238
    29091 
    29092 4 models selected 
    29093 
    29094 > select add #2.25
    29095 
    29096 5 models selected 
    29097 
    29098 > select add #2.11
    29099 
    29100 6 models selected 
    29101 Grouped 6 regions 
    29102 
    29103 > select add #2.1
    29104 
    29105 2 models selected 
    29106 Grouped 2 regions 
    29107 
    29108 > select clear
    29109 
    29110 > select #2.1
    29111 
    29112 1 model selected 
    29113 
    29114 > select clear
    29115 
    29116 > select #2.1
    29117 
    29118 1 model selected 
    29119 Ungrouped to 2 regions 
    29120 
    29121 > select #2.25
    29122 
    29123 1 model selected 
    29124 Ungrouped to 3 regions 
    29125 
    29126 > select #2.31
    29127 
    29128 1 model selected 
    29129 Ungrouped to 2 regions 
    29130 
    29131 > select #2.231
    29132 
    29133 1 model selected 
    29134 Ungrouped to 4 regions 
    29135 
    29136 > select #2.245
    29137 
    29138 1 model selected 
    29139 Ungrouped to 2 regions 
    29140 
    29141 > select #2.267
    29142 
    29143 1 model selected 
    29144 
    29145 > select #2.267
    29146 
    29147 1 model selected 
    29148 Ungrouped to 7 regions 
    29149 
    29150 > select #2.268
    29151 
    29152 1 model selected 
    29153 Ungrouped to 9 regions 
    29154 
    29155 > select #2.272
    29156 
    29157 1 model selected 
    29158 
    29159 > select #2.272
    29160 
    29161 1 model selected 
    29162 Ungrouped to 7 regions 
    29163 
    29164 > select #2.282
    29165 
    29166 1 model selected 
    29167 Ungrouped to 6 regions 
    29168 
    29169 > select #2.1
    29170 
    29171 1 model selected 
    29172 
    29173 > select add #2.275
    29174 
    29175 2 models selected 
    29176 
    29177 > select add #2.281
    29178 
    29179 3 models selected 
    29180 
    29181 > select add #2.276
    29182 
    29183 4 models selected 
    29184 
    29185 > select add #2.274
    29186 
    29187 5 models selected 
    29188 
    29189 > select add #2.244
    29190 
    29191 6 models selected 
    29192 
    29193 > select add #2.269
    29194 
    29195 7 models selected 
    29196 
    29197 > select add #2.271
    29198 
    29199 8 models selected 
    29200 
    29201 > select add #2.273
    29202 
    29203 9 models selected 
    29204 
    29205 > select add #2.238
    29206 
    29207 10 models selected 
    29208 Grouped 10 regions 
    29209 
    29210 > select #2.231
    29211 
    29212 1 model selected 
    29213 Ungrouped to 4 regions 
    29214 Ungrouped to 3 regions 
    29215 
    29216 > select #2.269
    29217 
    29218 1 model selected 
    29219 
    29220 > select add #2.1
    29221 
    29222 2 models selected 
    29223 
    29224 > select add #2.271
    29225 
    29226 3 models selected 
    29227 Grouped 3 regions 
    29228 
    29229 > select #2.267
    29230 
    29231 1 model selected 
    29232 
    29233 > select add #2.244
    29234 
    29235 2 models selected 
    29236 
    29237 > select add #2.274
    29238 
    29239 3 models selected 
    29240 
    29241 > select add #2.231
    29242 
    29243 4 models selected 
    29244 
    29245 > select add #2.273
    29246 
    29247 5 models selected 
    29248 
    29249 > select #2.1
    29250 
    29251 1 model selected 
    29252 
    29253 > select clear
    29254 
    29255 > select #2.1
    29256 
    29257 1 model selected 
    29258 
    29259 > select add #2.287
    29260 
    29261 2 models selected 
    29262 
    29263 > select add #2.270
    29264 
    29265 3 models selected 
    29266 
    29267 > select add #2.50
    29268 
    29269 4 models selected 
    29270 
    29271 > select add #2.11
    29272 
    29273 5 models selected 
    29274 
    29275 > select add #2.31
    29276 
    29277 6 models selected 
    29278 
    29279 > select add #2.245
    29280 
    29281 7 models selected 
    29282 Grouped 7 regions 
    29283 
    29284 > select #2.291
    29285 
    29286 1 model selected 
    29287 
    29288 > select add #2.289
    29289 
    29290 2 models selected 
    29291 
    29292 > select add #2.290
    29293 
    29294 3 models selected 
    29295 
    29296 > select #2.25
    29297 
    29298 1 model selected 
    29299 
    29300 > select add #2.1
    29301 
    29302 2 models selected 
    29303 Grouped 2 regions 
    29304 
    29305 > select clear
    29306 
    29307 > select #2.1
    29308 
    29309 1 model selected 
    29310 
    29311 > select clear
    29312 
    29313 Showing 278 region surfaces 
    29314 
    29315 > select #2.1
    29316 
    29317 1 model selected 
    29318 Opened Rev-CJFlgYPlfAB-
    29319 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #16, grid
    29320 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    29321 
    29322 The cached device pixel ratio value was stale on window expose. Please file a
    29323 QTBUG which explains how to reproduce. 
    29324 
    29325 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Cage.mrc
    29326 > models #16
    29327 
    29328 Opened Rev-CJFlgYPlfAB-
    29329 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #17, grid
    29330 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    29331 Segmenting Rev-CJFlgYPlfAB-
    29332 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    29333 threshold 0.001238 
    29334 Showing 203 region surfaces 
    29335 4214 watershed regions, grouped to 203 regions 
    29336 Showing Rev-CJFlgYPlfAB-
    29337 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 203
    29338 regions, 203 surfaces 
    29339 
    29340 > hide #!16 models
    29341 
    29342 > hide #!17 models
    29343 
    29344 > show #!17 models
    29345 
    29346 > hide #!17 models
    29347 
    29348 > show #!16 models
    29349 
    29350 > select #2.111
    29351 
    29352 1 model selected 
    29353 
    29354 > select add #2.60
    29355 
    29356 2 models selected 
    29357 
    29358 > select add #2.152
    29359 
    29360 3 models selected 
    29361 
    29362 > select add #2.160
    29363 
    29364 4 models selected 
    29365 
    29366 > select add #2.74
    29367 
    29368 5 models selected 
    29369 Grouped 5 regions 
    29370 
    29371 > select #2.39
    29372 
    29373 1 model selected 
    29374 Ungrouped to 2 regions 
    29375 Ungrouped to 7 regions 
    29376 Ungrouped to 13 regions 
    29377 Ungrouped to 12 regions 
    29378 Ungrouped to 0 regions 
    29379 
    29380 > select #2.160
    29381 
    29382 1 model selected 
    29383 
    29384 > select add #2.60
    29385 
    29386 2 models selected 
    29387 Grouped 2 regions 
    29388 
    29389 > select #2.60
    29390 
    29391 1 model selected 
    29392 
    29393 > select #2.43
    29394 
    29395 1 model selected 
    29396 Ungrouped to 5 regions 
    29397 Ungrouped to 12 regions 
    29398 Ungrouped to 7 regions 
    29399 Ungrouped to 0 regions 
    29400 
    29401 > select #16
    29402 
    29403 2 models selected 
    29404 
    29405 > select #2.240
    29406 
    29407 1 model selected 
    29408 
    29409 > select add #2.218
    29410 
    29411 2 models selected 
    29412 
    29413 > select subtract #2.240
    29414 
    29415 1 model selected 
    29416 Grouped 1 regions 
    29417 
    29418 > select add #2.240
    29419 
    29420 2 models selected 
    29421 Grouped 2 regions 
    29422 
    29423 > select add #2.60
    29424 
    29425 2 models selected 
    29426 Grouped 2 regions 
    29427 
    29428 > select #2.119
    29429 
    29430 1 model selected 
    29431 
    29432 > select #2.34
    29433 
    29434 1 model selected 
    29435 Ungrouped to 2 regions 
    29436 Ungrouped to 4 regions 
    29437 Ungrouped to 19 regions 
    29438 Ungrouped to 6 regions 
    29439 Ungrouped to 0 regions 
    29440 
    29441 > select #2.240
    29442 
    29443 1 model selected 
    29444 
    29445 > select add #2.258
    29446 
    29447 2 models selected 
    29448 
    29449 > select add #2.119
    29450 
    29451 3 models selected 
    29452 
    29453 > select add #2.48
    29454 
    29455 4 models selected 
    29456 
    29457 > select #2.48
    29458 
    29459 1 model selected 
    29460 Ungrouped to 2 regions 
    29461 Ungrouped to 8 regions 
    29462 
    29463 > select #2.266
    29464 
    29465 1 model selected 
    29466 
    29467 > select add #2.119
    29468 
    29469 2 models selected 
    29470 
    29471 > select add #2.240
    29472 
    29473 3 models selected 
    29474 
    29475 > select add #2.258
    29476 
    29477 4 models selected 
    29478 Grouped 4 regions 
    29479 
    29480 > select add #2.60
    29481 
    29482 2 models selected 
    29483 Grouped 2 regions 
    29484 
    29485 > set bgColor black
    29486 
    29487 > select #2.60
    29488 
    29489 1 model selected 
    29490 Ungrouped to 2 regions 
    29491 Ungrouped to 6 regions 
    29492 Ungrouped to 12 regions 
    29493 Ungrouped to 13 regions 
    29494 
    29495 > select #2.284
    29496 
    29497 1 model selected 
    29498 
    29499 > select add #2.283
    29500 
    29501 2 models selected 
    29502 Ungrouped to 5 regions 
    29503 Ungrouped to 12 regions 
    29504 Ungrouped to 24 regions 
    29505 
    29506 > select #2.316
    29507 
    29508 1 model selected 
    29509 
    29510 > select add #2.313
    29511 
    29512 2 models selected 
    29513 
    29514 > select add #2.314
    29515 
    29516 3 models selected 
    29517 
    29518 > select add #2.298
    29519 
    29520 4 models selected 
    29521 
    29522 > select add #2.309
    29523 
    29524 5 models selected 
    29525 
    29526 > select add #2.315
    29527 
    29528 6 models selected 
    29529 
    29530 > select add #2.307
    29531 
    29532 7 models selected 
    29533 
    29534 > select add #2.310
    29535 
    29536 8 models selected 
    29537 
    29538 > select add #2.303
    29539 
    29540 9 models selected 
    29541 
    29542 > select add #2.302
    29543 
    29544 10 models selected 
    29545 
    29546 > select add #2.312
    29547 
    29548 11 models selected 
    29549 
    29550 > select add #2.311
    29551 
    29552 12 models selected 
    29553 
    29554 > select clear
    29555 
    29556 > select #2.278
    29557 
    29558 1 model selected 
    29559 
    29560 > select add #2.60
    29561 
    29562 2 models selected 
    29563 
    29564 > select add #2.287
    29565 
    29566 3 models selected 
    29567 
    29568 > select add #2.277
    29569 
    29570 4 models selected 
    29571 
    29572 > select add #2.317
    29573 
    29574 5 models selected 
    29575 
    29576 > select add #2.276
    29577 
    29578 6 models selected 
    29579 
    29580 > select add #2.308
    29581 
    29582 7 models selected 
    29583 
    29584 > select add #2.273
    29585 
    29586 8 models selected 
    29587 
    29588 > select add #2.285
    29589 
    29590 9 models selected 
    29591 
    29592 > select add #2.286
    29593 
    29594 10 models selected 
    29595 
    29596 > select add #2.306
    29597 
    29598 11 models selected 
    29599 
    29600 > select add #2.304
    29601 
    29602 12 models selected 
    29603 
    29604 > select add #2.301
    29605 
    29606 13 models selected 
    29607 
    29608 > select add #2.288
    29609 
    29610 14 models selected 
    29611 
    29612 > select add #2.299
    29613 
    29614 15 models selected 
    29615 
    29616 > select add #2.258
    29617 
    29618 16 models selected 
    29619 
    29620 > select add #2.246
    29621 
    29622 17 models selected 
    29623 
    29624 > select add #2.268
    29625 
    29626 18 models selected 
    29627 
    29628 > select add #2.279
    29629 
    29630 19 models selected 
    29631 
    29632 > select add #2.281
    29633 
    29634 20 models selected 
    29635 
    29636 > select add #2.270
    29637 
    29638 21 models selected 
    29639 
    29640 > select add #2.271
    29641 
    29642 22 models selected 
    29643 
    29644 > select add #2.269
    29645 
    29646 23 models selected 
    29647 
    29648 > select add #2.272
    29649 
    29650 24 models selected 
    29651 
    29652 > select add #2.119
    29653 
    29654 25 models selected 
    29655 Grouped 25 regions 
    29656 
    29657 > select #2.240
    29658 
    29659 1 model selected 
    29660 
    29661 > select add #2.60
    29662 
    29663 2 models selected 
    29664 Grouped 2 regions 
    29665 
    29666 > select #2.280
    29667 
    29668 1 model selected 
    29669 
    29670 > select add #2.300
    29671 
    29672 2 models selected 
    29673 
    29674 > select add #2.274
    29675 
    29676 3 models selected 
    29677 
    29678 > select add #2.292
    29679 
    29680 4 models selected 
    29681 
    29682 > select subtract #2.292
    29683 
    29684 3 models selected 
    29685 
    29686 > select add #2.275
    29687 
    29688 4 models selected 
    29689 Grouped 4 regions 
    29690 
    29691 > select add #2.247
    29692 
    29693 2 models selected 
    29694 Ungrouped to 4 regions 
    29695 Ungrouped to 2 regions 
    29696 
    29697 > select #2.258
    29698 
    29699 1 model selected 
    29700 
    29701 > select add #2.247
    29702 
    29703 2 models selected 
    29704 
    29705 > select add #2.246
    29706 
    29707 3 models selected 
    29708 
    29709 > select add #2.269
    29710 
    29711 4 models selected 
    29712 
    29713 > select add #2.119
    29714 
    29715 5 models selected 
    29716 
    29717 > select add #2.240
    29718 
    29719 6 models selected 
    29720 
    29721 > select add #2.60
    29722 
    29723 7 models selected 
    29724 Grouped 7 regions 
    29725 Showing 280 region surfaces 
    29726 
    29727 > select clear
    29728 
    29729 > select #16
    29730 
    29731 2 models selected 
    29732 
    29733 > select #2.49
    29734 
    29735 1 model selected 
    29736 Ungrouped to 2 regions 
    29737 Ungrouped to 10 regions 
    29738 Ungrouped to 11 regions 
    29739 
    29740 > select add #2.60
    29741 
    29742 12 models selected 
    29743 
    29744 > select #2.119
    29745 
    29746 1 model selected 
    29747 
    29748 > select add #2.274
    29749 
    29750 2 models selected 
    29751 
    29752 > select add #2.276
    29753 
    29754 3 models selected 
    29755 
    29756 > select subtract #2.276
    29757 
    29758 2 models selected 
    29759 
    29760 > select clear
    29761 
    29762 > select #2.60
    29763 
    29764 1 model selected 
    29765 
    29766 > select add #2.276
    29767 
    29768 2 models selected 
    29769 
    29770 > select add #2.277
    29771 
    29772 3 models selected 
    29773 
    29774 > select add #2.281
    29775 
    29776 4 models selected 
    29777 
    29778 > select add #2.278
    29779 
    29780 5 models selected 
    29781 
    29782 > select add #2.280
    29783 
    29784 6 models selected 
    29785 Grouped 6 regions 
    29786 
    29787 > select add #2.275
    29788 
    29789 2 models selected 
    29790 Grouped 2 regions 
    29791 
    29792 > select add #2.279
    29793 
    29794 2 models selected 
    29795 Grouped 2 regions 
    29796 
    29797 > select add #2.283
    29798 
    29799 2 models selected 
    29800 Grouped 2 regions 
    29801 Showing 289 region surfaces 
    29802 
    29803 > select clear
    29804 
    29805 > select #2.60
    29806 
    29807 1 model selected 
    29808 
    29809 > hide #!16 models
    29810 
    29811 Opened Rev-CJFlgYPlfAB-
    29812 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #18,
    29813 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    29814 
    29815 The cached device pixel ratio value was stale on window expose. Please file a
    29816 QTBUG which explains how to reproduce. 
    29817 
    29818 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Cage-
    29819 > connection.mrc models #18
    29820 
    29821 Opened Rev-CJFlgYPlfAB-
    29822 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #19,
    29823 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    29824 Segmenting Rev-CJFlgYPlfAB-
    29825 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    29826 threshold 0.001238 
    29827 Showing 205 region surfaces 
    29828 4150 watershed regions, grouped to 205 regions 
    29829 Showing Rev-CJFlgYPlfAB-
    29830 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg -
    29831 205 regions, 205 surfaces 
    29832 
    29833 > hide #!19 models
    29834 
    29835 > hide #!18 models
    29836 
    29837 > select #2.16
    29838 
    29839 1 model selected 
    29840 
    29841 > select add #2.24
    29842 
    29843 2 models selected 
    29844 
    29845 > select add #2.118
    29846 
    29847 3 models selected 
    29848 
    29849 > select add #2.133
    29850 
    29851 4 models selected 
    29852 
    29853 > select add #2.109
    29854 
    29855 5 models selected 
    29856 
    29857 > select add #2.18
    29858 
    29859 6 models selected 
    29860 
    29861 > select add #2.81
    29862 
    29863 7 models selected 
    29864 
    29865 > select add #2.9
    29866 
    29867 8 models selected 
    29868 
    29869 > select add #2.54
    29870 
    29871 9 models selected 
    29872 
    29873 > select add #2.20
    29874 
    29875 10 models selected 
    29876 
    29877 > select add #2.85
    29878 
    29879 11 models selected 
    29880 
    29881 > select add #2.126
    29882 
    29883 12 models selected 
    29884 Grouped 12 regions 
    29885 
    29886 > select add #2.104
    29887 
    29888 2 models selected 
    29889 
    29890 > select add #2.35
    29891 
    29892 3 models selected 
    29893 
    29894 > select add #2.98
    29895 
    29896 4 models selected 
    29897 
    29898 > select add #2.30
    29899 
    29900 5 models selected 
    29901 
    29902 > select add #2.136
    29903 
    29904 6 models selected 
    29905 
    29906 > select add #2.31
    29907 
    29908 7 models selected 
    29909 
    29910 > select add #2.89
    29911 
    29912 8 models selected 
    29913 
    29914 > select add #2.97
    29915 
    29916 9 models selected 
    29917 
    29918 > select add #2.153
    29919 
    29920 10 models selected 
    29921 
    29922 > select add #2.96
    29923 
    29924 11 models selected 
    29925 
    29926 > select add #2.116
    29927 
    29928 12 models selected 
    29929 Grouped 12 regions 
    29930 
    29931 > select add #2.103
    29932 
    29933 2 models selected 
    29934 
    29935 > select add #2.67
    29936 
    29937 3 models selected 
    29938 
    29939 > select add #2.45
    29940 
    29941 4 models selected 
    29942 
    29943 > select add #2.26
    29944 
    29945 5 models selected 
    29946 
    29947 > select add #2.70
    29948 
    29949 6 models selected 
    29950 
    29951 > select add #2.110
    29952 
    29953 7 models selected 
    29954 
    29955 > select add #2.58
    29956 
    29957 8 models selected 
    29958 Grouped 8 regions 
    29959 
    29960 > select clear
    29961 
    29962 > select #2.9
    29963 
    29964 1 model selected 
    29965 Opened Rev-CJFlgYPlfAB-
    29966 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    29967 as #20, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    29968 
    29969 The cached device pixel ratio value was stale on window expose. Please file a
    29970 QTBUG which explains how to reproduce. 
    29971 
    29972 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Crings.mrc
    29973 > models #20
    29974 
    29975 Opened Rev-CJFlgYPlfAB-
    29976 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    29977 as #21, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    29978 Segmenting Rev-CJFlgYPlfAB-
    29979 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    29980 density threshold 0.001238 
    29981 Showing 175 region surfaces 
    29982 3429 watershed regions, grouped to 175 regions 
    29983 Showing Rev-CJFlgYPlfAB-
    29984 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    29985 - 175 regions, 175 surfaces 
    29986 
    29987 > hide #!20 models
    29988 
    29989 > select #2.14
    29990 
    29991 1 model selected 
    29992 
    29993 > select add #2.65
    29994 
    29995 2 models selected 
    29996 
    29997 > select add #2.44
    29998 
    29999 3 models selected 
    30000 Grouped 3 regions 
    30001 
    30002 > select clear
    30003 
    30004 > select #2.14
    30005 
    30006 1 model selected 
    30007 Opened Rev-CJFlgYPlfAB-
    30008 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30009 as #22, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30010 
    30011 The cached device pixel ratio value was stale on window expose. Please file a
    30012 QTBUG which explains how to reproduce. 
    30013 
    30014 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/FlaA.mrc
    30015 > models #22
    30016 
    30017 Opened Rev-CJFlgYPlfAB-
    30018 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30019 as #23, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30020 Segmenting Rev-CJFlgYPlfAB-
    30021 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    30022 density threshold 0.001238 
    30023 Showing 172 region surfaces 
    30024 3324 watershed regions, grouped to 172 regions 
    30025 Showing Rev-CJFlgYPlfAB-
    30026 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    30027 - 172 regions, 172 surfaces 
    30028 
    30029 > hide #!21 models
    30030 
    30031 > hide #!22 models
    30032 
    30033 > hide #!23 models
    30034 
    30035 > select #2.31
    30036 
    30037 1 model selected 
    30038 
    30039 > select #2.11
    30040 
    30041 1 model selected 
    30042 
    30043 > select add #2.1
    30044 
    30045 2 models selected 
    30046 
    30047 > select add #2.25
    30048 
    30049 3 models selected 
    30050 
    30051 > select add #2.107
    30052 
    30053 4 models selected 
    30054 Grouped 4 regions 
    30055 
    30056 > select add #2.21
    30057 
    30058 2 models selected 
    30059 
    30060 > select add #2.31
    30061 
    30062 3 models selected 
    30063 
    30064 > select add #2.61
    30065 
    30066 4 models selected 
    30067 Grouped 4 regions 
    30068 
    30069 > select #2.1
    30070 
    30071 1 model selected 
    30072 Ungrouped to 4 regions 
    30073 
    30074 > select subtract #2.21
    30075 
    30076 3 models selected 
    30077 Grouped 3 regions 
    30078 
    30079 > select clear
    30080 
    30081 > select #2.1
    30082 
    30083 1 model selected 
    30084 Showing 167 region surfaces 
    30085 Opened Rev-CJFlgYPlfAB-
    30086 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30087 as #24, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30088 
    30089 The cached device pixel ratio value was stale on window expose. Please file a
    30090 QTBUG which explains how to reproduce. 
    30091 
    30092 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/MS-ring.mrc
    30093 > models #24
    30094 
    30095 Opened Rev-CJFlgYPlfAB-
    30096 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30097 as #25, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30098 Segmenting Rev-CJFlgYPlfAB-
    30099 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    30100 density threshold 0.001238 
    30101 Showing 166 region surfaces 
    30102 3094 watershed regions, grouped to 166 regions 
    30103 Showing Rev-CJFlgYPlfAB-
    30104 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    30105 - 166 regions, 166 surfaces 
    30106 
    30107 > hide #!24 models
    30108 
    30109 > hide #!25 models
    30110 
    30111 > select #2.9
    30112 
    30113 1 model selected 
    30114 
    30115 > select add #2.7
    30116 
    30117 2 models selected 
    30118 
    30119 > select add #2.8
    30120 
    30121 3 models selected 
    30122 
    30123 > select add #2.91
    30124 
    30125 4 models selected 
    30126 
    30127 > select add #2.95
    30128 
    30129 5 models selected 
    30130 
    30131 > select add #2.99
    30132 
    30133 6 models selected 
    30134 
    30135 > select add #2.2
    30136 
    30137 7 models selected 
    30138 
    30139 > select add #2.18
    30140 
    30141 8 models selected 
    30142 
    30143 > select add #2.13
    30144 
    30145 9 models selected 
    30146 
    30147 > select add #2.40
    30148 
    30149 10 models selected 
    30150 
    30151 > select add #2.74
    30152 
    30153 11 models selected 
    30154 
    30155 > select add #2.78
    30156 
    30157 12 models selected 
    30158 
    30159 > select add #2.14
    30160 
    30161 13 models selected 
    30162 
    30163 > select add #2.46
    30164 
    30165 14 models selected 
    30166 
    30167 > select add #2.49
    30168 
    30169 15 models selected 
    30170 
    30171 > select add #2.20
    30172 
    30173 16 models selected 
    30174 Showing 166 region surfaces 
    30175 
    30176 > select clear
    30177 
    30178 > select #2.20
    30179 
    30180 1 model selected 
    30181 
    30182 > select clear
    30183 
    30184 Drag select of 4374, 4356, 4394, 4396, 4381, 4373, 4382, 4304, 4269, 4297,
    30185 4036, 4309, 3974, 3887, 3715 
    30186 Grouped 15 regions 
    30187 Showing 152 region surfaces 
    30188 
    30189 > select clear
    30190 
    30191 > select #2.2
    30192 
    30193 1 model selected 
    30194 Opened Rev-CJFlgYPlfAB-
    30195 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30196 as #26, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30197 
    30198 The cached device pixel ratio value was stale on window expose. Please file a
    30199 QTBUG which explains how to reproduce. 
    30200 
    30201 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/Stator-
    30202 > region.mrc models #26
    30203 
    30204 Opened Rev-CJFlgYPlfAB-
    30205 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30206 as #27, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30207 Segmenting Rev-CJFlgYPlfAB-
    30208 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    30209 density threshold 0.001238 
    30210 Showing 149 region surfaces 
    30211 2640 watershed regions, grouped to 149 regions 
    30212 Showing Rev-CJFlgYPlfAB-
    30213 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    30214 - 149 regions, 149 surfaces 
    30215 
    30216 > hide #!26 models
    30217 
    30218 > show #!26 models
    30219 
    30220 > hide #!26 models
    30221 
    30222 > select #2.51
    30223 
    30224 1 model selected 
    30225 
    30226 > select add #2.62
    30227 
    30228 2 models selected 
    30229 
    30230 > select add #2.16
    30231 
    30232 3 models selected 
    30233 
    30234 > select add #2.26
    30235 
    30236 4 models selected 
    30237 
    30238 > select add #2.76
    30239 
    30240 5 models selected 
    30241 
    30242 > select add #2.68
    30243 
    30244 6 models selected 
    30245 
    30246 > select add #2.38
    30247 
    30248 7 models selected 
    30249 
    30250 > select add #2.39
    30251 
    30252 8 models selected 
    30253 
    30254 > select add #2.3
    30255 
    30256 9 models selected 
    30257 
    30258 > select add #2.59
    30259 
    30260 10 models selected 
    30261 
    30262 > select add #2.4
    30263 
    30264 11 models selected 
    30265 
    30266 > select add #2.5
    30267 
    30268 12 models selected 
    30269 
    30270 > select add #2.69
    30271 
    30272 13 models selected 
    30273 
    30274 > select add #2.120
    30275 
    30276 14 models selected 
    30277 
    30278 > select add #2.42
    30279 
    30280 15 models selected 
    30281 Grouped 15 regions 
    30282 
    30283 > select add #2.21
    30284 
    30285 2 models selected 
    30286 
    30287 > select add #2.107
    30288 
    30289 3 models selected 
    30290 
    30291 > select add #2.66
    30292 
    30293 4 models selected 
    30294 
    30295 > select add #2.15
    30296 
    30297 5 models selected 
    30298 
    30299 > select add #2.89
    30300 
    30301 6 models selected 
    30302 
    30303 > select add #2.93
    30304 
    30305 7 models selected 
    30306 
    30307 > select add #2.71
    30308 
    30309 8 models selected 
    30310 
    30311 > select add #2.46
    30312 
    30313 9 models selected 
    30314 Grouped 9 regions 
    30315 
    30316 > select add #2.63
    30317 
    30318 2 models selected 
    30319 
    30320 > select add #2.121
    30321 
    30322 3 models selected 
    30323 
    30324 > select add #2.41
    30325 
    30326 4 models selected 
    30327 
    30328 > select subtract #2.41
    30329 
    30330 3 models selected 
    30331 
    30332 > select add #2.41
    30333 
    30334 4 models selected 
    30335 
    30336 > select add #2.104
    30337 
    30338 5 models selected 
    30339 
    30340 > select add #2.119
    30341 
    30342 6 models selected 
    30343 
    30344 > select add #2.96
    30345 
    30346 7 models selected 
    30347 
    30348 > select add #2.101
    30349 
    30350 8 models selected 
    30351 Grouped 8 regions 
    30352 
    30353 > select add #2.1
    30354 
    30355 2 models selected 
    30356 Grouped 2 regions 
    30357 
    30358 > select add #2.122
    30359 
    30360 2 models selected 
    30361 
    30362 > select add #2.125
    30363 
    30364 3 models selected 
    30365 
    30366 > select add #2.98
    30367 
    30368 4 models selected 
    30369 
    30370 > select add #2.81
    30371 
    30372 5 models selected 
    30373 
    30374 > select add #2.114
    30375 
    30376 6 models selected 
    30377 
    30378 > select add #2.72
    30379 
    30380 7 models selected 
    30381 
    30382 > select add #2.54
    30383 
    30384 8 models selected 
    30385 
    30386 > select add #2.74
    30387 
    30388 9 models selected 
    30389 
    30390 > select add #2.67
    30391 
    30392 10 models selected 
    30393 
    30394 > select add #2.123
    30395 
    30396 11 models selected 
    30397 
    30398 > select add #2.88
    30399 
    30400 12 models selected 
    30401 
    30402 > select add #2.113
    30403 
    30404 13 models selected 
    30405 
    30406 > select add #2.61
    30407 
    30408 14 models selected 
    30409 
    30410 > select add #2.100
    30411 
    30412 15 models selected 
    30413 
    30414 > select add #2.85
    30415 
    30416 16 models selected 
    30417 
    30418 > select add #2.86
    30419 
    30420 17 models selected 
    30421 
    30422 > select add #2.12
    30423 
    30424 18 models selected 
    30425 
    30426 > select add #2.99
    30427 
    30428 19 models selected 
    30429 
    30430 > select add #2.57
    30431 
    30432 20 models selected 
    30433 
    30434 > select add #2.50
    30435 
    30436 21 models selected 
    30437 
    30438 > select add #2.58
    30439 
    30440 22 models selected 
    30441 
    30442 > select add #2.106
    30443 
    30444 23 models selected 
    30445 
    30446 > select add #2.111
    30447 
    30448 24 models selected 
    30449 
    30450 > select add #2.108
    30451 
    30452 25 models selected 
    30453 
    30454 > select add #2.45
    30455 
    30456 26 models selected 
    30457 
    30458 > select add #2.112
    30459 
    30460 27 models selected 
    30461 
    30462 > select add #2.60
    30463 
    30464 28 models selected 
    30465 
    30466 > select add #2.10
    30467 
    30468 29 models selected 
    30469 
    30470 > select subtract #2.10
    30471 
    30472 28 models selected 
    30473 Grouped 28 regions 
    30474 
    30475 > select #2.1
    30476 
    30477 1 model selected 
    30478 
    30479 > hide #!27 models
    30480 
    30481 > select clear
    30482 
    30483 > select #2.2
    30484 
    30485 1 model selected 
    30486 
    30487 > select add #2.23
    30488 
    30489 2 models selected 
    30490 
    30491 > select add #2.34
    30492 
    30493 3 models selected 
    30494 
    30495 > select add #2.35
    30496 
    30497 4 models selected 
    30498 
    30499 > select add #2.40
    30500 
    30501 5 models selected 
    30502 
    30503 > select add #2.36
    30504 
    30505 6 models selected 
    30506 
    30507 > select add #2.22
    30508 
    30509 7 models selected 
    30510 
    30511 > select add #2.43
    30512 
    30513 8 models selected 
    30514 
    30515 > select add #2.37
    30516 
    30517 9 models selected 
    30518 
    30519 > select add #2.27
    30520 
    30521 10 models selected 
    30522 
    30523 > select add #2.65
    30524 
    30525 11 models selected 
    30526 
    30527 > select add #2.79
    30528 
    30529 12 models selected 
    30530 
    30531 > select add #2.52
    30532 
    30533 13 models selected 
    30534 
    30535 > select add #2.29
    30536 
    30537 14 models selected 
    30538 
    30539 > select add #2.18
    30540 
    30541 15 models selected 
    30542 
    30543 > select add #2.33
    30544 
    30545 16 models selected 
    30546 
    30547 > select add #2.53
    30548 
    30549 17 models selected 
    30550 
    30551 > select add #2.64
    30552 
    30553 18 models selected 
    30554 
    30555 > select add #2.92
    30556 
    30557 19 models selected 
    30558 
    30559 > select add #2.32
    30560 
    30561 20 models selected 
    30562 
    30563 > select add #2.95
    30564 
    30565 21 models selected 
    30566 
    30567 > select add #2.19
    30568 
    30569 22 models selected 
    30570 
    30571 > select add #2.94
    30572 
    30573 23 models selected 
    30574 
    30575 > select add #2.17
    30576 
    30577 24 models selected 
    30578 
    30579 > select add #2.117
    30580 
    30581 25 models selected 
    30582 
    30583 > select add #2.87
    30584 
    30585 26 models selected 
    30586 
    30587 > select add #2.30
    30588 
    30589 27 models selected 
    30590 
    30591 > select add #2.73
    30592 
    30593 28 models selected 
    30594 
    30595 > select add #2.14
    30596 
    30597 29 models selected 
    30598 
    30599 > select add #2.48
    30600 
    30601 30 models selected 
    30602 
    30603 > select add #2.9
    30604 
    30605 31 models selected 
    30606 
    30607 > select add #2.109
    30608 
    30609 32 models selected 
    30610 
    30611 > select add #2.56
    30612 
    30613 33 models selected 
    30614 
    30615 > select add #2.78
    30616 
    30617 34 models selected 
    30618 
    30619 > select add #2.11
    30620 
    30621 35 models selected 
    30622 
    30623 > select add #2.31
    30624 
    30625 36 models selected 
    30626 
    30627 > select add #2.10
    30628 
    30629 37 models selected 
    30630 
    30631 > select add #2.47
    30632 
    30633 38 models selected 
    30634 
    30635 > select add #2.97
    30636 
    30637 39 models selected 
    30638 
    30639 > select add #2.7
    30640 
    30641 40 models selected 
    30642 
    30643 > select add #2.126
    30644 
    30645 41 models selected 
    30646 
    30647 > select add #2.6
    30648 
    30649 42 models selected 
    30650 
    30651 > select add #2.84
    30652 
    30653 43 models selected 
    30654 
    30655 > select add #2.83
    30656 
    30657 44 models selected 
    30658 
    30659 > select add #2.24
    30660 
    30661 45 models selected 
    30662 
    30663 > select add #2.49
    30664 
    30665 46 models selected 
    30666 
    30667 > select add #2.55
    30668 
    30669 47 models selected 
    30670 Grouped 47 regions 
    30671 
    30672 > select #2.1
    30673 
    30674 1 model selected 
    30675 
    30676 > select add #2.8
    30677 
    30678 2 models selected 
    30679 
    30680 > select add #2.70
    30681 
    30682 3 models selected 
    30683 
    30684 > select add #2.77
    30685 
    30686 4 models selected 
    30687 
    30688 > select add #2.91
    30689 
    30690 5 models selected 
    30691 
    30692 > select add #2.103
    30693 
    30694 6 models selected 
    30695 
    30696 > select add #2.80
    30697 
    30698 7 models selected 
    30699 
    30700 > select add #2.105
    30701 
    30702 8 models selected 
    30703 
    30704 > select add #2.102
    30705 
    30706 9 models selected 
    30707 
    30708 > select add #2.28
    30709 
    30710 10 models selected 
    30711 Grouped 10 regions 
    30712 
    30713 > select add #2.116
    30714 
    30715 2 models selected 
    30716 
    30717 > select add #2.129
    30718 
    30719 3 models selected 
    30720 
    30721 > select add #2.75
    30722 
    30723 4 models selected 
    30724 
    30725 > select add #2.90
    30726 
    30727 5 models selected 
    30728 Grouped 5 regions 
    30729 
    30730 > select add #2.118
    30731 
    30732 2 models selected 
    30733 
    30734 > select add #2.141
    30735 
    30736 3 models selected 
    30737 Grouped 3 regions 
    30738 
    30739 > select add #2.135
    30740 
    30741 2 models selected 
    30742 Grouped 2 regions 
    30743 Showing 30 region surfaces 
    30744 
    30745 > select add #2.115
    30746 
    30747 2 models selected 
    30748 Grouped 2 regions 
    30749 
    30750 > select clear
    30751 
    30752 > select #2.110
    30753 
    30754 1 model selected 
    30755 
    30756 > select add #2.132
    30757 
    30758 2 models selected 
    30759 
    30760 > select add #2.131
    30761 
    30762 3 models selected 
    30763 
    30764 > select add #2.1
    30765 
    30766 4 models selected 
    30767 Grouped 4 regions 
    30768 Grouped 1 regions 
    30769 
    30770 > select #2.44
    30771 
    30772 1 model selected 
    30773 Ungrouped to 2 regions 
    30774 Ungrouped to 11 regions 
    30775 
    30776 > select #2.7
    30777 
    30778 1 model selected 
    30779 
    30780 > select add #2.16
    30781 
    30782 2 models selected 
    30783 Drag select of 3729, 267 of 22140 triangles, 3088, 105 of 3812 triangles, 435,
    30784 17 of 1940 triangles, 2986, 78 of 3528 triangles, 2979, 126 of 4372 triangles 
    30785 
    30786 > select subtract #2.13
    30787 
    30788 4 models selected 
    30789 Grouped 4 regions 
    30790 
    30791 > select add #2.12
    30792 
    30793 2 models selected 
    30794 Grouped 2 regions 
    30795 
    30796 > select add #2.10
    30797 
    30798 2 models selected 
    30799 
    30800 > select add #2.5
    30801 
    30802 3 models selected 
    30803 Grouped 3 regions 
    30804 
    30805 > select add #2.1
    30806 
    30807 2 models selected 
    30808 Grouped 2 regions 
    30809 
    30810 > select clear
    30811 
    30812 > select #2.1
    30813 
    30814 1 model selected 
    30815 Opened Rev-CJFlgYPlfAB-
    30816 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30817 as #28, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30818 
    30819 The cached device pixel ratio value was stale on window expose. Please file a
    30820 QTBUG which explains how to reproduce. 
    30821 
    30822 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/IM.mrc
    30823 > models #28
    30824 
    30825 Opened Rev-CJFlgYPlfAB-
    30826 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    30827 as #29, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    30828 Segmenting Rev-CJFlgYPlfAB-
    30829 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    30830 density threshold 0.001238 
    30831 Showing 71 region surfaces 
    30832 1231 watershed regions, grouped to 71 regions 
    30833 Showing Rev-CJFlgYPlfAB-
    30834 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    30835 - 71 regions, 71 surfaces 
    30836 
    30837 > hide #!28 models
    30838 
    30839 > hide #!29 models
    30840 
    30841 > select #2.9
    30842 
    30843 1 model selected 
    30844 
    30845 > select #2.30
    30846 
    30847 1 model selected 
    30848 
    30849 > select add #2.35
    30850 
    30851 2 models selected 
    30852 Grouped 2 regions 
    30853 
    30854 > select #2.9
    30855 
    30856 1 model selected 
    30857 Ungrouped to 2 regions 
    30858 Ungrouped to 6 regions 
    30859 Ungrouped to 14 regions 
    30860 
    30861 > select #2.79
    30862 
    30863 1 model selected 
    30864 Ungrouped to 5 regions 
    30865 Ungrouped to 0 regions 
    30866 
    30867 > select #2.80
    30868 
    30869 1 model selected 
    30870 
    30871 > select add #2.30
    30872 
    30873 2 models selected 
    30874 
    30875 > select add #2.77
    30876 
    30877 3 models selected 
    30878 
    30879 > select add #2.78
    30880 
    30881 4 models selected 
    30882 
    30883 > select add #2.8
    30884 
    30885 5 models selected 
    30886 Grouped 5 regions 
    30887 
    30888 > select #2.38
    30889 
    30890 1 model selected 
    30891 Ungrouped to 3 regions 
    30892 Ungrouped to 4 regions 
    30893 Ungrouped to 8 regions 
    30894 Ungrouped to 0 regions 
    30895 
    30896 > select #2.8
    30897 
    30898 1 model selected 
    30899 
    30900 > select add #2.30
    30901 
    30902 2 models selected 
    30903 
    30904 > select add #2.97
    30905 
    30906 3 models selected 
    30907 
    30908 > select #2.44
    30909 
    30910 1 model selected 
    30911 
    30912 > select add #2.4
    30913 
    30914 2 models selected 
    30915 
    30916 > select add #2.6
    30917 
    30918 3 models selected 
    30919 
    30920 > select #2.6
    30921 
    30922 1 model selected 
    30923 
    30924 > select #2.6
    30925 
    30926 1 model selected 
    30927 Ungrouped to 4 regions 
    30928 Ungrouped to 9 regions 
    30929 
    30930 > select #2.102
    30931 
    30932 1 model selected 
    30933 Ungrouped to 6 regions 
    30934 
    30935 > select #2.107
    30936 
    30937 1 model selected 
    30938 Ungrouped to 4 regions 
    30939 Ungrouped to 0 regions 
    30940 Ungrouped to 43 regions 
    30941 
    30942 > select #2.3
    30943 
    30944 1 model selected 
    30945 Ungrouped to 6 regions 
    30946 Ungrouped to 19 regions 
    30947 [Repeated 1 time(s)]Ungrouped to 0 regions 
    30948 
    30949 > select #2.173
    30950 
    30951 1 model selected 
    30952 
    30953 > select add #2.29
    30954 
    30955 2 models selected 
    30956 
    30957 > select #2.8
    30958 
    30959 1 model selected 
    30960 
    30961 > select add #2.30
    30962 
    30963 2 models selected 
    30964 
    30965 > select add #2.97
    30966 
    30967 3 models selected 
    30968 
    30969 > select subtract #2.92
    30970 
    30971 162 models selected 
    30972 
    30973 > select subtract #2.78
    30974 
    30975 161 models selected 
    30976 
    30977 > select #2.8
    30978 
    30979 1 model selected 
    30980 Ungrouped to 5 regions 
    30981 Ungrouped to 14 regions 
    30982 
    30983 > select #2.178
    30984 
    30985 1 model selected 
    30986 Ungrouped to 6 regions 
    30987 
    30988 > select #2.18
    30989 
    30990 1 model selected 
    30991 
    30992 > select add #2.49
    30993 
    30994 2 models selected 
    30995 Ungrouped to 8 regions 
    30996 
    30997 > select #2.187
    30998 
    30999 1 model selected 
    31000 
    31001 > select add #2.192
    31002 
    31003 2 models selected 
    31004 
    31005 > select add #2.50
    31006 
    31007 3 models selected 
    31008 
    31009 > select #2.50
    31010 
    31011 1 model selected 
    31012 
    31013 > select clear
    31014 
    31015 > select #2.50
    31016 
    31017 1 model selected 
    31018 Ungrouped to 7 regions 
    31019 
    31020 > select subtract #2.49
    31021 
    31022 6 models selected 
    31023 
    31024 > select subtract #2.195
    31025 
    31026 5 models selected 
    31027 
    31028 > select clear
    31029 
    31030 > select #2.49
    31031 
    31032 1 model selected 
    31033 
    31034 > select add #2.195
    31035 
    31036 2 models selected 
    31037 
    31038 > select add #2.175
    31039 
    31040 3 models selected 
    31041 
    31042 > select #2.175
    31043 
    31044 1 model selected 
    31045 Ungrouped to 2 regions 
    31046 
    31047 > select clear
    31048 
    31049 > select #2.199
    31050 
    31051 1 model selected 
    31052 
    31053 > select #2.155
    31054 
    31055 1 model selected 
    31056 
    31057 > select #2.156
    31058 
    31059 1 model selected 
    31060 Ungrouped to 9 regions 
    31061 
    31062 > select #2.205
    31063 
    31064 1 model selected 
    31065 
    31066 > select add #2.206
    31067 
    31068 2 models selected 
    31069 
    31070 > select add #2.200
    31071 
    31072 3 models selected 
    31073 
    31074 > select add #2.207
    31075 
    31076 4 models selected 
    31077 
    31078 > select add #2.198
    31079 
    31080 5 models selected 
    31081 
    31082 > select add #2.18
    31083 
    31084 6 models selected 
    31085 
    31086 > select add #2.190
    31087 
    31088 7 models selected 
    31089 
    31090 > select add #2.203
    31091 
    31092 8 models selected 
    31093 
    31094 > select add #2.175
    31095 
    31096 9 models selected 
    31097 
    31098 > select add #2.191
    31099 
    31100 10 models selected 
    31101 
    31102 > select clear
    31103 
    31104 > select #2.191
    31105 
    31106 1 model selected 
    31107 
    31108 > select #2.193
    31109 
    31110 1 model selected 
    31111 
    31112 > select #2.194
    31113 
    31114 1 model selected 
    31115 Ungrouped to 0 regions 
    31116 
    31117 > select #2.194
    31118 
    31119 1 model selected 
    31120 Ungrouped to 0 regions 
    31121 
    31122 > select #2.186
    31123 
    31124 1 model selected 
    31125 
    31126 > select #2.8
    31127 
    31128 1 model selected 
    31129 Ungrouped to 10 regions 
    31130 
    31131 > select #2.215
    31132 
    31133 1 model selected 
    31134 
    31135 > select #2.185
    31136 
    31137 1 model selected 
    31138 Ungrouped to 3 regions 
    31139 
    31140 > select #2.8
    31141 
    31142 1 model selected 
    31143 
    31144 > select #2.201
    31145 
    31146 1 model selected 
    31147 Ungrouped to 4 regions 
    31148 
    31149 > select #2.185
    31150 
    31151 1 model selected 
    31152 
    31153 > select add #2.221
    31154 
    31155 2 models selected 
    31156 
    31157 > select clear
    31158 
    31159 > select #2.209
    31160 
    31161 1 model selected 
    31162 
    31163 > select add #2.213
    31164 
    31165 2 models selected 
    31166 
    31167 > select #2.220
    31168 
    31169 1 model selected 
    31170 Ungrouped to 0 regions 
    31171 
    31172 > select #2.97
    31173 
    31174 1 model selected 
    31175 Ungrouped to 0 regions 
    31176 Drag select of 207, 276, 355, 226, 231, 1499, 227, 315, 91, 121, 120, 109,
    31177 209, 1481, 151, 150, 246, 100, 1277, 1420, 90, 425, 504, 282, 358, 230, 4550
    31178 of 4628 triangles, 193, 178, 277, 3758 of 3760 triangles, 1409, 131, 225, 390,
    31179 340 
    31180 Grouped 34 regions 
    31181 Showing 187 region surfaces 
    31182 
    31183 > select clear
    31184 
    31185 > select #2.13
    31186 
    31187 1 model selected 
    31188 Opened Rev-CJFlgYPlfAB-
    31189 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    31190 as #30, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    31191 
    31192 The cached device pixel ratio value was stale on window expose. Please file a
    31193 QTBUG which explains how to reproduce. 
    31194 
    31195 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/1xFliL.mrc
    31196 > models #30
    31197 
    31198 > hide #!30 models
    31199 
    31200 > select #2.95
    31201 
    31202 1 model selected 
    31203 
    31204 > select add #2.13
    31205 
    31206 2 models selected 
    31207 Grouped 2 regions 
    31208 Opened Rev-CJFlgYPlfAB-
    31209 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    31210 as #31, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    31211 
    31212 The cached device pixel ratio value was stale on window expose. Please file a
    31213 QTBUG which explains how to reproduce. 
    31214 
    31215 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/1xFliL.mrc
    31216 > models #31
    31217 
    31218 > select clear
    31219 
    31220 > select #2.150
    31221 
    31222 1 model selected 
    31223 
    31224 > select add #2.149
    31225 
    31226 2 models selected 
    31227 
    31228 > select add #2.79
    31229 
    31230 3 models selected 
    31231 
    31232 > select add #2.80
    31233 
    31234 4 models selected 
    31235 
    31236 > select add #2.108
    31237 
    31238 5 models selected 
    31239 
    31240 > select add #2.179
    31241 
    31242 6 models selected 
    31243 
    31244 > select add #2.44
    31245 
    31246 7 models selected 
    31247 
    31248 > select add #2.123
    31249 
    31250 8 models selected 
    31251 
    31252 > select add #2.5
    31253 
    31254 9 models selected 
    31255 
    31256 > select add #2.4
    31257 
    31258 10 models selected 
    31259 
    31260 > select add #2.99
    31261 
    31262 11 models selected 
    31263 
    31264 > select add #2.29
    31265 
    31266 12 models selected 
    31267 
    31268 > select add #2.2
    31269 
    31270 13 models selected 
    31271 
    31272 > select subtract #2.4
    31273 
    31274 12 models selected 
    31275 
    31276 > select add #2.173
    31277 
    31278 13 models selected 
    31279 
    31280 > select add #2.174
    31281 
    31282 14 models selected 
    31283 Drag select of 1595, 27 of 6488 triangles, 170, 24 of 2304 triangles, 255, 31
    31284 of 1496 triangles 
    31285 
    31286 > select #2.5
    31287 
    31288 1 model selected 
    31289 
    31290 > select add #2.4
    31291 
    31292 2 models selected 
    31293 
    31294 > select add #2.173
    31295 
    31296 3 models selected 
    31297 
    31298 > select add #2.2
    31299 
    31300 4 models selected 
    31301 
    31302 > select add #2.174
    31303 
    31304 5 models selected 
    31305 
    31306 > select add #2.29
    31307 
    31308 6 models selected 
    31309 
    31310 > select add #2.99
    31311 
    31312 7 models selected 
    31313 
    31314 > select subtract #2.99
    31315 
    31316 6 models selected 
    31317 
    31318 > select add #2.99
    31319 
    31320 7 models selected 
    31321 
    31322 > select add #2.149
    31323 
    31324 8 models selected 
    31325 
    31326 > select add #2.150
    31327 
    31328 9 models selected 
    31329 
    31330 > select add #2.79
    31331 
    31332 10 models selected 
    31333 
    31334 > select add #2.108
    31335 
    31336 11 models selected 
    31337 
    31338 > select add #2.80
    31339 
    31340 12 models selected 
    31341 
    31342 > select add #2.179
    31343 
    31344 13 models selected 
    31345 
    31346 > select add #2.44
    31347 
    31348 14 models selected 
    31349 
    31350 > select add #2.25
    31351 
    31352 15 models selected 
    31353 
    31354 > select add #2.169
    31355 
    31356 16 models selected 
    31357 
    31358 > select add #2.170
    31359 
    31360 17 models selected 
    31361 
    31362 > select add #2.22
    31363 
    31364 18 models selected 
    31365 
    31366 > select add #2.167
    31367 
    31368 19 models selected 
    31369 
    31370 > select add #2.168
    31371 
    31372 20 models selected 
    31373 
    31374 > select add #2.13
    31375 
    31376 21 models selected 
    31377 
    31378 > hide #!31 models
    31379 
    31380 > select clear
    31381 
    31382 > select #2.44
    31383 
    31384 1 model selected 
    31385 Ungrouped to 6 regions 
    31386 
    31387 > select #2.30
    31388 
    31389 1 model selected 
    31390 
    31391 > select add #2.50
    31392 
    31393 2 models selected 
    31394 
    31395 > select add #2.53
    31396 
    31397 3 models selected 
    31398 
    31399 > select clear
    31400 
    31401 > select #2.78
    31402 
    31403 1 model selected 
    31404 Ungrouped to 0 regions 
    31405 
    31406 > select #2.19
    31407 
    31408 1 model selected 
    31409 Ungrouped to 2 regions 
    31410 Ungrouped to 0 regions 
    31411 
    31412 > select #2.150
    31413 
    31414 1 model selected 
    31415 Ungrouped to 5 regions 
    31416 Ungrouped to 24 regions 
    31417 Ungrouped to 23 regions 
    31418 
    31419 > select #2.226
    31420 
    31421 1 model selected 
    31422 
    31423 > select add #2.228
    31424 
    31425 2 models selected 
    31426 
    31427 > select add #2.211
    31428 
    31429 3 models selected 
    31430 
    31431 > select add #2.237
    31432 
    31433 4 models selected 
    31434 
    31435 > select add #2.236
    31436 
    31437 5 models selected 
    31438 
    31439 > select add #2.214
    31440 
    31441 6 models selected 
    31442 
    31443 > select add #2.235
    31444 
    31445 7 models selected 
    31446 
    31447 > select add #2.156
    31448 
    31449 8 models selected 
    31450 
    31451 > select add #2.179
    31452 
    31453 9 models selected 
    31454 
    31455 > select subtract #2.179
    31456 
    31457 8 models selected 
    31458 
    31459 > select add #2.19
    31460 
    31461 9 models selected 
    31462 
    31463 > select add #2.197
    31464 
    31465 10 models selected 
    31466 
    31467 > select #2.179
    31468 
    31469 1 model selected 
    31470 Ungrouped to 6 regions 
    31471 
    31472 > select #2.182
    31473 
    31474 1 model selected 
    31475 
    31476 > select add #2.183
    31477 
    31478 2 models selected 
    31479 
    31480 > select add #2.97
    31481 
    31482 3 models selected 
    31483 
    31484 > select add #2.216
    31485 
    31486 4 models selected 
    31487 
    31488 > select add #2.212
    31489 
    31490 5 models selected 
    31491 
    31492 > select #2.108
    31493 
    31494 1 model selected 
    31495 Ungrouped to 0 regions 
    31496 
    31497 > select #2.108
    31498 
    31499 1 model selected 
    31500 
    31501 > select #2.201
    31502 
    31503 1 model selected 
    31504 
    31505 > select #2.202
    31506 
    31507 1 model selected 
    31508 Ungrouped to 8 regions 
    31509 
    31510 > select #2.244
    31511 
    31512 1 model selected 
    31513 
    31514 > select subtract #2.244
    31515 
    31516 Nothing selected 
    31517 
    31518 > select add #2.244
    31519 
    31520 1 model selected 
    31521 
    31522 > select add #2.149
    31523 
    31524 2 models selected 
    31525 
    31526 > select subtract #2.149
    31527 
    31528 1 model selected 
    31529 
    31530 > select add #2.149
    31531 
    31532 2 models selected 
    31533 
    31534 > select #2.181
    31535 
    31536 1 model selected 
    31537 Ungrouped to 0 regions 
    31538 
    31539 > select add #2.218
    31540 
    31541 1 model selected 
    31542 
    31543 > select add #2.78
    31544 
    31545 2 models selected 
    31546 
    31547 > select #2.99
    31548 
    31549 1 model selected 
    31550 Ungrouped to 8 regions 
    31551 
    31552 > select #2.248
    31553 
    31554 1 model selected 
    31555 
    31556 > select add #2.246
    31557 
    31558 2 models selected 
    31559 
    31560 > select add #2.251
    31561 
    31562 3 models selected 
    31563 
    31564 > select add #2.245
    31565 
    31566 4 models selected 
    31567 
    31568 > select add #2.202
    31569 
    31570 5 models selected 
    31571 
    31572 > select clear
    31573 
    31574 > select #2.247
    31575 
    31576 1 model selected 
    31577 
    31578 > select #2.202
    31579 
    31580 1 model selected 
    31581 Ungrouped to 3 regions 
    31582 Ungrouped to 0 regions 
    31583 
    31584 > select #2.29
    31585 
    31586 1 model selected 
    31587 Ungrouped to 4 regions 
    31588 Ungrouped to 23 regions 
    31589 
    31590 > select clear
    31591 
    31592 > select #2.277
    31593 
    31594 1 model selected 
    31595 
    31596 > select add #2.274
    31597 
    31598 2 models selected 
    31599 
    31600 > select add #2.278
    31601 
    31602 3 models selected 
    31603 
    31604 > select add #2.275
    31605 
    31606 4 models selected 
    31607 
    31608 > select add #2.276
    31609 
    31610 5 models selected 
    31611 
    31612 > select add #2.262
    31613 
    31614 6 models selected 
    31615 
    31616 > select #2.169
    31617 
    31618 1 model selected 
    31619 
    31620 > select add #2.170
    31621 
    31622 2 models selected 
    31623 
    31624 > select add #2.5
    31625 
    31626 3 models selected 
    31627 
    31628 > select #2.5
    31629 
    31630 1 model selected 
    31631 Ungrouped to 4 regions 
    31632 
    31633 > select #2.255
    31634 
    31635 1 model selected 
    31636 Ungrouped to 10 regions 
    31637 
    31638 > select #2.286
    31639 
    31640 1 model selected 
    31641 
    31642 > select add #2.283
    31643 
    31644 2 models selected 
    31645 
    31646 > select add #2.273
    31647 
    31648 3 models selected 
    31649 
    31650 > select add #2.272
    31651 
    31652 4 models selected 
    31653 
    31654 > select add #2.266
    31655 
    31656 5 models selected 
    31657 
    31658 > select add #2.29
    31659 
    31660 6 models selected 
    31661 
    31662 > select add #2.202
    31663 
    31664 7 models selected 
    31665 
    31666 > select add #2.257
    31667 
    31668 8 models selected 
    31669 
    31670 > select add #2.268
    31671 
    31672 9 models selected 
    31673 
    31674 > select add #2.265
    31675 
    31676 10 models selected 
    31677 
    31678 > select add #2.256
    31679 
    31680 11 models selected 
    31681 
    31682 > select #2.271
    31683 
    31684 1 model selected 
    31685 Ungrouped to 2 regions 
    31686 
    31687 > select clear
    31688 
    31689 > select #2.289
    31690 
    31691 1 model selected 
    31692 
    31693 > select #2.181
    31694 
    31695 1 model selected 
    31696 
    31697 > select clear
    31698 
    31699 > select #2.217
    31700 
    31701 1 model selected 
    31702 
    31703 > select add #2.168
    31704 
    31705 2 models selected 
    31706 
    31707 > select add #2.167
    31708 
    31709 3 models selected 
    31710 
    31711 > select #2.13
    31712 
    31713 1 model selected 
    31714 Drag select of 132, 303 of 4172 triangles, 288, 389 of 1296 triangles, 233, 5
    31715 of 3452 triangles, 329, 108 of 2248 triangles, 1599, 181 of 7828 triangles,
    31716 104, 2566 of 4364 triangles, 1246, 27 of 2812 triangles, 187, 1002 of 2892
    31717 triangles, 185, 1426, 4810 of 6384 triangles, 1433, 4864 of 11184 triangles,
    31718 308, 874 of 2308 triangles, 293, 278 of 2080 triangles 
    31719 
    31720 > select clear
    31721 
    31722 Drag select of 113, 1257, 201, 256, 170, 127, 141, 240, 1710, 180, 300, 210,
    31723 462, 317, 124, 304, 112, 132, 288, 195, 233, 252, 329, 135, 213, 287, 264,
    31724 263, 363, 302, 343, 92, 182, 289, 267, 285, 316, 362, 328, 1581, 168, 122,
    31725 211, 212, 1419, 270, 1406, 290, 346, 347, 126, 138, 136, 157, 137, 1284, 184,
    31726 199, 183, 139, 1599, 104, 1246, 187, 185, 1426, 1433, 308, 293, 217 
    31727 Grouped 70 regions 
    31728 Showing 219 region surfaces 
    31729 Opened Rev-CJFlgYPlfAB-
    31730 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    31731 as #32, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    31732 
    31733 The cached device pixel ratio value was stale on window expose. Please file a
    31734 QTBUG which explains how to reproduce. 
    31735 
    31736 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/3xFliL.mrc
    31737 > models #32
    31738 
    31739 > select clear
    31740 
    31741 > select #2.27
    31742 
    31743 1 model selected 
    31744 
    31745 > select add #2.141
    31746 
    31747 2 models selected 
    31748 
    31749 > select add #2.142
    31750 
    31751 3 models selected 
    31752 
    31753 > select add #2.114
    31754 
    31755 4 models selected 
    31756 
    31757 > select add #2.112
    31758 
    31759 5 models selected 
    31760 
    31761 > select add #2.104
    31762 
    31763 6 models selected 
    31764 
    31765 > select add #2.98
    31766 
    31767 7 models selected 
    31768 
    31769 > select add #2.6
    31770 
    31771 8 models selected 
    31772 
    31773 > select add #2.39
    31774 
    31775 9 models selected 
    31776 
    31777 > select add #2.246
    31778 
    31779 10 models selected 
    31780 
    31781 > select add #2.248
    31782 
    31783 11 models selected 
    31784 
    31785 > select add #2.20
    31786 
    31787 12 models selected 
    31788 
    31789 > select add #2.247
    31790 
    31791 13 models selected 
    31792 
    31793 > select add #2.245
    31794 
    31795 14 models selected 
    31796 
    31797 > select add #2.251
    31798 
    31799 15 models selected 
    31800 
    31801 > select add #2.105
    31802 
    31803 16 models selected 
    31804 
    31805 > select add #2.103
    31806 
    31807 17 models selected 
    31808 
    31809 > select add #2.91
    31810 
    31811 18 models selected 
    31812 
    31813 > select add #2.106
    31814 
    31815 19 models selected 
    31816 
    31817 > select add #2.109
    31818 
    31819 20 models selected 
    31820 
    31821 > select add #2.102
    31822 
    31823 21 models selected 
    31824 
    31825 > select add #2.108
    31826 
    31827 22 models selected 
    31828 Grouped 22 regions 
    31829 
    31830 > select #2.2
    31831 
    31832 1 model selected 
    31833 
    31834 > select #2.110
    31835 
    31836 1 model selected 
    31837 
    31838 > select add #2.2
    31839 
    31840 2 models selected 
    31841 Grouped 2 regions 
    31842 Showing 197 region surfaces 
    31843 
    31844 > select #2.4
    31845 
    31846 1 model selected 
    31847 
    31848 > select #2.28
    31849 
    31850 1 model selected 
    31851 
    31852 > select add #2.125
    31853 
    31854 2 models selected 
    31855 
    31856 > select add #2.126
    31857 
    31858 3 models selected 
    31859 
    31860 > select add #2.17
    31861 
    31862 4 models selected 
    31863 
    31864 > select add #2.144
    31865 
    31866 5 models selected 
    31867 
    31868 > select add #2.50
    31869 
    31870 6 models selected 
    31871 
    31872 > select add #2.86
    31873 
    31874 7 models selected 
    31875 
    31876 > select add #2.85
    31877 
    31878 8 models selected 
    31879 
    31880 > select add #2.75
    31881 
    31882 9 models selected 
    31883 
    31884 > select add #2.88
    31885 
    31886 10 models selected 
    31887 
    31888 > select add #2.46
    31889 
    31890 11 models selected 
    31891 
    31892 > select add #2.89
    31893 
    31894 12 models selected 
    31895 
    31896 > select add #2.83
    31897 
    31898 13 models selected 
    31899 
    31900 > select add #2.81
    31901 
    31902 14 models selected 
    31903 
    31904 > select add #2.82
    31905 
    31906 15 models selected 
    31907 
    31908 > select add #2.90
    31909 
    31910 16 models selected 
    31911 
    31912 > select add #2.72
    31913 
    31914 17 models selected 
    31915 
    31916 > select add #2.87
    31917 
    31918 18 models selected 
    31919 
    31920 > select add #2.51
    31921 
    31922 19 models selected 
    31923 
    31924 > select add #2.35
    31925 
    31926 20 models selected 
    31927 
    31928 > select add #2.30
    31929 
    31930 21 models selected 
    31931 
    31932 > select add #2.78
    31933 
    31934 22 models selected 
    31935 
    31936 > select add #2.53
    31937 
    31938 23 models selected 
    31939 Grouped 23 regions 
    31940 
    31941 > select add #2.4
    31942 
    31943 2 models selected 
    31944 Grouped 2 regions 
    31945 
    31946 > select #2.123
    31947 
    31948 1 model selected 
    31949 
    31950 > select add #2.120
    31951 
    31952 2 models selected 
    31953 
    31954 > select clear
    31955 
    31956 Showing 174 region surfaces 
    31957 
    31958 > select #2.120
    31959 
    31960 1 model selected 
    31961 
    31962 > select add #2.4
    31963 
    31964 2 models selected 
    31965 
    31966 > select add #2.122
    31967 
    31968 3 models selected 
    31969 
    31970 > select add #2.37
    31971 
    31972 4 models selected 
    31973 
    31974 > select add #2.40
    31975 
    31976 5 models selected 
    31977 
    31978 > select add #2.128
    31979 
    31980 6 models selected 
    31981 
    31982 > select add #2.127
    31983 
    31984 7 models selected 
    31985 
    31986 > select add #2.133
    31987 
    31988 8 models selected 
    31989 
    31990 > select add #2.96
    31991 
    31992 9 models selected 
    31993 
    31994 > select add #2.47
    31995 
    31996 10 models selected 
    31997 
    31998 > select add #2.130
    31999 
    32000 11 models selected 
    32001 
    32002 > select add #2.36
    32003 
    32004 12 models selected 
    32005 Grouped 12 regions 
    32006 
    32007 > hide #!32 models
    32008 
    32009 > select clear
    32010 
    32011 > select #2.4
    32012 
    32013 1 model selected 
    32014 
    32015 > select add #2.228
    32016 
    32017 2 models selected 
    32018 
    32019 > select add #2.139
    32020 
    32021 3 models selected 
    32022 Grouped 3 regions 
    32023 
    32024 > select clear
    32025 
    32026 > select #2.4
    32027 
    32028 1 model selected 
    32029 Opened Rev-CJFlgYPlfAB-
    32030 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    32031 as #33, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    32032 
    32033 The cached device pixel ratio value was stale on window expose. Please file a
    32034 QTBUG which explains how to reproduce. 
    32035 
    32036 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/3xPflAB.mrc
    32037 > models #33
    32038 
    32039 > select clear
    32040 
    32041 > select #2.4
    32042 
    32043 1 model selected 
    32044 
    32045 > hide #!33 models
    32046 
    32047 > select #2.93
    32048 
    32049 1 model selected 
    32050 
    32051 > select add #2.77
    32052 
    32053 2 models selected 
    32054 
    32055 > select add #2.2
    32056 
    32057 3 models selected 
    32058 
    32059 > select add #2.76
    32060 
    32061 4 models selected 
    32062 
    32063 > select add #2.74
    32064 
    32065 5 models selected 
    32066 
    32067 > select add #2.84
    32068 
    32069 6 models selected 
    32070 
    32071 > select add #2.221
    32072 
    32073 7 models selected 
    32074 
    32075 > select add #2.123
    32076 
    32077 8 models selected 
    32078 
    32079 > select add #2.201
    32080 
    32081 9 models selected 
    32082 Grouped 9 regions 
    32083 
    32084 > select clear
    32085 
    32086 > select #2.163
    32087 
    32088 1 model selected 
    32089 
    32090 > select add #2.169
    32091 
    32092 2 models selected 
    32093 
    32094 > select add #2.165
    32095 
    32096 3 models selected 
    32097 
    32098 > select add #2.166
    32099 
    32100 4 models selected 
    32101 
    32102 > select add #2.160
    32103 
    32104 5 models selected 
    32105 
    32106 > select add #2.26
    32107 
    32108 6 models selected 
    32109 
    32110 > select add #2.170
    32111 
    32112 7 models selected 
    32113 
    32114 > select add #2.32
    32115 
    32116 8 models selected 
    32117 
    32118 > select add #2.159
    32119 
    32120 9 models selected 
    32121 
    32122 > select add #2.33
    32123 
    32124 10 models selected 
    32125 
    32126 > select clear
    32127 
    32128 Showing 153 region surfaces 
    32129 
    32130 > select #2.2
    32131 
    32132 1 model selected 
    32133 Opened Rev-CJFlgYPlfAB-
    32134 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    32135 as #34, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    32136 
    32137 The cached device pixel ratio value was stale on window expose. Please file a
    32138 QTBUG which explains how to reproduce. 
    32139 
    32140 > save /Users/shoichitachiyama/Desktop/For-Chimera-PflAB/Resegment/3xFliL.mrc
    32141 > models #34
    32142 
    32143 > select clear
    32144 
    32145 > select #2.2
    32146 
    32147 1 model selected 
    32148 
    32149 > select add #2.4
    32150 
    32151 2 models selected 
    32152 
    32153 > hide #!34 models
    32154 
    32155 Opened Rev-CJFlgYPlfAB-
    32156 msk-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    32157 as #35, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    32158 
    32159 The cached device pixel ratio value was stale on window expose. Please file a
    32160 QTBUG which explains how to reproduce. 
    32161 
    32162 > save /Users/shoichitachiyama/Desktop/For-Chimera-
    32163 > PflAB/Resegment/Segmentations.cxs includeMaps true
    32164 
    32165 > close session
    32166 
    32167 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    32168 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    32169 > refinment/For-Chimera-PflAB/Resegment/3xPflAB.mrc"
    32170 
    32171 Opened 3xPflAB.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    32172 0.0208, step 1, values float32 
    32173 
    32174 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    32175 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    32176 > refinment/For-Chimera-PflAB/Resegment/3xFliL.mrc"
    32177 
    32178 Opened 3xFliL.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    32179 0.00115, step 1, values float32 
    32180 
    32181 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    32182 > files/C.jejuni/2nd_paper/For-2nd-manuscript/CJ_PflAB-cage_Sep2024/Model-
    32183 > from-Jack/PflAB-Cage.pdb"
    32184 
    32185 Chain information for PflAB-Cage.pdb 
    32186 --- 
    32187 Chain | Description 
    32188 3.1/A 3.2/A 3.3/A 3.4/A | No description available 
    32189 3.5/A 3.8/D 3.11/G 3.14/J 3.17/M 3.20/P 3.23/S 3.26/V | No description available 
    32190 3.1/B 3.2/B 3.3/B 3.4/B | No description available 
    32191 3.6/B 3.9/E 3.12/H 3.15/K 3.18/N 3.21/Q 3.24/T 3.27/W | No description available 
    32192 3.7/C 3.10/F 3.13/I 3.16/L 3.19/O 3.22/R 3.25/U 3.28/X | No description available 
    32193 3.29/Y 3.30/Z 3.31/a 3.32/b 3.33/c | No description available 
    32194  
    32195 
    32196 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    32197 > files/C.jejuni/2nd_paper/For-2nd-manuscript/CJ_PflAB-cage_Sep2024/Model-
    32198 > from-Jack/Multimer-CJ-unit.pdb"
    32199 
    32200 Chain information for Multimer-CJ-unit.pdb 
    32201 --- 
    32202 Chain | Description 
    32203 4.27/? 4.50/? 4.73/? 4.96/? | No description available 
    32204 4.38/? 4.39/? 4.40/? 4.41/? 4.42/? 4.43/? 4.44/? 4.45/? 4.46/? 4.47/? 4.61/? 4.62/? 4.63/? 4.64/? 4.65/? 4.66/? 4.67/? 4.68/? 4.69/? 4.70/? 4.84/? 4.85/? 4.86/? 4.87/? 4.88/? 4.89/? 4.90/? 4.91/? 4.92/? 4.93/? 4.107/? 4.108/? 4.109/? 4.110/? 4.111/? 4.112/? 4.113/? 4.114/? 4.115/? 4.116/? | No description available 
    32205 4.1/A 4.2/A 4.3/A 4.4/A 4.5/A 4.6/A 4.7/A 4.8/A | No description available 
    32206 4.9/A 4.10/A 4.11/A 4.12/A 4.13/A | No description available 
    32207 4.14/A 4.15/A 4.16/A 4.17/A 4.18/A | No description available 
    32208 4.25/A 4.26/A 4.48/A 4.49/A 4.71/A 4.72/A 4.94/A 4.95/A | No description available 
    32209 4.117/A 4.118/A 4.119/A 4.120/A 4.121/A 4.122/A 4.117/B 4.118/B 4.119/B 4.120/B 4.121/B 4.122/B | No description available 
    32210 4.1/B 4.2/B 4.3/B 4.4/B 4.5/B 4.6/B 4.7/B 4.8/B | No description available 
    32211 4.14/B 4.15/B 4.16/B 4.17/B 4.18/B | No description available 
    32212 4.28/B 4.29/B 4.30/B 4.31/B 4.32/B 4.33/B 4.34/B 4.35/B 4.36/B 4.37/B 4.51/B 4.52/B 4.53/B 4.54/B 4.55/B 4.56/B 4.57/B 4.58/B 4.59/B 4.60/B 4.74/B 4.75/B 4.76/B 4.77/B 4.78/B 4.79/B 4.80/B 4.81/B 4.82/B 4.83/B 4.97/B 4.98/B 4.99/B 4.100/B 4.101/B 4.102/B 4.103/B 4.104/B 4.105/B 4.106/B | No description available 
    32213 4.1/C 4.2/C 4.3/C 4.4/C 4.5/C 4.6/C 4.7/C 4.8/C | No description available 
    32214 4.19/C 4.20/C 4.21/C 4.22/C 4.23/C 4.24/C | No description available 
    32215  
    32216 
    32217 > select add #4
    32218 
    32219 224507 atoms, 227843 bonds, 42 pseudobonds, 26692 residues, 141 models
    32220 selected 
    32221 
    32222 > ui mousemode right "translate selected models"
    32223 
    32224 > view matrix models #4,1,0,0,-66.228,0,1,0,-349.31,0,0,1,23.812
    32225 
    32226 > close #3
    32227 
    32228 > view matrix models #4,1,0,0,-405.38,0,1,0,-311.45,0,0,1,58.256
    32229 
    32230 > view matrix models #4,1,0,0,-254.62,0,1,0,-339.9,0,0,1,-50.92
    32231 
    32232 > view matrix models #4,1,0,0,-426.07,0,1,0,-256.92,0,0,1,-34.021
    32233 
    32234 > view matrix models #4,1,0,0,-530.23,0,1,0,-265.12,0,0,1,-194.49
    32235 
    32236 > view matrix models #4,1,0,0,-513.93,0,1,0,-314.27,0,0,1,-191.45
    32237 
    32238 > view matrix models #4,1,0,0,-513.75,0,1,0,-313.02,0,0,1,-191.47
    32239 
    32240 > combine #4
    32241 
    32242 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.2 to 'D' 
    32243 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.2 to 'E' 
    32244 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.2 to 'F' 
    32245 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.3 to 'G' 
    32246 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.3 to 'H' 
    32247 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.3 to 'I' 
    32248 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.4 to 'J' 
    32249 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.4 to 'K' 
    32250 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.4 to 'L' 
    32251 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.5 to 'M' 
    32252 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.5 to 'N' 
    32253 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.5 to 'O' 
    32254 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.6 to 'P' 
    32255 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.6 to 'Q' 
    32256 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.6 to 'R' 
    32257 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.7 to 'S' 
    32258 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.7 to 'T' 
    32259 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.7 to 'U' 
    32260 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.8 to 'V' 
    32261 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.8 to 'W' 
    32262 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.8 to 'X' 
    32263 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.9 to 'Y' 
    32264 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.10 to 'Z' 
    32265 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.11 to 'a' 
    32266 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.12 to 'b' 
    32267 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.13 to 'c' 
    32268 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.14 to 'd' 
    32269 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.14 to 'e' 
    32270 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.15 to 'f' 
    32271 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.15 to 'g' 
    32272 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.16 to 'h' 
    32273 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.16 to 'i' 
    32274 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.17 to 'j' 
    32275 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.17 to 'k' 
    32276 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.18 to 'l' 
    32277 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.18 to 'm' 
    32278 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.19 to 'n' 
    32279 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.20 to 'o' 
    32280 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.21 to 'p' 
    32281 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.22 to 'q' 
    32282 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.23 to 'r' 
    32283 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.24 to 's' 
    32284 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.25 to 't' 
    32285 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.26 to 'u' 
    32286 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.27 to 'v' 
    32287 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.28 to 'w' 
    32288 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.29 to 'x' 
    32289 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.30 to 'y' 
    32290 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.31 to 'z' 
    32291 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.32 to '1' 
    32292 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.33 to '2' 
    32293 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.34 to '3' 
    32294 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.35 to '4' 
    32295 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.36 to '5' 
    32296 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.37 to '6' 
    32297 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.38 to '7' 
    32298 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.39 to '8' 
    32299 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.40 to '9' 
    32300 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.41 to '0' 
    32301 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.42 to 'AA' 
    32302 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.43 to 'AB' 
    32303 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.44 to 'AC' 
    32304 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.45 to 'AD' 
    32305 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.46 to 'AE' 
    32306 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.47 to 'AF' 
    32307 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.48 to 'AG' 
    32308 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.49 to 'AH' 
    32309 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.50 to 'AI' 
    32310 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.51 to 'AJ' 
    32311 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.52 to 'AK' 
    32312 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.53 to 'AL' 
    32313 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.54 to 'AM' 
    32314 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.55 to 'AN' 
    32315 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.56 to 'AO' 
    32316 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.57 to 'AP' 
    32317 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.58 to 'AQ' 
    32318 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.59 to 'AR' 
    32319 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.60 to 'AS' 
    32320 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.61 to 'AT' 
    32321 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.62 to 'AU' 
    32322 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.63 to 'AV' 
    32323 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.64 to 'AW' 
    32324 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.65 to 'AX' 
    32325 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.66 to 'AY' 
    32326 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.67 to 'AZ' 
    32327 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.68 to 'Aa' 
    32328 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.69 to 'Ab' 
    32329 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.70 to 'Ac' 
    32330 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.71 to 'Ad' 
    32331 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.72 to 'Ae' 
    32332 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.73 to 'Af' 
    32333 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.74 to 'Ag' 
    32334 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.75 to 'Ah' 
    32335 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.76 to 'Ai' 
    32336 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.77 to 'Aj' 
    32337 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.78 to 'Ak' 
    32338 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.79 to 'Al' 
    32339 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.80 to 'Am' 
    32340 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.81 to 'An' 
    32341 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.82 to 'Ao' 
    32342 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.83 to 'Ap' 
    32343 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.84 to 'Aq' 
    32344 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.85 to 'Ar' 
    32345 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.86 to 'As' 
    32346 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.87 to 'At' 
    32347 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.88 to 'Au' 
    32348 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.89 to 'Av' 
    32349 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.90 to 'Aw' 
    32350 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.91 to 'Ax' 
    32351 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.92 to 'Ay' 
    32352 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.93 to 'Az' 
    32353 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.94 to 'A1' 
    32354 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.95 to 'A2' 
    32355 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.96 to 'A3' 
    32356 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.97 to 'A4' 
    32357 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.98 to 'A5' 
    32358 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.99 to 'A6' 
    32359 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.100 to 'A7' 
    32360 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.101 to 'A8' 
    32361 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.102 to 'A9' 
    32362 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.103 to 'A0' 
    32363 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.104 to 'BA' 
    32364 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.105 to 'BB' 
    32365 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.106 to 'BC' 
    32366 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.107 to 'BD' 
    32367 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.108 to 'BE' 
    32368 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.109 to 'BF' 
    32369 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.110 to 'BG' 
    32370 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.111 to 'BH' 
    32371 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.112 to 'BI' 
    32372 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.113 to 'BJ' 
    32373 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.114 to 'BK' 
    32374 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.115 to 'BL' 
    32375 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.116 to 'BM' 
    32376 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.117 to 'BN' 
    32377 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.117 to 'BO' 
    32378 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.118 to 'BP' 
    32379 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.118 to 'BQ' 
    32380 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.119 to 'BR' 
    32381 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.119 to 'BS' 
    32382 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.120 to 'BT' 
    32383 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.120 to 'BU' 
    32384 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.121 to 'BV' 
    32385 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.121 to 'BW' 
    32386 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.122 to 'BX' 
    32387 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.122 to 'BY' 
    32388 
    32389 > select subtract #4
    32390 
    32391 Nothing selected 
    32392 
    32393 > select add #3
    32394 
    32395 224507 atoms, 227843 bonds, 42 pseudobonds, 26692 residues, 2 models selected 
    32396 
    32397 > hide #!4 models
    32398 
    32399 > view matrix models #3,1,0,0,-503.4,0,1,0,-322.53,0,0,1,-242.38
    32400 
    32401 > view matrix models #3,1,0,0,-508.08,0,1,0,-316.17,0,0,1,-241.55
    32402 
    32403 > ui mousemode right "rotate selected models"
    32404 
    32405 > view matrix models
    32406 > #3,0.99384,-0.10889,-0.020595,-437.23,0.10906,0.99401,0.0069264,-397.45,0.019718,-0.0091298,0.99976,-251.37
    32407 
    32408 > ui mousemode right "translate selected models"
    32409 
    32410 > view matrix models
    32411 > #3,0.99384,-0.10889,-0.020595,-497.59,0.10906,0.99401,0.0069264,-443.27,0.019718,-0.0091298,0.99976,-253.96
    32412 
    32413 > color #2 #ffffb289 models
    32414 
    32415 > color #2 #ffffb26c models
    32416 
    32417 Cell requested for row 2 is out of bounds for table with 5 rows! Resizing
    32418 table model. 
    32419 
    32420 > color #3 #4e6ceeff
    32421 
    32422 > ui tool show "Fit in Map"
    32423 
    32424 The cached device pixel ratio value was stale on window expose. Please file a
    32425 QTBUG which explains how to reproduce. 
    32426 
    32427 [Repeated 1 time(s)]
    32428 
    32429 > fitmap #3 inMap #2
    32430 
    32431 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    32432 average map value = 0.001642, steps = 204 
    32433 shifted from previous position = 24.5 
    32434 rotated from previous position = 15 degrees 
    32435 atoms outside contour = 207179, contour level = 0.0011513 
    32436  
    32437 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    32438 Matrix rotation and translation 
    32439 0.98858703 0.14365941 0.04536134 -672.25005535 
    32440 -0.14419119 0.98951195 0.00866005 -244.68410126 
    32441 -0.04364149 -0.01510192 0.99893311 -219.69361290 
    32442 Axis -0.07862165 0.29448528 -0.95241643 
    32443 Axis point -2403.97482385 4384.48479255 0.00000000 
    32444 Rotation angle (degrees) 8.69160231 
    32445 Shift along axis 190.03734942 
    32446  
    32447 
    32448 > fitmap #3 inMap #2
    32449 
    32450 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    32451 average map value = 0.001642, steps = 28 
    32452 shifted from previous position = 0.049 
    32453 rotated from previous position = 0.00519 degrees 
    32454 atoms outside contour = 207185, contour level = 0.0011513 
    32455  
    32456 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    32457 Matrix rotation and translation 
    32458 0.98858397 0.14368297 0.04535359 -672.22491614 
    32459 -0.14421080 0.98950986 0.00857197 -244.58744867 
    32460 -0.04364618 -0.01501458 0.99893422 -219.74771178 
    32461 Axis -0.07803440 0.29444933 -0.95247584 
    32462 Axis point -2402.40026643 4384.60173062 0.00000000 
    32463 Rotation angle (degrees) 8.69236933 
    32464 Shift along axis 189.74244580 
    32465  
    32466 
    32467 > color #1 #b2b2b286 models
    32468 
    32469 > color #1 #b2b2b280 models
    32470 
    32471 > fitmap #3 inMap #2
    32472 
    32473 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    32474 average map value = 0.001642, steps = 28 
    32475 shifted from previous position = 0.049 
    32476 rotated from previous position = 0.00961 degrees 
    32477 atoms outside contour = 207177, contour level = 0.0011513 
    32478  
    32479 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    32480 Matrix rotation and translation 
    32481 0.98859095 0.14362700 0.04537860 -672.24238357 
    32482 -0.14416208 0.98951558 0.00873027 -244.74546523 
    32483 -0.04364893 -0.01517254 0.99893171 -219.64726321 
    32484 Axis -0.07909821 0.29460620 -0.95233957 
    32485 Axis point -2405.37688551 4384.62827327 0.00000000 
    32486 Rotation angle (degrees) 8.69043685 
    32487 Shift along axis 190.24841566 
    32488  
    32489 
    32490 > fitmap #3 inMap #2
    32491 
    32492 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    32493 average map value = 0.001642, steps = 40 
    32494 shifted from previous position = 0.0317 
    32495 rotated from previous position = 0.00727 degrees 
    32496 atoms outside contour = 207178, contour level = 0.0011513 
    32497  
    32498 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    32499 Matrix rotation and translation 
    32500 0.98858534 0.14367343 0.04535395 -672.23245438 
    32501 -0.14420305 0.98951063 0.00861303 -244.62683977 
    32502 -0.04364075 -0.01505490 0.99893385 -219.72580475 
    32503 Axis -0.07830664 0.29444384 -0.95245519 
    32504 Axis point -2403.06464622 4384.47520465 0.00000000 
    32505 Rotation angle (degrees) 8.69203333 
    32506 Shift along axis 189.89038322 
    32507  
    32508 
    32509 > fitmap #3 inMap #2
    32510 
    32511 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    32512 average map value = 0.001642, steps = 28 
    32513 shifted from previous position = 0.0314 
    32514 rotated from previous position = 0.00482 degrees 
    32515 atoms outside contour = 207177, contour level = 0.0011513 
    32516  
    32517 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    32518 Matrix rotation and translation 
    32519 0.98858892 0.14364411 0.04536878 -672.24593804 
    32520 -0.14417737 0.98951369 0.00869172 -244.71227686 
    32521 -0.04364452 -0.01513369 0.99893249 -219.67301583 
    32522 Axis -0.07883669 0.29453907 -0.95238202 
    32523 Axis point -2404.62006849 4384.56658655 0.00000000 
    32524 Rotation angle (degrees) 8.69103238 
    32525 Shift along axis 190.13294908 
    32526  
    32527 
    32528 > fitmap #3 inMap #2
    32529 
    32530 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    32531 average map value = 0.001642, steps = 40 
    32532 shifted from previous position = 0.0229 
    32533 rotated from previous position = 0.00351 degrees 
    32534 atoms outside contour = 207180, contour level = 0.0011513 
    32535  
    32536 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    32537 Matrix rotation and translation 
    32538 0.98858671 0.14366431 0.04535290 -672.23289860 
    32539 -0.14419488 0.98951163 0.00863530 -244.65177137 
    32540 -0.04363663 -0.01507640 0.99893370 -219.71539500 
    32541 Axis -0.07845525 0.29444093 -0.95244386 
    32542 Axis point -2403.50683165 4384.50379888 0.00000000 
    32543 Rotation angle (degrees) 8.69161151 
    32544 Shift along axis 189.97128347 
    32545  
    32546 
    32547 > view orient
    32548 
    32549 > ui mousemode right "rotate selected models"
    32550 
    32551 > view matrix models
    32552 > #3,0.99226,0.11567,0.045091,-660.47,-0.11622,0.99317,0.0099124,-267.91,-0.043637,-0.015076,0.99893,-219.72
    32553 
    32554 > ui mousemode right "translate selected models"
    32555 
    32556 > view matrix models
    32557 > #3,0.99226,0.11567,0.045091,-660.22,-0.11622,0.99317,0.0099124,-267.44,-0.043637,-0.015076,0.99893,-219.72
    32558 
    32559 > fitmap #3 inMap #2
    32560 
    32561 Fit molecule combination (#3) to map 3xFliL.mrc (#2) using 224507 atoms 
    32562 average map value = 0.001642, steps = 60 
    32563 shifted from previous position = 2.26 
    32564 rotated from previous position = 1.62 degrees 
    32565 atoms outside contour = 207179, contour level = 0.0011513 
    32566  
    32567 Position of combination (#3) relative to 3xFliL.mrc (#2) coordinates: 
    32568 Matrix rotation and translation 
    32569 0.98858235 0.14369538 0.04534951 -672.24494734 
    32570 -0.14422453 0.98950759 0.00860317 -244.60240474 
    32571 -0.04363745 -0.01504545 0.99893414 -219.73488330 
    32572 Axis -0.07823302 0.29438163 -0.95248047 
    32573 Axis point -2402.48860800 4383.99198374 0.00000000 
    32574 Rotation angle (degrees) 8.69312209 
    32575 Shift along axis 189.87847858 
    32576  
    32577 
    32578 > ui mousemode right "rotate selected models"
    32579 
    32580 > view matrix models
    32581 > #3,0.99165,0.12076,0.045138,-662.66,-0.12131,0.99257,0.0096501,-263.68,-0.043637,-0.015045,0.99893,-219.73
    32582 
    32583 > ui mousemode right "translate selected models"
    32584 
    32585 > view matrix models
    32586 > #3,0.99165,0.12076,0.045138,-663.1,-0.12131,0.99257,0.0096501,-262.22,-0.043637,-0.015045,0.99893,-219.73
    32587 
    32588 > view matrix models
    32589 > #3,0.99165,0.12076,0.045138,-662.4,-0.12131,0.99257,0.0096501,-261.77,-0.043637,-0.015045,0.99893,-219.73
    32590 
    32591 Cell requested for row 2 is out of bounds for table with 126 rows! Resizing
    32592 table model. 
    32593 
    32594 > save /Users/shoichitachiyama/Desktop/For-Chimera-
    32595 > PflAB/Resegment/Docking_Jack_model.cxs includeMaps true
    32596 
    32597 > combine #4
    32598 
    32599 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.2 to 'D' 
    32600 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.2 to 'E' 
    32601 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.2 to 'F' 
    32602 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.3 to 'G' 
    32603 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.3 to 'H' 
    32604 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.3 to 'I' 
    32605 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.4 to 'J' 
    32606 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.4 to 'K' 
    32607 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.4 to 'L' 
    32608 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.5 to 'M' 
    32609 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.5 to 'N' 
    32610 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.5 to 'O' 
    32611 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.6 to 'P' 
    32612 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.6 to 'Q' 
    32613 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.6 to 'R' 
    32614 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.7 to 'S' 
    32615 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.7 to 'T' 
    32616 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.7 to 'U' 
    32617 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.8 to 'V' 
    32618 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.8 to 'W' 
    32619 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.8 to 'X' 
    32620 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.9 to 'Y' 
    32621 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.10 to 'Z' 
    32622 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.11 to 'a' 
    32623 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.12 to 'b' 
    32624 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.13 to 'c' 
    32625 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.14 to 'd' 
    32626 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.14 to 'e' 
    32627 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.15 to 'f' 
    32628 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.15 to 'g' 
    32629 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.16 to 'h' 
    32630 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.16 to 'i' 
    32631 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.17 to 'j' 
    32632 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.17 to 'k' 
    32633 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.18 to 'l' 
    32634 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.18 to 'm' 
    32635 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.19 to 'n' 
    32636 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.20 to 'o' 
    32637 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.21 to 'p' 
    32638 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.22 to 'q' 
    32639 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.23 to 'r' 
    32640 Remapping chain ID 'C' in Multimer-CJ-unit.pdb #4.24 to 's' 
    32641 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.25 to 't' 
    32642 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.26 to 'u' 
    32643 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.27 to 'v' 
    32644 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.28 to 'w' 
    32645 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.29 to 'x' 
    32646 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.30 to 'y' 
    32647 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.31 to 'z' 
    32648 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.32 to '1' 
    32649 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.33 to '2' 
    32650 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.34 to '3' 
    32651 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.35 to '4' 
    32652 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.36 to '5' 
    32653 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.37 to '6' 
    32654 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.38 to '7' 
    32655 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.39 to '8' 
    32656 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.40 to '9' 
    32657 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.41 to '0' 
    32658 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.42 to 'AA' 
    32659 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.43 to 'AB' 
    32660 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.44 to 'AC' 
    32661 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.45 to 'AD' 
    32662 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.46 to 'AE' 
    32663 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.47 to 'AF' 
    32664 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.48 to 'AG' 
    32665 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.49 to 'AH' 
    32666 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.50 to 'AI' 
    32667 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.51 to 'AJ' 
    32668 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.52 to 'AK' 
    32669 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.53 to 'AL' 
    32670 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.54 to 'AM' 
    32671 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.55 to 'AN' 
    32672 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.56 to 'AO' 
    32673 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.57 to 'AP' 
    32674 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.58 to 'AQ' 
    32675 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.59 to 'AR' 
    32676 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.60 to 'AS' 
    32677 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.61 to 'AT' 
    32678 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.62 to 'AU' 
    32679 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.63 to 'AV' 
    32680 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.64 to 'AW' 
    32681 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.65 to 'AX' 
    32682 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.66 to 'AY' 
    32683 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.67 to 'AZ' 
    32684 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.68 to 'Aa' 
    32685 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.69 to 'Ab' 
    32686 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.70 to 'Ac' 
    32687 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.71 to 'Ad' 
    32688 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.72 to 'Ae' 
    32689 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.73 to 'Af' 
    32690 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.74 to 'Ag' 
    32691 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.75 to 'Ah' 
    32692 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.76 to 'Ai' 
    32693 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.77 to 'Aj' 
    32694 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.78 to 'Ak' 
    32695 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.79 to 'Al' 
    32696 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.80 to 'Am' 
    32697 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.81 to 'An' 
    32698 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.82 to 'Ao' 
    32699 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.83 to 'Ap' 
    32700 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.84 to 'Aq' 
    32701 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.85 to 'Ar' 
    32702 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.86 to 'As' 
    32703 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.87 to 'At' 
    32704 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.88 to 'Au' 
    32705 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.89 to 'Av' 
    32706 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.90 to 'Aw' 
    32707 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.91 to 'Ax' 
    32708 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.92 to 'Ay' 
    32709 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.93 to 'Az' 
    32710 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.94 to 'A1' 
    32711 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.95 to 'A2' 
    32712 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.96 to 'A3' 
    32713 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.97 to 'A4' 
    32714 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.98 to 'A5' 
    32715 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.99 to 'A6' 
    32716 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.100 to 'A7' 
    32717 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.101 to 'A8' 
    32718 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.102 to 'A9' 
    32719 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.103 to 'A0' 
    32720 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.104 to 'BA' 
    32721 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.105 to 'BB' 
    32722 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.106 to 'BC' 
    32723 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.107 to 'BD' 
    32724 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.108 to 'BE' 
    32725 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.109 to 'BF' 
    32726 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.110 to 'BG' 
    32727 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.111 to 'BH' 
    32728 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.112 to 'BI' 
    32729 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.113 to 'BJ' 
    32730 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.114 to 'BK' 
    32731 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.115 to 'BL' 
    32732 Remapping chain ID ' ' in Multimer-CJ-unit.pdb #4.116 to 'BM' 
    32733 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.117 to 'BN' 
    32734 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.117 to 'BO' 
    32735 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.118 to 'BP' 
    32736 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.118 to 'BQ' 
    32737 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.119 to 'BR' 
    32738 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.119 to 'BS' 
    32739 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.120 to 'BT' 
    32740 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.120 to 'BU' 
    32741 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.121 to 'BV' 
    32742 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.121 to 'BW' 
    32743 Remapping chain ID 'A' in Multimer-CJ-unit.pdb #4.122 to 'BX' 
    32744 Remapping chain ID 'B' in Multimer-CJ-unit.pdb #4.122 to 'BY' 
    32745 
    32746 > matchmaker #5 to #3
    32747 
    32748 Parameters 
    32749 --- 
    32750 Chain pairing | bb 
    32751 Alignment algorithm | Needleman-Wunsch 
    32752 Similarity matrix | BLOSUM-62 
    32753 SS fraction | 0.3 
    32754 Gap open (HH/SS/other) | 18/18/6 
    32755 Gap extend | 1 
    32756 SS matrix |  |  | H | S | O 
    32757 ---|---|---|--- 
    32758 H | 6 | -9 | -6 
    32759 S |  | 6 | -6 
    32760 O |  |  | 4 
    32761 Iteration cutoff | 2 
    32762  
    32763 Matchmaker combination, chain v (#3) with combination, chain v (#5), sequence
    32764 alignment score = 6376.6 
    32765 RMSD between 1250 pruned atom pairs is 0.000 angstroms; (across all 1250
    32766 pairs: 0.000) 
    32767  
    32768 
    32769 > select subtract #3
    32770 
    32771 Nothing selected 
    32772 
    32773 > hide #!3 models
    32774 
    32775 > splits #5
    32776 
    32777 Unknown command: splits #5 
    32778 
    32779 > split #5
    32780 
    32781 Split combination (#5) into 149 models 
    32782 Chain information for combination 0 #5.1 
    32783 --- 
    32784 Chain | Description 
    32785 0 | No description available 
    32786  
    32787 Chain information for combination 1 #5.2 
    32788 --- 
    32789 Chain | Description 
    32790 1 | No description available 
    32791  
    32792 Chain information for combination 2 #5.3 
    32793 --- 
    32794 Chain | Description 
    32795 2 | No description available 
    32796  
    32797 Chain information for combination 3 #5.4 
    32798 --- 
    32799 Chain | Description 
    32800 3 | No description available 
    32801  
    32802 Chain information for combination 4 #5.5 
    32803 --- 
    32804 Chain | Description 
    32805 4 | No description available 
    32806  
    32807 Chain information for combination 5 #5.6 
    32808 --- 
    32809 Chain | Description 
    32810 5 | No description available 
    32811  
    32812 Chain information for combination 6 #5.7 
    32813 --- 
    32814 Chain | Description 
    32815 6 | No description available 
    32816  
    32817 Chain information for combination 7 #5.8 
    32818 --- 
    32819 Chain | Description 
    32820 7 | No description available 
    32821  
    32822 Chain information for combination 8 #5.9 
    32823 --- 
    32824 Chain | Description 
    32825 8 | No description available 
    32826  
    32827 Chain information for combination 9 #5.10 
    32828 --- 
    32829 Chain | Description 
    32830 9 | No description available 
    32831  
    32832 Chain information for combination A #5.11 
    32833 --- 
    32834 Chain | Description 
    32835 A | No description available 
    32836  
    32837 Chain information for combination A0 #5.12 
    32838 --- 
    32839 Chain | Description 
    32840 A0 | No description available 
    32841  
    32842 Chain information for combination A1 #5.13 
    32843 --- 
    32844 Chain | Description 
    32845 A1 | No description available 
    32846  
    32847 Chain information for combination A2 #5.14 
    32848 --- 
    32849 Chain | Description 
    32850 A2 | No description available 
    32851  
    32852 Chain information for combination A3 #5.15 
    32853 --- 
    32854 Chain | Description 
    32855 A3 | No description available 
    32856  
    32857 Chain information for combination A4 #5.16 
    32858 --- 
    32859 Chain | Description 
    32860 A4 | No description available 
    32861  
    32862 Chain information for combination A5 #5.17 
    32863 --- 
    32864 Chain | Description 
    32865 A5 | No description available 
    32866  
    32867 Chain information for combination A6 #5.18 
    32868 --- 
    32869 Chain | Description 
    32870 A6 | No description available 
    32871  
    32872 Chain information for combination A7 #5.19 
    32873 --- 
    32874 Chain | Description 
    32875 A7 | No description available 
    32876  
    32877 Chain information for combination A8 #5.20 
    32878 --- 
    32879 Chain | Description 
    32880 A8 | No description available 
    32881  
    32882 Chain information for combination A9 #5.21 
    32883 --- 
    32884 Chain | Description 
    32885 A9 | No description available 
    32886  
    32887 Chain information for combination AA #5.22 
    32888 --- 
    32889 Chain | Description 
    32890 AA | No description available 
    32891  
    32892 Chain information for combination AB #5.23 
    32893 --- 
    32894 Chain | Description 
    32895 AB | No description available 
    32896  
    32897 Chain information for combination AC #5.24 
    32898 --- 
    32899 Chain | Description 
    32900 AC | No description available 
    32901  
    32902 Chain information for combination AD #5.25 
    32903 --- 
    32904 Chain | Description 
    32905 AD | No description available 
    32906  
    32907 Chain information for combination AE #5.26 
    32908 --- 
    32909 Chain | Description 
    32910 AE | No description available 
    32911  
    32912 Chain information for combination AF #5.27 
    32913 --- 
    32914 Chain | Description 
    32915 AF | No description available 
    32916  
    32917 Chain information for combination AG #5.28 
    32918 --- 
    32919 Chain | Description 
    32920 AG | No description available 
    32921  
    32922 Chain information for combination AH #5.29 
    32923 --- 
    32924 Chain | Description 
    32925 AH | No description available 
    32926  
    32927 Chain information for combination AI #5.30 
    32928 --- 
    32929 Chain | Description 
    32930 AI | No description available 
    32931  
    32932 Chain information for combination AJ #5.31 
    32933 --- 
    32934 Chain | Description 
    32935 AJ | No description available 
    32936  
    32937 Chain information for combination AK #5.32 
    32938 --- 
    32939 Chain | Description 
    32940 AK | No description available 
    32941  
    32942 Chain information for combination AL #5.33 
    32943 --- 
    32944 Chain | Description 
    32945 AL | No description available 
    32946  
    32947 Chain information for combination AM #5.34 
    32948 --- 
    32949 Chain | Description 
    32950 AM | No description available 
    32951  
    32952 Chain information for combination AN #5.35 
    32953 --- 
    32954 Chain | Description 
    32955 AN | No description available 
    32956  
    32957 Chain information for combination AO #5.36 
    32958 --- 
    32959 Chain | Description 
    32960 AO | No description available 
    32961  
    32962 Chain information for combination AP #5.37 
    32963 --- 
    32964 Chain | Description 
    32965 AP | No description available 
    32966  
    32967 Chain information for combination AQ #5.38 
    32968 --- 
    32969 Chain | Description 
    32970 AQ | No description available 
    32971  
    32972 Chain information for combination AR #5.39 
    32973 --- 
    32974 Chain | Description 
    32975 AR | No description available 
    32976  
    32977 Chain information for combination AS #5.40 
    32978 --- 
    32979 Chain | Description 
    32980 AS | No description available 
    32981  
    32982 Chain information for combination AT #5.41 
    32983 --- 
    32984 Chain | Description 
    32985 AT | No description available 
    32986  
    32987 Chain information for combination AU #5.42 
    32988 --- 
    32989 Chain | Description 
    32990 AU | No description available 
    32991  
    32992 Chain information for combination AV #5.43 
    32993 --- 
    32994 Chain | Description 
    32995 AV | No description available 
    32996  
    32997 Chain information for combination AW #5.44 
    32998 --- 
    32999 Chain | Description 
    33000 AW | No description available 
    33001  
    33002 Chain information for combination AX #5.45 
    33003 --- 
    33004 Chain | Description 
    33005 AX | No description available 
    33006  
    33007 Chain information for combination AY #5.46 
    33008 --- 
    33009 Chain | Description 
    33010 AY | No description available 
    33011  
    33012 Chain information for combination AZ #5.47 
    33013 --- 
    33014 Chain | Description 
    33015 AZ | No description available 
    33016  
    33017 Chain information for combination Aa #5.48 
    33018 --- 
    33019 Chain | Description 
    33020 Aa | No description available 
    33021  
    33022 Chain information for combination Ab #5.49 
    33023 --- 
    33024 Chain | Description 
    33025 Ab | No description available 
    33026  
    33027 Chain information for combination Ac #5.50 
    33028 --- 
    33029 Chain | Description 
    33030 Ac | No description available 
    33031  
    33032 Chain information for combination Ad #5.51 
    33033 --- 
    33034 Chain | Description 
    33035 Ad | No description available 
    33036  
    33037 Chain information for combination Ae #5.52 
    33038 --- 
    33039 Chain | Description 
    33040 Ae | No description available 
    33041  
    33042 Chain information for combination Af #5.53 
    33043 --- 
    33044 Chain | Description 
    33045 Af | No description available 
    33046  
    33047 Chain information for combination Ag #5.54 
    33048 --- 
    33049 Chain | Description 
    33050 Ag | No description available 
    33051  
    33052 Chain information for combination Ah #5.55 
    33053 --- 
    33054 Chain | Description 
    33055 Ah | No description available 
    33056  
    33057 Chain information for combination Ai #5.56 
    33058 --- 
    33059 Chain | Description 
    33060 Ai | No description available 
    33061  
    33062 Chain information for combination Aj #5.57 
    33063 --- 
    33064 Chain | Description 
    33065 Aj | No description available 
    33066  
    33067 Chain information for combination Ak #5.58 
    33068 --- 
    33069 Chain | Description 
    33070 Ak | No description available 
    33071  
    33072 Chain information for combination Al #5.59 
    33073 --- 
    33074 Chain | Description 
    33075 Al | No description available 
    33076  
    33077 Chain information for combination Am #5.60 
    33078 --- 
    33079 Chain | Description 
    33080 Am | No description available 
    33081  
    33082 Chain information for combination An #5.61 
    33083 --- 
    33084 Chain | Description 
    33085 An | No description available 
    33086  
    33087 Chain information for combination Ao #5.62 
    33088 --- 
    33089 Chain | Description 
    33090 Ao | No description available 
    33091  
    33092 Chain information for combination Ap #5.63 
    33093 --- 
    33094 Chain | Description 
    33095 Ap | No description available 
    33096  
    33097 Chain information for combination Aq #5.64 
    33098 --- 
    33099 Chain | Description 
    33100 Aq | No description available 
    33101  
    33102 Chain information for combination Ar #5.65 
    33103 --- 
    33104 Chain | Description 
    33105 Ar | No description available 
    33106  
    33107 Chain information for combination As #5.66 
    33108 --- 
    33109 Chain | Description 
    33110 As | No description available 
    33111  
    33112 Chain information for combination At #5.67 
    33113 --- 
    33114 Chain | Description 
    33115 At | No description available 
    33116  
    33117 Chain information for combination Au #5.68 
    33118 --- 
    33119 Chain | Description 
    33120 Au | No description available 
    33121  
    33122 Chain information for combination Av #5.69 
    33123 --- 
    33124 Chain | Description 
    33125 Av | No description available 
    33126  
    33127 Chain information for combination Aw #5.70 
    33128 --- 
    33129 Chain | Description 
    33130 Aw | No description available 
    33131  
    33132 Chain information for combination Ax #5.71 
    33133 --- 
    33134 Chain | Description 
    33135 Ax | No description available 
    33136  
    33137 Chain information for combination Ay #5.72 
    33138 --- 
    33139 Chain | Description 
    33140 Ay | No description available 
    33141  
    33142 Chain information for combination Az #5.73 
    33143 --- 
    33144 Chain | Description 
    33145 Az | No description available 
    33146  
    33147 Chain information for combination B #5.74 
    33148 --- 
    33149 Chain | Description 
    33150 B | No description available 
    33151  
    33152 Chain information for combination BA #5.75 
    33153 --- 
    33154 Chain | Description 
    33155 BA | No description available 
    33156  
    33157 Chain information for combination BB #5.76 
    33158 --- 
    33159 Chain | Description 
    33160 BB | No description available 
    33161  
    33162 Chain information for combination BC #5.77 
    33163 --- 
    33164 Chain | Description 
    33165 BC | No description available 
    33166  
    33167 Chain information for combination BD #5.78 
    33168 --- 
    33169 Chain | Description 
    33170 BD | No description available 
    33171  
    33172 Chain information for combination BE #5.79 
    33173 --- 
    33174 Chain | Description 
    33175 BE | No description available 
    33176  
    33177 Chain information for combination BF #5.80 
    33178 --- 
    33179 Chain | Description 
    33180 BF | No description available 
    33181  
    33182 Chain information for combination BG #5.81 
    33183 --- 
    33184 Chain | Description 
    33185 BG | No description available 
    33186  
    33187 Chain information for combination BH #5.82 
    33188 --- 
    33189 Chain | Description 
    33190 BH | No description available 
    33191  
    33192 Chain information for combination BI #5.83 
    33193 --- 
    33194 Chain | Description 
    33195 BI | No description available 
    33196  
    33197 Chain information for combination BJ #5.84 
    33198 --- 
    33199 Chain | Description 
    33200 BJ | No description available 
    33201  
    33202 Chain information for combination BK #5.85 
    33203 --- 
    33204 Chain | Description 
    33205 BK | No description available 
    33206  
    33207 Chain information for combination BL #5.86 
    33208 --- 
    33209 Chain | Description 
    33210 BL | No description available 
    33211  
    33212 Chain information for combination BM #5.87 
    33213 --- 
    33214 Chain | Description 
    33215 BM | No description available 
    33216  
    33217 Chain information for combination BN #5.88 
    33218 --- 
    33219 Chain | Description 
    33220 BN | No description available 
    33221  
    33222 Chain information for combination BO #5.89 
    33223 --- 
    33224 Chain | Description 
    33225 BO | No description available 
    33226  
    33227 Chain information for combination BP #5.90 
    33228 --- 
    33229 Chain | Description 
    33230 BP | No description available 
    33231  
    33232 Chain information for combination BQ #5.91 
    33233 --- 
    33234 Chain | Description 
    33235 BQ | No description available 
    33236  
    33237 Chain information for combination BR #5.92 
    33238 --- 
    33239 Chain | Description 
    33240 BR | No description available 
    33241  
    33242 Chain information for combination BS #5.93 
    33243 --- 
    33244 Chain | Description 
    33245 BS | No description available 
    33246  
    33247 Chain information for combination BT #5.94 
    33248 --- 
    33249 Chain | Description 
    33250 BT | No description available 
    33251  
    33252 Chain information for combination BU #5.95 
    33253 --- 
    33254 Chain | Description 
    33255 BU | No description available 
    33256  
    33257 Chain information for combination BV #5.96 
    33258 --- 
    33259 Chain | Description 
    33260 BV | No description available 
    33261  
    33262 Chain information for combination BW #5.97 
    33263 --- 
    33264 Chain | Description 
    33265 BW | No description available 
    33266  
    33267 Chain information for combination BX #5.98 
    33268 --- 
    33269 Chain | Description 
    33270 BX | No description available 
    33271  
    33272 Chain information for combination BY #5.99 
    33273 --- 
    33274 Chain | Description 
    33275 BY | No description available 
    33276  
    33277 Chain information for combination C #5.100 
    33278 --- 
    33279 Chain | Description 
    33280 C | No description available 
    33281  
    33282 Chain information for combination D #5.101 
    33283 --- 
    33284 Chain | Description 
    33285 D | No description available 
    33286  
    33287 Chain information for combination E #5.102 
    33288 --- 
    33289 Chain | Description 
    33290 E | No description available 
    33291  
    33292 Chain information for combination F #5.103 
    33293 --- 
    33294 Chain | Description 
    33295 F | No description available 
    33296  
    33297 Chain information for combination G #5.104 
    33298 --- 
    33299 Chain | Description 
    33300 G | No description available 
    33301  
    33302 Chain information for combination H #5.105 
    33303 --- 
    33304 Chain | Description 
    33305 H | No description available 
    33306  
    33307 Chain information for combination I #5.106 
    33308 --- 
    33309 Chain | Description 
    33310 I | No description available 
    33311  
    33312 Chain information for combination J #5.107 
    33313 --- 
    33314 Chain | Description 
    33315 J | No description available 
    33316  
    33317 Chain information for combination K #5.108 
    33318 --- 
    33319 Chain | Description 
    33320 K | No description available 
    33321  
    33322 Chain information for combination L #5.109 
    33323 --- 
    33324 Chain | Description 
    33325 L | No description available 
    33326  
    33327 Chain information for combination M #5.110 
    33328 --- 
    33329 Chain | Description 
    33330 M | No description available 
    33331  
    33332 Chain information for combination N #5.111 
    33333 --- 
    33334 Chain | Description 
    33335 N | No description available 
    33336  
    33337 Chain information for combination O #5.112 
    33338 --- 
    33339 Chain | Description 
    33340 O | No description available 
    33341  
    33342 Chain information for combination P #5.113 
    33343 --- 
    33344 Chain | Description 
    33345 P | No description available 
    33346  
    33347 Chain information for combination Q #5.114 
    33348 --- 
    33349 Chain | Description 
    33350 Q | No description available 
    33351  
    33352 Chain information for combination R #5.115 
    33353 --- 
    33354 Chain | Description 
    33355 R | No description available 
    33356  
    33357 Chain information for combination S #5.116 
    33358 --- 
    33359 Chain | Description 
    33360 S | No description available 
    33361  
    33362 Chain information for combination T #5.117 
    33363 --- 
    33364 Chain | Description 
    33365 T | No description available 
    33366  
    33367 Chain information for combination U #5.118 
    33368 --- 
    33369 Chain | Description 
    33370 U | No description available 
    33371  
    33372 Chain information for combination V #5.119 
    33373 --- 
    33374 Chain | Description 
    33375 V | No description available 
    33376  
    33377 Chain information for combination W #5.120 
    33378 --- 
    33379 Chain | Description 
    33380 W | No description available 
    33381  
    33382 Chain information for combination X #5.121 
    33383 --- 
    33384 Chain | Description 
    33385 X | No description available 
    33386  
    33387 Chain information for combination Y #5.122 
    33388 --- 
    33389 Chain | Description 
    33390 Y | No description available 
    33391  
    33392 Chain information for combination Z #5.123 
    33393 --- 
    33394 Chain | Description 
    33395 Z | No description available 
    33396  
    33397 Chain information for combination a #5.124 
    33398 --- 
    33399 Chain | Description 
    33400 a | No description available 
    33401  
    33402 Chain information for combination b #5.125 
    33403 --- 
    33404 Chain | Description 
    33405 b | No description available 
    33406  
    33407 Chain information for combination c #5.126 
    33408 --- 
    33409 Chain | Description 
    33410 c | No description available 
    33411  
    33412 Chain information for combination d #5.127 
    33413 --- 
    33414 Chain | Description 
    33415 d | No description available 
    33416  
    33417 Chain information for combination e #5.128 
    33418 --- 
    33419 Chain | Description 
    33420 e | No description available 
    33421  
    33422 Chain information for combination f #5.129 
    33423 --- 
    33424 Chain | Description 
    33425 f | No description available 
    33426  
    33427 Chain information for combination g #5.130 
    33428 --- 
    33429 Chain | Description 
    33430 g | No description available 
    33431  
    33432 Chain information for combination h #5.131 
    33433 --- 
    33434 Chain | Description 
    33435 h | No description available 
    33436  
    33437 Chain information for combination i #5.132 
    33438 --- 
    33439 Chain | Description 
    33440 i | No description available 
    33441  
    33442 Chain information for combination j #5.133 
    33443 --- 
    33444 Chain | Description 
    33445 j | No description available 
    33446  
    33447 Chain information for combination k #5.134 
    33448 --- 
    33449 Chain | Description 
    33450 k | No description available 
    33451  
    33452 Chain information for combination l #5.135 
    33453 --- 
    33454 Chain | Description 
    33455 l | No description available 
    33456  
    33457 Chain information for combination m #5.136 
    33458 --- 
    33459 Chain | Description 
    33460 m | No description available 
    33461  
    33462 Chain information for combination n #5.137 
    33463 --- 
    33464 Chain | Description 
    33465 n | No description available 
    33466  
    33467 Chain information for combination o #5.138 
    33468 --- 
    33469 Chain | Description 
    33470 o | No description available 
    33471  
    33472 Chain information for combination p #5.139 
    33473 --- 
    33474 Chain | Description 
    33475 p | No description available 
    33476  
    33477 Chain information for combination q #5.140 
    33478 --- 
    33479 Chain | Description 
    33480 q | No description available 
    33481  
    33482 Chain information for combination r #5.141 
    33483 --- 
    33484 Chain | Description 
    33485 r | No description available 
    33486  
    33487 Chain information for combination s #5.142 
    33488 --- 
    33489 Chain | Description 
    33490 s | No description available 
    33491  
    33492 Chain information for combination t #5.143 
    33493 --- 
    33494 Chain | Description 
    33495 t | No description available 
    33496  
    33497 Chain information for combination u #5.144 
    33498 --- 
    33499 Chain | Description 
    33500 u | No description available 
    33501  
    33502 Chain information for combination v #5.145 
    33503 --- 
    33504 Chain | Description 
    33505 v | No description available 
    33506  
    33507 Chain information for combination w #5.146 
    33508 --- 
    33509 Chain | Description 
    33510 w | No description available 
    33511  
    33512 Chain information for combination x #5.147 
    33513 --- 
    33514 Chain | Description 
    33515 x | No description available 
    33516  
    33517 Chain information for combination y #5.148 
    33518 --- 
    33519 Chain | Description 
    33520 y | No description available 
    33521  
    33522 Chain information for combination z #5.149 
    33523 --- 
    33524 Chain | Description 
    33525 z | No description available 
    33526  
    33527 
    33528 > surface dust #1 size 21.4
    33529 
    33530 > surface dust #2 size 21.4
    33531 
    33532 > hide #5.1 models
    33533 
    33534 > show #5.1 models
    33535 
    33536 > hide #5.1 models
    33537 
    33538 > show #5.1 models
    33539 
    33540 > select add #5.1
    33541 
    33542 186 atoms, 188 bonds, 24 residues, 1 model selected 
    33543 
    33544 > select subtract #5.1
    33545 
    33546 Nothing selected 
    33547 
    33548 > hide #5.1 models
    33549 
    33550 > hide #5.2 models
    33551 
    33552 > show #5.2 models
    33553 
    33554 > show #5.1 models
    33555 
    33556 > hide #5.1 models
    33557 
    33558 > show #5.1 models
    33559 
    33560 > hide #5.4 models
    33561 
    33562 > show #5.4 models
    33563 
    33564 > hide #5.4 models
    33565 
    33566 > show #5.4 models
    33567 
    33568 Drag select of 2201 residues 
    33569 
    33570 > hide #!5.11 models
    33571 
    33572 > hide #5.15 models
    33573 
    33574 > hide #5.30 models
    33575 
    33576 > hide #5.53 models
    33577 
    33578 > hide #!5.100 models
    33579 
    33580 > hide #!5.101 models
    33581 
    33582 > hide #5.102 models
    33583 
    33584 > hide #!5.103 models
    33585 
    33586 > hide #!5.104 models
    33587 
    33588 > hide #5.105 models
    33589 
    33590 > hide #!5.106 models
    33591 
    33592 > hide #!5.107 models
    33593 
    33594 > hide #5.108 models
    33595 
    33596 > hide #!5.109 models
    33597 
    33598 > hide #!5.110 models
    33599 
    33600 > hide #5.111 models
    33601 
    33602 > hide #!5.112 models
    33603 
    33604 > hide #!5.113 models
    33605 
    33606 > hide #5.114 models
    33607 
    33608 > hide #!5.115 models
    33609 
    33610 > hide #!5.116 models
    33611 
    33612 > hide #5.117 models
    33613 
    33614 > hide #!5.118 models
    33615 
    33616 > hide #!5.119 models
    33617 
    33618 > hide #5.120 models
    33619 
    33620 > hide #!5.121 models
    33621 
    33622 > hide #5.145 models
    33623 
    33624 > hide #5.74 models
    33625 
    33626 Drag select of 334 residues 
    33627 
    33628 > hide #5.78 models
    33629 
    33630 > hide #5.79 models
    33631 
    33632 > hide #5.80 models
    33633 
    33634 > hide #5.81 models
    33635 
    33636 > hide #5.82 models
    33637 
    33638 > hide #5.83 models
    33639 
    33640 > hide #5.84 models
    33641 
    33642 > hide #5.85 models
    33643 
    33644 > hide #5.86 models
    33645 
    33646 > hide #5.87 models
    33647 
    33648 > hide #5.73 models
    33649 
    33650 > hide #5.72 models
    33651 
    33652 > hide #5.71 models
    33653 
    33654 > hide #5.70 models
    33655 
    33656 > hide #5.69 models
    33657 
    33658 > hide #5.68 models
    33659 
    33660 > hide #5.67 models
    33661 
    33662 > hide #5.66 models
    33663 
    33664 > hide #5.65 models
    33665 
    33666 > hide #5.64 models
    33667 
    33668 > hide #5.41 models
    33669 
    33670 > hide #5.42 models
    33671 
    33672 > hide #5.43 models
    33673 
    33674 > hide #5.44 models
    33675 
    33676 > hide #5.45 models
    33677 
    33678 > hide #5.46 models
    33679 
    33680 > hide #5.47 models
    33681 
    33682 > hide #5.48 models
    33683 
    33684 > hide #5.49 models
    33685 
    33686 > hide #5.50 models
    33687 
    33688 > hide #5.22 models
    33689 
    33690 > hide #5.23 models
    33691 
    33692 > hide #5.24 models
    33693 
    33694 > hide #5.25 models
    33695 
    33696 > hide #5.26 models
    33697 
    33698 > hide #5.27 models
    33699 
    33700 > hide #5.8 models
    33701 
    33702 > hide #5.9 models
    33703 
    33704 > hide #5.10 models
    33705 
    33706 > hide #5.1 models
    33707 
    33708 Drag select of 165 residues 
    33709 
    33710 > hide #!5.122 models
    33711 
    33712 > hide #!5.123 models
    33713 
    33714 > hide #!5.124 models
    33715 
    33716 > hide #!5.125 models
    33717 
    33718 > hide #!5.126 models
    33719 
    33720 Drag select of 129 residues 
    33721 
    33722 > hide #5.90 models
    33723 
    33724 > hide #5.91 models
    33725 
    33726 Drag select of 38 residues 
    33727 
    33728 > hide #5.138 models
    33729 
    33730 Drag select of 339 residues 
    33731 
    33732 > hide #5.139 models
    33733 
    33734 > hide #5.140 models
    33735 
    33736 > hide #5.92 models
    33737 
    33738 > hide #5.93 models
    33739 
    33740 > hide #5.17 models
    33741 
    33742 Drag select of 32 residues 
    33743 
    33744 > hide #5.94 models
    33745 
    33746 > hide #5.95 models
    33747 
    33748 > select clear
    33749 
    33750 Drag select of 928 residues, 1 pseudobonds 
    33751 
    33752 > hide #5.129 models
    33753 
    33754 > hide #!5.130 models
    33755 
    33756 > hide #5.131 models
    33757 
    33758 > hide #!5.132 models
    33759 
    33760 > show #!5.132 models
    33761 
    33762 Drag select of 54 residues 
    33763 
    33764 > select clear
    33765 
    33766 Drag select of 336 residues 
    33767 
    33768 > hide #!5.132 models
    33769 
    33770 > show #!5.132 models
    33771 
    33772 > hide #5.77 models
    33773 
    33774 > hide #5.76 models
    33775 
    33776 > hide #5.20 models
    33777 
    33778 > hide #5.19 models
    33779 
    33780 > hide #5.18 models
    33781 
    33782 > hide #5.16 models
    33783 
    33784 Drag select of 26 residues 
    33785 
    33786 > hide #5.21 models
    33787 
    33788 > hide #5.12 models
    33789 
    33790 > select clear
    33791 
    33792 [Repeated 1 time(s)]Drag select of 3 residues 
    33793 
    33794 > hide #5.75 models
    33795 
    33796 Drag select of 5 residues 
    33797 
    33798 > hide #5.29 models
    33799 
    33800 Drag select of 110 residues 
    33801 
    33802 > hide #5.51 models
    33803 
    33804 > hide #5.52 models
    33805 
    33806 Drag select of 48 residues 
    33807 
    33808 > hide #5.143 models
    33809 
    33810 > hide #5.144 models
    33811 
    33812 Drag select of 100 residues 
    33813 
    33814 > hide #5.13 models
    33815 
    33816 > hide #5.14 models
    33817 
    33818 > select clear
    33819 
    33820 Drag select of 70 residues 
    33821 
    33822 > hide #5.28 models
    33823 
    33824 > volume #1 level 0.008564
    33825 
    33826 > close #5.8-10,12-30#5.11
    33827 
    33828 > close #5.41-53
    33829 
    33830 > close #5.64-87
    33831 
    33832 > close #5.90-95
    33833 
    33834 > close
    33835 > #5.102,105,108,111,114,117,120#5.100-101,103-104,106-107,109-110,112-113,115-116,118-119,121-126
    33836 
    33837 > close #5.129,131#5.130
    33838 
    33839 > close #5.138-140
    33840 
    33841 > close #5.143-145
    33842 
    33843 > show #5.1 models
    33844 
    33845 > hide #5.1 models
    33846 
    33847 > show #5.1 models
    33848 
    33849 > hide #5.1 models
    33850 
    33851 > close #5.1
    33852 
    33853 > hide #!5.134 models
    33854 
    33855 > show #!5.134 models
    33856 
    33857 > hide #!5.134 models
    33858 
    33859 > show #!5.134 models
    33860 
    33861 > hide #5.133 models
    33862 
    33863 > show #5.133 models
    33864 
    33865 > hide #5.133 models
    33866 
    33867 > show #5.133 models
    33868 
    33869 > hide #!5.134 models
    33870 
    33871 > show #!5.134 models
    33872 
    33873 > hide #!5.134 models
    33874 
    33875 > show #!5.134 models
    33876 
    33877 > hide #5.135 models
    33878 
    33879 > show #5.135 models
    33880 
    33881 > hide #!5.136 models
    33882 
    33883 > show #!5.136 models
    33884 
    33885 > hide #!5.136 models
    33886 
    33887 > show #!5.136 models
    33888 
    33889 > volume #1 level 0.002682
    33890 
    33891 > volume #1 level 0.0208
    33892 
    33893 > volume #1 level 0.01342
    33894 
    33895 > save /Users/shoichitachiyama/Desktop/For-Chimera-
    33896 > PflAB/Resegment/Docking_Jack_model.cxs includeMaps true
    33897 
    33898 ——— End of log from Thu Jul 10 22:06:04 2025 ———
    33899 
    33900 opened ChimeraX session 
    33901 
    33902 > open /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY.mrc
    33903 
    33904 Opened PflABY.mrc as #6, grid size 200,200,200, pixel 2.14, shown at level
    33905 0.0308, step 1, values float32 
    33906 
    33907 > hide #!2 models
    33908 
    33909 > hide #!1 models
    33910 
    33911 > volume #6 level 0.00115
    33912 
    33913 > surface dust #6 size 21.4
    33914 
    33915 > surface dust #6 size 50
    33916 
    33917 > vop gaussian #6 sd 3
    33918 
    33919 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    33920 step 1, values float32 
    33921 
    33922 > volume #7 level 0.00115
    33923 
    33924 > close #7
    33925 
    33926 > vop gaussian #6 sd 2
    33927 
    33928 Opened PflABY.mrc gaussian as #7, grid size 200,200,200, pixel 2.14, shown at
    33929 step 1, values float32 
    33930 
    33931 > volume #7 level 0.00115
    33932 
    33933 > hide #!7 models
    33934 
    33935 > color #7 #5e5e5e80 models
    33936 
    33937 > show #!7 models
    33938 
    33939 > hide #5.2 models
    33940 
    33941 > show #5.2 models
    33942 
    33943 > hide #5.2 models
    33944 
    33945 > hide #5.3 models
    33946 
    33947 > hide #!5 models
    33948 
    33949 > show #!5 models
    33950 
    33951 > hide #!7 models
    33952 
    33953 Drag select of 2343 residues 
    33954 
    33955 > select clear
    33956 
    33957 > view orient
    33958 
    33959 > turn x 90
    33960 
    33961 [Repeated 2 time(s)]Drag select of 1274 residues 
    33962 
    33963 > select add #5.4
    33964 
    33965 10820 atoms, 807 bonds, 1318 residues, 28 models selected 
    33966 
    33967 > select subtract #5.4
    33968 
    33969 10021 atoms, 1220 residues, 27 models selected 
    33970 
    33971 > hide #5.4 models
    33972 
    33973 > hide #5.5 models
    33974 
    33975 > hide #5.6 models
    33976 
    33977 > hide #5.7 models
    33978 
    33979 > hide #5.31 models
    33980 
    33981 > hide #5.32 models
    33982 
    33983 > hide #5.33 models
    33984 
    33985 > hide #5.34 models
    33986 
    33987 > hide #5.35 models
    33988 
    33989 > hide #5.36 models
    33990 
    33991 > hide #5.37 models
    33992 
    33993 > hide #5.38 models
    33994 
    33995 > hide #5.39 models
    33996 
    33997 > hide #5.40 models
    33998 
    33999 > hide #5.54 models
    34000 
    34001 > hide #5.55 models
    34002 
    34003 > hide #5.56 models
    34004 
    34005 > hide #5.57 models
    34006 
    34007 > hide #5.58 models
    34008 
    34009 > hide #5.59 models
    34010 
    34011 > hide #5.60 models
    34012 
    34013 > hide #5.61 models
    34014 
    34015 > hide #5.62 models
    34016 
    34017 > hide #5.63 models
    34018 
    34019 > hide #5.146 models
    34020 
    34021 > hide #5.147 models
    34022 
    34023 > hide #5.148 models
    34024 
    34025 > hide #5.149 models
    34026 
    34027 > select clear
    34028 
    34029 > select add #5.88
    34030 
    34031 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34032 
    34033 > select add #5.89
    34034 
    34035 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34036 
    34037 > select add #5.96
    34038 
    34039 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    34040 
    34041 > select add #5.97
    34042 
    34043 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    34044 
    34045 > select add #5.98
    34046 
    34047 6175 atoms, 6205 bonds, 775 residues, 5 models selected 
    34048 
    34049 > select add #5.99
    34050 
    34051 7410 atoms, 7446 bonds, 930 residues, 6 models selected 
    34052 
    34053 > select add #5.127
    34054 
    34055 8602 atoms, 8664 bonds, 1079 residues, 7 models selected 
    34056 
    34057 > select add #5.128
    34058 
    34059 13705 atoms, 13860 bonds, 1 pseudobond, 1712 residues, 9 models selected 
    34060 
    34061 > select add #5.132
    34062 
    34063 18808 atoms, 19056 bonds, 2 pseudobonds, 2345 residues, 11 models selected 
    34064 
    34065 > select add #5.133
    34066 
    34067 20000 atoms, 20274 bonds, 2 pseudobonds, 2494 residues, 12 models selected 
    34068 
    34069 > select add #5.134
    34070 
    34071 25103 atoms, 25470 bonds, 3 pseudobonds, 3127 residues, 14 models selected 
    34072 
    34073 > select add #5.135
    34074 
    34075 26295 atoms, 26688 bonds, 3 pseudobonds, 3276 residues, 15 models selected 
    34076 
    34077 > select add #5.136
    34078 
    34079 31398 atoms, 31884 bonds, 4 pseudobonds, 3909 residues, 17 models selected 
    34080 
    34081 > select add #5.137
    34082 
    34083 36469 atoms, 37040 bonds, 4 pseudobonds, 4530 residues, 18 models selected 
    34084 
    34085 > select add #5.141
    34086 
    34087 41540 atoms, 42196 bonds, 4 pseudobonds, 5151 residues, 19 models selected 
    34088 
    34089 > select add #5.142
    34090 
    34091 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 20 models selected 
    34092 
    34093 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/FlgY_PflAB_JMB.pdb
    34094 > selectedOnly true
    34095 
    34096 > open /Users/shoichi/Desktop/Resegment-Fixed/Part3/FlgY_PflAB_JMB.pdb
    34097 
    34098 Summary of feedback from opening /Users/shoichi/Desktop/Resegment-
    34099 Fixed/Part3/FlgY_PflAB_JMB.pdb 
    34100 --- 
    34101 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    34102 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    34103 42 
    34104 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    34105 8 
    34106 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    34107 1 7 
    34108 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    34109 1 3 
    34110 491 messages similar to the above omitted 
    34111  
    34112 Chain information for FlgY_PflAB_JMB.pdb 
    34113 --- 
    34114 Chain | Description 
    34115 8.1/BN 8.2/BO 8.3/BV 8.4/BW 8.5/BX 8.6/BY | No description available 
    34116 8.7/d 8.10/j 8.12/l | No description available 
    34117 8.8/e 8.9/i 8.11/k 8.13/m | No description available 
    34118 8.14/n 8.15/r 8.16/s | No description available 
    34119  
    34120 
    34121 > select add #5
    34122 
    34123 70581 atoms, 71562 bonds, 4 pseudobonds, 8712 residues, 51 models selected 
    34124 
    34125 > hide #!5 models
    34126 
    34127 > select subtract #5
    34128 
    34129 Nothing selected 
    34130 
    34131 > show #!7 models
    34132 
    34133 > show #!3 models
    34134 
    34135 > hide #!3 models
    34136 
    34137 > show #!3 models
    34138 
    34139 > hide #!3 models
    34140 
    34141 > hide #!7 models
    34142 
    34143 > show #!7 models
    34144 
    34145 > select add #8.1
    34146 
    34147 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34148 
    34149 > select subtract #8.1
    34150 
    34151 Nothing selected 
    34152 
    34153 > select add #8.16
    34154 
    34155 5071 atoms, 5156 bonds, 621 residues, 1 model selected 
    34156 
    34157 > select add #8.15
    34158 
    34159 10142 atoms, 10312 bonds, 1242 residues, 2 models selected 
    34160 
    34161 > select add #8.14
    34162 
    34163 15213 atoms, 15468 bonds, 1863 residues, 3 models selected 
    34164 
    34165 > select add #8.13
    34166 
    34167 20316 atoms, 20664 bonds, 1 pseudobond, 2496 residues, 5 models selected 
    34168 
    34169 > select subtract #8.13
    34170 
    34171 15213 atoms, 15468 bonds, 1863 residues, 3 models selected 
    34172 
    34173 > select add #8.12
    34174 
    34175 16405 atoms, 16686 bonds, 2012 residues, 4 models selected 
    34176 
    34177 > select add #8.11
    34178 
    34179 21508 atoms, 21882 bonds, 1 pseudobond, 2645 residues, 6 models selected 
    34180 
    34181 > select subtract #8.11
    34182 
    34183 16405 atoms, 16686 bonds, 2012 residues, 4 models selected 
    34184 
    34185 > select add #8.10
    34186 
    34187 17597 atoms, 17904 bonds, 2161 residues, 5 models selected 
    34188 
    34189 > select add #8.9
    34190 
    34191 22700 atoms, 23100 bonds, 1 pseudobond, 2794 residues, 7 models selected 
    34192 
    34193 > select subtract #8.9
    34194 
    34195 17597 atoms, 17904 bonds, 2161 residues, 5 models selected 
    34196 
    34197 > select add #8.8
    34198 
    34199 22700 atoms, 23100 bonds, 1 pseudobond, 2794 residues, 7 models selected 
    34200 
    34201 > select subtract #8.8
    34202 
    34203 17597 atoms, 17904 bonds, 2161 residues, 5 models selected 
    34204 
    34205 > select add #8.7
    34206 
    34207 18789 atoms, 19122 bonds, 2310 residues, 6 models selected 
    34208 
    34209 > color sel #ffea0eff models
    34210 
    34211 > color sel #ffea0eff
    34212 
    34213 > color sel #a7c5d2ff models
    34214 
    34215 > select clear
    34216 
    34217 > color sel #ffea0eff models
    34218 
    34219 > color sel #ca4949ff models
    34220 
    34221 > select add #8.7
    34222 
    34223 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    34224 
    34225 > select add #8.10
    34226 
    34227 2384 atoms, 2436 bonds, 298 residues, 2 models selected 
    34228 
    34229 > select add #8.12
    34230 
    34231 3576 atoms, 3654 bonds, 447 residues, 3 models selected 
    34232 
    34233 > select add #8.14
    34234 
    34235 8647 atoms, 8810 bonds, 1068 residues, 4 models selected 
    34236 
    34237 > select add #8.15
    34238 
    34239 13718 atoms, 13966 bonds, 1689 residues, 5 models selected 
    34240 
    34241 > select add #8.16
    34242 
    34243 18789 atoms, 19122 bonds, 2310 residues, 6 models selected 
    34244 
    34245 > color sel #ca4949ff models
    34246 
    34247 > select clear
    34248 
    34249 > select add #8.1
    34250 
    34251 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34252 
    34253 > select subtract #8.1
    34254 
    34255 Nothing selected 
    34256 
    34257 > select add #8.8
    34258 
    34259 5103 atoms, 5196 bonds, 1 pseudobond, 633 residues, 2 models selected 
    34260 
    34261 > select add #8.11
    34262 
    34263 10206 atoms, 10392 bonds, 2 pseudobonds, 1266 residues, 4 models selected 
    34264 
    34265 > select add #8.9
    34266 
    34267 15309 atoms, 15588 bonds, 3 pseudobonds, 1899 residues, 6 models selected 
    34268 
    34269 > select add #8.13
    34270 
    34271 20412 atoms, 20784 bonds, 4 pseudobonds, 2532 residues, 8 models selected 
    34272 
    34273 > color sel magenta models
    34274 
    34275 > select clear
    34276 
    34277 > select add #8.1
    34278 
    34279 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34280 
    34281 > select add #8.2
    34282 
    34283 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34284 
    34285 > select subtract #8.2
    34286 
    34287 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34288 
    34289 > select add #8.3
    34290 
    34291 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34292 
    34293 > select subtract #8.3
    34294 
    34295 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34296 
    34297 > select add #8.4
    34298 
    34299 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34300 
    34301 > select subtract #8.4
    34302 
    34303 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34304 
    34305 > select add #8.5
    34306 
    34307 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34308 
    34309 > select add #8.4
    34310 
    34311 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    34312 
    34313 > select subtract #8.4
    34314 
    34315 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34316 
    34317 > select add #8.3
    34318 
    34319 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    34320 
    34321 > color sel orchid models
    34322 
    34323 > select add #8.2
    34324 
    34325 4940 atoms, 4964 bonds, 620 residues, 4 models selected 
    34326 
    34327 > select clear
    34328 
    34329 > select add #8.2
    34330 
    34331 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34332 
    34333 > select add #8.4
    34334 
    34335 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34336 
    34337 > select add #8.6
    34338 
    34339 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    34340 
    34341 > color sel #bf370fff models
    34342 
    34343 > color sel #bf6f27ff models
    34344 
    34345 > select clear
    34346 
    34347 > color sel #e9cdeaff models
    34348 
    34349 > select add #8.2
    34350 
    34351 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    34352 
    34353 > select add #8.4
    34354 
    34355 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    34356 
    34357 > select add #8.6
    34358 
    34359 3705 atoms, 3723 bonds, 465 residues, 3 models selected 
    34360 
    34361 > color sel #e9cdeaff models
    34362 
    34363 > select clear
    34364 
    34365 > ui tool show "Segment Map"
    34366 
    34367 The cached device pixel ratio value was stale on window expose. Please file a
    34368 QTBUG which explains how to reproduce. 
    34369 
    34370 Segmenting PflABY.mrc gaussian, density threshold 0.001150 
    34371 Showing 30 region surfaces 
    34372 258 watershed regions, grouped to 30 regions 
    34373 Showing PflABY gaussian.seg - 30 regions, 30 surfaces 
    34374 
    34375 > select #9.13
    34376 
    34377 1 model selected 
    34378 
    34379 > select add #9.17
    34380 
    34381 2 models selected 
    34382 
    34383 > select add #9.10
    34384 
    34385 3 models selected 
    34386 
    34387 > select add #9.18
    34388 
    34389 4 models selected 
    34390 
    34391 > select add #9.23
    34392 
    34393 5 models selected 
    34394 
    34395 > select add #9.6
    34396 
    34397 6 models selected 
    34398 
    34399 > close #9
    34400 
    34401 Segmenting PflABY.mrc, density threshold 0.001150 
    34402 Only showing 60 of 625 regions. 
    34403 Showing 60 of 625 region surfaces 
    34404 16069 watershed regions, grouped to 625 regions 
    34405 Showing PflABY.seg - 625 regions, 60 surfaces 
    34406 
    34407 > select clear
    34408 
    34409 > select #9.18
    34410 
    34411 1 model selected 
    34412 
    34413 > select add #9.16
    34414 
    34415 2 models selected 
    34416 
    34417 > select add #9.11
    34418 
    34419 3 models selected 
    34420 
    34421 > select add #9.7
    34422 
    34423 4 models selected 
    34424 
    34425 > select add #9.22
    34426 
    34427 5 models selected 
    34428 
    34429 > select add #9.15
    34430 
    34431 6 models selected 
    34432 Grouped 6 regions 
    34433 
    34434 The cached device pixel ratio value was stale on window expose. Please file a
    34435 QTBUG which explains how to reproduce. 
    34436 
    34437 Opened PflABY_imasked as #10, grid size 200,200,200, pixel 2.14, shown at step
    34438 1, values float32 
    34439 
    34440 The cached device pixel ratio value was stale on window expose. Please file a
    34441 QTBUG which explains how to reproduce. 
    34442 
    34443 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    34444 > models #10
    34445 
    34446 > close #9
    34447 
    34448 > hide #!7 models
    34449 
    34450 > color #10 #42424233 models
    34451 
    34452 > color #10 #a9a9a94d models
    34453 
    34454 Segmenting PflABY.mrc, density threshold 0.001150 
    34455 Only showing 60 of 625 regions. 
    34456 Showing 60 of 625 region surfaces 
    34457 16069 watershed regions, grouped to 625 regions 
    34458 Showing PflABY.seg - 625 regions, 60 surfaces 
    34459 
    34460 > select #9.18
    34461 
    34462 1 model selected 
    34463 
    34464 > select add #9.16
    34465 
    34466 2 models selected 
    34467 
    34468 > select add #9.11
    34469 
    34470 3 models selected 
    34471 
    34472 > select add #9.15
    34473 
    34474 4 models selected 
    34475 
    34476 > select add #9.22
    34477 
    34478 5 models selected 
    34479 
    34480 > select add #9.7
    34481 
    34482 6 models selected 
    34483 
    34484 > select add #9.31
    34485 
    34486 7 models selected 
    34487 Drag select of 22750, 4474 of 7172 triangles, 22803, 51 of 5408 triangles,
    34488 22795, 2202 of 4036 triangles, 22888, 205 of 4104 triangles, 10
    34489 PflABY_out_side-spokes.mrc 
    34490 Grouped 11 regions 
    34491 
    34492 > select subtract #10
    34493 
    34494 1 model selected 
    34495 
    34496 > select clear
    34497 
    34498 > select #9.6
    34499 
    34500 1 model selected 
    34501 Ungrouped to 4 regions 
    34502 Ungrouped to 20 regions, but did not show all surfaces, see Options 
    34503 Ungrouped to 46 regions, but did not show all surfaces, see Options 
    34504 Ungrouped to 23 regions, but did not show their surfaces, see Options 
    34505 
    34506 > hide #!10 models
    34507 
    34508 Only showing 60 of 688 regions. 
    34509 Showing 60 of 688 region surfaces 
    34510 
    34511 > select clear
    34512 
    34513 > select #9.7
    34514 
    34515 1 model selected 
    34516 
    34517 > select add #9.38
    34518 
    34519 2 models selected 
    34520 
    34521 > select subtract #9.38
    34522 
    34523 1 model selected 
    34524 
    34525 > select add #9.54
    34526 
    34527 2 models selected 
    34528 
    34529 > select add #9.62
    34530 
    34531 3 models selected 
    34532 
    34533 > select add #9.38
    34534 
    34535 4 models selected 
    34536 Grouped 4 regions 
    34537 Opened PflABY_imasked as #11, grid size 200,200,200, pixel 2.14, shown at step
    34538 1, values float32 
    34539 
    34540 The cached device pixel ratio value was stale on window expose. Please file a
    34541 QTBUG which explains how to reproduce. 
    34542 
    34543 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    34544 > models #11
    34545 
    34546 > close #10
    34547 
    34548 > hide #!8 models
    34549 
    34550 > select add #9
    34551 
    34552 58 models selected 
    34553 
    34554 > select subtract #9
    34555 
    34556 Nothing selected 
    34557 
    34558 > hide #!9 models
    34559 
    34560 > color #11 #a9a9a94d models
    34561 
    34562 > show #!5 models
    34563 
    34564 > hide #!5 models
    34565 
    34566 > show #!8 models
    34567 
    34568 > surface dust #11 size 21.4
    34569 
    34570 Segmenting PflABY.mrc, density threshold 0.001150 
    34571 Only showing 60 of 625 regions. 
    34572 Showing 60 of 625 region surfaces 
    34573 16069 watershed regions, grouped to 625 regions 
    34574 Showing PflABY.seg - 625 regions, 60 surfaces 
    34575 
    34576 > hide #!11 models
    34577 
    34578 > hide #!8 models
    34579 
    34580 > show #!8 models
    34581 
    34582 > select #9.11
    34583 
    34584 1 model selected 
    34585 
    34586 > select add #9.16
    34587 
    34588 2 models selected 
    34589 
    34590 > select add #9.18
    34591 
    34592 3 models selected 
    34593 
    34594 > select add #9.31
    34595 
    34596 4 models selected 
    34597 Grouped 4 regions 
    34598 
    34599 > select clear
    34600 
    34601 > select #9.6
    34602 
    34603 1 model selected 
    34604 Ungrouped to 4 regions 
    34605 Ungrouped to 20 regions, but did not show all surfaces, see Options 
    34606 Ungrouped to 36 regions, but did not show all surfaces, see Options 
    34607 Ungrouped to 18 regions, but did not show their surfaces, see Options 
    34608 Only showing 60 of 686 regions. 
    34609 Showing 60 of 686 region surfaces 
    34610 
    34611 > select #9.11
    34612 
    34613 1 model selected 
    34614 
    34615 > select add #9.65
    34616 
    34617 2 models selected 
    34618 
    34619 > select add #9.62
    34620 
    34621 3 models selected 
    34622 
    34623 > select add #9.61
    34624 
    34625 4 models selected 
    34626 
    34627 > select add #9.71
    34628 
    34629 5 models selected 
    34630 
    34631 > select add #9.10
    34632 
    34633 6 models selected 
    34634 
    34635 > select #9.11
    34636 
    34637 1 model selected 
    34638 
    34639 > select #9.65
    34640 
    34641 1 model selected 
    34642 
    34643 > select add #9.62
    34644 
    34645 2 models selected 
    34646 
    34647 > select add #9.61
    34648 
    34649 3 models selected 
    34650 
    34651 > select add #9.11
    34652 
    34653 4 models selected 
    34654 Grouped 4 regions 
    34655 
    34656 > select #9.71
    34657 
    34658 1 model selected 
    34659 
    34660 > select #9.6
    34661 
    34662 1 model selected 
    34663 
    34664 > select #9.10
    34665 
    34666 1 model selected 
    34667 Ungrouped to 2 regions 
    34668 Ungrouped to 9 regions, but did not show all surfaces, see Options 
    34669 Ungrouped to 22 regions, but did not show all surfaces, see Options 
    34670 Ungrouped to 0 regions, but did not show their surfaces, see Options 
    34671 Only showing 60 of 710 regions. 
    34672 Showing 60 of 710 region surfaces 
    34673 
    34674 > select #9.10
    34675 
    34676 1 model selected 
    34677 
    34678 > select add #9.62
    34679 
    34680 2 models selected 
    34681 
    34682 > select add #9.59
    34683 
    34684 3 models selected 
    34685 
    34686 > select add #9.55
    34687 
    34688 4 models selected 
    34689 
    34690 > select #9.11
    34691 
    34692 1 model selected 
    34693 
    34694 > select #9.10
    34695 
    34696 1 model selected 
    34697 
    34698 > select add #9.55
    34699 
    34700 2 models selected 
    34701 
    34702 > select #9.11
    34703 
    34704 1 model selected 
    34705 
    34706 > select #9.10
    34707 
    34708 1 model selected 
    34709 
    34710 > select add #9.59
    34711 
    34712 2 models selected 
    34713 
    34714 > select add #9.62
    34715 
    34716 3 models selected 
    34717 Grouped 3 regions 
    34718 
    34719 > select add #9.11
    34720 
    34721 2 models selected 
    34722 
    34723 > select add #9.7
    34724 
    34725 3 models selected 
    34726 
    34727 > select add #9.22
    34728 
    34729 4 models selected 
    34730 
    34731 > select add #9.15
    34732 
    34733 5 models selected 
    34734 Grouped 5 regions 
    34735 Opened PflABY_imasked as #10, grid size 200,200,200, pixel 2.14, shown at step
    34736 1, values float32 
    34737 
    34738 The cached device pixel ratio value was stale on window expose. Please file a
    34739 QTBUG which explains how to reproduce. 
    34740 
    34741 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    34742 > models #11
    34743 
    34744 > hide #!9 models
    34745 
    34746 > select clear
    34747 
    34748 > show #!11 models
    34749 
    34750 > hide #!10 models
    34751 
    34752 > hide #!11 models
    34753 
    34754 > show #!10 models
    34755 
    34756 The cached device pixel ratio value was stale on window expose. Please file a
    34757 QTBUG which explains how to reproduce. 
    34758 
    34759 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/PflABY_out_side-spokes.mrc
    34760 > models #10
    34761 
    34762 > close #11
    34763 
    34764 > color #10 #a9a9a94d models
    34765 
    34766 > surface dust #10 size 21.4
    34767 
    34768 > vop gaussian #10 sd 2
    34769 
    34770 Opened PflABY_out_side-spokes.mrc gaussian as #11, grid size 200,200,200,
    34771 pixel 2.14, shown at step 1, values float32 
    34772 
    34773 > volume #11 level 0.00115
    34774 
    34775 > color #11 #a9a9a94d models
    34776 
    34777 > combine #8
    34778 
    34779 > ui tool show "Fit in Map"
    34780 
    34781 The cached device pixel ratio value was stale on window expose. Please file a
    34782 QTBUG which explains how to reproduce. 
    34783 
    34784 [Repeated 1 time(s)]
    34785 
    34786 > fitmap #12 inMap #11
    34787 
    34788 Fit molecule combination (#12) to map PflABY_out_side-spokes.mrc gaussian
    34789 (#11) using 46611 atoms 
    34790 average map value = 0.02939, steps = 60 
    34791 shifted from previous position = 1.24 
    34792 rotated from previous position = 1.72 degrees 
    34793 atoms outside contour = 7665, contour level = 0.00115 
    34794  
    34795 Position of combination (#12) relative to PflABY_out_side-spokes.mrc gaussian
    34796 (#11) coordinates: 
    34797 Matrix rotation and translation 
    34798 0.99958992 0.01868787 -0.02169684 1.39946613 
    34799 -0.01887900 0.99978446 -0.00863789 5.21627993 
    34800 0.02153074 0.00904396 0.99972728 -6.69400298 
    34801 Axis 0.29500325 -0.72120711 -0.62676422 
    34802 Axis point 286.86842756 0.00000000 47.57096221 
    34803 Rotation angle (degrees) 1.71734906 
    34804 Shift along axis 0.84639044 
    34805  
    34806 
    34807 > hide #!8 models
    34808 
    34809 > view orient
    34810 
    34811 Drag select of 114 residues 
    34812 
    34813 > hide sel cartoons
    34814 
    34815 > select clear
    34816 
    34817 > ui tool show "Map Eraser"
    34818 
    34819 > volume erase #11 center 365.25,312.43,309.2 radius 54.908
    34820 
    34821 > volume erase #11 center 379.53,297.75,271.6 radius 54.908
    34822 
    34823 > view orient
    34824 
    34825 > hide #13 models
    34826 
    34827 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Fitting_PflABY-
    34828 > JMB_07112025.cxs includeMaps true
    34829 
    34830 > select ~sel & ##selected
    34831 
    34832 Nothing selected 
    34833 
    34834 > select ~sel & ##selected
    34835 
    34836 Nothing selected 
    34837 
    34838 > select ~sel & ##selected
    34839 
    34840 Nothing selected 
    34841 
    34842 > select ~sel & ##selected
    34843 
    34844 Nothing selected 
    34845 
    34846 > select ~sel & ##selected
    34847 
    34848 Nothing selected 
    34849 
    34850 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    34851 > transparentBackground true
    34852 
    34853 > color #11 #a9a9a999 models
    34854 
    34855 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    34856 > transparentBackground true
    34857 
    34858 > color #11 darkgrey models
    34859 
    34860 > color #11 #929292ff models
    34861 
    34862 > color #11 darkgrey models
    34863 
    34864 > color #11 #919191ff models
    34865 
    34866 > color #11 #91919100 models
    34867 
    34868 > color #11 #91919199 models
    34869 
    34870 > color #11 #91919180 models
    34871 
    34872 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    34873 > transparentBackground true
    34874 
    34875 > color #11 silver models
    34876 
    34877 > color #11 darkgrey models
    34878 
    34879 > color #11 silver models
    34880 
    34881 > color #11 darkgrey models
    34882 
    34883 > hide #!11 models
    34884 
    34885 > show #!11 models
    34886 
    34887 > color #11 #929292ff models
    34888 
    34889 > color #11 silver models
    34890 
    34891 > color #11 #c0c0c080 models
    34892 
    34893 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    34894 > transparentBackground true
    34895 
    34896 > lighting soft
    34897 
    34898 > graphics silhouettes true
    34899 
    34900 > graphics silhouettes false
    34901 
    34902 > graphics silhouettes true
    34903 
    34904 > set bgColor white
    34905 
    34906 > graphics silhouettes false
    34907 
    34908 > graphics silhouettes true
    34909 
    34910 > set bgColor black
    34911 
    34912 > save /Users/shoichi/Desktop/Fig2-G_07112025.png supersample 2
    34913 > transparentBackground true
    34914 
    34915 > ui tool show "Segment Map"
    34916 
    34917 Segmenting PflABY.mrc, density threshold 0.001150 
    34918 Showing 625 region surfaces 
    34919 16069 watershed regions, grouped to 625 regions 
    34920 Showing PflABY.seg - 625 regions, 625 surfaces 
    34921 
    34922 > hide #!12 models
    34923 
    34924 > hide #!11 models
    34925 
    34926 > show #!12 models
    34927 
    34928 Drag select of 22931, 296 of 5252 triangles, 22828, 1098 of 4036 triangles,
    34929 22857, 3625 of 4104 triangles, 22887, 156 of 3972 triangles, 22885, 202 of
    34930 3876 triangles, 22897, 1330 of 3876 triangles, 22947, 882 of 3604 triangles,
    34931 22972, 2658 of 3596 triangles, 22790, 1600 of 3652 triangles, 22869, 112 of
    34932 3448 triangles, 22881, 927 of 3464 triangles, 22874, 2551 of 3560 triangles,
    34933 22763, 792 of 3428 triangles, 22909, 1334 of 3244 triangles, 22039, 2125 of
    34934 3168 triangles, 23021, 1998 of 3032 triangles, 22940, 1884 of 2876 triangles,
    34935 22823, 1470 of 2860 triangles, 22939, 1917 of 2884 triangles, 22755, 2707 of
    34936 2760 triangles, 22945, 2552 of 2568 triangles, 23032, 537 of 2484 triangles,
    34937 22787, 1681 of 2532 triangles, 22405, 1437 of 2432 triangles, 22918, 1571 of
    34938 2324 triangles, 22845, 980 of 2252 triangles, 22903, 2427 of 2460 triangles,
    34939 22760, 1215 of 2276 triangles, 22917, 703 of 2216 triangles, 22212, 88 of 1972
    34940 triangles, 22781, 1134 of 2180 triangles, 22772, 1526 of 2032 triangles,
    34941 22853, 600 of 2024 triangles, 22911, 776 of 1888 triangles, 22834, 1503 of
    34942 1988 triangles, 22839, 1216 of 2048 triangles, 22746, 1121 of 1948 triangles,
    34943 22770, 1220 of 1960 triangles, 23042, 1697 of 1840 triangles, 23004, 956 of
    34944 1760 triangles, 22352, 390 of 1696 triangles, 22950, 1568 of 1700 triangles,
    34945 22865, 1156 of 1612 triangles, 22371, 22809, 1276 of 1656 triangles, 22305,
    34946 308 of 1612 triangles, 22404, 1244 of 1596 triangles, 22475, 328 of 1584
    34947 triangles, 22377, 259 of 1496 triangles, 22819, 442 of 1540 triangles, 22989,
    34948 1113 of 1408 triangles, 22930, 344 of 1308 triangles, 20627, 971 of 1288
    34949 triangles, 22756, 661 of 1292 triangles, 22916, 1112 of 1308 triangles, 22143,
    34950 22270, 1076 of 1264 triangles, 22987, 1022 of 1148 triangles, 22336, 638 of
    34951 1132 triangles, 20155, 748 of 1100 triangles, 22205, 772 of 1120 triangles,
    34952 22256, 99 of 916 triangles, 22502, 1047 of 1076 triangles, 22974, 23017,
    34953 23013, 359 of 984 triangles, 22831, 703 of 1036 triangles, 22360, 289 of 1048
    34954 triangles, 22242, 747 of 1024 triangles, 22139, 916 of 1000 triangles, 22415,
    34955 906 of 940 triangles, 22376, 911 of 1008 triangles, 22975, 340 of 952
    34956 triangles, 22365, 580 of 1004 triangles, 20287, 458 of 876 triangles, 20407,
    34957 135 of 944 triangles, 22421, 892 of 896 triangles, 22012, 22076, 796 of 800
    34958 triangles, 22148, 582 of 784 triangles, 22497, 625 of 804 triangles, 23025,
    34959 671 of 752 triangles, 22299, 648 of 740 triangles, 22574, 646 of 716
    34960 triangles, 22264, 348 of 772 triangles, 22899, 688 of 788 triangles, 22866, 48
    34961 of 692 triangles, 22797, 76 of 720 triangles, 22358, 499 of 696 triangles,
    34962 22355, 544 of 604 triangles, 22604, 22921, 120 of 600 triangles, 22610, 344 of
    34963 572 triangles, 22821, 163 of 540 triangles, 20518, 92 of 516 triangles, 22380,
    34964 370 of 556 triangles, 22973, 103 of 508 triangles, 22952, 22936, 225 of 488
    34965 triangles, 22924, 20128, 424 of 576 triangles, 22554, 180 of 492 triangles,
    34966 22023, 452 of 500 triangles, 22926, 276 of 476 triangles, 22927, 285 of 468
    34967 triangles, 22583, 21088, 20775, 220 of 376 triangles, 22111, 242 of 412
    34968 triangles, 22598, 21569, 22370, 240 of 356 triangles, 22925, 272 of 412
    34969 triangles, 21820, 19 of 376 triangles, 22985, 188 of 304 triangles, 21382,
    34970 21319, 274 of 288 triangles, 22684, 212 of 268 triangles, 21463, 21143, 95 of
    34971 252 triangles, 22115, 22696, 246 of 296 triangles, 22695, 48 of 328 triangles,
    34972 22935, 22817, 66 of 332 triangles, 22996, 45 of 236 triangles, 21330, 214 of
    34973 244 triangles, 21060, 21576, 22764, 208 of 264 triangles, 22420, 48 of 196
    34974 triangles, 21426, 97 of 232 triangles, 21436, 22901, 21975, 17035, 21368,
    34975 22089, 145 of 184 triangles, 21412, 95 of 124 triangles, 17425, 22533, 21670,
    34976 48 of 76 triangles, 15290, 17 of 56 triangles, 15088, 15175, 15135 
    34977 Drag select of 23038, 20 of 20192 triangles, 23006, 21 of 18912 triangles,
    34978 22934, 12 of 21656 triangles, 22812, 38 of 21436 triangles, 22961, 158 of 7316
    34979 triangles, 22806, 8877 of 9572 triangles, 22908, 8245 of 9216 triangles,
    34980 22784, 4842 of 7612 triangles, 22846, 7261 of 7484 triangles, 22943, 4668 of
    34981 7512 triangles, 22894, 22833, 22915, 366 of 6596 triangles, 22877, 6105 of
    34982 6376 triangles, 22829, 22872, 22959, 4517 of 5836 triangles, 22835, 4188 of
    34983 5540 triangles, 22814, 3687 of 5408 triangles, 22758, 4653 of 4688 triangles,
    34984 22822, 22991, 4103 of 4336 triangles, 22795, 3948 of 4336 triangles, 22788,
    34985 397 of 4320 triangles, 22937, 22780, 22847, 256 of 3688 triangles, 22762,
    34986 22993, 22967, 3476 of 3484 triangles, 22802, 22838, 2558 of 3252 triangles,
    34987 22963, 22929, 1730 of 2932 triangles, 22761, 22891, 1835 of 3080 triangles,
    34988 22855, 22941, 2580 of 2832 triangles, 22836, 2281 of 2808 triangles, 22849,
    34989 1924 of 2748 triangles, 22882, 22954, 440 of 2752 triangles, 22786, 23030,
    34990 22852, 2428 of 2544 triangles, 23033, 22902, 22907, 22867, 22914, 1800 of 2264
    34991 triangles, 22906, 2083 of 2324 triangles, 22369, 1988 of 2184 triangles,
    34992 22810, 180 of 2268 triangles, 22913, 22444, 1899 of 2180 triangles, 22752,
    34993 1968 of 2116 triangles, 23028, 22759, 1962 of 2196 triangles, 23029, 22785,
    34994 22463, 1476 of 2080 triangles, 22841, 1698 of 2060 triangles, 22944, 22745,
    34995 1832 of 2148 triangles, 22896, 23007, 22870, 22843, 23041, 21998, 22830,
    34996 22783, 22983, 1109 of 1956 triangles, 22850, 22791, 22765, 252 of 1808
    34997 triangles, 22803, 223 of 1776 triangles, 22933, 1329 of 1720 triangles, 22152,
    34998 23024, 1588 of 1820 triangles, 22864, 22988, 22103, 22769, 22227, 22507, 1462
    34999 of 1688 triangles, 22808, 23022, 22271, 22000, 1256 of 1696 triangles, 22171,
    35000 22949, 22966, 22425, 95 of 1696 triangles, 22964, 22757, 1360 of 1652
    35001 triangles, 22285, 496 of 1588 triangles, 22825, 22969, 1241 of 1432 triangles,
    35002 22960, 22311, 988 of 1480 triangles, 22922, 23011, 22811, 157 of 1348
    35003 triangles, 22863, 22488, 22096, 22072, 1136 of 1308 triangles, 22416, 952 of
    35004 1196 triangles, 22851, 1030 of 1240 triangles, 22873, 22799, 823 of 1248
    35005 triangles, 22515, 22505, 22958, 1197 of 1228 triangles, 22805, 22842, 22773,
    35006 1043 of 1232 triangles, 22801, 22768, 684 of 1228 triangles, 22951, 22920,
    35007 22409, 22858, 592 of 1176 triangles, 22861, 22314, 982 of 1104 triangles,
    35008 22986, 22198, 22304, 28 of 1064 triangles, 22910, 22704, 22820, 23003, 22879,
    35009 22876, 22138, 22383, 22538, 22968, 22957, 22982, 22815, 22826, 22439, 423 of
    35010 944 triangles, 22257, 764 of 948 triangles, 23026, 22300, 48 of 956 triangles,
    35011 22321, 354 of 972 triangles, 22743, 23009, 22144, 22250, 904 of 932 triangles,
    35012 22021, 22419, 273 of 836 triangles, 22888, 22994, 834 of 848 triangles, 22942,
    35013 22268, 22307, 712 of 828 triangles, 22793, 467 of 748 triangles, 22450, 22890,
    35014 781 of 872 triangles, 23018, 22002, 22932, 668 of 788 triangles, 22688, 22776,
    35015 22429, 796 of 804 triangles, 22003, 20263, 552 of 760 triangles, 22748, 22411,
    35016 23016, 22273, 22775, 22127, 20222, 22749, 68 of 740 triangles, 22424, 605 of
    35017 624 triangles, 22619, 180 of 720 triangles, 22434, 22729, 22946, 48 of 640
    35018 triangles, 22251, 22117, 22522, 20800, 22473, 22576, 22234, 22551, 22566, 120
    35019 of 628 triangles, 22750, 21914, 472 of 544 triangles, 22390, 22953, 22807, 216
    35020 of 548 triangles, 22816, 23002, 23037, 440 of 488 triangles, 22612, 22129,
    35021 21565, 22904, 306 of 532 triangles, 22970, 23034, 22159, 22151, 22905, 22327,
    35022 482 of 500 triangles, 22995, 23040, 22550, 372 of 408 triangles, 22248, 420 of
    35023 440 triangles, 22086, 362 of 388 triangles, 22731, 22656, 22854, 22580, 20974,
    35024 198 of 392 triangles, 22052, 20787, 112 of 472 triangles, 22716, 22343, 22840,
    35025 21273, 23000, 184 of 372 triangles, 22319, 22584, 22796, 22255, 22073, 22406,
    35026 23023, 22616, 21502, 21399, 21819, 23039, 20689, 22771, 22223, 22782, 21009,
    35027 22956, 17931, 16276, 20549, 21634, 22014, 185 of 264 triangles, 22504, 22309,
    35028 22132, 16560, 20836, 104 of 232 triangles, 22333, 22978, 18469, 21490, 16479,
    35029 22252, 156 of 204 triangles, 21408, 20722, 21700, 19727, 76 of 144 triangles,
    35030 19683, 21458, 16311, 21015, 16950, 16925, 20934, 20131, 21259, 19372, 22125,
    35031 19687, 99 of 100 triangles, 20208, 121, 4185, 1281, 3041, 3467, 3834 
    35032 
    35033 > select clear
    35034 
    35035 Showing 625 region surfaces 
    35036 Drag select of 22931, 609 of 5252 triangles, 22828, 1644 of 4036 triangles,
    35037 22857, 2664 of 4104 triangles, 22887, 110 of 3972 triangles, 22885, 389 of
    35038 3876 triangles, 22897, 266 of 3876 triangles, 22947, 1109 of 3604 triangles,
    35039 22895, 30 of 3696 triangles, 22972, 1881 of 3596 triangles, 22790, 2029 of
    35040 3652 triangles, 22881, 431 of 3464 triangles, 22874, 1745 of 3560 triangles,
    35041 22763, 642 of 3428 triangles, 22909, 1140 of 3244 triangles, 22039, 2024 of
    35042 3168 triangles, 23021, 1907 of 3032 triangles, 22940, 1821 of 2876 triangles,
    35043 22976, 351 of 2916 triangles, 22823, 298 of 2860 triangles, 22939, 222 of 2884
    35044 triangles, 22755, 624 of 2760 triangles, 22945, 1106 of 2568 triangles, 23032,
    35045 1032 of 2484 triangles, 22787, 1488 of 2532 triangles, 22405, 1722 of 2432
    35046 triangles, 22918, 1590 of 2324 triangles, 22845, 620 of 2252 triangles, 22903,
    35047 951 of 2460 triangles, 22760, 1097 of 2276 triangles, 22917, 667 of 2216
    35048 triangles, 22781, 435 of 2180 triangles, 22772, 188 of 2032 triangles, 22853,
    35049 744 of 2024 triangles, 22911, 297 of 1888 triangles, 22834, 1754 of 1988
    35050 triangles, 22839, 344 of 2048 triangles, 22746, 388 of 1948 triangles, 22770,
    35051 1110 of 1960 triangles, 23042, 1168 of 1840 triangles, 23004, 919 of 1760
    35052 triangles, 22352, 511 of 1696 triangles, 22950, 1229 of 1700 triangles, 22865,
    35053 772 of 1612 triangles, 22371, 1216 of 1652 triangles, 22809, 957 of 1656
    35054 triangles, 22305, 45 of 1612 triangles, 22404, 801 of 1596 triangles, 22475,
    35055 960 of 1584 triangles, 22377, 290 of 1496 triangles, 22819, 60 of 1540
    35056 triangles, 22989, 472 of 1408 triangles, 22060, 37 of 1388 triangles, 22930,
    35057 408 of 1308 triangles, 20627, 899 of 1288 triangles, 22981, 433 of 1364
    35058 triangles, 22756, 44 of 1292 triangles, 22916, 658 of 1308 triangles, 22143,
    35059 1120 of 1356 triangles, 22270, 772 of 1264 triangles, 22987, 148 of 1148
    35060 triangles, 22336, 1056 of 1132 triangles, 20155, 284 of 1100 triangles, 22205,
    35061 744 of 1120 triangles, 22256, 228 of 916 triangles, 22502, 248 of 1076
    35062 triangles, 23013, 92 of 984 triangles, 22360, 186 of 1048 triangles, 22139,
    35063 990 of 1000 triangles, 22415, 542 of 940 triangles, 22365, 104 of 1004
    35064 triangles, 20407, 281 of 944 triangles, 22421, 22012, 768 of 920 triangles,
    35065 22076, 449 of 800 triangles, 22148, 128 of 784 triangles, 22497, 268 of 804
    35066 triangles, 23025, 669 of 752 triangles, 22299, 566 of 740 triangles, 22574,
    35067 22264, 445 of 772 triangles, 22797, 45 of 720 triangles, 22358, 652 of 696
    35068 triangles, 22604, 398 of 612 triangles, 22921, 168 of 600 triangles, 22821, 88
    35069 of 540 triangles, 20518, 176 of 516 triangles, 22380, 357 of 556 triangles,
    35070 20128, 426 of 576 triangles, 22927, 348 of 468 triangles, 22583, 122 of 412
    35071 triangles, 21569, 43 of 360 triangles, 22925, 136 of 412 triangles, 23010, 9
    35072 of 324 triangles, 21382, 231 of 368 triangles, 21319, 240 of 288 triangles,
    35073 22115, 148 of 288 triangles, 22696, 248 of 296 triangles, 22935, 49 of 244
    35074 triangles, 21576, 100 of 280 triangles, 22764, 84 of 264 triangles, 21436,
    35075 21368, 22089, 17425, 73 of 136 triangles, 22533 
    35076 
    35077 > select clear
    35078 
    35079 > select #9.20
    35080 
    35081 1 model selected 
    35082 
    35083 > select add #9.17
    35084 
    35085 2 models selected 
    35086 
    35087 > select add #9.12
    35088 
    35089 3 models selected 
    35090 
    35091 > select add #9.5
    35092 
    35093 4 models selected 
    35094 
    35095 > select add #9.14
    35096 
    35097 5 models selected 
    35098 
    35099 > select add #9.27
    35100 
    35101 6 models selected 
    35102 
    35103 > select add #9.30
    35104 
    35105 7 models selected 
    35106 
    35107 > select add #9.4
    35108 
    35109 8 models selected 
    35110 
    35111 > select add #9.24
    35112 
    35113 9 models selected 
    35114 Grouped 9 regions 
    35115 
    35116 > select #9.1
    35117 
    35118 1 model selected 
    35119 Grouped 1 regions 
    35120 Showing 617 region surfaces 
    35121 
    35122 > select #9.1
    35123 
    35124 1 model selected 
    35125 
    35126 > select add #9.4
    35127 
    35128 2 models selected 
    35129 Grouped 2 regions 
    35130 Opened PflABY_imasked as #13, grid size 200,200,200, pixel 2.14, shown at step
    35131 1, values float32 
    35132 Segmenting PflABY_imasked, density threshold 0.001150 
    35133 Showing 11 region surfaces 
    35134 506 watershed regions, grouped to 11 regions 
    35135 Showing PflABY_imasked.seg - 11 regions, 11 surfaces 
    35136 
    35137 > hide #!12 models
    35138 
    35139 > show #!8 models
    35140 
    35141 > hide #8.1 models
    35142 
    35143 > hide #8.2 models
    35144 
    35145 > hide #8.3 models
    35146 
    35147 > hide #8.4 models
    35148 
    35149 > hide #8.5 models
    35150 
    35151 > hide #8.6 models
    35152 
    35153 > hide #8.7 models
    35154 
    35155 > show #8.7 models
    35156 
    35157 > hide #8.7 models
    35158 
    35159 > hide #!8.8 models
    35160 
    35161 > hide #!8.9 models
    35162 
    35163 > hide #8.16 models
    35164 
    35165 > show #8.16 models
    35166 
    35167 > hide #8.15 models
    35168 
    35169 > hide #8.14 models
    35170 
    35171 > select #9.7
    35172 
    35173 1 model selected 
    35174 
    35175 > select add #9.6
    35176 
    35177 2 models selected 
    35178 
    35179 > select add #9.4
    35180 
    35181 3 models selected 
    35182 
    35183 > hide #!13 models
    35184 
    35185 > select add #9.3
    35186 
    35187 4 models selected 
    35188 Grouped 4 regions 
    35189 
    35190 > select clear
    35191 
    35192 > select #9.3
    35193 
    35194 1 model selected 
    35195 
    35196 > select #9.9
    35197 
    35198 1 model selected 
    35199 Ungrouped to 2 regions 
    35200 Ungrouped to 4 regions 
    35201 Ungrouped to 9 regions 
    35202 Ungrouped to 15 regions 
    35203 Ungrouped to 0 regions 
    35204 
    35205 > select #9.12
    35206 
    35207 1 model selected 
    35208 
    35209 > select #9.12
    35210 
    35211 1 model selected 
    35212 
    35213 > select add #9.32
    35214 
    35215 2 models selected 
    35216 
    35217 > select clear
    35218 
    35219 > select #9.12
    35220 
    35221 1 model selected 
    35222 
    35223 > select add #9.32
    35224 
    35225 2 models selected 
    35226 
    35227 > select add #9.27
    35228 
    35229 3 models selected 
    35230 
    35231 > select add #9.24
    35232 
    35233 4 models selected 
    35234 
    35235 > select add #9.17
    35236 
    35237 5 models selected 
    35238 
    35239 > select add #9.4
    35240 
    35241 6 models selected 
    35242 
    35243 > select add #9.26
    35244 
    35245 7 models selected 
    35246 
    35247 > select add #9.10
    35248 
    35249 8 models selected 
    35250 Grouped 8 regions 
    35251 Showing 24 region surfaces 
    35252 
    35253 > select add #9.3
    35254 
    35255 2 models selected 
    35256 Grouped 2 regions 
    35257 
    35258 > select #9.2
    35259 
    35260 1 model selected 
    35261 Ungrouped to 2 regions 
    35262 Ungrouped to 21 regions 
    35263 Ungrouped to 43 regions 
    35264 Ungrouped to 16 regions 
    35265 Ungrouped to 0 regions 
    35266 
    35267 > select #9.70
    35268 
    35269 1 model selected 
    35270 
    35271 > select add #9.4
    35272 
    35273 2 models selected 
    35274 
    35275 > select #9.70
    35276 
    35277 1 model selected 
    35278 
    35279 > select #9.4
    35280 
    35281 1 model selected 
    35282 
    35283 > select add #9.70
    35284 
    35285 2 models selected 
    35286 Grouped 2 regions 
    35287 
    35288 > select add #9.16
    35289 
    35290 2 models selected 
    35291 
    35292 > select add #9.63
    35293 
    35294 3 models selected 
    35295 
    35296 > select add #9.40
    35297 
    35298 4 models selected 
    35299 
    35300 > select add #9.26
    35301 
    35302 5 models selected 
    35303 
    35304 > select add #9.42
    35305 
    35306 6 models selected 
    35307 
    35308 > select add #9.67
    35309 
    35310 7 models selected 
    35311 
    35312 > select add #9.66
    35313 
    35314 8 models selected 
    35315 
    35316 > select subtract #9.67
    35317 
    35318 7 models selected 
    35319 Grouped 7 regions 
    35320 
    35321 > select clear
    35322 
    35323 > select #9.67
    35324 
    35325 1 model selected 
    35326 
    35327 > show #!13 models
    35328 
    35329 > hide #!13 models
    35330 
    35331 > show #!12 models
    35332 
    35333 > hide #!12 models
    35334 
    35335 > select #9.67
    35336 
    35337 1 model selected 
    35338 
    35339 > select add #9.4
    35340 
    35341 2 models selected 
    35342 
    35343 > select add #9.60
    35344 
    35345 3 models selected 
    35346 
    35347 > select add #9.62
    35348 
    35349 4 models selected 
    35350 
    35351 > select subtract #9.62
    35352 
    35353 3 models selected 
    35354 
    35355 > select add #9.62
    35356 
    35357 4 models selected 
    35358 
    35359 > select add #9.41
    35360 
    35361 5 models selected 
    35362 Grouped 5 regions 
    35363 Showing 73 region surfaces 
    35364 
    35365 > select add #9.3
    35366 
    35367 2 models selected 
    35368 Grouped 2 regions 
    35369 
    35370 > select clear
    35371 
    35372 > select #9.3
    35373 
    35374 1 model selected 
    35375 
    35376 > select clear
    35377 
    35378 > select #9.27
    35379 
    35380 1 model selected 
    35381 
    35382 > select add #9.14
    35383 
    35384 2 models selected 
    35385 
    35386 > select #9.14
    35387 
    35388 1 model selected 
    35389 
    35390 > select add #9.24
    35391 
    35392 2 models selected 
    35393 
    35394 > select add #9.86
    35395 
    35396 3 models selected 
    35397 Grouped 3 regions 
    35398 
    35399 > select add #9.85
    35400 
    35401 2 models selected 
    35402 
    35403 > select add #9.17
    35404 
    35405 3 models selected 
    35406 
    35407 > select add #9.88
    35408 
    35409 4 models selected 
    35410 
    35411 > select subtract #9.4
    35412 
    35413 3 models selected 
    35414 
    35415 > select clear
    35416 
    35417 > select #9.4
    35418 
    35419 1 model selected 
    35420 
    35421 > select add #9.17
    35422 
    35423 2 models selected 
    35424 
    35425 > select add #9.85
    35426 
    35427 3 models selected 
    35428 Grouped 3 regions 
    35429 
    35430 > select add #9.59
    35431 
    35432 2 models selected 
    35433 Grouped 2 regions 
    35434 
    35435 > select add #9.88
    35436 
    35437 2 models selected 
    35438 Grouped 2 regions 
    35439 Showing 66 region surfaces 
    35440 
    35441 > select add #9.3
    35442 
    35443 2 models selected 
    35444 Grouped 2 regions 
    35445 
    35446 > select clear
    35447 
    35448 > select #9.5
    35449 
    35450 1 model selected 
    35451 Grouped 1 regions 
    35452 
    35453 > select add #9.3
    35454 
    35455 2 models selected 
    35456 Grouped 2 regions 
    35457 
    35458 > select clear
    35459 
    35460 > select #9.1
    35461 
    35462 1 model selected 
    35463 
    35464 > select add #9.8
    35465 
    35466 2 models selected 
    35467 Ungrouped to 6 regions 
    35468 Ungrouped to 16 regions 
    35469 Ungrouped to 50 regions 
    35470 Ungrouped to 77 regions 
    35471 Ungrouped to 0 regions 
    35472 
    35473 > select add #9.46
    35474 
    35475 1 model selected 
    35476 
    35477 > select add #9.193
    35478 
    35479 2 models selected 
    35480 
    35481 > select add #9.195
    35482 
    35483 3 models selected 
    35484 
    35485 > select #9.46
    35486 
    35487 1 model selected 
    35488 
    35489 > select #9.193
    35490 
    35491 1 model selected 
    35492 
    35493 > select add #9.46
    35494 
    35495 2 models selected 
    35496 
    35497 > select add #9.195
    35498 
    35499 3 models selected 
    35500 
    35501 > select add #9.14
    35502 
    35503 4 models selected 
    35504 Grouped 4 regions 
    35505 Showing 171 region surfaces 
    35506 
    35507 > select add #9.3
    35508 
    35509 2 models selected 
    35510 Grouped 2 regions 
    35511 
    35512 > select #9.162
    35513 
    35514 1 model selected 
    35515 
    35516 > select add #9.150
    35517 
    35518 2 models selected 
    35519 
    35520 > select clear
    35521 
    35522 > select #9.68
    35523 
    35524 1 model selected 
    35525 
    35526 > select add #9.24
    35527 
    35528 2 models selected 
    35529 
    35530 > select add #9.88
    35531 
    35532 3 models selected 
    35533 
    35534 > select add #9.157
    35535 
    35536 4 models selected 
    35537 
    35538 > select add #9.62
    35539 
    35540 5 models selected 
    35541 
    35542 > select subtract #9.62
    35543 
    35544 4 models selected 
    35545 Grouped 4 regions 
    35546 Showing 167 region surfaces 
    35547 
    35548 > select add #9.3
    35549 
    35550 2 models selected 
    35551 Grouped 2 regions 
    35552 
    35553 > select clear
    35554 
    35555 > select #9.162
    35556 
    35557 1 model selected 
    35558 
    35559 > select add #9.150
    35560 
    35561 2 models selected 
    35562 Grouped 2 regions 
    35563 
    35564 > select #9.149
    35565 
    35566 1 model selected 
    35567 
    35568 > select add #9.143
    35569 
    35570 2 models selected 
    35571 
    35572 > select add #9.166
    35573 
    35574 3 models selected 
    35575 
    35576 > select add #9.66
    35577 
    35578 4 models selected 
    35579 
    35580 > select add #9.60
    35581 
    35582 5 models selected 
    35583 
    35584 > select add #9.5
    35585 
    35586 6 models selected 
    35587 Grouped 6 regions 
    35588 
    35589 > select add #9.160
    35590 
    35591 2 models selected 
    35592 
    35593 > select #9.160
    35594 
    35595 1 model selected 
    35596 
    35597 > select add #9.3
    35598 
    35599 2 models selected 
    35600 Grouped 2 regions 
    35601 
    35602 > select clear
    35603 
    35604 > select #9.62
    35605 
    35606 1 model selected 
    35607 
    35608 > select add #9.3
    35609 
    35610 2 models selected 
    35611 Grouped 2 regions 
    35612 
    35613 > select #9.144
    35614 
    35615 1 model selected 
    35616 
    35617 > select add #9.3
    35618 
    35619 2 models selected 
    35620 Grouped 2 regions 
    35621 
    35622 > select add #9.40
    35623 
    35624 2 models selected 
    35625 Grouped 2 regions 
    35626 
    35627 > select #9.182
    35628 
    35629 1 model selected 
    35630 
    35631 > select add #9.178
    35632 
    35633 2 models selected 
    35634 
    35635 > select add #9.110
    35636 
    35637 3 models selected 
    35638 
    35639 > select add #9.3
    35640 
    35641 4 models selected 
    35642 Grouped 4 regions 
    35643 
    35644 > select #9.104
    35645 
    35646 1 model selected 
    35647 
    35648 > select add #9.103
    35649 
    35650 2 models selected 
    35651 
    35652 > select add #9.106
    35653 
    35654 3 models selected 
    35655 
    35656 > select add #9.5
    35657 
    35658 4 models selected 
    35659 Grouped 4 regions 
    35660 
    35661 > select add #9.146
    35662 
    35663 2 models selected 
    35664 
    35665 > select add #9.147
    35666 
    35667 3 models selected 
    35668 
    35669 > select add #9.145
    35670 
    35671 4 models selected 
    35672 
    35673 > select add #9.105
    35674 
    35675 5 models selected 
    35676 
    35677 > select add #9.67
    35678 
    35679 6 models selected 
    35680 
    35681 > select add #9.127
    35682 
    35683 7 models selected 
    35684 
    35685 > select add #9.125
    35686 
    35687 8 models selected 
    35688 
    35689 > select add #9.102
    35690 
    35691 9 models selected 
    35692 
    35693 > select subtract #9.102
    35694 
    35695 8 models selected 
    35696 
    35697 > select add #9.142
    35698 
    35699 9 models selected 
    35700 
    35701 > select add #9.102
    35702 
    35703 10 models selected 
    35704 
    35705 > select add #9.3
    35706 
    35707 11 models selected 
    35708 
    35709 > select subtract #9.3
    35710 
    35711 10 models selected 
    35712 
    35713 > select add #9.100
    35714 
    35715 11 models selected 
    35716 
    35717 > select subtract #9.100
    35718 
    35719 10 models selected 
    35720 
    35721 > select subtract #9.102
    35722 
    35723 9 models selected 
    35724 Grouped 9 regions 
    35725 
    35726 > select #9.102
    35727 
    35728 1 model selected 
    35729 
    35730 > select add #9.100
    35731 
    35732 2 models selected 
    35733 
    35734 > select clear
    35735 
    35736 > select #9.3
    35737 
    35738 1 model selected 
    35739 
    35740 > select add #9.141
    35741 
    35742 2 models selected 
    35743 
    35744 > select add #9.192
    35745 
    35746 3 models selected 
    35747 
    35748 > select add #9.102
    35749 
    35750 4 models selected 
    35751 
    35752 > select add #9.48
    35753 
    35754 5 models selected 
    35755 
    35756 > select add #9.47
    35757 
    35758 6 models selected 
    35759 Grouped 6 regions 
    35760 
    35761 > select add #9.100
    35762 
    35763 2 models selected 
    35764 Grouped 2 regions 
    35765 Showing 136 region surfaces 
    35766 
    35767 > select #9.27
    35768 
    35769 1 model selected 
    35770 
    35771 > select add #9.77
    35772 
    35773 2 models selected 
    35774 
    35775 > select add #9.5
    35776 
    35777 3 models selected 
    35778 Grouped 3 regions 
    35779 
    35780 > select clear
    35781 
    35782 Showing 134 region surfaces 
    35783 
    35784 > select #9.3
    35785 
    35786 1 model selected 
    35787 Opened PflABY_imasked_imasked as #14, grid size 200,200,200, pixel 2.14, shown
    35788 at step 1, values float32 
    35789 
    35790 The cached device pixel ratio value was stale on window expose. Please file a
    35791 QTBUG which explains how to reproduce. 
    35792 
    35793 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Single-Spoke-ring.mrc
    35794 > models #14
    35795 
    35796 > select add #9
    35797 
    35798 135 models selected 
    35799 
    35800 > select subtract #9
    35801 
    35802 Nothing selected 
    35803 
    35804 > hide #!9 models
    35805 
    35806 > show #!11 models
    35807 
    35808 > hide #!11 models
    35809 
    35810 > close #9-10
    35811 
    35812 > close #13
    35813 
    35814 > vop gaussian #14 sd 2
    35815 
    35816 Opened Single-Spoke-ring.mrc gaussian as #9, grid size 200,200,200, pixel
    35817 2.14, shown at step 1, values float32 
    35818 
    35819 > surface dust #9 size 50
    35820 
    35821 > show #!11 models
    35822 
    35823 > hide #!11 models
    35824 
    35825 > color #9 #c0c0c080 models
    35826 
    35827 > select add #8.10
    35828 
    35829 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    35830 
    35831 > select add #8.11
    35832 
    35833 6295 atoms, 6414 bonds, 1 pseudobond, 782 residues, 3 models selected 
    35834 
    35835 > select add #8.12
    35836 
    35837 7487 atoms, 7632 bonds, 1 pseudobond, 931 residues, 4 models selected 
    35838 
    35839 > select add #8.13
    35840 
    35841 12590 atoms, 12828 bonds, 2 pseudobonds, 1564 residues, 6 models selected 
    35842 
    35843 > select add #8.16
    35844 
    35845 17661 atoms, 17984 bonds, 2 pseudobonds, 2185 residues, 7 models selected 
    35846 
    35847 > select add #8.6
    35848 
    35849 18896 atoms, 19225 bonds, 2 pseudobonds, 2340 residues, 8 models selected 
    35850 
    35851 > select subtract #8.6
    35852 
    35853 17661 atoms, 17984 bonds, 2 pseudobonds, 2185 residues, 7 models selected 
    35854 
    35855 > show #8.6 models
    35856 
    35857 > show #8.5 models
    35858 
    35859 > select subtract #8.10
    35860 
    35861 16469 atoms, 16766 bonds, 2 pseudobonds, 2036 residues, 6 models selected 
    35862 
    35863 > select subtract #8.11
    35864 
    35865 11366 atoms, 11570 bonds, 1 pseudobond, 1403 residues, 4 models selected 
    35866 
    35867 > select subtract #8.12
    35868 
    35869 10174 atoms, 10352 bonds, 1 pseudobond, 1254 residues, 3 models selected 
    35870 
    35871 > select subtract #8.13
    35872 
    35873 5071 atoms, 5156 bonds, 621 residues, 1 model selected 
    35874 
    35875 > select subtract #8.16
    35876 
    35877 Nothing selected 
    35878 Drag select of 155 residues, 9 Single-Spoke-ring.mrc gaussian 
    35879 
    35880 > select subtract #9
    35881 
    35882 1186 atoms, 155 residues, 2 models selected 
    35883 
    35884 > select add #8.6/BY:79
    35885 
    35886 1194 atoms, 7 bonds, 156 residues, 2 models selected 
    35887 
    35888 > select add #8.6/BY:78
    35889 
    35890 1203 atoms, 15 bonds, 157 residues, 2 models selected 
    35891 
    35892 > select add #8.6/BY:77
    35893 
    35894 1212 atoms, 23 bonds, 158 residues, 2 models selected 
    35895 
    35896 > select add #8.6/BY:76
    35897 
    35898 1221 atoms, 31 bonds, 159 residues, 2 models selected 
    35899 
    35900 > select add #8.5/BX:76
    35901 
    35902 1230 atoms, 39 bonds, 160 residues, 2 models selected 
    35903 
    35904 > select add #8.5/BX:75
    35905 
    35906 1239 atoms, 47 bonds, 161 residues, 2 models selected 
    35907 
    35908 > hide sel cartoons
    35909 
    35910 > view orient
    35911 
    35912 > hide #!9 models
    35913 
    35914 > select add #8.6
    35915 
    35916 1859 atoms, 1257 bonds, 236 residues, 2 models selected 
    35917 
    35918 > select subtract #8.6
    35919 
    35920 624 atoms, 16 bonds, 81 residues, 1 model selected 
    35921 
    35922 > select add #8.5
    35923 
    35924 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    35925 
    35926 > select subtract #8.5
    35927 
    35928 Nothing selected 
    35929 Drag select of 2334 residues, 2 pseudobonds 
    35930 
    35931 The cached device pixel ratio value was stale on window expose. Please file a
    35932 QTBUG which explains how to reproduce. 
    35933 
    35934 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/For-
    35935 > Support_figures/Single-unit_Spokes-ring.pdb selectedOnly true
    35936 
    35937 > open /Users/shoichi/Desktop/Resegment-Fixed/Part3/For-
    35938 > Support_figures/Single-unit_Spokes-ring.pdb
    35939 
    35940 Chain information for Single-unit_Spokes-ring.pdb 
    35941 --- 
    35942 Chain | Description 
    35943 10.1/BX | No description available 
    35944 10.2/BY | No description available 
    35945 10.3/j 10.5/l | No description available 
    35946 10.4/k 10.6/m | No description available 
    35947 10.7/s | No description available 
    35948  
    35949 
    35950 > select clear
    35951 
    35952 > hide #!8 models
    35953 
    35954 > hide #10.1 models
    35955 
    35956 > show #10.1 models
    35957 
    35958 > show #8.1 models
    35959 
    35960 > hide #8.1 models
    35961 
    35962 > show #8.2 models
    35963 
    35964 > show #8.1 models
    35965 
    35966 > show #8.7 models
    35967 
    35968 > select add #8.7
    35969 
    35970 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    35971 
    35972 > select subtract #8.7
    35973 
    35974 Nothing selected 
    35975 
    35976 > select add #8.6
    35977 
    35978 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    35979 
    35980 > select add #8.5
    35981 
    35982 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    35983 
    35984 > show sel cartoons
    35985 
    35986 > select clear
    35987 
    35988 > select add #10.1
    35989 
    35990 611 atoms, 615 bonds, 74 residues, 1 model selected 
    35991 
    35992 > color sel orchid
    35993 
    35994 > select subtract #10.1
    35995 
    35996 Nothing selected 
    35997 
    35998 > select add #10.2
    35999 
    36000 620 atoms, 624 bonds, 75 residues, 1 model selected 
    36001 
    36002 > color sel #e9cdeaff
    36003 
    36004 > select clear
    36005 
    36006 > hide #8.1 models
    36007 
    36008 > hide #8.2 models
    36009 
    36010 > show #8.1 models
    36011 
    36012 > show #8.2 models
    36013 
    36014 > show #8.3 models
    36015 
    36016 > show #8.4 models
    36017 
    36018 > show #!8.8 models
    36019 
    36020 > show #!8.9 models
    36021 
    36022 > show #8.14 models
    36023 
    36024 > show #8.15 models
    36025 
    36026 > hide #!8 models
    36027 
    36028 > hide #10.3 models
    36029 
    36030 > show #10.3 models
    36031 
    36032 > hide #10.3 models
    36033 
    36034 > show #10.3 models
    36035 
    36036 > select add #10.3
    36037 
    36038 1192 atoms, 1218 bonds, 149 residues, 1 model selected 
    36039 
    36040 > hide #!10.4 models
    36041 
    36042 > show #!10.4 models
    36043 
    36044 > hide #10.5 models
    36045 
    36046 > show #10.5 models
    36047 
    36048 > select add #10.5
    36049 
    36050 2384 atoms, 2436 bonds, 298 residues, 2 models selected 
    36051 
    36052 > hide #!10.6 models
    36053 
    36054 > show #!10.6 models
    36055 
    36056 > hide #10.7 models
    36057 
    36058 > show #10.7 models
    36059 
    36060 > select add #10.7
    36061 
    36062 7455 atoms, 7592 bonds, 919 residues, 3 models selected 
    36063 
    36064 > color sel #ca4949ff models
    36065 
    36066 > select clear
    36067 
    36068 > select add #10.4
    36069 
    36070 5103 atoms, 5196 bonds, 1 pseudobond, 633 residues, 2 models selected 
    36071 
    36072 > select add #10.6
    36073 
    36074 10206 atoms, 10392 bonds, 2 pseudobonds, 1266 residues, 4 models selected 
    36075 
    36076 > color sel magenta models
    36077 
    36078 > select clear
    36079 
    36080 > combine 10
    36081 
    36082 Expected a keyword 
    36083 
    36084 > combine #10
    36085 
    36086 > hide #!10 models
    36087 
    36088 > hide #!13 models
    36089 
    36090 > show #!13 models
    36091 
    36092 > show #!9 models
    36093 
    36094 > ui tool show "Fit in Map"
    36095 
    36096 The cached device pixel ratio value was stale on window expose. Please file a
    36097 QTBUG which explains how to reproduce. 
    36098 
    36099 [Repeated 1 time(s)]
    36100 
    36101 > fitmap #13 inMap #9
    36102 
    36103 Fit molecule combination (#13) to map Single-Spoke-ring.mrc gaussian (#9)
    36104 using 18892 atoms 
    36105 average map value = 0.0339, steps = 60 
    36106 shifted from previous position = 1.78 
    36107 rotated from previous position = 1.69 degrees 
    36108 atoms outside contour = 1156, contour level = 0.0003869 
    36109  
    36110 Position of combination (#13) relative to Single-Spoke-ring.mrc gaussian (#9)
    36111 coordinates: 
    36112 Matrix rotation and translation 
    36113 0.99956660 0.01511691 -0.02526044 3.09823887 
    36114 -0.01511434 0.99988573 0.00029272 2.17927743 
    36115 0.02526197 0.00008920 0.99968086 -5.77931779 
    36116 Axis -0.00345672 -0.85810305 -0.51346588 
    36117 Axis point 208.19316381 0.00000000 119.22852819 
    36118 Rotation angle (degrees) 1.68694142 
    36119 Shift along axis 1.08672813 
    36120  
    36121 
    36122 > fitmap #13 inMap #9
    36123 
    36124 Fit molecule combination (#13) to map Single-Spoke-ring.mrc gaussian (#9)
    36125 using 18892 atoms 
    36126 average map value = 0.0339, steps = 44 
    36127 shifted from previous position = 0.00686 
    36128 rotated from previous position = 0.0119 degrees 
    36129 atoms outside contour = 1154, contour level = 0.0003869 
    36130  
    36131 Position of combination (#13) relative to Single-Spoke-ring.mrc gaussian (#9)
    36132 coordinates: 
    36133 Matrix rotation and translation 
    36134 0.99956331 0.01532254 -0.02526676 3.05663171 
    36135 -0.01531905 0.99988260 0.00033191 2.21688085 
    36136 0.02526888 0.00005530 0.99968069 -5.77385238 
    36137 Axis -0.00468041 -0.85508399 -0.51846839 
    36138 Axis point 207.74836454 0.00000000 117.58460531 
    36139 Rotation angle (degrees) 1.69334263 
    36140 Shift along axis 1.08363436 
    36141  
    36142 Opened combination map 5 as #15, grid size 173,162,66, pixel 1.67, shown at
    36143 level 0.0975, step 1, values float32 
    36144 
    36145 > fitmap #13 inMap #9 resolution 5 metric correlation
    36146 
    36147 Fit map combination map 5 in map Single-Spoke-ring.mrc gaussian using 71823
    36148 points 
    36149 correlation = 0.7843, correlation about mean = 0.1189, overlap = 868.8 
    36150 steps = 48, shift = 0.288, angle = 0.168 degrees 
    36151  
    36152 Position of combination map 5 (#15) relative to Single-Spoke-ring.mrc gaussian
    36153 (#9) coordinates: 
    36154 Matrix rotation and translation 
    36155 0.99961902 0.01382237 -0.02389061 2.89655351 
    36156 -0.01376884 0.99990232 0.00240390 1.26702597 
    36157 0.02392150 -0.00207404 0.99971169 -4.75618228 
    36158 Axis -0.08085330 -0.86329261 -0.49818533 
    36159 Axis point 178.60491525 0.00000000 121.91874732 
    36160 Rotation angle (degrees) 1.58682134 
    36161 Shift along axis 1.04145014 
    36162  
    36163 Average map value = 0.03389 for 18892 atoms, 1131 outside contour 
    36164 
    36165 > hide #!9 models
    36166 
    36167 > show #!15 models
    36168 
    36169 > hide #!15 models
    36170 
    36171 > show #!9 models
    36172 
    36173 > close #15
    36174 
    36175 Opened combination map 10 as #15, grid size 96,90,42, pixel 3.33, shown at
    36176 level 0.0635, step 1, values float32 
    36177 
    36178 > fitmap #13 inMap #9 resolution 10 metric correlation
    36179 
    36180 Fit map combination map 10 in map Single-Spoke-ring.mrc gaussian using 12829
    36181 points 
    36182 correlation = 0.8633, correlation about mean = 0.5048, overlap = 106.4 
    36183 steps = 60, shift = 0.0929, angle = 0.175 degrees 
    36184  
    36185 Position of combination map 10 (#15) relative to Single-Spoke-ring.mrc
    36186 gaussian (#9) coordinates: 
    36187 Matrix rotation and translation 
    36188 0.99967548 0.01451755 -0.02093243 2.06394488 
    36189 -0.01446526 0.99989187 0.00264722 1.42614829 
    36190 0.02096860 -0.00234357 0.99977739 -4.01679677 
    36191 Axis -0.09749199 -0.81850955 -0.56616025 
    36192 Axis point 168.17434649 0.00000000 100.21099695 
    36193 Rotation angle (degrees) 1.46669925 
    36194 Shift along axis 0.90561658 
    36195  
    36196 Average map value = 0.03388 for 18892 atoms, 1151 outside contour 
    36197 
    36198 > show #!15 models
    36199 
    36200 > hide #!9 models
    36201 
    36202 > show #!9 models
    36203 
    36204 > hide #!9 models
    36205 
    36206 > hide #!15 models
    36207 
    36208 > show #!9 models
    36209 
    36210 > save /Users/shoichi/Desktop/SupFigXa_07112025.png supersample 2
    36211 > transparentBackground true
    36212 
    36213 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Fitting_PflABY-
    36214 > JMB_07112025.cxs includeMaps true
    36215 
    36216 > turn x 90
    36217 
    36218 > turn x -90
    36219 
    36220 [Repeated 1 time(s)]
    36221 
    36222 > turn x 90
    36223 
    36224 > turn x -30
    36225 
    36226 > turn x 30
    36227 
    36228 > turn x 60
    36229 
    36230 > turn x -60
    36231 
    36232 [Repeated 1 time(s)]
    36233 
    36234 > turn x 60
    36235 
    36236 > turn x -45
    36237 
    36238 > show #!1 models
    36239 
    36240 > hide #!1 models
    36241 
    36242 > save /Users/shoichi/Desktop/Resegment-Fixed/Part3/Fitting_PflABY-
    36243 > JMB_07112025.cxs includeMaps true
    36244 
    36245 ——— End of log from Fri Jul 11 12:46:52 2025 ———
    36246 
    36247 opened ChimeraX session 
    36248 
    36249 > show #!14 models
    36250 
    36251 > hide #!14 models
    36252 
    36253 > show #!12 models
    36254 
    36255 > hide #!13 models
    36256 
    36257 > hide #!12 models
    36258 
    36259 > show #!12 models
    36260 
    36261 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    36262 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    36263 > refinment/For-Chimera-PflAB/Resegment/Resegment-Fixed/MS-ring.mrc"
    36264 
    36265 Opened MS-ring.mrc as #16, grid size 200,200,200, pixel 2.14, shown at level
    36266 0.00124, step 1, values float32 
    36267 
    36268 > hide #!16 models
    36269 
    36270 > show #!16 models
    36271 
    36272 > hide #!9 models
    36273 
    36274 > show #!9 models
    36275 
    36276 > show #!7 models
    36277 
    36278 > hide #!7 models
    36279 
    36280 > show #!11 models
    36281 
    36282 > volume gaussian #16 sDev 2
    36283 
    36284 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    36285 at step 1, values float32 
    36286 
    36287 > close #17
    36288 
    36289 > volume gaussian #16 sDev 4
    36290 
    36291 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    36292 at step 1, values float32 
    36293 
    36294 > close #17
    36295 
    36296 > volume gaussian #16 sDev 3
    36297 
    36298 Opened MS-ring.mrc gaussian as #17, grid size 200,200,200, pixel 2.14, shown
    36299 at step 1, values float32 
    36300 
    36301 > color #17 #c0c0c080 models
    36302 
    36303 > view orient
    36304 
    36305 > save /Users/shoichi/Desktop/3XFlgY_PflAB_07112025.png supersample 2
    36306 > transparentBackground true
    36307 
    36308 > hide #!9 models
    36309 
    36310 > show #!9 models
    36311 
    36312 > hide #!9 models
    36313 
    36314 > show #!9 models
    36315 
    36316 > hide #!9 models
    36317 
    36318 > surface dust #11 size 21.4
    36319 
    36320 > surface dust #17 size 21.4
    36321 
    36322 > save /Users/shoichi/Desktop/3XFlgY_PflAB_07112025.png supersample 2
    36323 > transparentBackground true
    36324 
    36325 > hide #!11 models
    36326 
    36327 > hide #!12 models
    36328 
    36329 > show #!12 models
    36330 
    36331 > show #!13 models
    36332 
    36333 > hide #!13 models
    36334 
    36335 > show #!13 models
    36336 
    36337 > hide #!13 models
    36338 
    36339 > combine #12
    36340 
    36341 > hide #!12 models
    36342 
    36343 > split #18
    36344 
    36345 Split copy of combination (#18) into 16 models 
    36346 Chain information for copy of combination BN #18.1 
    36347 --- 
    36348 Chain | Description 
    36349 BN | No description available 
    36350  
    36351 Chain information for copy of combination BO #18.2 
    36352 --- 
    36353 Chain | Description 
    36354 BO | No description available 
    36355  
    36356 Chain information for copy of combination BV #18.3 
    36357 --- 
    36358 Chain | Description 
    36359 BV | No description available 
    36360  
    36361 Chain information for copy of combination BW #18.4 
    36362 --- 
    36363 Chain | Description 
    36364 BW | No description available 
    36365  
    36366 Chain information for copy of combination BX #18.5 
    36367 --- 
    36368 Chain | Description 
    36369 BX | No description available 
    36370  
    36371 Chain information for copy of combination BY #18.6 
    36372 --- 
    36373 Chain | Description 
    36374 BY | No description available 
    36375  
    36376 Chain information for copy of combination d #18.7 
    36377 --- 
    36378 Chain | Description 
    36379 d | No description available 
    36380  
    36381 Chain information for copy of combination e #18.8 
    36382 --- 
    36383 Chain | Description 
    36384 e | No description available 
    36385  
    36386 Chain information for copy of combination i #18.9 
    36387 --- 
    36388 Chain | Description 
    36389 i | No description available 
    36390  
    36391 Chain information for copy of combination j #18.10 
    36392 --- 
    36393 Chain | Description 
    36394 j | No description available 
    36395  
    36396 Chain information for copy of combination k #18.11 
    36397 --- 
    36398 Chain | Description 
    36399 k | No description available 
    36400  
    36401 Chain information for copy of combination l #18.12 
    36402 --- 
    36403 Chain | Description 
    36404 l | No description available 
    36405  
    36406 Chain information for copy of combination m #18.13 
    36407 --- 
    36408 Chain | Description 
    36409 m | No description available 
    36410  
    36411 Chain information for copy of combination n #18.14 
    36412 --- 
    36413 Chain | Description 
    36414 n | No description available 
    36415  
    36416 Chain information for copy of combination r #18.15 
    36417 --- 
    36418 Chain | Description 
    36419 r | No description available 
    36420  
    36421 Chain information for copy of combination s #18.16 
    36422 --- 
    36423 Chain | Description 
    36424 s | No description available 
    36425  
    36426 
    36427 > hide #!17 models
    36428 
    36429 > show #!9 models
    36430 
    36431 > hide #18.1 models
    36432 
    36433 > hide #18.2 models
    36434 
    36435 > hide #18.3 models
    36436 
    36437 > hide #18.4 models
    36438 
    36439 > hide #18.7 models
    36440 
    36441 > hide #!18.8 models
    36442 
    36443 > hide #!18.9 models
    36444 
    36445 > show #!18.9 models
    36446 
    36447 > hide #!18.9 models
    36448 
    36449 > hide #18.10 models
    36450 
    36451 > show #18.10 models
    36452 
    36453 > hide #18.12 models
    36454 
    36455 > show #18.12 models
    36456 
    36457 > hide #18.14 models
    36458 
    36459 > hide #18.15 models
    36460 
    36461 Drag select of 153 residues 
    36462 
    36463 > hide sel cartoons
    36464 
    36465 > select #18.6/BY:73
    36466 
    36467 7 atoms, 6 bonds, 1 residue, 1 model selected 
    36468 
    36469 > select subtract #18.6/BY:73
    36470 
    36471 Nothing selected 
    36472 
    36473 > select add #18.6/BY:74
    36474 
    36475 9 atoms, 8 bonds, 1 residue, 1 model selected 
    36476 
    36477 > select add #18.6/BY:76
    36478 
    36479 18 atoms, 16 bonds, 2 residues, 1 model selected 
    36480 
    36481 > select add #18.6/BY:77
    36482 
    36483 27 atoms, 24 bonds, 3 residues, 1 model selected 
    36484 
    36485 > select add #18.6/BY:78
    36486 
    36487 36 atoms, 32 bonds, 4 residues, 1 model selected 
    36488 
    36489 > select add #18.6/BY:80
    36490 
    36491 44 atoms, 39 bonds, 5 residues, 1 model selected 
    36492 
    36493 > select add #18.6/BY:79
    36494 
    36495 52 atoms, 46 bonds, 6 residues, 1 model selected 
    36496 
    36497 > select add #18.6/BY:81
    36498 
    36499 60 atoms, 53 bonds, 7 residues, 1 model selected 
    36500 
    36501 > select add #18.5/BX:75
    36502 
    36503 69 atoms, 61 bonds, 8 residues, 2 models selected 
    36504 
    36505 > select add #18.6/BY:75
    36506 
    36507 78 atoms, 69 bonds, 9 residues, 2 models selected 
    36508 
    36509 > select add #18.5/BX:76
    36510 
    36511 87 atoms, 77 bonds, 10 residues, 2 models selected 
    36512 
    36513 > select add #18.5/BX:74
    36514 
    36515 96 atoms, 85 bonds, 11 residues, 2 models selected 
    36516 
    36517 > select add #18.5/BX:73
    36518 
    36519 103 atoms, 91 bonds, 12 residues, 2 models selected 
    36520 
    36521 > select add #18.5/BX:72
    36522 
    36523 111 atoms, 98 bonds, 13 residues, 2 models selected 
    36524 
    36525 > hide sel cartoons
    36526 
    36527 > view orient
    36528 
    36529 > select up
    36530 
    36531 1592 atoms, 1602 bonds, 192 residues, 2 models selected 
    36532 
    36533 > select up
    36534 
    36535 2470 atoms, 2482 bonds, 310 residues, 2 models selected 
    36536 
    36537 > select down
    36538 
    36539 1592 atoms, 1602 bonds, 192 residues, 2 models selected 
    36540 
    36541 > select down
    36542 
    36543 111 atoms, 98 bonds, 13 residues, 2 models selected 
    36544 
    36545 > undo
    36546 
    36547 [Repeated 3 time(s)]
    36548 
    36549 > show #!12 models
    36550 
    36551 > hide #!12 models
    36552 
    36553 > show #!12 models
    36554 
    36555 > hide #!12 models
    36556 
    36557 > save /Users/shoichi/Desktop/1XFlgY_PflAB_07112025.png supersample 2
    36558 > transparentBackground true
    36559 
    36560 > hide #!18 models
    36561 
    36562 > select add #18
    36563 
    36564 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 21 models selected 
    36565 
    36566 > hide #!9 models
    36567 
    36568 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    36569 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    36570 > refinment/For-Chimera-PflAB/Resegment/Part1/PflC.mrc"
    36571 
    36572 Opened PflC.mrc as #19, grid size 200,200,200, pixel 2.14, shown at level
    36573 0.0306, step 1, values float32 
    36574 
    36575 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    36576 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    36577 > refinment/For-Chimera-PflAB/Resegment/Part1/PflD.mrc"
    36578 
    36579 Opened PflD.mrc as #20, grid size 200,200,200, pixel 2.14, shown at level
    36580 0.00101, step 1, values float32 
    36581 
    36582 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    36583 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    36584 > refinment/For-Chimera-PflAB/Resegment/Part3/Cages2.mrc"
    36585 
    36586 Opened Cages2.mrc as #21, grid size 200,200,200, pixel 2.14, shown at level
    36587 0.00248, step 1, values float32 
    36588 
    36589 > volume #21 level 0.001871
    36590 
    36591 > volume #19 level 0.007524
    36592 
    36593 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    36594 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    36595 > refinment/For-Chimera-PflAB/Rev-CJFlgYPlfAB-msk-2.1A.mrc"
    36596 
    36597 Opened Rev-CJFlgYPlfAB-msk-2.1A.mrc as #22, grid size 200,200,200, pixel 2.14,
    36598 shown at level 0.047, step 1, values float32 
    36599 
    36600 > volume #22 level 0.00187
    36601 
    36602 > hide #!22 models
    36603 
    36604 > select subtract #18
    36605 
    36606 Nothing selected 
    36607 
    36608 > show #!11 models
    36609 
    36610 > show #!4 models
    36611 
    36612 > hide #!4 models
    36613 
    36614 > show #!5 models
    36615 
    36616 > show #5.63 models
    36617 
    36618 > hide #5.63 models
    36619 
    36620 > show #5.63 models
    36621 
    36622 > hide #5.63 models
    36623 
    36624 > show #5.146 models
    36625 
    36626 > hide #5.146 models
    36627 
    36628 > hide #!19 models
    36629 
    36630 > hide #!20 models
    36631 
    36632 > show #!20 models
    36633 
    36634 > hide #!20 models
    36635 
    36636 > hide #!21 models
    36637 
    36638 > show #5.149 models
    36639 
    36640 > hide #5.149 models
    36641 
    36642 > show #5.146 models
    36643 
    36644 > hide #5.146 models
    36645 
    36646 > show #5.39 models
    36647 
    36648 > hide #5.39 models
    36649 
    36650 > show #5.2 models
    36651 
    36652 > hide #5.2 models
    36653 
    36654 > show #!4 models
    36655 
    36656 > hide #!4 models
    36657 
    36658 > show #!3 models
    36659 
    36660 > hide #!3 models
    36661 
    36662 > show #!3 models
    36663 
    36664 > combine #3
    36665 
    36666 > hide #!5 models
    36667 
    36668 > split #23
    36669 
    36670 Split copy of combination (#23) into 149 models 
    36671 Chain information for copy of combination 0 #23.1 
    36672 --- 
    36673 Chain | Description 
    36674 0 | No description available 
    36675  
    36676 Chain information for copy of combination 1 #23.2 
    36677 --- 
    36678 Chain | Description 
    36679 1 | No description available 
    36680  
    36681 Chain information for copy of combination 2 #23.3 
    36682 --- 
    36683 Chain | Description 
    36684 2 | No description available 
    36685  
    36686 Chain information for copy of combination 3 #23.4 
    36687 --- 
    36688 Chain | Description 
    36689 3 | No description available 
    36690  
    36691 Chain information for copy of combination 4 #23.5 
    36692 --- 
    36693 Chain | Description 
    36694 4 | No description available 
    36695  
    36696 Chain information for copy of combination 5 #23.6 
    36697 --- 
    36698 Chain | Description 
    36699 5 | No description available 
    36700  
    36701 Chain information for copy of combination 6 #23.7 
    36702 --- 
    36703 Chain | Description 
    36704 6 | No description available 
    36705  
    36706 Chain information for copy of combination 7 #23.8 
    36707 --- 
    36708 Chain | Description 
    36709 7 | No description available 
    36710  
    36711 Chain information for copy of combination 8 #23.9 
    36712 --- 
    36713 Chain | Description 
    36714 8 | No description available 
    36715  
    36716 Chain information for copy of combination 9 #23.10 
    36717 --- 
    36718 Chain | Description 
    36719 9 | No description available 
    36720  
    36721 Chain information for copy of combination A #23.11 
    36722 --- 
    36723 Chain | Description 
    36724 A | No description available 
    36725  
    36726 Chain information for copy of combination A0 #23.12 
    36727 --- 
    36728 Chain | Description 
    36729 A0 | No description available 
    36730  
    36731 Chain information for copy of combination A1 #23.13 
    36732 --- 
    36733 Chain | Description 
    36734 A1 | No description available 
    36735  
    36736 Chain information for copy of combination A2 #23.14 
    36737 --- 
    36738 Chain | Description 
    36739 A2 | No description available 
    36740  
    36741 Chain information for copy of combination A3 #23.15 
    36742 --- 
    36743 Chain | Description 
    36744 A3 | No description available 
    36745  
    36746 Chain information for copy of combination A4 #23.16 
    36747 --- 
    36748 Chain | Description 
    36749 A4 | No description available 
    36750  
    36751 Chain information for copy of combination A5 #23.17 
    36752 --- 
    36753 Chain | Description 
    36754 A5 | No description available 
    36755  
    36756 Chain information for copy of combination A6 #23.18 
    36757 --- 
    36758 Chain | Description 
    36759 A6 | No description available 
    36760  
    36761 Chain information for copy of combination A7 #23.19 
    36762 --- 
    36763 Chain | Description 
    36764 A7 | No description available 
    36765  
    36766 Chain information for copy of combination A8 #23.20 
    36767 --- 
    36768 Chain | Description 
    36769 A8 | No description available 
    36770  
    36771 Chain information for copy of combination A9 #23.21 
    36772 --- 
    36773 Chain | Description 
    36774 A9 | No description available 
    36775  
    36776 Chain information for copy of combination AA #23.22 
    36777 --- 
    36778 Chain | Description 
    36779 AA | No description available 
    36780  
    36781 Chain information for copy of combination AB #23.23 
    36782 --- 
    36783 Chain | Description 
    36784 AB | No description available 
    36785  
    36786 Chain information for copy of combination AC #23.24 
    36787 --- 
    36788 Chain | Description 
    36789 AC | No description available 
    36790  
    36791 Chain information for copy of combination AD #23.25 
    36792 --- 
    36793 Chain | Description 
    36794 AD | No description available 
    36795  
    36796 Chain information for copy of combination AE #23.26 
    36797 --- 
    36798 Chain | Description 
    36799 AE | No description available 
    36800  
    36801 Chain information for copy of combination AF #23.27 
    36802 --- 
    36803 Chain | Description 
    36804 AF | No description available 
    36805  
    36806 Chain information for copy of combination AG #23.28 
    36807 --- 
    36808 Chain | Description 
    36809 AG | No description available 
    36810  
    36811 Chain information for copy of combination AH #23.29 
    36812 --- 
    36813 Chain | Description 
    36814 AH | No description available 
    36815  
    36816 Chain information for copy of combination AI #23.30 
    36817 --- 
    36818 Chain | Description 
    36819 AI | No description available 
    36820  
    36821 Chain information for copy of combination AJ #23.31 
    36822 --- 
    36823 Chain | Description 
    36824 AJ | No description available 
    36825  
    36826 Chain information for copy of combination AK #23.32 
    36827 --- 
    36828 Chain | Description 
    36829 AK | No description available 
    36830  
    36831 Chain information for copy of combination AL #23.33 
    36832 --- 
    36833 Chain | Description 
    36834 AL | No description available 
    36835  
    36836 Chain information for copy of combination AM #23.34 
    36837 --- 
    36838 Chain | Description 
    36839 AM | No description available 
    36840  
    36841 Chain information for copy of combination AN #23.35 
    36842 --- 
    36843 Chain | Description 
    36844 AN | No description available 
    36845  
    36846 Chain information for copy of combination AO #23.36 
    36847 --- 
    36848 Chain | Description 
    36849 AO | No description available 
    36850  
    36851 Chain information for copy of combination AP #23.37 
    36852 --- 
    36853 Chain | Description 
    36854 AP | No description available 
    36855  
    36856 Chain information for copy of combination AQ #23.38 
    36857 --- 
    36858 Chain | Description 
    36859 AQ | No description available 
    36860  
    36861 Chain information for copy of combination AR #23.39 
    36862 --- 
    36863 Chain | Description 
    36864 AR | No description available 
    36865  
    36866 Chain information for copy of combination AS #23.40 
    36867 --- 
    36868 Chain | Description 
    36869 AS | No description available 
    36870  
    36871 Chain information for copy of combination AT #23.41 
    36872 --- 
    36873 Chain | Description 
    36874 AT | No description available 
    36875  
    36876 Chain information for copy of combination AU #23.42 
    36877 --- 
    36878 Chain | Description 
    36879 AU | No description available 
    36880  
    36881 Chain information for copy of combination AV #23.43 
    36882 --- 
    36883 Chain | Description 
    36884 AV | No description available 
    36885  
    36886 Chain information for copy of combination AW #23.44 
    36887 --- 
    36888 Chain | Description 
    36889 AW | No description available 
    36890  
    36891 Chain information for copy of combination AX #23.45 
    36892 --- 
    36893 Chain | Description 
    36894 AX | No description available 
    36895  
    36896 Chain information for copy of combination AY #23.46 
    36897 --- 
    36898 Chain | Description 
    36899 AY | No description available 
    36900  
    36901 Chain information for copy of combination AZ #23.47 
    36902 --- 
    36903 Chain | Description 
    36904 AZ | No description available 
    36905  
    36906 Chain information for copy of combination Aa #23.48 
    36907 --- 
    36908 Chain | Description 
    36909 Aa | No description available 
    36910  
    36911 Chain information for copy of combination Ab #23.49 
    36912 --- 
    36913 Chain | Description 
    36914 Ab | No description available 
    36915  
    36916 Chain information for copy of combination Ac #23.50 
    36917 --- 
    36918 Chain | Description 
    36919 Ac | No description available 
    36920  
    36921 Chain information for copy of combination Ad #23.51 
    36922 --- 
    36923 Chain | Description 
    36924 Ad | No description available 
    36925  
    36926 Chain information for copy of combination Ae #23.52 
    36927 --- 
    36928 Chain | Description 
    36929 Ae | No description available 
    36930  
    36931 Chain information for copy of combination Af #23.53 
    36932 --- 
    36933 Chain | Description 
    36934 Af | No description available 
    36935  
    36936 Chain information for copy of combination Ag #23.54 
    36937 --- 
    36938 Chain | Description 
    36939 Ag | No description available 
    36940  
    36941 Chain information for copy of combination Ah #23.55 
    36942 --- 
    36943 Chain | Description 
    36944 Ah | No description available 
    36945  
    36946 Chain information for copy of combination Ai #23.56 
    36947 --- 
    36948 Chain | Description 
    36949 Ai | No description available 
    36950  
    36951 Chain information for copy of combination Aj #23.57 
    36952 --- 
    36953 Chain | Description 
    36954 Aj | No description available 
    36955  
    36956 Chain information for copy of combination Ak #23.58 
    36957 --- 
    36958 Chain | Description 
    36959 Ak | No description available 
    36960  
    36961 Chain information for copy of combination Al #23.59 
    36962 --- 
    36963 Chain | Description 
    36964 Al | No description available 
    36965  
    36966 Chain information for copy of combination Am #23.60 
    36967 --- 
    36968 Chain | Description 
    36969 Am | No description available 
    36970  
    36971 Chain information for copy of combination An #23.61 
    36972 --- 
    36973 Chain | Description 
    36974 An | No description available 
    36975  
    36976 Chain information for copy of combination Ao #23.62 
    36977 --- 
    36978 Chain | Description 
    36979 Ao | No description available 
    36980  
    36981 Chain information for copy of combination Ap #23.63 
    36982 --- 
    36983 Chain | Description 
    36984 Ap | No description available 
    36985  
    36986 Chain information for copy of combination Aq #23.64 
    36987 --- 
    36988 Chain | Description 
    36989 Aq | No description available 
    36990  
    36991 Chain information for copy of combination Ar #23.65 
    36992 --- 
    36993 Chain | Description 
    36994 Ar | No description available 
    36995  
    36996 Chain information for copy of combination As #23.66 
    36997 --- 
    36998 Chain | Description 
    36999 As | No description available 
    37000  
    37001 Chain information for copy of combination At #23.67 
    37002 --- 
    37003 Chain | Description 
    37004 At | No description available 
    37005  
    37006 Chain information for copy of combination Au #23.68 
    37007 --- 
    37008 Chain | Description 
    37009 Au | No description available 
    37010  
    37011 Chain information for copy of combination Av #23.69 
    37012 --- 
    37013 Chain | Description 
    37014 Av | No description available 
    37015  
    37016 Chain information for copy of combination Aw #23.70 
    37017 --- 
    37018 Chain | Description 
    37019 Aw | No description available 
    37020  
    37021 Chain information for copy of combination Ax #23.71 
    37022 --- 
    37023 Chain | Description 
    37024 Ax | No description available 
    37025  
    37026 Chain information for copy of combination Ay #23.72 
    37027 --- 
    37028 Chain | Description 
    37029 Ay | No description available 
    37030  
    37031 Chain information for copy of combination Az #23.73 
    37032 --- 
    37033 Chain | Description 
    37034 Az | No description available 
    37035  
    37036 Chain information for copy of combination B #23.74 
    37037 --- 
    37038 Chain | Description 
    37039 B | No description available 
    37040  
    37041 Chain information for copy of combination BA #23.75 
    37042 --- 
    37043 Chain | Description 
    37044 BA | No description available 
    37045  
    37046 Chain information for copy of combination BB #23.76 
    37047 --- 
    37048 Chain | Description 
    37049 BB | No description available 
    37050  
    37051 Chain information for copy of combination BC #23.77 
    37052 --- 
    37053 Chain | Description 
    37054 BC | No description available 
    37055  
    37056 Chain information for copy of combination BD #23.78 
    37057 --- 
    37058 Chain | Description 
    37059 BD | No description available 
    37060  
    37061 Chain information for copy of combination BE #23.79 
    37062 --- 
    37063 Chain | Description 
    37064 BE | No description available 
    37065  
    37066 Chain information for copy of combination BF #23.80 
    37067 --- 
    37068 Chain | Description 
    37069 BF | No description available 
    37070  
    37071 Chain information for copy of combination BG #23.81 
    37072 --- 
    37073 Chain | Description 
    37074 BG | No description available 
    37075  
    37076 Chain information for copy of combination BH #23.82 
    37077 --- 
    37078 Chain | Description 
    37079 BH | No description available 
    37080  
    37081 Chain information for copy of combination BI #23.83 
    37082 --- 
    37083 Chain | Description 
    37084 BI | No description available 
    37085  
    37086 Chain information for copy of combination BJ #23.84 
    37087 --- 
    37088 Chain | Description 
    37089 BJ | No description available 
    37090  
    37091 Chain information for copy of combination BK #23.85 
    37092 --- 
    37093 Chain | Description 
    37094 BK | No description available 
    37095  
    37096 Chain information for copy of combination BL #23.86 
    37097 --- 
    37098 Chain | Description 
    37099 BL | No description available 
    37100  
    37101 Chain information for copy of combination BM #23.87 
    37102 --- 
    37103 Chain | Description 
    37104 BM | No description available 
    37105  
    37106 Chain information for copy of combination BN #23.88 
    37107 --- 
    37108 Chain | Description 
    37109 BN | No description available 
    37110  
    37111 Chain information for copy of combination BO #23.89 
    37112 --- 
    37113 Chain | Description 
    37114 BO | No description available 
    37115  
    37116 Chain information for copy of combination BP #23.90 
    37117 --- 
    37118 Chain | Description 
    37119 BP | No description available 
    37120  
    37121 Chain information for copy of combination BQ #23.91 
    37122 --- 
    37123 Chain | Description 
    37124 BQ | No description available 
    37125  
    37126 Chain information for copy of combination BR #23.92 
    37127 --- 
    37128 Chain | Description 
    37129 BR | No description available 
    37130  
    37131 Chain information for copy of combination BS #23.93 
    37132 --- 
    37133 Chain | Description 
    37134 BS | No description available 
    37135  
    37136 Chain information for copy of combination BT #23.94 
    37137 --- 
    37138 Chain | Description 
    37139 BT | No description available 
    37140  
    37141 Chain information for copy of combination BU #23.95 
    37142 --- 
    37143 Chain | Description 
    37144 BU | No description available 
    37145  
    37146 Chain information for copy of combination BV #23.96 
    37147 --- 
    37148 Chain | Description 
    37149 BV | No description available 
    37150  
    37151 Chain information for copy of combination BW #23.97 
    37152 --- 
    37153 Chain | Description 
    37154 BW | No description available 
    37155  
    37156 Chain information for copy of combination BX #23.98 
    37157 --- 
    37158 Chain | Description 
    37159 BX | No description available 
    37160  
    37161 Chain information for copy of combination BY #23.99 
    37162 --- 
    37163 Chain | Description 
    37164 BY | No description available 
    37165  
    37166 Chain information for copy of combination C #23.100 
    37167 --- 
    37168 Chain | Description 
    37169 C | No description available 
    37170  
    37171 Chain information for copy of combination D #23.101 
    37172 --- 
    37173 Chain | Description 
    37174 D | No description available 
    37175  
    37176 Chain information for copy of combination E #23.102 
    37177 --- 
    37178 Chain | Description 
    37179 E | No description available 
    37180  
    37181 Chain information for copy of combination F #23.103 
    37182 --- 
    37183 Chain | Description 
    37184 F | No description available 
    37185  
    37186 Chain information for copy of combination G #23.104 
    37187 --- 
    37188 Chain | Description 
    37189 G | No description available 
    37190  
    37191 Chain information for copy of combination H #23.105 
    37192 --- 
    37193 Chain | Description 
    37194 H | No description available 
    37195  
    37196 Chain information for copy of combination I #23.106 
    37197 --- 
    37198 Chain | Description 
    37199 I | No description available 
    37200  
    37201 Chain information for copy of combination J #23.107 
    37202 --- 
    37203 Chain | Description 
    37204 J | No description available 
    37205  
    37206 Chain information for copy of combination K #23.108 
    37207 --- 
    37208 Chain | Description 
    37209 K | No description available 
    37210  
    37211 Chain information for copy of combination L #23.109 
    37212 --- 
    37213 Chain | Description 
    37214 L | No description available 
    37215  
    37216 Chain information for copy of combination M #23.110 
    37217 --- 
    37218 Chain | Description 
    37219 M | No description available 
    37220  
    37221 Chain information for copy of combination N #23.111 
    37222 --- 
    37223 Chain | Description 
    37224 N | No description available 
    37225  
    37226 Chain information for copy of combination O #23.112 
    37227 --- 
    37228 Chain | Description 
    37229 O | No description available 
    37230  
    37231 Chain information for copy of combination P #23.113 
    37232 --- 
    37233 Chain | Description 
    37234 P | No description available 
    37235  
    37236 Chain information for copy of combination Q #23.114 
    37237 --- 
    37238 Chain | Description 
    37239 Q | No description available 
    37240  
    37241 Chain information for copy of combination R #23.115 
    37242 --- 
    37243 Chain | Description 
    37244 R | No description available 
    37245  
    37246 Chain information for copy of combination S #23.116 
    37247 --- 
    37248 Chain | Description 
    37249 S | No description available 
    37250  
    37251 Chain information for copy of combination T #23.117 
    37252 --- 
    37253 Chain | Description 
    37254 T | No description available 
    37255  
    37256 Chain information for copy of combination U #23.118 
    37257 --- 
    37258 Chain | Description 
    37259 U | No description available 
    37260  
    37261 Chain information for copy of combination V #23.119 
    37262 --- 
    37263 Chain | Description 
    37264 V | No description available 
    37265  
    37266 Chain information for copy of combination W #23.120 
    37267 --- 
    37268 Chain | Description 
    37269 W | No description available 
    37270  
    37271 Chain information for copy of combination X #23.121 
    37272 --- 
    37273 Chain | Description 
    37274 X | No description available 
    37275  
    37276 Chain information for copy of combination Y #23.122 
    37277 --- 
    37278 Chain | Description 
    37279 Y | No description available 
    37280  
    37281 Chain information for copy of combination Z #23.123 
    37282 --- 
    37283 Chain | Description 
    37284 Z | No description available 
    37285  
    37286 Chain information for copy of combination a #23.124 
    37287 --- 
    37288 Chain | Description 
    37289 a | No description available 
    37290  
    37291 Chain information for copy of combination b #23.125 
    37292 --- 
    37293 Chain | Description 
    37294 b | No description available 
    37295  
    37296 Chain information for copy of combination c #23.126 
    37297 --- 
    37298 Chain | Description 
    37299 c | No description available 
    37300  
    37301 Chain information for copy of combination d #23.127 
    37302 --- 
    37303 Chain | Description 
    37304 d | No description available 
    37305  
    37306 Chain information for copy of combination e #23.128 
    37307 --- 
    37308 Chain | Description 
    37309 e | No description available 
    37310  
    37311 Chain information for copy of combination f #23.129 
    37312 --- 
    37313 Chain | Description 
    37314 f | No description available 
    37315  
    37316 Chain information for copy of combination g #23.130 
    37317 --- 
    37318 Chain | Description 
    37319 g | No description available 
    37320  
    37321 Chain information for copy of combination h #23.131 
    37322 --- 
    37323 Chain | Description 
    37324 h | No description available 
    37325  
    37326 Chain information for copy of combination i #23.132 
    37327 --- 
    37328 Chain | Description 
    37329 i | No description available 
    37330  
    37331 Chain information for copy of combination j #23.133 
    37332 --- 
    37333 Chain | Description 
    37334 j | No description available 
    37335  
    37336 Chain information for copy of combination k #23.134 
    37337 --- 
    37338 Chain | Description 
    37339 k | No description available 
    37340  
    37341 Chain information for copy of combination l #23.135 
    37342 --- 
    37343 Chain | Description 
    37344 l | No description available 
    37345  
    37346 Chain information for copy of combination m #23.136 
    37347 --- 
    37348 Chain | Description 
    37349 m | No description available 
    37350  
    37351 Chain information for copy of combination n #23.137 
    37352 --- 
    37353 Chain | Description 
    37354 n | No description available 
    37355  
    37356 Chain information for copy of combination o #23.138 
    37357 --- 
    37358 Chain | Description 
    37359 o | No description available 
    37360  
    37361 Chain information for copy of combination p #23.139 
    37362 --- 
    37363 Chain | Description 
    37364 p | No description available 
    37365  
    37366 Chain information for copy of combination q #23.140 
    37367 --- 
    37368 Chain | Description 
    37369 q | No description available 
    37370  
    37371 Chain information for copy of combination r #23.141 
    37372 --- 
    37373 Chain | Description 
    37374 r | No description available 
    37375  
    37376 Chain information for copy of combination s #23.142 
    37377 --- 
    37378 Chain | Description 
    37379 s | No description available 
    37380  
    37381 Chain information for copy of combination t #23.143 
    37382 --- 
    37383 Chain | Description 
    37384 t | No description available 
    37385  
    37386 Chain information for copy of combination u #23.144 
    37387 --- 
    37388 Chain | Description 
    37389 u | No description available 
    37390  
    37391 Chain information for copy of combination v #23.145 
    37392 --- 
    37393 Chain | Description 
    37394 v | No description available 
    37395  
    37396 Chain information for copy of combination w #23.146 
    37397 --- 
    37398 Chain | Description 
    37399 w | No description available 
    37400  
    37401 Chain information for copy of combination x #23.147 
    37402 --- 
    37403 Chain | Description 
    37404 x | No description available 
    37405  
    37406 Chain information for copy of combination y #23.148 
    37407 --- 
    37408 Chain | Description 
    37409 y | No description available 
    37410  
    37411 Chain information for copy of combination z #23.149 
    37412 --- 
    37413 Chain | Description 
    37414 z | No description available 
    37415  
    37416 
    37417 > hide #!11 models
    37418 
    37419 Drag select of 5684 residues 
    37420 
    37421 > hide #!23.11 models
    37422 
    37423 > show #!23.11 models
    37424 
    37425 > hide #!23.11 models
    37426 
    37427 > select add #23.11
    37428 
    37429 46803 atoms, 1562 bonds, 2 pseudobonds, 5841 residues, 28 models selected 
    37430 
    37431 > select subtract #23.11
    37432 
    37433 45261 atoms, 5652 residues, 26 models selected 
    37434 
    37435 > select add #23.11
    37436 
    37437 46803 atoms, 1562 bonds, 2 pseudobonds, 5841 residues, 28 models selected 
    37438 
    37439 > select subtract #23.11
    37440 
    37441 45261 atoms, 5652 residues, 26 models selected 
    37442 
    37443 > hide #23.15 models
    37444 
    37445 > hide #23.30 models
    37446 
    37447 > hide #23.53 models
    37448 
    37449 > hide #23.85 models
    37450 
    37451 > hide #!23.100 models
    37452 
    37453 > hide #!23.101 models
    37454 
    37455 > hide #23.102 models
    37456 
    37457 > hide #!23.103 models
    37458 
    37459 > hide #!23.104 models
    37460 
    37461 > hide #23.105 models
    37462 
    37463 > hide #!23.106 models
    37464 
    37465 > hide #!23.107 models
    37466 
    37467 > hide #23.108 models
    37468 
    37469 > hide #!23.109 models
    37470 
    37471 > hide #!23.110 models
    37472 
    37473 > hide #23.111 models
    37474 
    37475 > hide #!23.112 models
    37476 
    37477 > hide #!23.116 models
    37478 
    37479 > hide #23.117 models
    37480 
    37481 > hide #!23.118 models
    37482 
    37483 > hide #!23.119 models
    37484 
    37485 > hide #23.120 models
    37486 
    37487 > hide #!23.121 models
    37488 
    37489 > hide #23.145 models
    37490 
    37491 > select clear
    37492 
    37493 > hide #!23 models
    37494 
    37495 > show #!23 models
    37496 
    37497 > hide #!23 models
    37498 
    37499 > hide #!3 models
    37500 
    37501 > show #!23 models
    37502 
    37503 > show #!23.11 models
    37504 
    37505 > show #23.15 models
    37506 
    37507 > hide #23.15 models
    37508 
    37509 Drag select of 426 residues 
    37510 
    37511 > hide #23.2 models
    37512 
    37513 > hide #23.3 models
    37514 
    37515 > hide #23.4 models
    37516 
    37517 > hide #23.5 models
    37518 
    37519 > hide #23.6 models
    37520 
    37521 > hide #23.7 models
    37522 
    37523 > hide #23.8 models
    37524 
    37525 > hide #23.9 models
    37526 
    37527 > hide #23.23 models
    37528 
    37529 > hide #23.24 models
    37530 
    37531 > hide #23.25 models
    37532 
    37533 > hide #23.26 models
    37534 
    37535 > hide #23.27 models
    37536 
    37537 > hide #23.78 models
    37538 
    37539 > hide #23.79 models
    37540 
    37541 > hide #23.80 models
    37542 
    37543 > hide #23.81 models
    37544 
    37545 > hide #23.82 models
    37546 
    37547 > hide #23.83 models
    37548 
    37549 > hide #23.84 models
    37550 
    37551 > hide #23.86 models
    37552 
    37553 > hide #23.87 models
    37554 
    37555 > hide #23.146 models
    37556 
    37557 > hide #23.147 models
    37558 
    37559 > hide #23.148 models
    37560 
    37561 > hide #23.149 models
    37562 
    37563 Drag select of 48 residues 
    37564 
    37565 > hide #23.64 models
    37566 
    37567 > hide #23.65 models
    37568 
    37569 > hide #23.66 models
    37570 
    37571 > hide #23.67 models
    37572 
    37573 > hide #23.68 models
    37574 
    37575 > hide #23.69 models
    37576 
    37577 > hide #23.70 models
    37578 
    37579 > hide #23.71 models
    37580 
    37581 > hide #23.72 models
    37582 
    37583 > hide #23.73 models
    37584 
    37585 > hide #23.42 models
    37586 
    37587 > hide #23.43 models
    37588 
    37589 > hide #23.44 models
    37590 
    37591 > hide #23.45 models
    37592 
    37593 > hide #23.46 models
    37594 
    37595 Drag select of 49 residues 
    37596 
    37597 > hide #23.41 models
    37598 
    37599 > show #23.46 models
    37600 
    37601 > hide #23.46 models
    37602 
    37603 > hide #23.47 models
    37604 
    37605 > hide #23.48 models
    37606 
    37607 > hide #23.49 models
    37608 
    37609 > hide #23.50 models
    37610 
    37611 > hide #23.1 models
    37612 
    37613 > select clear
    37614 
    37615 Drag select of 16 residues 
    37616 
    37617 > hide #23.22 models
    37618 
    37619 > hide #23.10 models
    37620 
    37621 Drag select of 259 residues 
    37622 
    37623 > hide #23.12 models
    37624 
    37625 > hide #23.13 models
    37626 
    37627 > hide #23.14 models
    37628 
    37629 > hide #23.16 models
    37630 
    37631 > hide #23.17 models
    37632 
    37633 > hide #23.18 models
    37634 
    37635 > hide #23.19 models
    37636 
    37637 > hide #23.20 models
    37638 
    37639 > hide #23.21 models
    37640 
    37641 > hide #23.75 models
    37642 
    37643 > hide #23.76 models
    37644 
    37645 > hide #23.77 models
    37646 
    37647 Drag select of 156 residues 
    37648 
    37649 > hide #23.54 models
    37650 
    37651 > hide #23.55 models
    37652 
    37653 > hide #23.56 models
    37654 
    37655 > hide #23.57 models
    37656 
    37657 > hide #23.58 models
    37658 
    37659 > hide #23.59 models
    37660 
    37661 > hide #23.60 models
    37662 
    37663 > hide #23.61 models
    37664 
    37665 > hide #23.62 models
    37666 
    37667 > hide #23.63 models
    37668 
    37669 Drag select of 267 residues 
    37670 
    37671 > hide #23.31 models
    37672 
    37673 > hide #23.32 models
    37674 
    37675 > hide #23.33 models
    37676 
    37677 > hide #23.34 models
    37678 
    37679 > hide #23.35 models
    37680 
    37681 > hide #23.36 models
    37682 
    37683 > hide #23.37 models
    37684 
    37685 > hide #23.39 models
    37686 
    37687 > hide #23.38 models
    37688 
    37689 > hide #23.40 models
    37690 
    37691 Drag select of 7 residues 
    37692 
    37693 > select clear
    37694 
    37695 Drag select of 7 residues 
    37696 Drag select of 10 residues 
    37697 
    37698 > show #!23.116 models
    37699 
    37700 > show #23.117 models
    37701 
    37702 > show #!23.118 models
    37703 
    37704 > hide #!23.118 models
    37705 
    37706 > show #!23.118 models
    37707 
    37708 > show #!23.119 models
    37709 
    37710 > show #23.120 models
    37711 
    37712 > show #!23.121 models
    37713 
    37714 > show #23.145 models
    37715 
    37716 > hide #23.145 models
    37717 
    37718 > show #23.146 models
    37719 
    37720 > hide #23.146 models
    37721 
    37722 > show #23.149 models
    37723 
    37724 > hide #23.149 models
    37725 
    37726 > select clear
    37727 
    37728 Drag select of 284 residues 
    37729 
    37730 > show #23.75 models
    37731 
    37732 > hide #23.75 models
    37733 
    37734 > show #23.73 models
    37735 
    37736 > hide #23.73 models
    37737 
    37738 > show #23.73 models
    37739 
    37740 > hide #23.73 models
    37741 
    37742 > show #23.73 models
    37743 
    37744 > hide #23.73 models
    37745 
    37746 > show #23.72 models
    37747 
    37748 > hide #23.72 models
    37749 
    37750 > show #23.53 models
    37751 
    37752 > hide #23.53 models
    37753 
    37754 > show #23.54 models
    37755 
    37756 > hide #23.54 models
    37757 
    37758 > show #23.55 models
    37759 
    37760 > hide #23.55 models
    37761 
    37762 > show #23.57 models
    37763 
    37764 > show #23.3 models
    37765 
    37766 > hide #23.3 models
    37767 
    37768 > show #23.3 models
    37769 
    37770 > hide #23.3 models
    37771 
    37772 > select add #23
    37773 
    37774 224507 atoms, 227843 bonds, 42 pseudobonds, 26692 residues, 176 models
    37775 selected 
    37776 
    37777 > show sel &
    37778 > #23.28-29,51-52,57,74,88-99,114,117,120,127,129,131,133,135,137-144#!23.11,113,115-116,118-119,121-126,128,130,132,134,136
    37779 > cartoons
    37780 
    37781 [Repeated 1 time(s)]
    37782 
    37783 > show #23.1 models
    37784 
    37785 > show #23.2 models
    37786 
    37787 > show #23.3 models
    37788 
    37789 > show #23.4 models
    37790 
    37791 > show #23.5 models
    37792 
    37793 > select clear
    37794 
    37795 > show #23.6 models
    37796 
    37797 > show #23.7 models
    37798 
    37799 > show #23.8 models
    37800 
    37801 > show #23.9 models
    37802 
    37803 > show #23.10 models
    37804 
    37805 The cached device pixel ratio value was stale on window expose. Please file a
    37806 QTBUG which explains how to reproduce. 
    37807 
    37808 > hide #!23.11 models
    37809 
    37810 > show #!23.11 models
    37811 
    37812 > close #23.1-10
    37813 
    37814 > show #23.12 models
    37815 
    37816 > show #23.13 models
    37817 
    37818 > show #23.14 models
    37819 
    37820 > show #23.15 models
    37821 
    37822 > hide #23.15 models
    37823 
    37824 > hide #23.14 models
    37825 
    37826 > show #23.14 models
    37827 
    37828 > close #23
    37829 
    37830 > combine #3
    37831 
    37832 > split #23
    37833 
    37834 Split copy of combination (#23) into 149 models 
    37835 Chain information for copy of combination 0 #23.1 
    37836 --- 
    37837 Chain | Description 
    37838 0 | No description available 
    37839  
    37840 Chain information for copy of combination 1 #23.2 
    37841 --- 
    37842 Chain | Description 
    37843 1 | No description available 
    37844  
    37845 Chain information for copy of combination 2 #23.3 
    37846 --- 
    37847 Chain | Description 
    37848 2 | No description available 
    37849  
    37850 Chain information for copy of combination 3 #23.4 
    37851 --- 
    37852 Chain | Description 
    37853 3 | No description available 
    37854  
    37855 Chain information for copy of combination 4 #23.5 
    37856 --- 
    37857 Chain | Description 
    37858 4 | No description available 
    37859  
    37860 Chain information for copy of combination 5 #23.6 
    37861 --- 
    37862 Chain | Description 
    37863 5 | No description available 
    37864  
    37865 Chain information for copy of combination 6 #23.7 
    37866 --- 
    37867 Chain | Description 
    37868 6 | No description available 
    37869  
    37870 Chain information for copy of combination 7 #23.8 
    37871 --- 
    37872 Chain | Description 
    37873 7 | No description available 
    37874  
    37875 Chain information for copy of combination 8 #23.9 
    37876 --- 
    37877 Chain | Description 
    37878 8 | No description available 
    37879  
    37880 Chain information for copy of combination 9 #23.10 
    37881 --- 
    37882 Chain | Description 
    37883 9 | No description available 
    37884  
    37885 Chain information for copy of combination A #23.11 
    37886 --- 
    37887 Chain | Description 
    37888 A | No description available 
    37889  
    37890 Chain information for copy of combination A0 #23.12 
    37891 --- 
    37892 Chain | Description 
    37893 A0 | No description available 
    37894  
    37895 Chain information for copy of combination A1 #23.13 
    37896 --- 
    37897 Chain | Description 
    37898 A1 | No description available 
    37899  
    37900 Chain information for copy of combination A2 #23.14 
    37901 --- 
    37902 Chain | Description 
    37903 A2 | No description available 
    37904  
    37905 Chain information for copy of combination A3 #23.15 
    37906 --- 
    37907 Chain | Description 
    37908 A3 | No description available 
    37909  
    37910 Chain information for copy of combination A4 #23.16 
    37911 --- 
    37912 Chain | Description 
    37913 A4 | No description available 
    37914  
    37915 Chain information for copy of combination A5 #23.17 
    37916 --- 
    37917 Chain | Description 
    37918 A5 | No description available 
    37919  
    37920 Chain information for copy of combination A6 #23.18 
    37921 --- 
    37922 Chain | Description 
    37923 A6 | No description available 
    37924  
    37925 Chain information for copy of combination A7 #23.19 
    37926 --- 
    37927 Chain | Description 
    37928 A7 | No description available 
    37929  
    37930 Chain information for copy of combination A8 #23.20 
    37931 --- 
    37932 Chain | Description 
    37933 A8 | No description available 
    37934  
    37935 Chain information for copy of combination A9 #23.21 
    37936 --- 
    37937 Chain | Description 
    37938 A9 | No description available 
    37939  
    37940 Chain information for copy of combination AA #23.22 
    37941 --- 
    37942 Chain | Description 
    37943 AA | No description available 
    37944  
    37945 Chain information for copy of combination AB #23.23 
    37946 --- 
    37947 Chain | Description 
    37948 AB | No description available 
    37949  
    37950 Chain information for copy of combination AC #23.24 
    37951 --- 
    37952 Chain | Description 
    37953 AC | No description available 
    37954  
    37955 Chain information for copy of combination AD #23.25 
    37956 --- 
    37957 Chain | Description 
    37958 AD | No description available 
    37959  
    37960 Chain information for copy of combination AE #23.26 
    37961 --- 
    37962 Chain | Description 
    37963 AE | No description available 
    37964  
    37965 Chain information for copy of combination AF #23.27 
    37966 --- 
    37967 Chain | Description 
    37968 AF | No description available 
    37969  
    37970 Chain information for copy of combination AG #23.28 
    37971 --- 
    37972 Chain | Description 
    37973 AG | No description available 
    37974  
    37975 Chain information for copy of combination AH #23.29 
    37976 --- 
    37977 Chain | Description 
    37978 AH | No description available 
    37979  
    37980 Chain information for copy of combination AI #23.30 
    37981 --- 
    37982 Chain | Description 
    37983 AI | No description available 
    37984  
    37985 Chain information for copy of combination AJ #23.31 
    37986 --- 
    37987 Chain | Description 
    37988 AJ | No description available 
    37989  
    37990 Chain information for copy of combination AK #23.32 
    37991 --- 
    37992 Chain | Description 
    37993 AK | No description available 
    37994  
    37995 Chain information for copy of combination AL #23.33 
    37996 --- 
    37997 Chain | Description 
    37998 AL | No description available 
    37999  
    38000 Chain information for copy of combination AM #23.34 
    38001 --- 
    38002 Chain | Description 
    38003 AM | No description available 
    38004  
    38005 Chain information for copy of combination AN #23.35 
    38006 --- 
    38007 Chain | Description 
    38008 AN | No description available 
    38009  
    38010 Chain information for copy of combination AO #23.36 
    38011 --- 
    38012 Chain | Description 
    38013 AO | No description available 
    38014  
    38015 Chain information for copy of combination AP #23.37 
    38016 --- 
    38017 Chain | Description 
    38018 AP | No description available 
    38019  
    38020 Chain information for copy of combination AQ #23.38 
    38021 --- 
    38022 Chain | Description 
    38023 AQ | No description available 
    38024  
    38025 Chain information for copy of combination AR #23.39 
    38026 --- 
    38027 Chain | Description 
    38028 AR | No description available 
    38029  
    38030 Chain information for copy of combination AS #23.40 
    38031 --- 
    38032 Chain | Description 
    38033 AS | No description available 
    38034  
    38035 Chain information for copy of combination AT #23.41 
    38036 --- 
    38037 Chain | Description 
    38038 AT | No description available 
    38039  
    38040 Chain information for copy of combination AU #23.42 
    38041 --- 
    38042 Chain | Description 
    38043 AU | No description available 
    38044  
    38045 Chain information for copy of combination AV #23.43 
    38046 --- 
    38047 Chain | Description 
    38048 AV | No description available 
    38049  
    38050 Chain information for copy of combination AW #23.44 
    38051 --- 
    38052 Chain | Description 
    38053 AW | No description available 
    38054  
    38055 Chain information for copy of combination AX #23.45 
    38056 --- 
    38057 Chain | Description 
    38058 AX | No description available 
    38059  
    38060 Chain information for copy of combination AY #23.46 
    38061 --- 
    38062 Chain | Description 
    38063 AY | No description available 
    38064  
    38065 Chain information for copy of combination AZ #23.47 
    38066 --- 
    38067 Chain | Description 
    38068 AZ | No description available 
    38069  
    38070 Chain information for copy of combination Aa #23.48 
    38071 --- 
    38072 Chain | Description 
    38073 Aa | No description available 
    38074  
    38075 Chain information for copy of combination Ab #23.49 
    38076 --- 
    38077 Chain | Description 
    38078 Ab | No description available 
    38079  
    38080 Chain information for copy of combination Ac #23.50 
    38081 --- 
    38082 Chain | Description 
    38083 Ac | No description available 
    38084  
    38085 Chain information for copy of combination Ad #23.51 
    38086 --- 
    38087 Chain | Description 
    38088 Ad | No description available 
    38089  
    38090 Chain information for copy of combination Ae #23.52 
    38091 --- 
    38092 Chain | Description 
    38093 Ae | No description available 
    38094  
    38095 Chain information for copy of combination Af #23.53 
    38096 --- 
    38097 Chain | Description 
    38098 Af | No description available 
    38099  
    38100 Chain information for copy of combination Ag #23.54 
    38101 --- 
    38102 Chain | Description 
    38103 Ag | No description available 
    38104  
    38105 Chain information for copy of combination Ah #23.55 
    38106 --- 
    38107 Chain | Description 
    38108 Ah | No description available 
    38109  
    38110 Chain information for copy of combination Ai #23.56 
    38111 --- 
    38112 Chain | Description 
    38113 Ai | No description available 
    38114  
    38115 Chain information for copy of combination Aj #23.57 
    38116 --- 
    38117 Chain | Description 
    38118 Aj | No description available 
    38119  
    38120 Chain information for copy of combination Ak #23.58 
    38121 --- 
    38122 Chain | Description 
    38123 Ak | No description available 
    38124  
    38125 Chain information for copy of combination Al #23.59 
    38126 --- 
    38127 Chain | Description 
    38128 Al | No description available 
    38129  
    38130 Chain information for copy of combination Am #23.60 
    38131 --- 
    38132 Chain | Description 
    38133 Am | No description available 
    38134  
    38135 Chain information for copy of combination An #23.61 
    38136 --- 
    38137 Chain | Description 
    38138 An | No description available 
    38139  
    38140 Chain information for copy of combination Ao #23.62 
    38141 --- 
    38142 Chain | Description 
    38143 Ao | No description available 
    38144  
    38145 Chain information for copy of combination Ap #23.63 
    38146 --- 
    38147 Chain | Description 
    38148 Ap | No description available 
    38149  
    38150 Chain information for copy of combination Aq #23.64 
    38151 --- 
    38152 Chain | Description 
    38153 Aq | No description available 
    38154  
    38155 Chain information for copy of combination Ar #23.65 
    38156 --- 
    38157 Chain | Description 
    38158 Ar | No description available 
    38159  
    38160 Chain information for copy of combination As #23.66 
    38161 --- 
    38162 Chain | Description 
    38163 As | No description available 
    38164  
    38165 Chain information for copy of combination At #23.67 
    38166 --- 
    38167 Chain | Description 
    38168 At | No description available 
    38169  
    38170 Chain information for copy of combination Au #23.68 
    38171 --- 
    38172 Chain | Description 
    38173 Au | No description available 
    38174  
    38175 Chain information for copy of combination Av #23.69 
    38176 --- 
    38177 Chain | Description 
    38178 Av | No description available 
    38179  
    38180 Chain information for copy of combination Aw #23.70 
    38181 --- 
    38182 Chain | Description 
    38183 Aw | No description available 
    38184  
    38185 Chain information for copy of combination Ax #23.71 
    38186 --- 
    38187 Chain | Description 
    38188 Ax | No description available 
    38189  
    38190 Chain information for copy of combination Ay #23.72 
    38191 --- 
    38192 Chain | Description 
    38193 Ay | No description available 
    38194  
    38195 Chain information for copy of combination Az #23.73 
    38196 --- 
    38197 Chain | Description 
    38198 Az | No description available 
    38199  
    38200 Chain information for copy of combination B #23.74 
    38201 --- 
    38202 Chain | Description 
    38203 B | No description available 
    38204  
    38205 Chain information for copy of combination BA #23.75 
    38206 --- 
    38207 Chain | Description 
    38208 BA | No description available 
    38209  
    38210 Chain information for copy of combination BB #23.76 
    38211 --- 
    38212 Chain | Description 
    38213 BB | No description available 
    38214  
    38215 Chain information for copy of combination BC #23.77 
    38216 --- 
    38217 Chain | Description 
    38218 BC | No description available 
    38219  
    38220 Chain information for copy of combination BD #23.78 
    38221 --- 
    38222 Chain | Description 
    38223 BD | No description available 
    38224  
    38225 Chain information for copy of combination BE #23.79 
    38226 --- 
    38227 Chain | Description 
    38228 BE | No description available 
    38229  
    38230 Chain information for copy of combination BF #23.80 
    38231 --- 
    38232 Chain | Description 
    38233 BF | No description available 
    38234  
    38235 Chain information for copy of combination BG #23.81 
    38236 --- 
    38237 Chain | Description 
    38238 BG | No description available 
    38239  
    38240 Chain information for copy of combination BH #23.82 
    38241 --- 
    38242 Chain | Description 
    38243 BH | No description available 
    38244  
    38245 Chain information for copy of combination BI #23.83 
    38246 --- 
    38247 Chain | Description 
    38248 BI | No description available 
    38249  
    38250 Chain information for copy of combination BJ #23.84 
    38251 --- 
    38252 Chain | Description 
    38253 BJ | No description available 
    38254  
    38255 Chain information for copy of combination BK #23.85 
    38256 --- 
    38257 Chain | Description 
    38258 BK | No description available 
    38259  
    38260 Chain information for copy of combination BL #23.86 
    38261 --- 
    38262 Chain | Description 
    38263 BL | No description available 
    38264  
    38265 Chain information for copy of combination BM #23.87 
    38266 --- 
    38267 Chain | Description 
    38268 BM | No description available 
    38269  
    38270 Chain information for copy of combination BN #23.88 
    38271 --- 
    38272 Chain | Description 
    38273 BN | No description available 
    38274  
    38275 Chain information for copy of combination BO #23.89 
    38276 --- 
    38277 Chain | Description 
    38278 BO | No description available 
    38279  
    38280 Chain information for copy of combination BP #23.90 
    38281 --- 
    38282 Chain | Description 
    38283 BP | No description available 
    38284  
    38285 Chain information for copy of combination BQ #23.91 
    38286 --- 
    38287 Chain | Description 
    38288 BQ | No description available 
    38289  
    38290 Chain information for copy of combination BR #23.92 
    38291 --- 
    38292 Chain | Description 
    38293 BR | No description available 
    38294  
    38295 Chain information for copy of combination BS #23.93 
    38296 --- 
    38297 Chain | Description 
    38298 BS | No description available 
    38299  
    38300 Chain information for copy of combination BT #23.94 
    38301 --- 
    38302 Chain | Description 
    38303 BT | No description available 
    38304  
    38305 Chain information for copy of combination BU #23.95 
    38306 --- 
    38307 Chain | Description 
    38308 BU | No description available 
    38309  
    38310 Chain information for copy of combination BV #23.96 
    38311 --- 
    38312 Chain | Description 
    38313 BV | No description available 
    38314  
    38315 Chain information for copy of combination BW #23.97 
    38316 --- 
    38317 Chain | Description 
    38318 BW | No description available 
    38319  
    38320 Chain information for copy of combination BX #23.98 
    38321 --- 
    38322 Chain | Description 
    38323 BX | No description available 
    38324  
    38325 Chain information for copy of combination BY #23.99 
    38326 --- 
    38327 Chain | Description 
    38328 BY | No description available 
    38329  
    38330 Chain information for copy of combination C #23.100 
    38331 --- 
    38332 Chain | Description 
    38333 C | No description available 
    38334  
    38335 Chain information for copy of combination D #23.101 
    38336 --- 
    38337 Chain | Description 
    38338 D | No description available 
    38339  
    38340 Chain information for copy of combination E #23.102 
    38341 --- 
    38342 Chain | Description 
    38343 E | No description available 
    38344  
    38345 Chain information for copy of combination F #23.103 
    38346 --- 
    38347 Chain | Description 
    38348 F | No description available 
    38349  
    38350 Chain information for copy of combination G #23.104 
    38351 --- 
    38352 Chain | Description 
    38353 G | No description available 
    38354  
    38355 Chain information for copy of combination H #23.105 
    38356 --- 
    38357 Chain | Description 
    38358 H | No description available 
    38359  
    38360 Chain information for copy of combination I #23.106 
    38361 --- 
    38362 Chain | Description 
    38363 I | No description available 
    38364  
    38365 Chain information for copy of combination J #23.107 
    38366 --- 
    38367 Chain | Description 
    38368 J | No description available 
    38369  
    38370 Chain information for copy of combination K #23.108 
    38371 --- 
    38372 Chain | Description 
    38373 K | No description available 
    38374  
    38375 Chain information for copy of combination L #23.109 
    38376 --- 
    38377 Chain | Description 
    38378 L | No description available 
    38379  
    38380 Chain information for copy of combination M #23.110 
    38381 --- 
    38382 Chain | Description 
    38383 M | No description available 
    38384  
    38385 Chain information for copy of combination N #23.111 
    38386 --- 
    38387 Chain | Description 
    38388 N | No description available 
    38389  
    38390 Chain information for copy of combination O #23.112 
    38391 --- 
    38392 Chain | Description 
    38393 O | No description available 
    38394  
    38395 Chain information for copy of combination P #23.113 
    38396 --- 
    38397 Chain | Description 
    38398 P | No description available 
    38399  
    38400 Chain information for copy of combination Q #23.114 
    38401 --- 
    38402 Chain | Description 
    38403 Q | No description available 
    38404  
    38405 Chain information for copy of combination R #23.115 
    38406 --- 
    38407 Chain | Description 
    38408 R | No description available 
    38409  
    38410 Chain information for copy of combination S #23.116 
    38411 --- 
    38412 Chain | Description 
    38413 S | No description available 
    38414  
    38415 Chain information for copy of combination T #23.117 
    38416 --- 
    38417 Chain | Description 
    38418 T | No description available 
    38419  
    38420 Chain information for copy of combination U #23.118 
    38421 --- 
    38422 Chain | Description 
    38423 U | No description available 
    38424  
    38425 Chain information for copy of combination V #23.119 
    38426 --- 
    38427 Chain | Description 
    38428 V | No description available 
    38429  
    38430 Chain information for copy of combination W #23.120 
    38431 --- 
    38432 Chain | Description 
    38433 W | No description available 
    38434  
    38435 Chain information for copy of combination X #23.121 
    38436 --- 
    38437 Chain | Description 
    38438 X | No description available 
    38439  
    38440 Chain information for copy of combination Y #23.122 
    38441 --- 
    38442 Chain | Description 
    38443 Y | No description available 
    38444  
    38445 Chain information for copy of combination Z #23.123 
    38446 --- 
    38447 Chain | Description 
    38448 Z | No description available 
    38449  
    38450 Chain information for copy of combination a #23.124 
    38451 --- 
    38452 Chain | Description 
    38453 a | No description available 
    38454  
    38455 Chain information for copy of combination b #23.125 
    38456 --- 
    38457 Chain | Description 
    38458 b | No description available 
    38459  
    38460 Chain information for copy of combination c #23.126 
    38461 --- 
    38462 Chain | Description 
    38463 c | No description available 
    38464  
    38465 Chain information for copy of combination d #23.127 
    38466 --- 
    38467 Chain | Description 
    38468 d | No description available 
    38469  
    38470 Chain information for copy of combination e #23.128 
    38471 --- 
    38472 Chain | Description 
    38473 e | No description available 
    38474  
    38475 Chain information for copy of combination f #23.129 
    38476 --- 
    38477 Chain | Description 
    38478 f | No description available 
    38479  
    38480 Chain information for copy of combination g #23.130 
    38481 --- 
    38482 Chain | Description 
    38483 g | No description available 
    38484  
    38485 Chain information for copy of combination h #23.131 
    38486 --- 
    38487 Chain | Description 
    38488 h | No description available 
    38489  
    38490 Chain information for copy of combination i #23.132 
    38491 --- 
    38492 Chain | Description 
    38493 i | No description available 
    38494  
    38495 Chain information for copy of combination j #23.133 
    38496 --- 
    38497 Chain | Description 
    38498 j | No description available 
    38499  
    38500 Chain information for copy of combination k #23.134 
    38501 --- 
    38502 Chain | Description 
    38503 k | No description available 
    38504  
    38505 Chain information for copy of combination l #23.135 
    38506 --- 
    38507 Chain | Description 
    38508 l | No description available 
    38509  
    38510 Chain information for copy of combination m #23.136 
    38511 --- 
    38512 Chain | Description 
    38513 m | No description available 
    38514  
    38515 Chain information for copy of combination n #23.137 
    38516 --- 
    38517 Chain | Description 
    38518 n | No description available 
    38519  
    38520 Chain information for copy of combination o #23.138 
    38521 --- 
    38522 Chain | Description 
    38523 o | No description available 
    38524  
    38525 Chain information for copy of combination p #23.139 
    38526 --- 
    38527 Chain | Description 
    38528 p | No description available 
    38529  
    38530 Chain information for copy of combination q #23.140 
    38531 --- 
    38532 Chain | Description 
    38533 q | No description available 
    38534  
    38535 Chain information for copy of combination r #23.141 
    38536 --- 
    38537 Chain | Description 
    38538 r | No description available 
    38539  
    38540 Chain information for copy of combination s #23.142 
    38541 --- 
    38542 Chain | Description 
    38543 s | No description available 
    38544  
    38545 Chain information for copy of combination t #23.143 
    38546 --- 
    38547 Chain | Description 
    38548 t | No description available 
    38549  
    38550 Chain information for copy of combination u #23.144 
    38551 --- 
    38552 Chain | Description 
    38553 u | No description available 
    38554  
    38555 Chain information for copy of combination v #23.145 
    38556 --- 
    38557 Chain | Description 
    38558 v | No description available 
    38559  
    38560 Chain information for copy of combination w #23.146 
    38561 --- 
    38562 Chain | Description 
    38563 w | No description available 
    38564  
    38565 Chain information for copy of combination x #23.147 
    38566 --- 
    38567 Chain | Description 
    38568 x | No description available 
    38569  
    38570 Chain information for copy of combination y #23.148 
    38571 --- 
    38572 Chain | Description 
    38573 y | No description available 
    38574  
    38575 Chain information for copy of combination z #23.149 
    38576 --- 
    38577 Chain | Description 
    38578 z | No description available 
    38579  
    38580 Drag select of 3074 residues 
    38581 
    38582 > hide #23.1 models
    38583 
    38584 > show #23.1 models
    38585 
    38586 > hide #23.1 models
    38587 
    38588 > hide #23.9 models
    38589 
    38590 > show #23.9 models
    38591 
    38592 > hide #23.9 models
    38593 
    38594 > hide #23.10 models
    38595 
    38596 > hide #!23.11 models
    38597 
    38598 > show #23.10 models
    38599 
    38600 > hide #23.10 models
    38601 
    38602 > show #!23.11 models
    38603 
    38604 > hide #23.15 models
    38605 
    38606 > show #23.15 models
    38607 
    38608 > hide #23.15 models
    38609 
    38610 > hide #23.22 models
    38611 
    38612 > show #23.22 models
    38613 
    38614 > hide #23.22 models
    38615 
    38616 > hide #23.23 models
    38617 
    38618 > hide #23.26 models
    38619 
    38620 > hide #23.30 models
    38621 
    38622 > show #23.30 models
    38623 
    38624 > hide #23.30 models
    38625 
    38626 > hide #23.41 models
    38627 
    38628 > show #23.41 models
    38629 
    38630 > hide #23.41 models
    38631 
    38632 > hide #23.42 models
    38633 
    38634 > hide #23.43 models
    38635 
    38636 > hide #23.44 models
    38637 
    38638 > hide #23.45 models
    38639 
    38640 > hide #23.46 models
    38641 
    38642 > hide #23.47 models
    38643 
    38644 > hide #23.48 models
    38645 
    38646 > hide #23.49 models
    38647 
    38648 > hide #23.50 models
    38649 
    38650 > hide #23.53 models
    38651 
    38652 > show #23.53 models
    38653 
    38654 > hide #23.53 models
    38655 
    38656 > hide #23.64 models
    38657 
    38658 > hide #23.65 models
    38659 
    38660 > hide #23.66 models
    38661 
    38662 > hide #23.67 models
    38663 
    38664 > hide #23.68 models
    38665 
    38666 > hide #23.69 models
    38667 
    38668 > hide #23.70 models
    38669 
    38670 > hide #23.71 models
    38671 
    38672 > hide #23.72 models
    38673 
    38674 > hide #23.73 models
    38675 
    38676 > hide #23.74 models
    38677 
    38678 > show #23.74 models
    38679 
    38680 > hide #!23.100 models
    38681 
    38682 > show #!23.100 models
    38683 
    38684 > hide #!23.101 models
    38685 
    38686 > show #!23.101 models
    38687 
    38688 > hide #23.102 models
    38689 
    38690 > show #23.102 models
    38691 
    38692 > hide #!23.104 models
    38693 
    38694 > show #!23.104 models
    38695 
    38696 > hide #!23.121 models
    38697 
    38698 > show #!23.121 models
    38699 
    38700 > hide #23.145 models
    38701 
    38702 > select clear
    38703 
    38704 Drag select of 10 residues 
    38705 
    38706 > hide #23.83 models
    38707 
    38708 > hide #23.82 models
    38709 
    38710 > hide #23.78 models
    38711 
    38712 > select clear
    38713 
    38714 Drag select of 17 residues 
    38715 
    38716 > hide #23.27 models
    38717 
    38718 > hide #23.25 models
    38719 
    38720 > hide #23.24 models
    38721 
    38722 > select clear
    38723 
    38724 Drag select of 5 residues 
    38725 
    38726 > hide #23.8 models
    38727 
    38728 > select clear
    38729 
    38730 Drag select of 17 residues 
    38731 
    38732 > hide #23.79 models
    38733 
    38734 > hide #23.80 models
    38735 
    38736 > hide #23.81 models
    38737 
    38738 Drag select of 19 residues 
    38739 
    38740 > hide #23.84 models
    38741 
    38742 > hide #23.85 models
    38743 
    38744 > hide #23.86 models
    38745 
    38746 > hide #23.87 models
    38747 
    38748 Drag select of 2262 residues 
    38749 Drag select of 417 residues 
    38750 
    38751 > hide #23.88 models
    38752 
    38753 > hide #23.89 models
    38754 
    38755 > hide #23.90 models
    38756 
    38757 > hide #23.91 models
    38758 
    38759 > hide #23.92 models
    38760 
    38761 > hide #23.93 models
    38762 
    38763 > hide #23.94 models
    38764 
    38765 > hide #23.95 models
    38766 
    38767 > hide #23.96 models
    38768 
    38769 > hide #23.97 models
    38770 
    38771 > hide #23.98 models
    38772 
    38773 > hide #23.99 models
    38774 
    38775 > hide #23.142 models
    38776 
    38777 > hide #23.141 models
    38778 
    38779 > hide #23.140 models
    38780 
    38781 > hide #23.139 models
    38782 
    38783 > hide #23.138 models
    38784 
    38785 > hide #23.137 models
    38786 
    38787 > save /Users/shoichi/Desktop/For-PflD_PflC.cxs includeMaps true
    38788 
    38789 [Repeated 1 time(s)]
    38790 
    38791 ——— End of log from Fri Jul 11 17:08:26 2025 ———
    38792 
    38793 opened ChimeraX session 
    38794 Drag select of 281 residues 
    38795 
    38796 > hide #23.2 models
    38797 
    38798 > hide #23.20 models
    38799 
    38800 > hide #23.21 models
    38801 
    38802 > hide #23.33 models
    38803 
    38804 > hide #23.34 models
    38805 
    38806 > hide #23.35 models
    38807 
    38808 > select clear
    38809 
    38810 Drag select of 34 residues 
    38811 
    38812 > hide #23.147 models
    38813 
    38814 > hide #23.148 models
    38815 
    38816 > hide #23.149 models
    38817 
    38818 Drag select of 65 residues 
    38819 
    38820 > hide #23.3 models
    38821 
    38822 > hide #23.4 models
    38823 
    38824 > hide #23.5 models
    38825 
    38826 Drag select of 137 residues 
    38827 
    38828 > hide #23.31 models
    38829 
    38830 > hide #23.32 models
    38831 
    38832 > hide #23.40 models
    38833 
    38834 Drag select of 77 residues 
    38835 
    38836 > hide #23.146 models
    38837 
    38838 > hide #23.6 models
    38839 
    38840 > hide #23.7 models
    38841 
    38842 Drag select of 21 residues 
    38843 
    38844 > hide #23.12 models
    38845 
    38846 > hide #23.75 models
    38847 
    38848 Drag select of 42 residues 
    38849 
    38850 > hide #23.39 models
    38851 
    38852 > hide #23.38 models
    38853 
    38854 > hide #23.37 models
    38855 
    38856 Drag select of 20 residues 
    38857 
    38858 > hide #23.36 models
    38859 
    38860 Drag select of 179 residues 
    38861 
    38862 > hide #23.56 models
    38863 
    38864 > hide #23.57 models
    38865 
    38866 > hide #23.58 models
    38867 
    38868 > hide #23.59 models
    38869 
    38870 > hide #23.60 models
    38871 
    38872 > hide #23.61 models
    38873 
    38874 Drag select of 51 residues 
    38875 
    38876 > hide #23.62 models
    38877 
    38878 > hide #23.63 models
    38879 
    38880 > select clear
    38881 
    38882 Drag select of 93 residues 
    38883 
    38884 > hide #23.54 models
    38885 
    38886 > hide #23.55 models
    38887 
    38888 Drag select of 15 residues 
    38889 
    38890 > hide #23.76 models
    38891 
    38892 > hide #23.77 models
    38893 
    38894 Drag select of 171 residues 
    38895 
    38896 > hide #23.17 models
    38897 
    38898 > hide #23.18 models
    38899 
    38900 > hide #23.19 models
    38901 
    38902 Drag select of 8 residues 
    38903 
    38904 > hide #23.16 models
    38905 
    38906 Drag select of 859 residues 
    38907 
    38908 > hide #!23.123 models
    38909 
    38910 > hide #23.129 models
    38911 
    38912 > hide #!23.130 models
    38913 
    38914 > select clear
    38915 
    38916 The cached device pixel ratio value was stale on window expose. Please file a
    38917 QTBUG which explains how to reproduce. 
    38918 
    38919 > close #23.75-99
    38920 
    38921 > close #23.53-73
    38922 
    38923 > close #23.30-50
    38924 
    38925 > close #23.15-27
    38926 
    38927 > close #23.1-10
    38928 
    38929 > close #23.12
    38930 
    38931 > close #23.123
    38932 
    38933 > close #23.129#23.130
    38934 
    38935 > close #23.137-142
    38936 
    38937 > close #23.145-149
    38938 
    38939 > select add #23.11
    38940 
    38941 1542 atoms, 1562 bonds, 2 pseudobonds, 189 residues, 2 models selected 
    38942 
    38943 > select add #23
    38944 
    38945 92292 atoms, 93828 bonds, 40 pseudobonds, 10088 residues, 69 models selected 
    38946 
    38947 > save /Users/shoichitachiyama/Desktop/Cage-PflCD.pdb selectedOnly true
    38948 
    38949 > open /Users/shoichitachiyama/Desktop/Cage-PflCD.pdb
    38950 
    38951 Summary of feedback from opening /Users/shoichitachiyama/Desktop/Cage-
    38952 PflCD.pdb 
    38953 --- 
    38954 warnings | Start residue of secondary structure not found: HELIX 9 9 LEU B 16 ILE B 102 1 87 
    38955 Start residue of secondary structure not found: HELIX 10 10 VAL B 103 THR B
    38956 105 1 3 
    38957 Start residue of secondary structure not found: HELIX 11 11 ARG B 129 LEU B
    38958 136 1 8 
    38959 Start residue of secondary structure not found: HELIX 12 12 GLU B 137 PRO B
    38960 139 1 3 
    38961 Start residue of secondary structure not found: HELIX 13 13 LEU B 140 SER B
    38962 142 1 3 
    38963 1328 messages similar to the above omitted 
    38964  
    38965 Chain information for Cage-PflCD.pdb 
    38966 --- 
    38967 Chain | Description 
    38968 24.1/A 24.10/D 24.13/G 24.16/J 24.19/M 24.22/P 24.25/S 24.28/V | No description available 
    38969 24.2/A1 24.3/A2 24.4/AG 24.5/AH 24.6/Ad 24.7/Ae 24.43/t 24.44/u | No description available 
    38970 24.8/B 24.11/E 24.14/H 24.17/K 24.20/N 24.23/Q 24.26/T 24.29/W | No description available 
    38971 24.9/C 24.12/F 24.15/I 24.18/L 24.21/O 24.24/R 24.27/U 24.30/X | No description available 
    38972 24.31/Y 24.32/a 24.33/b 24.34/c | No description available 
    38973 24.35/d 24.37/h 24.39/j 24.41/l | No description available 
    38974 24.36/e 24.38/i 24.40/k 24.42/m | No description available 
    38975  
    38976 
    38977 > select subtract #23
    38978 
    38979 Nothing selected 
    38980 
    38981 > hide #!23 models
    38982 
    38983 > show #!20 models
    38984 
    38985 > show #!19 models
    38986 
    38987 > hide #!19 models
    38988 
    38989 > show #!19 models
    38990 
    38991 > hide #!19 models
    38992 
    38993 > show #!19 models
    38994 
    38995 > surface dust #19 size 21.4
    38996 
    38997 > surface dust #20 size 21.4
    38998 
    38999 > surface dust #20 size 50
    39000 
    39001 > hide #!19 models
    39002 
    39003 > show #!21 models
    39004 
    39005 > color #21 #b2b2ff6c models
    39006 
    39007 > color #21 #b2b2ff61 models
    39008 
    39009 > close #24
    39010 
    39011 > show #!23 models
    39012 
    39013 Drag select of 36 residues 
    39014 
    39015 > select clear
    39016 
    39017 Drag select of 29 residues 
    39018 
    39019 > hide #23.143 models
    39020 
    39021 > hide #23.144 models
    39022 
    39023 Drag select of 47 residues 
    39024 
    39025 > hide #23.13 models
    39026 
    39027 > hide #23.14 models
    39028 
    39029 Drag select of 69 residues 
    39030 
    39031 > hide #23.28 models
    39032 
    39033 > hide #23.29 models
    39034 
    39035 Drag select of 66 residues 
    39036 
    39037 > hide #23.51 models
    39038 
    39039 > hide #23.52 models
    39040 
    39041 The cached device pixel ratio value was stale on window expose. Please file a
    39042 QTBUG which explains how to reproduce. 
    39043 
    39044 > close #23.13-14,28-29,51-52
    39045 
    39046 Drag select of 8 residues 
    39047 
    39048 > select clear
    39049 
    39050 Drag select of 26 residues 
    39051 
    39052 > hide #!23.136 models
    39053 
    39054 Drag select of 12 residues 
    39055 
    39056 > hide #!23.134 models
    39057 
    39058 Drag select of 20 residues 
    39059 
    39060 > hide #!23.128 models
    39061 
    39062 Drag select of 5 residues 
    39063 
    39064 > hide #!23.132 models
    39065 
    39066 Drag select of 9 residues 
    39067 
    39068 > hide #23.131 models
    39069 
    39070 Drag select of 3 residues 
    39071 
    39072 > hide #23.133 models
    39073 
    39074 Drag select of 1 residues 
    39075 
    39076 > hide #23.135 models
    39077 
    39078 Drag select of 1 residues 
    39079 
    39080 > hide #23.127 models
    39081 
    39082 > close #23.127,131,133,135,143-144#23.128,132,134,136
    39083 
    39084 > show #!19 models
    39085 
    39086 > hide #!19 models
    39087 
    39088 > select add #23
    39089 
    39090 46256 atoms, 47148 bonds, 36 pseudobonds, 5632 residues, 49 models selected 
    39091 
    39092 > save /Users/shoichitachiyama/Desktop/Cage-PflCD.pdb selectedOnly true
    39093 
    39094 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    39095 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    39096 > refinment/For-PflCD/Cage-PflCD.pdb"
    39097 
    39098 Chain information for Cage-PflCD.pdb 
    39099 --- 
    39100 Chain | Description 
    39101 24.1/A 24.4/D 24.7/G 24.10/J 24.13/M 24.16/P 24.19/S 24.22/V | No description available 
    39102 24.2/B 24.5/E 24.8/H 24.11/K 24.14/N 24.17/Q 24.20/T 24.23/W | No description available 
    39103 24.3/C 24.6/F 24.9/I 24.12/L 24.15/O 24.18/R 24.21/U 24.24/X | No description available 
    39104 24.25/Y 24.26/a 24.27/b 24.28/c | No description available 
    39105  
    39106 
    39107 > hide #!23 models
    39108 
    39109 > select subtract #23
    39110 
    39111 Nothing selected 
    39112 
    39113 > show #!19 models
    39114 
    39115 > color #19 #ffffb266 models
    39116 
    39117 > show #!10 models
    39118 
    39119 > hide #!10 models
    39120 
    39121 > show #!11 models
    39122 
    39123 > hide #!11 models
    39124 
    39125 > show #!11 models
    39126 
    39127 > show #!13 models
    39128 
    39129 > hide #!13 models
    39130 
    39131 > show #!13 models
    39132 
    39133 Cell requested for row 12 is out of bounds for table with 25 rows! Resizing
    39134 table model. 
    39135 
    39136 > select add #13
    39137 
    39138 18892 atoms, 19223 bonds, 2 pseudobonds, 2334 residues, 2 models selected 
    39139 
    39140 > show sel surfaces
    39141 
    39142 > select clear
    39143 
    39144 > color #19 #c0c0c080 models
    39145 
    39146 > color #20 #c0c0c080 models
    39147 
    39148 > color #21 #c0c0c080 models
    39149 
    39150 > hide #!24 models
    39151 
    39152 > show #!24 models
    39153 
    39154 > hide #!24 models
    39155 
    39156 > show #!24 models
    39157 
    39158 > hide #!19 models
    39159 
    39160 > show #!19 models
    39161 
    39162 The cached device pixel ratio value was stale on window expose. Please file a
    39163 QTBUG which explains how to reproduce. 
    39164 
    39165 Segmenting PflC.mrc, density threshold 0.007524 
    39166 Showing 36 region surfaces 
    39167 512 watershed regions, grouped to 36 regions 
    39168 Showing PflC.seg - 36 regions, 36 surfaces 
    39169 
    39170 > select #25.4
    39171 
    39172 1 model selected 
    39173 
    39174 > select add #25.22
    39175 
    39176 2 models selected 
    39177 
    39178 > select add #25.19
    39179 
    39180 3 models selected 
    39181 
    39182 > select add #25.15
    39183 
    39184 4 models selected 
    39185 
    39186 > select add #25.13
    39187 
    39188 5 models selected 
    39189 
    39190 > select add #25.18
    39191 
    39192 6 models selected 
    39193 
    39194 > select add #25.17
    39195 
    39196 7 models selected 
    39197 
    39198 > select add #25.20
    39199 
    39200 8 models selected 
    39201 
    39202 > select add #25.35
    39203 
    39204 9 models selected 
    39205 
    39206 > select add #25.3
    39207 
    39208 10 models selected 
    39209 
    39210 > select add #25.34
    39211 
    39212 11 models selected 
    39213 
    39214 > select add #25.12
    39215 
    39216 12 models selected 
    39217 
    39218 > select add #25.26
    39219 
    39220 13 models selected 
    39221 
    39222 > select add #25.8
    39223 
    39224 14 models selected 
    39225 
    39226 > select add #25.9
    39227 
    39228 15 models selected 
    39229 
    39230 > select add #25.5
    39231 
    39232 16 models selected 
    39233 
    39234 > select add #25.2
    39235 
    39236 17 models selected 
    39237 
    39238 > select add #25.1
    39239 
    39240 18 models selected 
    39241 
    39242 > select subtract #25.1
    39243 
    39244 17 models selected 
    39245 Grouped 17 regions 
    39246 
    39247 > select add #25.21
    39248 
    39249 2 models selected 
    39250 
    39251 > select add #25.29
    39252 
    39253 3 models selected 
    39254 
    39255 > select add #25.28
    39256 
    39257 4 models selected 
    39258 
    39259 > select add #25.30
    39260 
    39261 5 models selected 
    39262 
    39263 > select add #25.24
    39264 
    39265 6 models selected 
    39266 
    39267 > select add #25.27
    39268 
    39269 7 models selected 
    39270 Grouped 7 regions 
    39271 
    39272 > select #25.2
    39273 
    39274 1 model selected 
    39275 
    39276 > select #25.16
    39277 
    39278 1 model selected 
    39279 
    39280 > hide #!20 models
    39281 
    39282 > select #25.16
    39283 
    39284 1 model selected 
    39285 
    39286 > select add #25.25
    39287 
    39288 2 models selected 
    39289 
    39290 > select add #25.23
    39291 
    39292 3 models selected 
    39293 
    39294 > select add #25.14
    39295 
    39296 4 models selected 
    39297 
    39298 > select #25.23
    39299 
    39300 1 model selected 
    39301 
    39302 > select add #25.25
    39303 
    39304 2 models selected 
    39305 
    39306 > select add #25.1
    39307 
    39308 3 models selected 
    39309 
    39310 > select subtract #25.1
    39311 
    39312 2 models selected 
    39313 
    39314 > select add #25.31
    39315 
    39316 3 models selected 
    39317 
    39318 > select add #25.33
    39319 
    39320 4 models selected 
    39321 
    39322 > select add #25.32
    39323 
    39324 5 models selected 
    39325 Grouped 5 regions 
    39326 Showing 10 region surfaces 
    39327 
    39328 > select add #25.2
    39329 
    39330 2 models selected 
    39331 Grouped 2 regions 
    39332 
    39333 > select #25.14
    39334 
    39335 1 model selected 
    39336 
    39337 > select add #25.11
    39338 
    39339 2 models selected 
    39340 
    39341 > select add #25.16
    39342 
    39343 3 models selected 
    39344 Ungrouped to 9 regions 
    39345 
    39346 > select #25.9
    39347 
    39348 1 model selected 
    39349 
    39350 > select add #25.5
    39351 
    39352 2 models selected 
    39353 
    39354 > select add #25.3
    39355 
    39356 3 models selected 
    39357 
    39358 > select add #25.4
    39359 
    39360 4 models selected 
    39361 
    39362 > select add #25.15
    39363 
    39364 5 models selected 
    39365 
    39366 > select add #25.13
    39367 
    39368 6 models selected 
    39369 Grouped 6 regions 
    39370 Showing 10 region surfaces 
    39371 
    39372 > select add #25.2
    39373 
    39374 2 models selected 
    39375 Grouped 2 regions 
    39376 
    39377 > select #25.12
    39378 
    39379 1 model selected 
    39380 Ungrouped to 4 regions 
    39381 
    39382 > select #25.4
    39383 
    39384 1 model selected 
    39385 
    39386 > select add #25.9
    39387 
    39388 2 models selected 
    39389 
    39390 > select add #25.3
    39391 
    39392 3 models selected 
    39393 
    39394 > select add #25.2
    39395 
    39396 4 models selected 
    39397 Grouped 4 regions 
    39398 
    39399 > hide #!19 models
    39400 
    39401 > select #25.8
    39402 
    39403 1 model selected 
    39404 
    39405 > select add #25.5
    39406 
    39407 2 models selected 
    39408 
    39409 > select add #25.17
    39410 
    39411 3 models selected 
    39412 Ungrouped to 9 regions 
    39413 
    39414 > select #25.9
    39415 
    39416 1 model selected 
    39417 
    39418 > select add #25.4
    39419 
    39420 2 models selected 
    39421 
    39422 > select #25.14
    39423 
    39424 1 model selected 
    39425 
    39426 > select #25.10
    39427 
    39428 1 model selected 
    39429 
    39430 > save /Users/shoichitachiyama/Desktop/PflCD.cxs includeMaps true
    39431 
    39432 ——— End of log from Fri Jul 11 20:48:14 2025 ———
    39433 
    39434 opened ChimeraX session 
    39435 Showing PflC.seg - 15 regions, 15 surfaces 
    39436 
    39437 > hide #!25 models
    39438 
    39439 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    39440 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    39441 > refinment/For-PflCD/Additional_Segment/PflCD.mrc"
    39442 
    39443 Opened PflCD.mrc as #26, grid size 200,200,200, pixel 2.14, shown at level
    39444 0.0169, step 1, values float32 
    39445 
    39446 > volume #26 level 0.00187
    39447 
    39448 The cached device pixel ratio value was stale on window expose. Please file a
    39449 QTBUG which explains how to reproduce. 
    39450 
    39451 Segmenting PflCD.mrc, density threshold 0.001870 
    39452 Showing 20 region surfaces 
    39453 327 watershed regions, grouped to 20 regions 
    39454 Showing PflCD.seg - 20 regions, 20 surfaces 
    39455 
    39456 > select #25.9
    39457 
    39458 1 model selected 
    39459 
    39460 > select add #25.17
    39461 
    39462 2 models selected 
    39463 
    39464 > select add #25.2
    39465 
    39466 3 models selected 
    39467 
    39468 > hide #!26 models
    39469 
    39470 > select add #25.19
    39471 
    39472 4 models selected 
    39473 
    39474 > select add #25.18
    39475 
    39476 5 models selected 
    39477 
    39478 > select add #25.16
    39479 
    39480 6 models selected 
    39481 
    39482 > select add #25.1
    39483 
    39484 7 models selected 
    39485 
    39486 > select add #25.12
    39487 
    39488 8 models selected 
    39489 
    39490 > select add #25.11
    39491 
    39492 9 models selected 
    39493 
    39494 > select add #25.15
    39495 
    39496 10 models selected 
    39497 
    39498 > select add #25.20
    39499 
    39500 11 models selected 
    39501 Grouped 11 regions 
    39502 
    39503 The cached device pixel ratio value was stale on window expose. Please file a
    39504 QTBUG which explains how to reproduce. 
    39505 
    39506 Opened PflCD_imasked as #27, grid size 200,200,200, pixel 2.14, shown at step
    39507 1, values float32 
    39508 Segmenting PflCD_imasked, density threshold 0.001870 
    39509 Showing 9 region surfaces 
    39510 168 watershed regions, grouped to 9 regions 
    39511 Showing PflCD_imasked.seg - 9 regions, 9 surfaces 
    39512 
    39513 > select #25.4
    39514 
    39515 1 model selected 
    39516 
    39517 > select add #25.5
    39518 
    39519 2 models selected 
    39520 
    39521 > select add #25.6
    39522 
    39523 3 models selected 
    39524 Ungrouped to 10 regions 
    39525 
    39526 > select #25.12
    39527 
    39528 1 model selected 
    39529 
    39530 > hide #!27 models
    39531 
    39532 > select add #25.17
    39533 
    39534 2 models selected 
    39535 
    39536 > select add #25.19
    39537 
    39538 3 models selected 
    39539 
    39540 > select subtract #25.19
    39541 
    39542 2 models selected 
    39543 Grouped 2 regions 
    39544 
    39545 > select #25.19
    39546 
    39547 1 model selected 
    39548 
    39549 > select clear
    39550 
    39551 > select #25.19
    39552 
    39553 1 model selected 
    39554 Ungrouped to 4 regions 
    39555 
    39556 > select #25.17
    39557 
    39558 1 model selected 
    39559 
    39560 > select add #25.5
    39561 
    39562 2 models selected 
    39563 
    39564 > select add #25.4
    39565 
    39566 3 models selected 
    39567 Grouped 3 regions 
    39568 
    39569 > select add #25.12
    39570 
    39571 2 models selected 
    39572 Grouped 2 regions 
    39573 
    39574 > select add #25.16
    39575 
    39576 2 models selected 
    39577 Grouped 2 regions 
    39578 
    39579 > select #25.18
    39580 
    39581 1 model selected 
    39582 Ungrouped to 2 regions 
    39583 
    39584 > select #25.5
    39585 
    39586 1 model selected 
    39587 Showing 15 region surfaces 
    39588 
    39589 > select add #25.4
    39590 
    39591 2 models selected 
    39592 Grouped 2 regions 
    39593 
    39594 > select #25.10
    39595 
    39596 1 model selected 
    39597 Ungrouped to 3 regions 
    39598 
    39599 > select #25.17
    39600 
    39601 1 model selected 
    39602 
    39603 > select add #25.4
    39604 
    39605 2 models selected 
    39606 Grouped 2 regions 
    39607 
    39608 > select add #25.12
    39609 
    39610 2 models selected 
    39611 
    39612 > select add #25.14
    39613 
    39614 3 models selected 
    39615 Grouped 3 regions 
    39616 
    39617 > select #25.11
    39618 
    39619 1 model selected 
    39620 
    39621 > select add #25.4
    39622 
    39623 2 models selected 
    39624 Grouped 2 regions 
    39625 
    39626 > select add #25.15
    39627 
    39628 4 models selected 
    39629 
    39630 > select clear
    39631 
    39632 Showing 12 region surfaces 
    39633 
    39634 > select #25.4
    39635 
    39636 1 model selected 
    39637 
    39638 > select add #25.15
    39639 
    39640 2 models selected 
    39641 
    39642 > select add #25.2
    39643 
    39644 3 models selected 
    39645 
    39646 > select subtract #25.2
    39647 
    39648 2 models selected 
    39649 Grouped 2 regions 
    39650 
    39651 > select clear
    39652 
    39653 > select #25.4
    39654 
    39655 1 model selected 
    39656 Opened PflCD_imasked_imasked as #28, grid size 200,200,200, pixel 2.14, shown
    39657 at step 1, values float32 
    39658 Segmenting PflCD_imasked_imasked, density threshold 0.001870 
    39659 Showing 8 region surfaces 
    39660 142 watershed regions, grouped to 8 regions 
    39661 Showing PflCD_imasked_imasked.seg - 8 regions, 8 surfaces 
    39662 
    39663 > select #25.2
    39664 
    39665 1 model selected 
    39666 
    39667 > select add #25.3
    39668 
    39669 2 models selected 
    39670 
    39671 > select add #25.1
    39672 
    39673 3 models selected 
    39674 Ungrouped to 7 regions 
    39675 Ungrouped to 33 regions 
    39676 
    39677 > select #25.2
    39678 
    39679 1 model selected 
    39680 
    39681 > select add #25.3
    39682 
    39683 2 models selected 
    39684 
    39685 > select add #25.1
    39686 
    39687 3 models selected 
    39688 
    39689 > select add #25.18
    39690 
    39691 4 models selected 
    39692 
    39693 > select add #25.17
    39694 
    39695 5 models selected 
    39696 
    39697 > select add #25.20
    39698 
    39699 6 models selected 
    39700 
    39701 > hide #!28 models
    39702 
    39703 Segmenting PflCD_imasked_imasked, density threshold 0.001870 
    39704 Showing 8 region surfaces 
    39705 142 watershed regions, grouped to 8 regions 
    39706 Showing PflCD_imasked_imasked.seg - 8 regions, 8 surfaces 
    39707 
    39708 > select #25.8
    39709 
    39710 1 model selected 
    39711 
    39712 > select add #25.7
    39713 
    39714 2 models selected 
    39715 
    39716 > select add #25.4
    39717 
    39718 3 models selected 
    39719 Ungrouped to 8 regions 
    39720 Ungrouped to 15 regions 
    39721 Ungrouped to 8 regions 
    39722 Ungrouped to 0 regions 
    39723 
    39724 > select #25.23
    39725 
    39726 1 model selected 
    39727 
    39728 > select add #25.16
    39729 
    39730 2 models selected 
    39731 
    39732 > select add #25.24
    39733 
    39734 3 models selected 
    39735 
    39736 > select add #25.22
    39737 
    39738 4 models selected 
    39739 
    39740 > select add #25.27
    39741 
    39742 5 models selected 
    39743 
    39744 > select subtract #25.27
    39745 
    39746 4 models selected 
    39747 Grouped 4 regions 
    39748 
    39749 > select #25.27
    39750 
    39751 1 model selected 
    39752 Ungrouped to 0 regions 
    39753 Showing 25 region surfaces 
    39754 
    39755 > select #25.8
    39756 
    39757 1 model selected 
    39758 Opened PflCD_imasked_imasked_imasked as #29, grid size 200,200,200, pixel
    39759 2.14, shown at step 1, values float32 
    39760 
    39761 > hide #!25 models
    39762 
    39763 The cached device pixel ratio value was stale on window expose. Please file a
    39764 QTBUG which explains how to reproduce. 
    39765 
    39766 > save /Users/shoichitachiyama/Desktop/Polished-PflCD.mrc models #29
    39767 
    39768 Cell requested for row 25 is out of bounds for table with 54 rows! Resizing
    39769 table model. 
    39770 
    39771 > close #26-28
    39772 
    39773 > select add #25
    39774 
    39775 26 models selected 
    39776 
    39777 > select subtract #25
    39778 
    39779 Nothing selected 
    39780 
    39781 The cached device pixel ratio value was stale on window expose. Please file a
    39782 QTBUG which explains how to reproduce. 
    39783 
    39784 > volume gaussian #29 sDev 2
    39785 
    39786 Opened Polished-PflCD.mrc gaussian as #26, grid size 200,200,200, pixel 2.14,
    39787 shown at step 1, values float32 
    39788 
    39789 > surface dust #26 size 40
    39790 
    39791 > color #26 #c0c0c080 models
    39792 
    39793 Drag select of 357 residues 
    39794 
    39795 > hide #24.16 models
    39796 
    39797 > hide #24.17 models
    39798 
    39799 > hide #24.18 models
    39800 
    39801 Drag select of 203 residues 
    39802 
    39803 > hide #24.26 models
    39804 
    39805 > select clear
    39806 
    39807 > hide #!11 models
    39808 
    39809 > show #!10 models
    39810 
    39811 > hide #!10 models
    39812 
    39813 > show #!14 models
    39814 
    39815 > hide #!14 models
    39816 
    39817 > show #!9 models
    39818 
    39819 Drag select of 423 residues 
    39820 Drag select of 3 residues 
    39821 
    39822 > hide sel cartoons
    39823 
    39824 Drag select of 10 residues 
    39825 
    39826 > hide sel cartoons
    39827 
    39828 Drag select of 15 residues 
    39829 
    39830 > hide sel cartoons
    39831 
    39832 Drag select of 2 residues 
    39833 
    39834 > hide sel cartoons
    39835 
    39836 > hide #24.15 models
    39837 
    39838 > show #24.15 models
    39839 
    39840 > hide #24.15 models
    39841 
    39842 > show #24.15 models
    39843 
    39844 > hide #!26 models
    39845 
    39846 > select clear
    39847 
    39848 Drag select of 168 residues 
    39849 
    39850 > color #24.25 #b2c89dff
    39851 
    39852 > color #24.25 #b9d0a3ff
    39853 
    39854 > color #24.25 #95d0a7ff
    39855 
    39856 > color #24.25 #95d0a4ff
    39857 
    39858 > color #24.25 #9ed0afff
    39859 
    39860 > color #24.25 #75d09dff
    39861 
    39862 > color #24.25 #73d0a5ff
    39863 
    39864 > color #24.25 #47d07eff
    39865 
    39866 > color #24.25 #92d0aeff
    39867 
    39868 > color #24.25 #82d08fff
    39869 
    39870 > color #24.25 #9ed0a6ff
    39871 
    39872 > color #24.25 #c2ffcbff
    39873 
    39874 > color #24.25 #9db8ffff
    39875 
    39876 > color #24.25 #7889ffff
    39877 
    39878 > color #24.25 #7494ffff
    39879 
    39880 > color #24.25 #7593ffff
    39881 
    39882 > color #24.25 #7881ffff
    39883 
    39884 > color #24.25 #7a83ffff
    39885 
    39886 > color #24.25 #7b80ffff
    39887 
    39888 > select clear
    39889 
    39890 > show #24.26 models
    39891 
    39892 > hide #24.26 models
    39893 
    39894 > hide #24.25 models
    39895 
    39896 > show #24.25 models
    39897 
    39898 > hide #24.27 models
    39899 
    39900 > show #24.27 models
    39901 
    39902 > color #24.27 #7b80ffff
    39903 
    39904 > color #24.28 #7b80ffff
    39905 
    39906 > hide #24.21 models
    39907 
    39908 > show #24.21 models
    39909 
    39910 > hide #24.19 models
    39911 
    39912 > show #24.19 models
    39913 
    39914 > hide #24.19 models
    39915 
    39916 > show #24.19 models
    39917 
    39918 > hide #24.20 models
    39919 
    39920 > show #24.20 models
    39921 
    39922 > hide #24.21 models
    39923 
    39924 > show #24.21 models
    39925 
    39926 > color #24.21 #ff7b61ff
    39927 
    39928 > color #24.21 #c7ffc7ff
    39929 
    39930 > color #24.21 #caffddff
    39931 
    39932 > color #24.21 #adffc1ff
    39933 
    39934 > hide #24.23 models
    39935 
    39936 > show #24.23 models
    39937 
    39938 > hide #24.24 models
    39939 
    39940 > show #24.24 models
    39941 
    39942 > color #24.24 #adffc1ff
    39943 
    39944 > hide #24.20 models
    39945 
    39946 > show #24.20 models
    39947 
    39948 > hide #24.15 models
    39949 
    39950 > show #24.15 models
    39951 
    39952 > color #24.15 #adffc1ff
    39953 
    39954 > hide #24.3 models
    39955 
    39956 > show #24.3 models
    39957 
    39958 > color #24.3 #adffc1ff
    39959 
    39960 > hide #24.10 models
    39961 
    39962 > show #24.10 models
    39963 
    39964 > hide #24.11 models
    39965 
    39966 > show #24.11 models
    39967 
    39968 > hide #24.12 models
    39969 
    39970 > show #24.12 models
    39971 
    39972 > color #24.12 #adffc1ff
    39973 
    39974 > color #24.9 #adffc1ff
    39975 
    39976 > color #24.6 #adffc1ff
    39977 
    39978 > hide #24.2 models
    39979 
    39980 > show #24.2 models
    39981 
    39982 > color #24.2 #4a9ed2ff
    39983 
    39984 > color #24.2 #3ab3ffff
    39985 
    39986 > color #24.2 #23a0d0ff
    39987 
    39988 > color #24.2 #1580d9ff
    39989 
    39990 > color #24.2 #2c94d9ff
    39991 
    39992 > color #24.2 #33aeffff
    39993 
    39994 > color #24.2 #2275ffff
    39995 
    39996 > color #24.2 #1c8bffff
    39997 
    39998 > color #24.2 #1886ffff
    39999 
    40000 > color #24.2 #1b7bffff
    40001 
    40002 > color #24.2 #0b6dffff
    40003 
    40004 > hide #24.5 models
    40005 
    40006 > show #24.5 models
    40007 
    40008 > hide #24.5 models
    40009 
    40010 > show #24.5 models
    40011 
    40012 > select add #24.5
    40013 
    40014 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    40015 
    40016 > hide #24.14 models
    40017 
    40018 > show #24.14 models
    40019 
    40020 > select add #24.14
    40021 
    40022 2916 atoms, 2976 bonds, 350 residues, 2 models selected 
    40023 
    40024 > hide #24.22 models
    40025 
    40026 > show #24.22 models
    40027 
    40028 > hide #24.22 models
    40029 
    40030 > show #24.22 models
    40031 
    40032 > hide #24.23 models
    40033 
    40034 > show #24.23 models
    40035 
    40036 > select add #24.23
    40037 
    40038 4374 atoms, 4464 bonds, 525 residues, 3 models selected 
    40039 
    40040 > hide #24.10 models
    40041 
    40042 > show #24.10 models
    40043 
    40044 > hide #24.11 models
    40045 
    40046 > show #24.11 models
    40047 
    40048 > select add #24.11
    40049 
    40050 5832 atoms, 5952 bonds, 700 residues, 4 models selected 
    40051 
    40052 > hide #24.1 models
    40053 
    40054 > show #24.1 models
    40055 
    40056 > select add #24.20
    40057 
    40058 7290 atoms, 7440 bonds, 875 residues, 5 models selected 
    40059 
    40060 > color sel #0b6dffff
    40061 
    40062 > select clear
    40063 
    40064 > hide #24.10 models
    40065 
    40066 > show #24.10 models
    40067 
    40068 > color #24.10 #ffc32eff
    40069 
    40070 > color #24.10 #1eddffff
    40071 
    40072 > color #24.10 #20deffff
    40073 
    40074 > color #24.10 #20e0ffff
    40075 
    40076 > select add #24.13
    40077 
    40078 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40079 
    40080 > select add #24.19
    40081 
    40082 3084 atoms, 3128 bonds, 378 residues, 2 models selected 
    40083 
    40084 > select subtract #24.19
    40085 
    40086 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40087 
    40088 > select add #24.19
    40089 
    40090 3084 atoms, 3128 bonds, 378 residues, 2 models selected 
    40091 
    40092 > select add #24.22
    40093 
    40094 4626 atoms, 4692 bonds, 567 residues, 3 models selected 
    40095 
    40096 > select add #24.4
    40097 
    40098 6168 atoms, 6256 bonds, 756 residues, 4 models selected 
    40099 
    40100 > select add #24.1
    40101 
    40102 7710 atoms, 7820 bonds, 945 residues, 5 models selected 
    40103 
    40104 > color sel #20e0ffff
    40105 
    40106 > select clear
    40107 
    40108 > hide #!13 models
    40109 
    40110 > select add #13
    40111 
    40112 18892 atoms, 19223 bonds, 2 pseudobonds, 2334 residues, 2 models selected 
    40113 
    40114 > show #!13 models
    40115 
    40116 > select subtract #13
    40117 
    40118 7 models selected 
    40119 
    40120 > show #!26 models
    40121 
    40122 > surface dust #9 size 21.4
    40123 
    40124 > surface dust #21 size 21.4
    40125 
    40126 > surface dust #26 size 21.4
    40127 
    40128 > hide #!26 models
    40129 
    40130 > show #!26 models
    40131 
    40132 > volume #26 level 0.001017
    40133 
    40134 > combine #24
    40135 
    40136 > hide #!24 models
    40137 
    40138 > select #9
    40139 
    40140 2 models selected 
    40141 
    40142 > select #9
    40143 
    40144 2 models selected 
    40145 
    40146 > select clear
    40147 
    40148 > select #9
    40149 
    40150 2 models selected 
    40151 
    40152 > select #9
    40153 
    40154 2 models selected 
    40155 
    40156 > select clear
    40157 
    40158 > surface dust #9 size 50
    40159 
    40160 > hide #!26 models
    40161 
    40162 > hide #!21 models
    40163 
    40164 > show #!21 models
    40165 
    40166 Segmenting Cages2.mrc, density threshold 0.001871 
    40167 Showing 18 region surfaces 
    40168 194 watershed regions, grouped to 18 regions 
    40169 Showing Cages2.seg - 18 regions, 18 surfaces 
    40170 
    40171 > select #25.7
    40172 
    40173 1 model selected 
    40174 
    40175 > select add #25.17
    40176 
    40177 2 models selected 
    40178 
    40179 > select add #25.12
    40180 
    40181 3 models selected 
    40182 Opened Cages2_imasked as #28, grid size 200,200,200, pixel 2.14, shown at step
    40183 1, values float32 
    40184 
    40185 The cached device pixel ratio value was stale on window expose. Please file a
    40186 QTBUG which explains how to reproduce. 
    40187 
    40188 > save /Users/shoichitachiyama/Desktop/Polished_Cage2.mrc models #28
    40189 
    40190 > select clear
    40191 
    40192 > hide #!25 models
    40193 
    40194 > hide #!21 models
    40195 
    40196 > volume gaussian #28 sDev 2
    40197 
    40198 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    40199 shown at step 1, values float32 
    40200 
    40201 > color #30 #c0c0c080 models
    40202 
    40203 > hide #27 models
    40204 
    40205 > show #!24 models
    40206 
    40207 > select add #24.1
    40208 
    40209 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40210 
    40211 > select subtract #24.1
    40212 
    40213 Nothing selected 
    40214 
    40215 > hide #24.1 models
    40216 
    40217 > show #24.1 models
    40218 
    40219 > hide #24.14 models
    40220 
    40221 > show #24.14 models
    40222 
    40223 > hide #24.4 models
    40224 
    40225 > hide #24.5 models
    40226 
    40227 > hide #24.6 models
    40228 
    40229 > hide #24.9 models
    40230 
    40231 > show #!29 models
    40232 
    40233 > select add #29
    40234 
    40235 2 models selected 
    40236 
    40237 > select subtract #29
    40238 
    40239 Nothing selected 
    40240 
    40241 > hide #!29 models
    40242 
    40243 > show #!26 models
    40244 
    40245 > save /Users/shoichitachiyama/Desktop/For_PflCD.cxs includeMaps true
    40246 
    40247 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    40248 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    40249 > refinment/For-Chimera-PflAB/Resegment/Part3/IM2.mrc"
    40250 
    40251 Opened IM2.mrc as #31, grid size 200,200,200, pixel 2.14, shown at level
    40252 0.0151, step 1, values float32 
    40253 
    40254 > volume #31 level 0.001791
    40255 
    40256 Segmenting IM2.mrc, density threshold 0.001791 
    40257 Showing 76 region surfaces 
    40258 1167 watershed regions, grouped to 76 regions 
    40259 Showing IM2.seg - 76 regions, 76 surfaces 
    40260 
    40261 > select #25.71
    40262 
    40263 1 model selected 
    40264 
    40265 > select add #25.36
    40266 
    40267 2 models selected 
    40268 
    40269 > select add #25.19
    40270 
    40271 3 models selected 
    40272 
    40273 > select add #25.4
    40274 
    40275 4 models selected 
    40276 
    40277 > select add #25.26
    40278 
    40279 5 models selected 
    40280 
    40281 > select add #25.2
    40282 
    40283 6 models selected 
    40284 
    40285 > select add #25.14
    40286 
    40287 7 models selected 
    40288 
    40289 > select add #25.3
    40290 
    40291 8 models selected 
    40292 
    40293 > select add #25.13
    40294 
    40295 9 models selected 
    40296 
    40297 > select add #25.32
    40298 
    40299 10 models selected 
    40300 
    40301 > select add #25.39
    40302 
    40303 11 models selected 
    40304 
    40305 > select add #25.10
    40306 
    40307 12 models selected 
    40308 
    40309 > select add #25.8
    40310 
    40311 13 models selected 
    40312 
    40313 > select add #25.18
    40314 
    40315 14 models selected 
    40316 
    40317 > select add #25.34
    40318 
    40319 15 models selected 
    40320 
    40321 > select add #25.47
    40322 
    40323 16 models selected 
    40324 
    40325 > select add #25.16
    40326 
    40327 17 models selected 
    40328 
    40329 > select add #25.20
    40330 
    40331 18 models selected 
    40332 
    40333 > select add #25.28
    40334 
    40335 19 models selected 
    40336 
    40337 > select add #25.69
    40338 
    40339 20 models selected 
    40340 
    40341 > select add #25.30
    40342 
    40343 21 models selected 
    40344 
    40345 > select add #25.49
    40346 
    40347 22 models selected 
    40348 
    40349 > select add #25.27
    40350 
    40351 23 models selected 
    40352 
    40353 > select add #25.53
    40354 
    40355 24 models selected 
    40356 
    40357 > select add #25.68
    40358 
    40359 25 models selected 
    40360 
    40361 > select add #25.7
    40362 
    40363 26 models selected 
    40364 
    40365 > select add #25.1
    40366 
    40367 27 models selected 
    40368 
    40369 > hide #!31 models
    40370 
    40371 > select add #25.42
    40372 
    40373 28 models selected 
    40374 
    40375 > select add #25.76
    40376 
    40377 29 models selected 
    40378 
    40379 > select add #25.52
    40380 
    40381 30 models selected 
    40382 
    40383 > select add #25.29
    40384 
    40385 31 models selected 
    40386 
    40387 > select add #25.57
    40388 
    40389 32 models selected 
    40390 
    40391 > select add #25.9
    40392 
    40393 33 models selected 
    40394 
    40395 > select add #25.60
    40396 
    40397 34 models selected 
    40398 
    40399 > select add #25.43
    40400 
    40401 35 models selected 
    40402 
    40403 > select add #25.72
    40404 
    40405 36 models selected 
    40406 
    40407 > select add #25.73
    40408 
    40409 37 models selected 
    40410 
    40411 > select add #25.21
    40412 
    40413 38 models selected 
    40414 
    40415 > select add #25.50
    40416 
    40417 39 models selected 
    40418 
    40419 > select add #25.40
    40420 
    40421 40 models selected 
    40422 
    40423 > select add #25.37
    40424 
    40425 41 models selected 
    40426 
    40427 > select add #25.38
    40428 
    40429 42 models selected 
    40430 
    40431 > select add #25.33
    40432 
    40433 43 models selected 
    40434 
    40435 > select add #25.70
    40436 
    40437 44 models selected 
    40438 
    40439 > select add #25.61
    40440 
    40441 45 models selected 
    40442 
    40443 > select add #25.46
    40444 
    40445 46 models selected 
    40446 
    40447 > select add #25.62
    40448 
    40449 47 models selected 
    40450 
    40451 > select add #25.75
    40452 
    40453 48 models selected 
    40454 
    40455 > select add #25.74
    40456 
    40457 49 models selected 
    40458 
    40459 > select add #25.17
    40460 
    40461 50 models selected 
    40462 
    40463 > select add #25.41
    40464 
    40465 51 models selected 
    40466 
    40467 > select add #25.65
    40468 
    40469 52 models selected 
    40470 
    40471 > select add #25.12
    40472 
    40473 53 models selected 
    40474 
    40475 > select add #25.22
    40476 
    40477 54 models selected 
    40478 
    40479 > select add #25.15
    40480 
    40481 55 models selected 
    40482 
    40483 > select add #25.35
    40484 
    40485 56 models selected 
    40486 
    40487 > select add #25.45
    40488 
    40489 57 models selected 
    40490 
    40491 > select add #25.5
    40492 
    40493 58 models selected 
    40494 
    40495 > select add #25.66
    40496 
    40497 59 models selected 
    40498 
    40499 > select add #25.6
    40500 
    40501 60 models selected 
    40502 
    40503 > select add #25.51
    40504 
    40505 61 models selected 
    40506 
    40507 > select add #25.23
    40508 
    40509 62 models selected 
    40510 Grouped 62 regions 
    40511 Opened IM2_imasked as #32, grid size 200,200,200, pixel 2.14, shown at step 1,
    40512 values float32 
    40513 Segmenting IM2_imasked, density threshold 0.001791 
    40514 Showing 14 region surfaces 
    40515 133 watershed regions, grouped to 14 regions 
    40516 Showing IM2_imasked.seg - 14 regions, 14 surfaces 
    40517 
    40518 > hide #!25 models
    40519 
    40520 > volume #32 level 0.001462
    40521 
    40522 The cached device pixel ratio value was stale on window expose. Please file a
    40523 QTBUG which explains how to reproduce. 
    40524 
    40525 > save /Users/shoichitachiyama/Desktop/Polished-IM2.mrc models #32
    40526 
    40527 > close #31
    40528 
    40529 > volume gaussian #32 sDev 8
    40530 
    40531 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    40532 shown at step 1, values float32 
    40533 
    40534 > close #31
    40535 
    40536 > volume gaussian #32 sDev 6
    40537 
    40538 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    40539 shown at step 1, values float32 
    40540 
    40541 > close #30
    40542 
    40543 > show #!28 models
    40544 
    40545 > volume gaussian #28 sDev 2
    40546 
    40547 Opened Polished_Cage2.mrc gaussian as #30, grid size 200,200,200, pixel 2.14,
    40548 shown at step 1, values float32 
    40549 
    40550 > color #30 #c0c0c080 models
    40551 
    40552 > close #31
    40553 
    40554 > volume gaussian #32 sDev 4
    40555 
    40556 Opened Polished-IM2.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    40557 shown at step 1, values float32 
    40558 
    40559 > surface dust #31 size 50
    40560 
    40561 > color #31 #c0c0c080 models
    40562 
    40563 > save /Users/shoichitachiyama/Desktop/For_PflCD.cxs includeMaps true
    40564 
    40565 > hide #24.1 models
    40566 
    40567 > show #24.1 models
    40568 
    40569 > hide #24.1 models
    40570 
    40571 > show #24.1 models
    40572 
    40573 > hide #!24 models
    40574 
    40575 > show #27 models
    40576 
    40577 > hide #27 models
    40578 
    40579 > show #27 models
    40580 
    40581 > hide #27 models
    40582 
    40583 > show #!24 models
    40584 
    40585 > hide #24.1 models
    40586 
    40587 > show #24.1 models
    40588 
    40589 > hide #24.1 models
    40590 
    40591 > hide #24.2 models
    40592 
    40593 > hide #24.3 models
    40594 
    40595 > show #24.3 models
    40596 
    40597 > show #24.2 models
    40598 
    40599 > show #24.1 models
    40600 
    40601 > hide #!24 models
    40602 
    40603 > select add #24
    40604 
    40605 46256 atoms, 47176 bonds, 5632 residues, 29 models selected 
    40606 
    40607 > select subtract #24
    40608 
    40609 Nothing selected 
    40610 
    40611 > show #!24 models
    40612 
    40613 > hide #!24 models
    40614 
    40615 > show #!24 models
    40616 
    40617 > hide #!30 models
    40618 
    40619 > show #!30 models
    40620 
    40621 > hide #!30 models
    40622 
    40623 > hide #!31 models
    40624 
    40625 > show #!31 models
    40626 
    40627 > show #!30 models
    40628 
    40629 > hide #!26 models
    40630 
    40631 > show #!26 models
    40632 
    40633 Segmenting Polished-PflCD.mrc gaussian, density threshold 0.001017 
    40634 Showing 6 region surfaces 
    40635 70 watershed regions, grouped to 6 regions 
    40636 Showing Polished-PflCD gaussian.seg - 6 regions, 6 surfaces 
    40637 
    40638 > select #25.5
    40639 
    40640 1 model selected 
    40641 
    40642 > select add #25.2
    40643 
    40644 2 models selected 
    40645 
    40646 > select add #25.4
    40647 
    40648 3 models selected 
    40649 
    40650 > select add #25.3
    40651 
    40652 4 models selected 
    40653 Opened Polished-PflCD_imasked as #33, grid size 200,200,200, pixel 2.14, shown
    40654 at step 1, values float32 
    40655 
    40656 The cached device pixel ratio value was stale on window expose. Please file a
    40657 QTBUG which explains how to reproduce. 
    40658 
    40659 > save /Users/shoichitachiyama/Desktop/Polished-PflCD_single.mrc models #33
    40660 
    40661 > hide #!25 models
    40662 
    40663 > hide #!30 models
    40664 
    40665 > show #!30 models
    40666 
    40667 > hide #!30 models
    40668 
    40669 > show #!30 models
    40670 
    40671 > hide #!30 models
    40672 
    40673 > show #!30 models
    40674 
    40675 > hide #!30 models
    40676 
    40677 > show #!30 models
    40678 
    40679 Segmenting Polished_Cage2.mrc gaussian, density threshold 0.001839 
    40680 Showing 14 region surfaces 
    40681 88 watershed regions, grouped to 14 regions 
    40682 Showing Polished_Cage2 gaussian.seg - 14 regions, 14 surfaces 
    40683 
    40684 > select #25.1
    40685 
    40686 1 model selected 
    40687 Opened Polished_Cage2_imasked as #34, grid size 200,200,200, pixel 2.14, shown
    40688 at step 1, values float32 
    40689 
    40690 The cached device pixel ratio value was stale on window expose. Please file a
    40691 QTBUG which explains how to reproduce. 
    40692 
    40693 > save /Users/shoichitachiyama/Desktop/Single-Cage.mrc models #34
    40694 
    40695 > select clear
    40696 
    40697 > select #25.1
    40698 
    40699 1 model selected 
    40700 
    40701 > select add #25.10
    40702 
    40703 2 models selected 
    40704 
    40705 > select add #25.12
    40706 
    40707 3 models selected 
    40708 
    40709 > select add #25.6
    40710 
    40711 4 models selected 
    40712 Opened Polished_Cage2_imasked as #35, grid size 200,200,200, pixel 2.14, shown
    40713 at step 1, values float32 
    40714 
    40715 The cached device pixel ratio value was stale on window expose. Please file a
    40716 QTBUG which explains how to reproduce. 
    40717 
    40718 > save /Users/shoichitachiyama/Desktop/Single-Cage-arch.mrc models #35
    40719 
    40720 > save /Users/shoichitachiyama/Desktop/For_PflCD.cxs includeMaps true
    40721 
    40722 ——— End of log from Fri Jul 11 22:22:46 2025 ———
    40723 
    40724 opened ChimeraX session 
    40725 Showing Polished_Cage2 gaussian.seg - 14 regions, 14 surfaces 
    40726 
    40727 > hide #!25 models
    40728 
    40729 > hide #!35 models
    40730 
    40731 > hide #!34 models
    40732 
    40733 > hide #!33 models
    40734 
    40735 > show #!33 models
    40736 
    40737 > hide #!33 models
    40738 
    40739 > hide #!31 models
    40740 
    40741 > hide #!30 models
    40742 
    40743 > show #!30 models
    40744 
    40745 > hide #!30 models
    40746 
    40747 > hide #!26 models
    40748 
    40749 > hide #!24 models
    40750 
    40751 > show #!24 models
    40752 
    40753 > show #!33 models
    40754 
    40755 > hide #!33 models
    40756 
    40757 > show #!33 models
    40758 
    40759 > hide #!33 models
    40760 
    40761 > show #!34 models
    40762 
    40763 > hide #!34 models
    40764 
    40765 > select add #24.19
    40766 
    40767 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40768 
    40769 > select subtract #24.19
    40770 
    40771 Nothing selected 
    40772 
    40773 > select add #24.20
    40774 
    40775 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    40776 
    40777 > select subtract #24.20
    40778 
    40779 Nothing selected 
    40780 
    40781 > select add #24.11
    40782 
    40783 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    40784 
    40785 > select subtract #24.11
    40786 
    40787 Nothing selected 
    40788 
    40789 > select add #24.1
    40790 
    40791 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40792 
    40793 > select subtract #24.1
    40794 
    40795 Nothing selected 
    40796 
    40797 > select add #24.13
    40798 
    40799 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40800 
    40801 > select subtract #24.13
    40802 
    40803 Nothing selected 
    40804 
    40805 > select add #24.10
    40806 
    40807 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40808 
    40809 > select add #24.11
    40810 
    40811 3000 atoms, 3052 bonds, 364 residues, 2 models selected 
    40812 
    40813 > select subtract #24.11
    40814 
    40815 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40816 
    40817 > select subtract #24.10
    40818 
    40819 Nothing selected 
    40820 
    40821 > select add #24.22
    40822 
    40823 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40824 
    40825 > select add #24.23
    40826 
    40827 3000 atoms, 3052 bonds, 364 residues, 2 models selected 
    40828 
    40829 > select add #24.24
    40830 
    40831 4355 atoms, 4440 bonds, 526 residues, 3 models selected 
    40832 
    40833 > mlp sel
    40834 
    40835 Map values for surface "Cage-PflCD.pdb_V SES surface": minimum -25.84, mean
    40836 -2.565, maximum 23.8 
    40837 Map values for surface "Cage-PflCD.pdb_X SES surface": minimum -25.94, mean
    40838 -2.294, maximum 23.72 
    40839 Map values for surface "Cage-PflCD.pdb_W SES surface": minimum -28.76, mean
    40840 -1.748, maximum 22.7 
    40841 To also show corresponding color key, enter the above mlp command and add key
    40842 true 
    40843 
    40844 > hide sel surfaces
    40845 
    40846 [Repeated 1 time(s)]
    40847 
    40848 > show sel surfaces
    40849 
    40850 > hide sel surfaces
    40851 
    40852 > select clear
    40853 
    40854 [Repeated 2 time(s)]Drag select of 127 residues 
    40855 
    40856 > hide sel cartoons
    40857 
    40858 > hide #!13 models
    40859 
    40860 > hide #!9 models
    40861 
    40862 Drag select of 432 residues 
    40863 
    40864 > select clear
    40865 
    40866 Drag select of 910 residues 
    40867 
    40868 > select add #24.1
    40869 
    40870 8516 atoms, 1564 bonds, 1043 residues, 10 models selected 
    40871 
    40872 > select subtract #24.1
    40873 
    40874 6974 atoms, 854 residues, 9 models selected 
    40875 
    40876 > select add #24.2
    40877 
    40878 7866 atoms, 1488 bonds, 959 residues, 9 models selected 
    40879 
    40880 > select subtract #24.2
    40881 
    40882 6408 atoms, 784 residues, 8 models selected 
    40883 
    40884 > select add #24.3
    40885 
    40886 7528 atoms, 1388 bonds, 917 residues, 8 models selected 
    40887 
    40888 > select subtract #24.3
    40889 
    40890 6173 atoms, 755 residues, 7 models selected 
    40891 
    40892 > save /Users/shoichitachiyama/Desktop/Single_unit_cage-PflCD.pdb selectedOnly
    40893 > true
    40894 
    40895 > show #!35 models
    40896 
    40897 > select clear
    40898 
    40899 > select add #24.22
    40900 
    40901 1542 atoms, 1564 bonds, 189 residues, 1 model selected 
    40902 
    40903 > select add #24.23
    40904 
    40905 3000 atoms, 3052 bonds, 364 residues, 3 models selected 
    40906 
    40907 > select add #24.24
    40908 
    40909 4355 atoms, 4440 bonds, 526 residues, 5 models selected 
    40910 
    40911 > select add #24.28
    40912 
    40913 7209 atoms, 7354 bonds, 882 residues, 7 models selected 
    40914 
    40915 > show sel cartoons
    40916 
    40917 > select clear
    40918 
    40919 Drag select of 152 residues 
    40920 
    40921 > hide sel cartoons
    40922 
    40923 Drag select of 139 residues, 35 Single-Cage-arch.mrc 
    40924 
    40925 > hide sel cartoons
    40926 
    40927 > hide #!35 models
    40928 
    40929 Drag select of 1112 residues 
    40930 
    40931 > select add #24.1
    40932 
    40933 11927 atoms, 1564 bonds, 1457 residues, 13 models selected 
    40934 
    40935 > select subtract #24.1
    40936 
    40937 10385 atoms, 1268 residues, 12 models selected 
    40938 
    40939 > select add #24.2
    40940 
    40941 10747 atoms, 1488 bonds, 1310 residues, 12 models selected 
    40942 
    40943 > select subtract #24.2
    40944 
    40945 9289 atoms, 1135 residues, 11 models selected 
    40946 
    40947 > select add #24.3
    40948 
    40949 9800 atoms, 1388 bonds, 1196 residues, 11 models selected 
    40950 
    40951 > select subtract #24.3
    40952 
    40953 8445 atoms, 1034 residues, 10 models selected 
    40954 
    40955 > select clear
    40956 
    40957 Drag select of 934 residues 
    40958 
    40959 > select add #24.1
    40960 
    40961 8558 atoms, 1564 bonds, 1046 residues, 10 models selected 
    40962 
    40963 > select subtract #24.1
    40964 
    40965 7016 atoms, 857 residues, 9 models selected 
    40966 
    40967 > select add #24.2
    40968 
    40969 7789 atoms, 1488 bonds, 949 residues, 9 models selected 
    40970 
    40971 > select subtract #24.2
    40972 
    40973 6331 atoms, 774 residues, 8 models selected 
    40974 
    40975 > select add #24.3
    40976 
    40977 7433 atoms, 1388 bonds, 905 residues, 8 models selected 
    40978 
    40979 > select subtract #24.3
    40980 
    40981 6078 atoms, 743 residues, 7 models selected 
    40982 Drag select of 374 residues 
    40983 
    40984 > save /Users/shoichitachiyama/Desktop/Single_unit_cage-PflCD.pdb selectedOnly
    40985 > true
    40986 
    40987 > select clear
    40988 
    40989 > hide #!24 models
    40990 
    40991 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    40992 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    40993 > refinment/For-PflCD/For_correlation/Single_unit_cage-PflCD.pdb"
    40994 
    40995 Chain information for Single_unit_cage-PflCD.pdb 
    40996 --- 
    40997 Chain | Description 
    40998 36.1/J | No description available 
    40999 36.2/K | No description available 
    41000 36.3/L | No description available 
    41001 36.4/V | No description available 
    41002 36.5/W | No description available 
    41003 36.6/X | No description available 
    41004 36.7/c | No description available 
    41005  
    41006 
    41007 Cell requested for row 23 is out of bounds for table with 63 rows! Resizing
    41008 table model. 
    41009 
    41010 > show #!33 models
    41011 
    41012 > select add #36.6
    41013 
    41014 1094 atoms, 1122 bonds, 130 residues, 1 model selected 
    41015 
    41016 > select subtract #36.6
    41017 
    41018 Nothing selected 
    41019 
    41020 > hide #36.1 models
    41021 
    41022 > hide #36.2 models
    41023 
    41024 > hide #36.3 models
    41025 
    41026 > hide #36.4 models
    41027 
    41028 > hide #36.5 models
    41029 
    41030 > select add #36.6
    41031 
    41032 1094 atoms, 1122 bonds, 130 residues, 1 model selected 
    41033 Alignment identifier is 36.6/X 
    41034 
    41035 > select clear
    41036 
    41037 > select #36.6/X:33
    41038 
    41039 8 atoms, 7 bonds, 1 residue, 1 model selected 
    41040 
    41041 > select #36.6/X:33-90
    41042 
    41043 482 atoms, 496 bonds, 58 residues, 1 model selected 
    41044 
    41045 > hide sel cartoons
    41046 
    41047 > hide #!33 models
    41048 
    41049 > select clear
    41050 
    41051 [Repeated 1 time(s)]Drag select of 428 residues 
    41052 
    41053 > save /Users/shoichitachiyama/Desktop/PflC-PflD_correlation.pdb selectedOnly
    41054 > true
    41055 
    41056 > select clear
    41057 
    41058 [Repeated 1 time(s)]
    41059 
    41060 > show #!33 models
    41061 
    41062 > hide #!36 models
    41063 
    41064 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    41065 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    41066 > refinment/For-PflCD/For_correlation/PflC-PflD_correlation.pdb"
    41067 
    41068 Chain information for PflC-PflD_correlation.pdb 
    41069 --- 
    41070 Chain | Description 
    41071 37.1/X | No description available 
    41072 37.2/c | No description available 
    41073  
    41074 
    41075 > combine #37
    41076 
    41077 > ui tool show "Fit in Map"
    41078 
    41079 > hide #!37 models
    41080 
    41081 > show #!37 models
    41082 
    41083 The cached device pixel ratio value was stale on window expose. Please file a
    41084 QTBUG which explains how to reproduce. 
    41085 
    41086 [Repeated 1 time(s)]Opened combination map 10 as #39, grid size 42,39,48,
    41087 pixel 3.33, shown at level 0.0506, step 1, values float32 
    41088 
    41089 > fitmap #38 inMap #33 resolution 10 metric correlation
    41090 
    41091 Fit map combination map 10 in map Polished-PflCD_single.mrc using 2607 points 
    41092 correlation = 0.8562, correlation about mean = 0.4646, overlap = 17.28 
    41093 steps = 80, shift = 4.98, angle = 8.4 degrees 
    41094  
    41095 Position of combination map 10 (#39) relative to Polished-PflCD_single.mrc
    41096 (#33) coordinates: 
    41097 Matrix rotation and translation 
    41098 0.99274857 -0.11124388 0.04555301 8.94210763 
    41099 0.11465872 0.99010784 -0.08086926 -6.41782952 
    41100 -0.03610619 0.08550589 0.99568323 -5.68708707 
    41101 Axis 0.56938774 0.27946328 0.77310923 
    41102 Axis point 60.37593490 82.07118066 0.00000000 
    41103 Rotation angle (degrees) 8.40098598 
    41104 Shift along axis -1.09876073 
    41105  
    41106 Average map value = 0.02984 for 3466 atoms, 138 outside contour 
    41107 
    41108 > hide #!37 models
    41109 
    41110 > split #38
    41111 
    41112 Split combination (#38) into 2 models 
    41113 Chain information for combination X #38.1 
    41114 --- 
    41115 Chain | Description 
    41116 X | No description available 
    41117  
    41118 Chain information for combination c #38.2 
    41119 --- 
    41120 Chain | Description 
    41121 c | No description available 
    41122  
    41123 
    41124 > select add #38.2
    41125 
    41126 2854 atoms, 2914 bonds, 356 residues, 1 model selected 
    41127 
    41128 > color sel #7b80ffff
    41129 
    41130 > select subtract #38.2
    41131 
    41132 Nothing selected 
    41133 
    41134 > select add #38.1
    41135 
    41136 612 atoms, 625 bonds, 72 residues, 1 model selected 
    41137 
    41138 > color sel #adffc1ff
    41139 
    41140 > select clear
    41141 
    41142 > volume #33 level 0.008475
    41143 
    41144 > volume #33 level 0.00102
    41145 
    41146 > save /Users/shoichitachiyama/Desktop/PflC-PflD.png supersample 2
    41147 > transparentBackground true
    41148 
    41149 > hide #!38 models
    41150 
    41151 > hide #!33 models
    41152 
    41153 > show #!33 models
    41154 
    41155 > hide #!33 models
    41156 
    41157 > show #!34 models
    41158 
    41159 > show #!35 models
    41160 
    41161 > hide #!34 models
    41162 
    41163 > show #!38 models
    41164 
    41165 > hide #!38 models
    41166 
    41167 > show #!38 models
    41168 
    41169 > hide #!38 models
    41170 
    41171 > show #!38 models
    41172 
    41173 > show #!37 models
    41174 
    41175 > hide #!37 models
    41176 
    41177 > show #!36 models
    41178 
    41179 > hide #36.6 models
    41180 
    41181 > hide #36.7 models
    41182 
    41183 > hide #!38 models
    41184 
    41185 > show #36.1 models
    41186 
    41187 > show #36.2 models
    41188 
    41189 > show #36.3 models
    41190 
    41191 > show #36.4 models
    41192 
    41193 > show #36.5 models
    41194 
    41195 > select add #36.1
    41196 
    41197 1021 atoms, 1038 bonds, 123 residues, 1 model selected 
    41198 
    41199 > select add #36.2
    41200 
    41201 2052 atoms, 2085 bonds, 247 residues, 2 models selected 
    41202 
    41203 > select add #36.3
    41204 
    41205 3119 atoms, 3179 bonds, 374 residues, 3 models selected 
    41206 
    41207 > select add #36.4
    41208 
    41209 4182 atoms, 4259 bonds, 502 residues, 4 models selected 
    41210 
    41211 > select add #36.5
    41212 
    41213 5249 atoms, 5342 bonds, 631 residues, 5 models selected 
    41214 
    41215 > save /Users/shoichitachiyama/Desktop/Cage_arch_single.pdb selectedOnly true
    41216 
    41217 > select clear
    41218 
    41219 [Repeated 1 time(s)]
    41220 
    41221 > hide #!36 models
    41222 
    41223 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    41224 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    41225 > refinment/For-PflCD/For_correlation/Cage_arch_single.pdb"
    41226 
    41227 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    41228 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-refinment/For-
    41229 PflCD/For_correlation/Cage_arch_single.pdb 
    41230 --- 
    41231 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    41232 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    41233 42 
    41234 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    41235 8 
    41236 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    41237 1 7 
    41238 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    41239 1 3 
    41240 150 messages similar to the above omitted 
    41241  
    41242 Chain information for Cage_arch_single.pdb 
    41243 --- 
    41244 Chain | Description 
    41245 40.1/J | No description available 
    41246 40.2/K | No description available 
    41247 40.3/L | No description available 
    41248 40.4/V | No description available 
    41249 40.5/W | No description available 
    41250  
    41251 
    41252 Cell requested for row 35 is out of bounds for table with 46 rows! Resizing
    41253 table model. 
    41254 
    41255 > show #!24 models
    41256 
    41257 > hide #40.1 models
    41258 
    41259 > show #40.1 models
    41260 
    41261 > hide #40.1 models
    41262 
    41263 > show #40.1 models
    41264 
    41265 > color #40.1 #20e0ffff
    41266 
    41267 > hide #40.4 models
    41268 
    41269 > show #40.4 models
    41270 
    41271 > color #40.4 #20e0ffff
    41272 
    41273 > hide #40.2 models
    41274 
    41275 > show #40.2 models
    41276 
    41277 > color #40.2 #0b6dffff
    41278 
    41279 > color #40.5 #0b6dffff
    41280 
    41281 > color #40.3 #adffc1ff
    41282 
    41283 > hide #!24 models
    41284 
    41285 > combine #40
    41286 
    41287 > hide #!40 models
    41288 
    41289 Opened combination map 10 as #42, grid size 38,53,56, pixel 3.33, shown at
    41290 level 0.0458, step 1, values float32 
    41291 
    41292 > fitmap #41 inMap #35 resolution 10 metric correlation
    41293 
    41294 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41295 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41296 steps = 72, shift = 5.32, angle = 3.33 degrees 
    41297  
    41298 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41299 coordinates: 
    41300 Matrix rotation and translation 
    41301 0.99870695 -0.04614412 -0.02133420 10.32762731 
    41302 0.04672537 0.99852640 0.02760031 -26.24679973 
    41303 0.02002917 -0.02856147 0.99939135 -1.58990356 
    41304 Axis -0.48354610 -0.35613357 0.79959493 
    41305 Axis point 545.82748063 240.81579688 0.00000000 
    41306 Rotation angle (degrees) 3.32920138 
    41307 Shift along axis 3.08220380 
    41308  
    41309 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41310 
    41311 > fitmap #41 inMap #35 resolution 10 metric correlation
    41312 
    41313 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41314 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.75 
    41315 steps = 48, shift = 0.05, angle = 0.0501 degrees 
    41316  
    41317 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41318 coordinates: 
    41319 Matrix rotation and translation 
    41320 0.99873977 -0.04552554 -0.02112587 10.16347165 
    41321 0.04608967 0.99857148 0.02703206 -25.86218474 
    41322 0.01986504 -0.02797168 0.99941131 -1.65252969 
    41323 Axis -0.48058800 -0.35815276 0.80047596 
    41324 Axis point 544.83671207 240.41933412 0.00000000 
    41325 Rotation angle (degrees) 3.28056932 
    41326 Shift along axis 3.05535998 
    41327  
    41328 Average map value = 0.03088 for 5249 atoms, 743 outside contour 
    41329 
    41330 > fitmap #41 inMap #35 resolution 10 metric correlation
    41331 
    41332 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41333 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41334 steps = 28, shift = 0.0466, angle = 0.0465 degrees 
    41335  
    41336 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41337 coordinates: 
    41338 Matrix rotation and translation 
    41339 0.99871133 -0.04607228 -0.02128416 10.30393269 
    41340 0.04665207 0.99852989 0.02759786 -26.21997239 
    41341 0.01998138 -0.02855525 0.99939249 -1.57782840 
    41342 Axis -0.48411769 -0.35576619 0.79941259 
    41343 Axis point 546.14127084 240.71974845 0.00000000 
    41344 Rotation angle (degrees) 3.32475180 
    41345 Shift along axis 3.07852771 
    41346  
    41347 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41348 
    41349 > fitmap #41 inMap #35 resolution 10 metric correlation
    41350 
    41351 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41352 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.74 
    41353 steps = 28, shift = 0.0332, angle = 0.0229 degrees 
    41354  
    41355 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41356 coordinates: 
    41357 Matrix rotation and translation 
    41358 0.99871967 -0.04586270 -0.02134548 10.28568035 
    41359 0.04643765 0.99854895 0.02726791 -26.04076667 
    41360 0.02006392 -0.02822424 0.99940024 -1.66680369 
    41361 Axis -0.48093447 -0.35888334 0.79994049 
    41362 Axis point 544.61451298 241.21362930 0.00000000 
    41363 Rotation angle (degrees) 3.30734490 
    41364 Shift along axis 3.06551528 
    41365  
    41366 Average map value = 0.03088 for 5249 atoms, 745 outside contour 
    41367 
    41368 > fitmap #41 inMap #35 resolution 10 metric correlation
    41369 
    41370 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41371 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.75 
    41372 steps = 44, shift = 0.0078, angle = 0.0237 degrees 
    41373  
    41374 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41375 coordinates: 
    41376 Matrix rotation and translation 
    41377 0.99873362 -0.04569750 -0.02104485 10.17702551 
    41378 0.04625949 0.99856342 0.02704007 -25.92640893 
    41379 0.01977895 -0.02797935 0.99941280 -1.62205828 
    41380 Axis -0.47979568 -0.35600312 0.80190890 
    41381 Axis point 544.45356004 239.59996732 0.00000000 
    41382 Rotation angle (degrees) 3.28693076 
    41383 Shift along axis 3.04624646 
    41384  
    41385 Average map value = 0.03088 for 5249 atoms, 743 outside contour 
    41386 
    41387 > fitmap #41 inMap #35 resolution 10 metric correlation
    41388 
    41389 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41390 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.74 
    41391 steps = 40, shift = 0.00396, angle = 0.0133 degrees 
    41392  
    41393 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41394 coordinates: 
    41395 Matrix rotation and translation 
    41396 0.99873019 -0.04569884 -0.02120454 10.21608250 
    41397 0.04626865 0.99855842 0.02720834 -25.97226518 
    41398 0.01993058 -0.02815489 0.99940486 -1.63858169 
    41399 Axis -0.48159776 -0.35782929 0.80001362 
    41400 Axis point 545.14877699 240.68089744 0.00000000 
    41401 Rotation angle (degrees) 3.29510322 
    41402 Shift along axis 3.06270699 
    41403  
    41404 Average map value = 0.03088 for 5249 atoms, 745 outside contour 
    41405 
    41406 > fitmap #41 inMap #35 resolution 10 metric correlation
    41407 
    41408 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41409 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41410 steps = 40, shift = 0.0295, angle = 0.00651 degrees 
    41411  
    41412 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41413 coordinates: 
    41414 Matrix rotation and translation 
    41415 0.99872620 -0.04579540 -0.02118378 10.21798131 
    41416 0.04636569 0.99855244 0.02726245 -26.04302015 
    41417 0.01990463 -0.02820992 0.99940383 -1.61465143 
    41418 Axis -0.48174761 -0.35683070 0.80036935 
    41419 Axis point 545.50113893 240.33009133 0.00000000 
    41420 Rotation angle (degrees) 3.30057793 
    41421 Shift along axis 3.07814345 
    41422  
    41423 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41424 
    41425 > fitmap #41 inMap #35 resolution 10 metric correlation
    41426 
    41427 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41428 correlation = 0.7956, correlation about mean = 0.4572, overlap = 26.75 
    41429 steps = 44, shift = 0.0312, angle = 0.0124 degrees 
    41430  
    41431 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41432 coordinates: 
    41433 Matrix rotation and translation 
    41434 0.99873308 -0.04567366 -0.02112243 10.19099109 
    41435 0.04623894 0.99856284 0.02709625 -25.93458566 
    41436 0.01985449 -0.02803860 0.99940964 -1.63536141 
    41437 Axis -0.48049038 -0.35710648 0.80100184 
    41438 Axis point 544.75360054 240.15232394 0.00000000 
    41439 Rotation angle (degrees) 3.28906721 
    41440 Shift along axis 3.05480800 
    41441  
    41442 Average map value = 0.03088 for 5249 atoms, 744 outside contour 
    41443 
    41444 > fitmap #41 inMap #35 resolution 10 metric correlation
    41445 
    41446 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41447 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41448 steps = 72, shift = 5.32, angle = 3.33 degrees 
    41449  
    41450 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41451 coordinates: 
    41452 Matrix rotation and translation 
    41453 0.99870695 -0.04614412 -0.02133420 10.32762731 
    41454 0.04672537 0.99852640 0.02760031 -26.24679973 
    41455 0.02002917 -0.02856147 0.99939135 -1.58990356 
    41456 Axis -0.48354610 -0.35613357 0.79959493 
    41457 Axis point 545.82748063 240.81579688 0.00000000 
    41458 Rotation angle (degrees) 3.32920138 
    41459 Shift along axis 3.08220380 
    41460  
    41461 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41462 
    41463 > fitmap #41 inMap #35 resolution 10 metric correlation
    41464 
    41465 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41466 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41467 steps = 72, shift = 5.32, angle = 3.33 degrees 
    41468  
    41469 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41470 coordinates: 
    41471 Matrix rotation and translation 
    41472 0.99870695 -0.04614412 -0.02133420 10.32762731 
    41473 0.04672537 0.99852640 0.02760031 -26.24679973 
    41474 0.02002917 -0.02856147 0.99939135 -1.58990356 
    41475 Axis -0.48354610 -0.35613357 0.79959493 
    41476 Axis point 545.82748063 240.81579688 0.00000000 
    41477 Rotation angle (degrees) 3.32920138 
    41478 Shift along axis 3.08220380 
    41479  
    41480 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41481 
    41482 > fitmap #41 inMap #35 resolution 10 metric correlation
    41483 
    41484 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41485 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41486 steps = 72, shift = 5.32, angle = 3.33 degrees 
    41487  
    41488 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41489 coordinates: 
    41490 Matrix rotation and translation 
    41491 0.99870695 -0.04614412 -0.02133420 10.32762731 
    41492 0.04672537 0.99852640 0.02760031 -26.24679973 
    41493 0.02002917 -0.02856147 0.99939135 -1.58990356 
    41494 Axis -0.48354610 -0.35613357 0.79959493 
    41495 Axis point 545.82748063 240.81579688 0.00000000 
    41496 Rotation angle (degrees) 3.32920138 
    41497 Shift along axis 3.08220380 
    41498  
    41499 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41500 
    41501 > hide #!35 models
    41502 
    41503 > show #!35 models
    41504 
    41505 > show #!36 models
    41506 
    41507 > hide #!36 models
    41508 
    41509 > show #!33 models
    41510 
    41511 > hide #!35 models
    41512 
    41513 > hide #41 models
    41514 
    41515 > show #!38 models
    41516 
    41517 > show #!37 models
    41518 
    41519 > close #38
    41520 
    41521 > combine #37
    41522 
    41523 > hide #!37 models
    41524 
    41525 > show #!37 models
    41526 
    41527 > fitmap #38 inMap #33 resolution 10 metric correlation
    41528 
    41529 Fit map combination map 10 in map Polished-PflCD_single.mrc using 2607 points 
    41530 correlation = 0.8562, correlation about mean = 0.4646, overlap = 17.28 
    41531 steps = 80, shift = 4.98, angle = 8.4 degrees 
    41532  
    41533 Position of combination map 10 (#39) relative to Polished-PflCD_single.mrc
    41534 (#33) coordinates: 
    41535 Matrix rotation and translation 
    41536 0.99274857 -0.11124388 0.04555301 8.94210763 
    41537 0.11465872 0.99010784 -0.08086926 -6.41782952 
    41538 -0.03610619 0.08550589 0.99568323 -5.68708707 
    41539 Axis 0.56938774 0.27946328 0.77310923 
    41540 Axis point 60.37593490 82.07118066 0.00000000 
    41541 Rotation angle (degrees) 8.40098598 
    41542 Shift along axis -1.09876073 
    41543  
    41544 Average map value = 0.02984 for 3466 atoms, 138 outside contour 
    41545 
    41546 > split #38
    41547 
    41548 Split combination (#38) into 2 models 
    41549 Chain information for combination X #38.1 
    41550 --- 
    41551 Chain | Description 
    41552 X | No description available 
    41553  
    41554 Chain information for combination c #38.2 
    41555 --- 
    41556 Chain | Description 
    41557 c | No description available 
    41558  
    41559 
    41560 > color #38.1 #adffc1ff
    41561 
    41562 > color #38.2 #7b80ffff
    41563 
    41564 > save /Users/shoichitachiyama/Desktop/PflC-PflD.png supersample 2
    41565 > transparentBackground true
    41566 
    41567 [Repeated 1 time(s)]
    41568 
    41569 > hide #!33 models
    41570 
    41571 > hide #!37 models
    41572 
    41573 > show #!35 models
    41574 
    41575 > show #!37 models
    41576 
    41577 > hide #!37 models
    41578 
    41579 > show #!37 models
    41580 
    41581 > hide #!38 models
    41582 
    41583 > hide #!37 models
    41584 
    41585 > show #41 models
    41586 
    41587 > show #!40 models
    41588 
    41589 > hide #41 models
    41590 
    41591 > hide #!40 models
    41592 
    41593 > show #!40 models
    41594 
    41595 > hide #!40 models
    41596 
    41597 > show #!40 models
    41598 
    41599 > hide #!40 models
    41600 
    41601 > show #41 models
    41602 
    41603 > show #!40 models
    41604 
    41605 > hide #41 models
    41606 
    41607 > show #41 models
    41608 
    41609 > hide #!40 models
    41610 
    41611 > show #!40 models
    41612 
    41613 > fitmap #41 inMap #35 resolution 10 metric correlation
    41614 
    41615 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41616 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41617 steps = 72, shift = 5.32, angle = 3.33 degrees 
    41618  
    41619 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41620 coordinates: 
    41621 Matrix rotation and translation 
    41622 0.99870695 -0.04614412 -0.02133420 10.32762731 
    41623 0.04672537 0.99852640 0.02760031 -26.24679973 
    41624 0.02002917 -0.02856147 0.99939135 -1.58990356 
    41625 Axis -0.48354610 -0.35613357 0.79959493 
    41626 Axis point 545.82748063 240.81579688 0.00000000 
    41627 Rotation angle (degrees) 3.32920138 
    41628 Shift along axis 3.08220380 
    41629  
    41630 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41631 
    41632 > fitmap #41 inMap #35 resolution 10 metric correlation
    41633 
    41634 Fit map combination map 10 in map Single-Cage-arch.mrc using 4180 points 
    41635 correlation = 0.7956, correlation about mean = 0.4574, overlap = 26.74 
    41636 steps = 72, shift = 5.32, angle = 3.33 degrees 
    41637  
    41638 Position of combination map 10 (#42) relative to Single-Cage-arch.mrc (#35)
    41639 coordinates: 
    41640 Matrix rotation and translation 
    41641 0.99870695 -0.04614412 -0.02133420 10.32762731 
    41642 0.04672537 0.99852640 0.02760031 -26.24679973 
    41643 0.02002917 -0.02856147 0.99939135 -1.58990356 
    41644 Axis -0.48354610 -0.35613357 0.79959493 
    41645 Axis point 545.82748063 240.81579688 0.00000000 
    41646 Rotation angle (degrees) 3.32920138 
    41647 Shift along axis 3.08220380 
    41648  
    41649 Average map value = 0.03088 for 5249 atoms, 746 outside contour 
    41650 
    41651 > save /Users/shoichitachiyama/Desktop/For_Cage_PflCD.cxs includeMaps true
    41652 
    41653 ——— End of log from Sat Jul 12 20:19:26 2025 ———
    41654 
    41655 opened ChimeraX session 
    41656 Showing Polished_Cage2 gaussian.seg - 14 regions, 14 surfaces 
    41657 
    41658 > hide #!25 models
    41659 
    41660 > show #!1 models
    41661 
    41662 > hide #!1 models
    41663 
    41664 > close session
    41665 
    41666 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    41667 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    41668 > refinment/For-Chimera-PflAB/Rev-CJFlgYPlfAB-2.1A.mrc"
    41669 
    41670 Opened Rev-CJFlgYPlfAB-2.1A.mrc as #1, grid size 200,200,200, pixel 2.14,
    41671 shown at level 0.0478, step 1, values float32 
    41672 
    41673 > volume #1 level 0.007113
    41674 
    41675 > ui tool show "Segment Map"
    41676 
    41677 Segmenting Rev-CJFlgYPlfAB-2.1A.mrc, density threshold 0.007113 
    41678 Showing 628 region surfaces 
    41679 38016 watershed regions, grouped to 628 regions 
    41680 Showing Rev-CJFlgYPlfAB-2.1A.seg - 628 regions, 628 surfaces 
    41681 
    41682 > select #2.121
    41683 
    41684 1 model selected 
    41685 
    41686 > select add #2.11
    41687 
    41688 2 models selected 
    41689 
    41690 > select add #2.105
    41691 
    41692 3 models selected 
    41693 
    41694 > select add #2.425
    41695 
    41696 4 models selected 
    41697 
    41698 > select add #2.396
    41699 
    41700 5 models selected 
    41701 
    41702 > select add #2.228
    41703 
    41704 6 models selected 
    41705 
    41706 > select add #2.22
    41707 
    41708 7 models selected 
    41709 
    41710 > select add #2.111
    41711 
    41712 8 models selected 
    41713 
    41714 > select add #2.39
    41715 
    41716 9 models selected 
    41717 
    41718 > select add #2.137
    41719 
    41720 10 models selected 
    41721 
    41722 > select add #2.290
    41723 
    41724 11 models selected 
    41725 
    41726 > select add #2.83
    41727 
    41728 12 models selected 
    41729 
    41730 > select add #2.60
    41731 
    41732 13 models selected 
    41733 
    41734 > select add #2.1
    41735 
    41736 14 models selected 
    41737 
    41738 > select add #2.210
    41739 
    41740 15 models selected 
    41741 
    41742 > select add #2.158
    41743 
    41744 16 models selected 
    41745 
    41746 > select add #2.17
    41747 
    41748 17 models selected 
    41749 
    41750 > select add #2.85
    41751 
    41752 18 models selected 
    41753 
    41754 > select add #2.120
    41755 
    41756 19 models selected 
    41757 
    41758 > select add #2.353
    41759 
    41760 20 models selected 
    41761 
    41762 > select add #2.243
    41763 
    41764 21 models selected 
    41765 
    41766 > select add #2.343
    41767 
    41768 22 models selected 
    41769 
    41770 > select add #2.173
    41771 
    41772 23 models selected 
    41773 
    41774 > select subtract #2.173
    41775 
    41776 22 models selected 
    41777 
    41778 > select add #2.147
    41779 
    41780 23 models selected 
    41781 
    41782 > select add #2.303
    41783 
    41784 24 models selected 
    41785 
    41786 > select add #2.173
    41787 
    41788 25 models selected 
    41789 
    41790 > select add #2.87
    41791 
    41792 26 models selected 
    41793 
    41794 > select add #2.172
    41795 
    41796 27 models selected 
    41797 
    41798 > select add #2.463
    41799 
    41800 28 models selected 
    41801 
    41802 > select add #2.25
    41803 
    41804 29 models selected 
    41805 
    41806 > select add #2.86
    41807 
    41808 30 models selected 
    41809 
    41810 > select add #2.4
    41811 
    41812 31 models selected 
    41813 
    41814 > select add #2.19
    41815 
    41816 32 models selected 
    41817 
    41818 > select add #2.170
    41819 
    41820 33 models selected 
    41821 
    41822 > select add #2.441
    41823 
    41824 34 models selected 
    41825 
    41826 > select add #2.23
    41827 
    41828 35 models selected 
    41829 
    41830 > select add #2.95
    41831 
    41832 36 models selected 
    41833 
    41834 > select add #2.144
    41835 
    41836 37 models selected 
    41837 
    41838 > select add #2.315
    41839 
    41840 38 models selected 
    41841 
    41842 > select add #2.313
    41843 
    41844 39 models selected 
    41845 
    41846 > hide #!1 models
    41847 
    41848 > select add #2.129
    41849 
    41850 40 models selected 
    41851 
    41852 > select add #2.54
    41853 
    41854 41 models selected 
    41855 
    41856 > select add #2.40
    41857 
    41858 42 models selected 
    41859 
    41860 > select add #2.55
    41861 
    41862 43 models selected 
    41863 
    41864 > select add #2.88
    41865 
    41866 44 models selected 
    41867 
    41868 > select add #2.27
    41869 
    41870 45 models selected 
    41871 
    41872 > select add #2.116
    41873 
    41874 46 models selected 
    41875 
    41876 > select add #2.457
    41877 
    41878 47 models selected 
    41879 
    41880 > select add #2.10
    41881 
    41882 48 models selected 
    41883 
    41884 > select add #2.208
    41885 
    41886 49 models selected 
    41887 
    41888 > select add #2.104
    41889 
    41890 50 models selected 
    41891 
    41892 > select add #2.250
    41893 
    41894 51 models selected 
    41895 
    41896 > select add #2.234
    41897 
    41898 52 models selected 
    41899 
    41900 > select add #2.84
    41901 
    41902 53 models selected 
    41903 
    41904 > select add #2.282
    41905 
    41906 54 models selected 
    41907 
    41908 > select add #2.5
    41909 
    41910 55 models selected 
    41911 
    41912 > select add #2.14
    41913 
    41914 56 models selected 
    41915 
    41916 > select add #2.275
    41917 
    41918 57 models selected 
    41919 
    41920 > select add #2.185
    41921 
    41922 58 models selected 
    41923 
    41924 > select add #2.75
    41925 
    41926 59 models selected 
    41927 
    41928 > select add #2.108
    41929 
    41930 60 models selected 
    41931 
    41932 > select add #2.52
    41933 
    41934 61 models selected 
    41935 
    41936 > select add #2.126
    41937 
    41938 62 models selected 
    41939 
    41940 > select add #2.68
    41941 
    41942 63 models selected 
    41943 
    41944 > select add #2.59
    41945 
    41946 64 models selected 
    41947 
    41948 > select add #2.112
    41949 
    41950 65 models selected 
    41951 
    41952 > select add #2.221
    41953 
    41954 66 models selected 
    41955 
    41956 > select add #2.26
    41957 
    41958 67 models selected 
    41959 
    41960 > select add #2.139
    41961 
    41962 68 models selected 
    41963 
    41964 > select add #2.179
    41965 
    41966 69 models selected 
    41967 
    41968 > select add #2.207
    41969 
    41970 70 models selected 
    41971 
    41972 > select add #2.347
    41973 
    41974 71 models selected 
    41975 
    41976 > select add #2.56
    41977 
    41978 72 models selected 
    41979 
    41980 > select add #2.29
    41981 
    41982 73 models selected 
    41983 
    41984 > select add #2.361
    41985 
    41986 74 models selected 
    41987 
    41988 > select add #2.163
    41989 
    41990 75 models selected 
    41991 
    41992 > select add #2.321
    41993 
    41994 76 models selected 
    41995 
    41996 > select add #2.15
    41997 
    41998 77 models selected 
    41999 
    42000 > select add #2.141
    42001 
    42002 78 models selected 
    42003 
    42004 > select add #2.154
    42005 
    42006 79 models selected 
    42007 
    42008 > select add #2.198
    42009 
    42010 80 models selected 
    42011 
    42012 > select add #2.248
    42013 
    42014 81 models selected 
    42015 
    42016 > select add #2.251
    42017 
    42018 82 models selected 
    42019 
    42020 > select add #2.7
    42021 
    42022 83 models selected 
    42023 
    42024 > select add #2.306
    42025 
    42026 84 models selected 
    42027 
    42028 > select add #2.316
    42029 
    42030 85 models selected 
    42031 
    42032 > select subtract #2.316
    42033 
    42034 84 models selected 
    42035 
    42036 > select add #2.301
    42037 
    42038 85 models selected 
    42039 
    42040 > select add #2.316
    42041 
    42042 86 models selected 
    42043 
    42044 > select add #2.12
    42045 
    42046 87 models selected 
    42047 
    42048 > select add #2.162
    42049 
    42050 88 models selected 
    42051 
    42052 > select add #2.49
    42053 
    42054 89 models selected 
    42055 
    42056 > select add #2.182
    42057 
    42058 90 models selected 
    42059 
    42060 > select add #2.258
    42061 
    42062 91 models selected 
    42063 
    42064 > select add #2.267
    42065 
    42066 92 models selected 
    42067 
    42068 > select add #2.36
    42069 
    42070 93 models selected 
    42071 
    42072 > select subtract #2.36
    42073 
    42074 92 models selected 
    42075 
    42076 > select add #2.136
    42077 
    42078 93 models selected 
    42079 
    42080 > select add #2.94
    42081 
    42082 94 models selected 
    42083 
    42084 > select add #2.216
    42085 
    42086 95 models selected 
    42087 
    42088 > select add #2.36
    42089 
    42090 96 models selected 
    42091 
    42092 > select add #2.82
    42093 
    42094 97 models selected 
    42095 
    42096 > select add #2.194
    42097 
    42098 98 models selected 
    42099 
    42100 > select add #2.69
    42101 
    42102 99 models selected 
    42103 
    42104 > select add #2.195
    42105 
    42106 100 models selected 
    42107 
    42108 > select add #2.53
    42109 
    42110 101 models selected 
    42111 
    42112 > select add #2.100
    42113 
    42114 102 models selected 
    42115 
    42116 > select add #2.98
    42117 
    42118 103 models selected 
    42119 
    42120 > select add #2.80
    42121 
    42122 104 models selected 
    42123 
    42124 > select add #2.35
    42125 
    42126 105 models selected 
    42127 
    42128 > select add #2.410
    42129 
    42130 106 models selected 
    42131 
    42132 > select add #2.218
    42133 
    42134 107 models selected 
    42135 
    42136 > select add #2.357
    42137 
    42138 108 models selected 
    42139 
    42140 > select add #2.271
    42141 
    42142 109 models selected 
    42143 
    42144 > select add #2.435
    42145 
    42146 110 models selected 
    42147 
    42148 > select add #2.349
    42149 
    42150 111 models selected 
    42151 
    42152 > select add #2.493
    42153 
    42154 112 models selected 
    42155 
    42156 > select add #2.276
    42157 
    42158 113 models selected 
    42159 
    42160 > select add #2.272
    42161 
    42162 114 models selected 
    42163 
    42164 > select add #2.264
    42165 
    42166 115 models selected 
    42167 
    42168 > select add #2.18
    42169 
    42170 116 models selected 
    42171 
    42172 > select add #2.38
    42173 
    42174 117 models selected 
    42175 
    42176 > select add #2.399
    42177 
    42178 118 models selected 
    42179 
    42180 > select add #2.67
    42181 
    42182 119 models selected 
    42183 
    42184 > select add #2.134
    42185 
    42186 120 models selected 
    42187 
    42188 > select add #2.72
    42189 
    42190 121 models selected 
    42191 
    42192 > select add #2.43
    42193 
    42194 122 models selected 
    42195 
    42196 > select add #2.449
    42197 
    42198 123 models selected 
    42199 
    42200 > select add #2.184
    42201 
    42202 124 models selected 
    42203 
    42204 > select add #2.127
    42205 
    42206 125 models selected 
    42207 
    42208 > select add #2.192
    42209 
    42210 126 models selected 
    42211 
    42212 > select add #2.77
    42213 
    42214 127 models selected 
    42215 
    42216 > select add #2.151
    42217 
    42218 128 models selected 
    42219 
    42220 > select add #2.155
    42221 
    42222 129 models selected 
    42223 
    42224 > select add #2.78
    42225 
    42226 130 models selected 
    42227 
    42228 > select add #2.58
    42229 
    42230 131 models selected 
    42231 
    42232 > select add #2.246
    42233 
    42234 132 models selected 
    42235 
    42236 > select add #2.193
    42237 
    42238 133 models selected 
    42239 
    42240 > select add #2.235
    42241 
    42242 134 models selected 
    42243 
    42244 > select add #2.160
    42245 
    42246 135 models selected 
    42247 
    42248 > select add #2.142
    42249 
    42250 136 models selected 
    42251 
    42252 > select add #2.48
    42253 
    42254 137 models selected 
    42255 
    42256 > select add #2.226
    42257 
    42258 138 models selected 
    42259 
    42260 > select add #2.102
    42261 
    42262 139 models selected 
    42263 
    42264 > select add #2.62
    42265 
    42266 140 models selected 
    42267 
    42268 > select add #2.150
    42269 
    42270 141 models selected 
    42271 
    42272 > select add #2.103
    42273 
    42274 142 models selected 
    42275 
    42276 > select add #2.90
    42277 
    42278 143 models selected 
    42279 Drag select of 47328, 47 of 17728 triangles, 50570, 10 of 23168 triangles,
    42280 47408, 36 of 14584 triangles, 50525, 30 of 24132 triangles, 50457, 34 of 20492
    42281 triangles, 50382, 33 of 21380 triangles 
    42282 
    42283 > select add #2.93
    42284 
    42285 148 models selected 
    42286 
    42287 > select add #2.8
    42288 
    42289 149 models selected 
    42290 
    42291 > select add #2.96
    42292 
    42293 150 models selected 
    42294 
    42295 > select add #2.101
    42296 
    42297 151 models selected 
    42298 
    42299 > select add #2.51
    42300 
    42301 152 models selected 
    42302 
    42303 > select add #2.21
    42304 
    42305 153 models selected 
    42306 
    42307 > select add #2.24
    42308 
    42309 154 models selected 
    42310 
    42311 > select add #2.287
    42312 
    42313 155 models selected 
    42314 
    42315 > select add #2.61
    42316 
    42317 156 models selected 
    42318 
    42319 > select add #2.124
    42320 
    42321 157 models selected 
    42322 
    42323 > select add #2.119
    42324 
    42325 158 models selected 
    42326 
    42327 > select add #2.32
    42328 
    42329 159 models selected 
    42330 
    42331 > select add #2.125
    42332 
    42333 160 models selected 
    42334 
    42335 > select add #2.204
    42336 
    42337 161 models selected 
    42338 
    42339 > select subtract #2.204
    42340 
    42341 160 models selected 
    42342 
    42343 > select add #2.255
    42344 
    42345 161 models selected 
    42346 
    42347 > select add #2.204
    42348 
    42349 162 models selected 
    42350 
    42351 > select add #2.117
    42352 
    42353 163 models selected 
    42354 
    42355 > select subtract #2.117
    42356 
    42357 162 models selected 
    42358 
    42359 > select add #2.117
    42360 
    42361 163 models selected 
    42362 
    42363 > select add #2.175
    42364 
    42365 164 models selected 
    42366 
    42367 > select add #2.113
    42368 
    42369 165 models selected 
    42370 
    42371 > select add #2.262
    42372 
    42373 166 models selected 
    42374 
    42375 > select add #2.344
    42376 
    42377 167 models selected 
    42378 
    42379 > select add #2.376
    42380 
    42381 168 models selected 
    42382 
    42383 > select add #2.90
    42384 
    42385 169 models selected 
    42386 
    42387 > select add #2.169
    42388 
    42389 170 models selected 
    42390 
    42391 > select add #2.205
    42392 
    42393 171 models selected 
    42394 
    42395 > select add #2.308
    42396 
    42397 172 models selected 
    42398 
    42399 > select add #2.252
    42400 
    42401 173 models selected 
    42402 
    42403 > select add #2.281
    42404 
    42405 174 models selected 
    42406 
    42407 > select add #2.167
    42408 
    42409 175 models selected 
    42410 Drag select of 50372, 10 of 17540 triangles, 50387, 24 of 15784 triangles,
    42411 50187, 5 of 11000 triangles, 49741, 12 of 10360 triangles, 50750, 54 of 22704
    42412 triangles, 47396, 16 of 7912 triangles 
    42413 
    42414 > select subtract #2.167
    42415 
    42416 180 models selected 
    42417 
    42418 > select add #2.115
    42419 
    42420 181 models selected 
    42421 
    42422 > select add #2.164
    42423 
    42424 182 models selected 
    42425 
    42426 > select add #2.206
    42427 
    42428 183 models selected 
    42429 
    42430 > select add #2.232
    42431 
    42432 184 models selected 
    42433 
    42434 > select add #2.143
    42435 
    42436 185 models selected 
    42437 
    42438 > select add #2.214
    42439 
    42440 186 models selected 
    42441 
    42442 > select add #2.178
    42443 
    42444 187 models selected 
    42445 
    42446 > select add #2.259
    42447 
    42448 188 models selected 
    42449 
    42450 > select add #2.66
    42451 
    42452 189 models selected 
    42453 
    42454 > select add #2.202
    42455 
    42456 190 models selected 
    42457 
    42458 > select add #2.146
    42459 
    42460 191 models selected 
    42461 
    42462 > select add #2.199
    42463 
    42464 192 models selected 
    42465 
    42466 > select add #2.135
    42467 
    42468 193 models selected 
    42469 
    42470 > select add #2.63
    42471 
    42472 194 models selected 
    42473 
    42474 > select add #2.254
    42475 
    42476 195 models selected 
    42477 
    42478 > select add #2.16
    42479 
    42480 196 models selected 
    42481 
    42482 > select add #2.317
    42483 
    42484 197 models selected 
    42485 
    42486 > select add #2.168
    42487 
    42488 198 models selected 
    42489 
    42490 > select add #2.196
    42491 
    42492 199 models selected 
    42493 
    42494 > select add #2.132
    42495 
    42496 200 models selected 
    42497 
    42498 > select add #2.334
    42499 
    42500 201 models selected 
    42501 
    42502 > select add #2.392
    42503 
    42504 202 models selected 
    42505 
    42506 > select add #2.294
    42507 
    42508 203 models selected 
    42509 
    42510 > select add #2.318
    42511 
    42512 204 models selected 
    42513 
    42514 > select add #2.167
    42515 
    42516 205 models selected 
    42517 
    42518 > select add #2.291
    42519 
    42520 206 models selected 
    42521 
    42522 > select add #2.2
    42523 
    42524 207 models selected 
    42525 
    42526 > select add #2.176
    42527 
    42528 208 models selected 
    42529 
    42530 > select add #2.437
    42531 
    42532 209 models selected 
    42533 
    42534 > select add #2.46
    42535 
    42536 210 models selected 
    42537 
    42538 > select add #2.378
    42539 
    42540 211 models selected 
    42541 
    42542 > select add #2.398
    42543 
    42544 212 models selected 
    42545 
    42546 > select add #2.212
    42547 
    42548 213 models selected 
    42549 
    42550 > select add #2.231
    42551 
    42552 214 models selected 
    42553 
    42554 > select add #2.34
    42555 
    42556 215 models selected 
    42557 
    42558 > select add #2.419
    42559 
    42560 216 models selected 
    42561 
    42562 > select add #2.213
    42563 
    42564 217 models selected 
    42565 
    42566 > select add #2.340
    42567 
    42568 218 models selected 
    42569 
    42570 > select add #2.31
    42571 
    42572 219 models selected 
    42573 
    42574 > select add #2.13
    42575 
    42576 220 models selected 
    42577 
    42578 > select add #2.292
    42579 
    42580 221 models selected 
    42581 
    42582 > select add #2.330
    42583 
    42584 222 models selected 
    42585 
    42586 > select add #2.240
    42587 
    42588 223 models selected 
    42589 
    42590 > select add #2.106
    42591 
    42592 224 models selected 
    42593 
    42594 > select add #2.237
    42595 
    42596 225 models selected 
    42597 
    42598 > select add #2.30
    42599 
    42600 226 models selected 
    42601 
    42602 > select add #2.89
    42603 
    42604 227 models selected 
    42605 
    42606 > select add #2.33
    42607 
    42608 228 models selected 
    42609 
    42610 > select add #2.107
    42611 
    42612 229 models selected 
    42613 
    42614 > select add #2.42
    42615 
    42616 230 models selected 
    42617 
    42618 > select add #2.114
    42619 
    42620 231 models selected 
    42621 
    42622 > select add #2.439
    42623 
    42624 232 models selected 
    42625 
    42626 > select subtract #2.439
    42627 
    42628 231 models selected 
    42629 
    42630 > select add #2.300
    42631 
    42632 232 models selected 
    42633 
    42634 > select add #2.401
    42635 
    42636 233 models selected 
    42637 
    42638 > select add #2.265
    42639 
    42640 234 models selected 
    42641 
    42642 > select add #2.322
    42643 
    42644 235 models selected 
    42645 
    42646 > select add #2.293
    42647 
    42648 236 models selected 
    42649 
    42650 > select add #2.338
    42651 
    42652 237 models selected 
    42653 
    42654 > select add #2.358
    42655 
    42656 238 models selected 
    42657 
    42658 > select add #2.257
    42659 
    42660 239 models selected 
    42661 
    42662 > select add #2.331
    42663 
    42664 240 models selected 
    42665 
    42666 > select add #2.389
    42667 
    42668 241 models selected 
    42669 
    42670 > select add #2.201
    42671 
    42672 242 models selected 
    42673 
    42674 > select add #2.286
    42675 
    42676 243 models selected 
    42677 
    42678 > select add #2.450
    42679 
    42680 244 models selected 
    42681 
    42682 > select add #2.426
    42683 
    42684 245 models selected 
    42685 
    42686 > select add #2.203
    42687 
    42688 246 models selected 
    42689 
    42690 > select add #2.390
    42691 
    42692 247 models selected 
    42693 
    42694 > select add #2.138
    42695 
    42696 248 models selected 
    42697 
    42698 > select add #2.97
    42699 
    42700 249 models selected 
    42701 
    42702 > select add #2.152
    42703 
    42704 250 models selected 
    42705 
    42706 > select add #2.3
    42707 
    42708 251 models selected 
    42709 
    42710 > select add #2.45
    42711 
    42712 252 models selected 
    42713 
    42714 > select add #2.305
    42715 
    42716 253 models selected 
    42717 Drag select of 49779, 128 of 23888 triangles, 50669, 118 of 45648 triangles,
    42718 50340, 22 of 13236 triangles, 50619, 47 of 23528 triangles, 50176, 35 of 3020
    42719 triangles 
    42720 
    42721 > select subtract #2.244
    42722 
    42723 257 models selected 
    42724 
    42725 > select add #2.385
    42726 
    42727 258 models selected 
    42728 
    42729 > select add #2.244
    42730 
    42731 259 models selected 
    42732 
    42733 > select add #2.323
    42734 
    42735 260 models selected 
    42736 
    42737 > select add #2.372
    42738 
    42739 261 models selected 
    42740 
    42741 > select add #2.229
    42742 
    42743 262 models selected 
    42744 
    42745 > select add #2.110
    42746 
    42747 263 models selected 
    42748 
    42749 > select add #2.571
    42750 
    42751 264 models selected 
    42752 
    42753 > select add #2.79
    42754 
    42755 265 models selected 
    42756 
    42757 > select add #2.65
    42758 
    42759 266 models selected 
    42760 
    42761 > select add #2.363
    42762 
    42763 267 models selected 
    42764 
    42765 > select add #2.159
    42766 
    42767 268 models selected 
    42768 
    42769 > select add #2.238
    42770 
    42771 269 models selected 
    42772 
    42773 > select add #2.365
    42774 
    42775 270 models selected 
    42776 
    42777 > select add #2.118
    42778 
    42779 271 models selected 
    42780 Drag select of 50643, 144 of 97072 triangles, 50569, 33 of 22748 triangles 
    42781 
    42782 > select add #2.241
    42783 
    42784 274 models selected 
    42785 
    42786 > select add #2.391
    42787 
    42788 275 models selected 
    42789 
    42790 > select subtract #2.391
    42791 
    42792 274 models selected 
    42793 Drag select of 50680, 67 of 32524 triangles, 49971, 76 of 15912 triangles,
    42794 49036, 21 of 4700 triangles 
    42795 
    42796 > select subtract #2.47
    42797 
    42798 276 models selected 
    42799 
    42800 > select add #2.81
    42801 
    42802 277 models selected 
    42803 
    42804 > select add #2.47
    42805 
    42806 278 models selected 
    42807 
    42808 > select add #2.165
    42809 
    42810 279 models selected 
    42811 
    42812 > select add #2.197
    42813 
    42814 280 models selected 
    42815 
    42816 > select add #2.76
    42817 
    42818 281 models selected 
    42819 
    42820 > select add #2.71
    42821 
    42822 282 models selected 
    42823 
    42824 > select add #2.74
    42825 
    42826 283 models selected 
    42827 
    42828 > select add #2.145
    42829 
    42830 284 models selected 
    42831 
    42832 > select add #2.233
    42833 
    42834 285 models selected 
    42835 
    42836 > select add #2.370
    42837 
    42838 286 models selected 
    42839 
    42840 > select add #2.386
    42841 
    42842 287 models selected 
    42843 
    42844 > select add #2.487
    42845 
    42846 288 models selected 
    42847 Grouped 288 regions 
    42848 
    42849 The cached device pixel ratio value was stale on window expose. Please file a
    42850 QTBUG which explains how to reproduce. 
    42851 
    42852 > select clear
    42853 
    42854 > select #2.1
    42855 
    42856 1 model selected 
    42857 
    42858 > select add #2.266
    42859 
    42860 2 models selected 
    42861 
    42862 > select add #2.411
    42863 
    42864 3 models selected 
    42865 
    42866 > select add #2.400
    42867 
    42868 4 models selected 
    42869 
    42870 > select add #2.222
    42871 
    42872 5 models selected 
    42873 
    42874 > select add #2.603
    42875 
    42876 6 models selected 
    42877 
    42878 > select add #2.384
    42879 
    42880 7 models selected 
    42881 
    42882 > select add #2.345
    42883 
    42884 8 models selected 
    42885 
    42886 > select add #2.403
    42887 
    42888 9 models selected 
    42889 
    42890 > select add #2.373
    42891 
    42892 10 models selected 
    42893 
    42894 > select add #2.310
    42895 
    42896 11 models selected 
    42897 
    42898 > select add #2.288
    42899 
    42900 12 models selected 
    42901 
    42902 > select add #2.274
    42903 
    42904 13 models selected 
    42905 
    42906 > select add #2.354
    42907 
    42908 14 models selected 
    42909 
    42910 > select add #2.408
    42911 
    42912 15 models selected 
    42913 Grouped 15 regions 
    42914 
    42915 > select clear
    42916 
    42917 > select #2.1
    42918 
    42919 1 model selected 
    42920 
    42921 > select #2.1
    42922 
    42923 1 model selected 
    42924 
    42925 > select add #2.355
    42926 
    42927 2 models selected 
    42928 
    42929 > select #2.1
    42930 
    42931 1 model selected 
    42932 
    42933 > select clear
    42934 
    42935 > select #2.1
    42936 
    42937 1 model selected 
    42938 
    42939 > select add #2.355
    42940 
    42941 2 models selected 
    42942 
    42943 > select add #2.609
    42944 
    42945 3 models selected 
    42946 
    42947 > select add #2.387
    42948 
    42949 4 models selected 
    42950 Grouped 4 regions 
    42951 
    42952 > select clear
    42953 
    42954 > select #2.1
    42955 
    42956 1 model selected 
    42957 Opened Rev-CJFlgYPlfAB-2.1A_imasked as #3, grid size 200,200,200, pixel 2.14,
    42958 shown at step 1, values float32 
    42959 
    42960 > hide #!2 models
    42961 
    42962 > show #!2 models
    42963 
    42964 The cached device pixel ratio value was stale on window expose. Please file a
    42965 QTBUG which explains how to reproduce. 
    42966 
    42967 Segmenting Rev-CJFlgYPlfAB-2.1A_imasked, density threshold 0.007113 
    42968 Showing 307 region surfaces 
    42969 20735 watershed regions, grouped to 307 regions 
    42970 Showing Rev-CJFlgYPlfAB-2.seg - 307 regions, 307 surfaces 
    42971 
    42972 > select #2.35
    42973 
    42974 1 model selected 
    42975 
    42976 > select add #2.120
    42977 
    42978 2 models selected 
    42979 
    42980 > select add #2.97
    42981 
    42982 3 models selected 
    42983 
    42984 > select add #2.72
    42985 
    42986 4 models selected 
    42987 
    42988 > select add #2.226
    42989 
    42990 5 models selected 
    42991 
    42992 > select add #2.92
    42993 
    42994 6 models selected 
    42995 
    42996 > hide #!3 models
    42997 
    42998 > select add #2.290
    42999 
    43000 7 models selected 
    43001 
    43002 > select add #2.280
    43003 
    43004 8 models selected 
    43005 
    43006 > select add #2.107
    43007 
    43008 9 models selected 
    43009 
    43010 > select add #2.10
    43011 
    43012 10 models selected 
    43013 
    43014 > select add #2.8
    43015 
    43016 11 models selected 
    43017 
    43018 > select add #2.20
    43019 
    43020 12 models selected 
    43021 
    43022 > select add #2.187
    43023 
    43024 13 models selected 
    43025 
    43026 > select add #2.210
    43027 
    43028 14 models selected 
    43029 
    43030 > select add #2.254
    43031 
    43032 15 models selected 
    43033 
    43034 > select add #2.270
    43035 
    43036 16 models selected 
    43037 
    43038 > select add #2.19
    43039 
    43040 17 models selected 
    43041 
    43042 > select add #2.99
    43043 
    43044 18 models selected 
    43045 
    43046 > select add #2.152
    43047 
    43048 19 models selected 
    43049 
    43050 > select add #2.103
    43051 
    43052 20 models selected 
    43053 
    43054 > select add #2.206
    43055 
    43056 21 models selected 
    43057 
    43058 > select add #2.170
    43059 
    43060 22 models selected 
    43061 
    43062 > select add #2.55
    43063 
    43064 23 models selected 
    43065 
    43066 > select add #2.205
    43067 
    43068 24 models selected 
    43069 
    43070 > select add #2.118
    43071 
    43072 25 models selected 
    43073 
    43074 > select add #2.128
    43075 
    43076 26 models selected 
    43077 
    43078 > select add #2.166
    43079 
    43080 27 models selected 
    43081 
    43082 > select add #2.57
    43083 
    43084 28 models selected 
    43085 
    43086 > select add #2.168
    43087 
    43088 29 models selected 
    43089 
    43090 > select add #2.209
    43091 
    43092 30 models selected 
    43093 
    43094 > select add #2.178
    43095 
    43096 31 models selected 
    43097 
    43098 > select add #2.125
    43099 
    43100 32 models selected 
    43101 
    43102 > select add #2.230
    43103 
    43104 33 models selected 
    43105 
    43106 > select add #2.173
    43107 
    43108 34 models selected 
    43109 
    43110 > select add #2.101
    43111 
    43112 35 models selected 
    43113 
    43114 > select add #2.242
    43115 
    43116 36 models selected 
    43117 
    43118 > select add #2.227
    43119 
    43120 37 models selected 
    43121 
    43122 > select add #2.145
    43123 
    43124 38 models selected 
    43125 
    43126 > select add #2.180
    43127 
    43128 39 models selected 
    43129 
    43130 > select add #2.184
    43131 
    43132 40 models selected 
    43133 
    43134 > select add #2.204
    43135 
    43136 41 models selected 
    43137 
    43138 > select add #2.172
    43139 
    43140 42 models selected 
    43141 
    43142 > select add #2.236
    43143 
    43144 43 models selected 
    43145 
    43146 > select add #2.221
    43147 
    43148 44 models selected 
    43149 
    43150 > select add #2.185
    43151 
    43152 45 models selected 
    43153 
    43154 > select add #2.259
    43155 
    43156 46 models selected 
    43157 
    43158 > select add #2.143
    43159 
    43160 47 models selected 
    43161 
    43162 > select add #2.190
    43163 
    43164 48 models selected 
    43165 
    43166 > select add #2.154
    43167 
    43168 49 models selected 
    43169 Grouped 49 regions 
    43170 
    43171 > select add #2.15
    43172 
    43173 2 models selected 
    43174 
    43175 > select add #2.80
    43176 
    43177 3 models selected 
    43178 
    43179 > select add #2.146
    43180 
    43181 4 models selected 
    43182 
    43183 > select add #2.163
    43184 
    43185 5 models selected 
    43186 
    43187 > select add #2.83
    43188 
    43189 6 models selected 
    43190 
    43191 > select add #2.115
    43192 
    43193 7 models selected 
    43194 
    43195 > select add #2.114
    43196 
    43197 8 models selected 
    43198 
    43199 > select add #2.79
    43200 
    43201 9 models selected 
    43202 
    43203 > select add #2.108
    43204 
    43205 10 models selected 
    43206 
    43207 > select add #2.147
    43208 
    43209 11 models selected 
    43210 
    43211 > select add #2.88
    43212 
    43213 12 models selected 
    43214 
    43215 > select add #2.44
    43216 
    43217 13 models selected 
    43218 
    43219 > select subtract #2.44
    43220 
    43221 12 models selected 
    43222 
    43223 > select add #2.44
    43224 
    43225 13 models selected 
    43226 
    43227 > select add #2.271
    43228 
    43229 14 models selected 
    43230 
    43231 > select add #2.249
    43232 
    43233 15 models selected 
    43234 
    43235 > select add #2.279
    43236 
    43237 16 models selected 
    43238 
    43239 > select add #2.281
    43240 
    43241 17 models selected 
    43242 
    43243 > select add #2.294
    43244 
    43245 18 models selected 
    43246 
    43247 > select add #2.16
    43248 
    43249 19 models selected 
    43250 
    43251 > select add #2.222
    43252 
    43253 20 models selected 
    43254 
    43255 > select add #2.1
    43256 
    43257 21 models selected 
    43258 
    43259 > select add #2.176
    43260 
    43261 22 models selected 
    43262 
    43263 > select add #2.138
    43264 
    43265 23 models selected 
    43266 Grouped 23 regions 
    43267 
    43268 > select add #2.110
    43269 
    43270 2 models selected 
    43271 
    43272 > select add #2.52
    43273 
    43274 3 models selected 
    43275 Grouped 3 regions 
    43276 
    43277 > select add #2.109
    43278 
    43279 2 models selected 
    43280 
    43281 > select add #2.67
    43282 
    43283 3 models selected 
    43284 
    43285 > select add #2.66
    43286 
    43287 4 models selected 
    43288 
    43289 > select add #2.87
    43290 
    43291 5 models selected 
    43292 
    43293 > select add #2.95
    43294 
    43295 6 models selected 
    43296 
    43297 > select add #2.91
    43298 
    43299 7 models selected 
    43300 
    43301 > select add #2.192
    43302 
    43303 8 models selected 
    43304 
    43305 > select add #2.40
    43306 
    43307 9 models selected 
    43308 
    43309 > select add #2.153
    43310 
    43311 10 models selected 
    43312 
    43313 > select add #2.54
    43314 
    43315 11 models selected 
    43316 
    43317 > select add #2.46
    43318 
    43319 12 models selected 
    43320 
    43321 > select add #2.45
    43322 
    43323 13 models selected 
    43324 
    43325 > select add #2.9
    43326 
    43327 14 models selected 
    43328 
    43329 > select add #2.111
    43330 
    43331 15 models selected 
    43332 
    43333 > select subtract #2.111
    43334 
    43335 14 models selected 
    43336 
    43337 > select add #2.81
    43338 
    43339 15 models selected 
    43340 
    43341 > select add #2.111
    43342 
    43343 16 models selected 
    43344 
    43345 > select add #2.161
    43346 
    43347 17 models selected 
    43348 
    43349 > select add #2.157
    43350 
    43351 18 models selected 
    43352 
    43353 > select add #2.94
    43354 
    43355 19 models selected 
    43356 
    43357 > select add #2.78
    43358 
    43359 20 models selected 
    43360 
    43361 > select subtract #2.78
    43362 
    43363 19 models selected 
    43364 
    43365 > select subtract #2.94
    43366 
    43367 18 models selected 
    43368 Grouped 18 regions 
    43369 
    43370 > select clear
    43371 
    43372 > select #2.1
    43373 
    43374 1 model selected 
    43375 
    43376 > select add #2.29
    43377 
    43378 2 models selected 
    43379 
    43380 > select add #2.241
    43381 
    43382 3 models selected 
    43383 
    43384 > select add #2.18
    43385 
    43386 4 models selected 
    43387 
    43388 > select add #2.202
    43389 
    43390 5 models selected 
    43391 
    43392 > select add #2.4
    43393 
    43394 6 models selected 
    43395 Grouped 6 regions 
    43396 
    43397 > select clear
    43398 
    43399 > select #2.1
    43400 
    43401 1 model selected 
    43402 Opened Rev-CJFlgYPlfAB-2_imasked as #4, grid size 200,200,200, pixel 2.14,
    43403 shown at step 1, values float32 
    43404 Segmenting Rev-CJFlgYPlfAB-2_imasked, density threshold 0.007113 
    43405 Showing 215 region surfaces 
    43406 14302 watershed regions, grouped to 215 regions 
    43407 Showing Rev-CJFlgYPlfAB-2_imasked.seg - 215 regions, 215 surfaces 
    43408 
    43409 > select #2.1
    43410 
    43411 1 model selected 
    43412 
    43413 > select add #2.63
    43414 
    43415 2 models selected 
    43416 
    43417 > select #2.1
    43418 
    43419 1 model selected 
    43420 
    43421 > select #2.111
    43422 
    43423 1 model selected 
    43424 
    43425 > select #2.25
    43426 
    43427 1 model selected 
    43428 
    43429 > select add #2.60
    43430 
    43431 2 models selected 
    43432 
    43433 > select add #2.19
    43434 
    43435 3 models selected 
    43436 
    43437 > select add #2.53
    43438 
    43439 4 models selected 
    43440 
    43441 > select add #2.17
    43442 
    43443 5 models selected 
    43444 
    43445 > select add #2.63
    43446 
    43447 6 models selected 
    43448 Grouped 6 regions 
    43449 
    43450 > select clear
    43451 
    43452 > select #2.1
    43453 
    43454 1 model selected 
    43455 Ungrouped to 4 regions 
    43456 
    43457 > select #2.25
    43458 
    43459 1 model selected 
    43460 Ungrouped to 5 regions 
    43461 
    43462 > select #2.217
    43463 
    43464 1 model selected 
    43465 
    43466 > select add #2.53
    43467 
    43468 2 models selected 
    43469 
    43470 > select add #2.17
    43471 
    43472 3 models selected 
    43473 
    43474 > select add #2.218
    43475 
    43476 4 models selected 
    43477 Grouped 4 regions 
    43478 
    43479 > select #2.54
    43480 
    43481 1 model selected 
    43482 
    43483 > select add #2.17
    43484 
    43485 2 models selected 
    43486 
    43487 > select clear
    43488 
    43489 > select #2.111
    43490 
    43491 1 model selected 
    43492 
    43493 > select add #2.17
    43494 
    43495 2 models selected 
    43496 Grouped 2 regions 
    43497 
    43498 > select clear
    43499 
    43500 > select #2.17
    43501 
    43502 1 model selected 
    43503 
    43504 > select clear
    43505 
    43506 > select #2.17
    43507 
    43508 1 model selected 
    43509 
    43510 > hide #!4 models
    43511 
    43512 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #5, grid size 200,200,200, pixel
    43513 2.14, shown at step 1, values float32 
    43514 
    43515 The cached device pixel ratio value was stale on window expose. Please file a
    43516 QTBUG which explains how to reproduce. 
    43517 
    43518 > save /Users/shoichi/Desktop/CJSef_no-mask/PflC2.mrc models #5
    43519 
    43520 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #6, grid size 200,200,200, pixel
    43521 2.14, shown at step 1, values float32 
    43522 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked, density threshold 0.007113 
    43523 Showing 210 region surfaces 
    43524 13006 watershed regions, grouped to 210 regions 
    43525 Showing Rev-CJFlgYPlfAB-2_imasked_imasked.seg - 210 regions, 210 surfaces 
    43526 
    43527 > hide #!5 models
    43528 
    43529 > hide #!6 models
    43530 
    43531 > show #!5 models
    43532 
    43533 > select #2.38
    43534 
    43535 1 model selected 
    43536 
    43537 > select add #2.98
    43538 
    43539 2 models selected 
    43540 
    43541 > select add #2.63
    43542 
    43543 3 models selected 
    43544 
    43545 > select add #2.96
    43546 
    43547 4 models selected 
    43548 
    43549 > select add #2.90
    43550 
    43551 5 models selected 
    43552 
    43553 > select add #2.54
    43554 
    43555 6 models selected 
    43556 
    43557 > select add #2.27
    43558 
    43559 7 models selected 
    43560 
    43561 > hide #!5 models
    43562 
    43563 Grouped 7 regions 
    43564 
    43565 > select add #2.89
    43566 
    43567 2 models selected 
    43568 Grouped 2 regions 
    43569 
    43570 > select clear
    43571 
    43572 > select #2.27
    43573 
    43574 1 model selected 
    43575 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked as #7, grid size 200,200,200,
    43576 pixel 2.14, shown at step 1, values float32 
    43577 
    43578 The cached device pixel ratio value was stale on window expose. Please file a
    43579 QTBUG which explains how to reproduce. 
    43580 
    43581 > save /Users/shoichi/Desktop/CJSef_no-mask/PflC1.mrc models #7
    43582 
    43583 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked as #8, grid size 200,200,200,
    43584 pixel 2.14, shown at step 1, values float32 
    43585 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked, density threshold
    43586 0.007113 
    43587 Showing 202 region surfaces 
    43588 12777 watershed regions, grouped to 202 regions 
    43589 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked.seg - 202 regions, 202
    43590 surfaces 
    43591 
    43592 > hide #!7 models
    43593 
    43594 > hide #!8 models
    43595 
    43596 > select #2.74
    43597 
    43598 1 model selected 
    43599 
    43600 > select add #2.65
    43601 
    43602 2 models selected 
    43603 
    43604 > select add #2.61
    43605 
    43606 3 models selected 
    43607 
    43608 > select clear
    43609 
    43610 > select #2.61
    43611 
    43612 1 model selected 
    43613 
    43614 > select add #2.65
    43615 
    43616 2 models selected 
    43617 
    43618 > select add #2.74
    43619 
    43620 3 models selected 
    43621 Grouped 3 regions 
    43622 
    43623 > select clear
    43624 
    43625 > select #2.61
    43626 
    43627 1 model selected 
    43628 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked as #9, grid size
    43629 200,200,200, pixel 2.14, shown at step 1, values float32 
    43630 
    43631 The cached device pixel ratio value was stale on window expose. Please file a
    43632 QTBUG which explains how to reproduce. 
    43633 
    43634 > save /Users/shoichi/Desktop/CJSef_no-mask/PflD.mrc models #9
    43635 
    43636 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked as #10, grid size
    43637 200,200,200, pixel 2.14, shown at step 1, values float32 
    43638 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked, density
    43639 threshold 0.007113 
    43640 Showing 199 region surfaces 
    43641 12705 watershed regions, grouped to 199 regions 
    43642 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked.seg - 199 regions,
    43643 199 surfaces 
    43644 
    43645 > hide #!9 models
    43646 
    43647 > select #2.32
    43648 
    43649 1 model selected 
    43650 
    43651 > select add #2.37
    43652 
    43653 2 models selected 
    43654 
    43655 > select add #2.31
    43656 
    43657 3 models selected 
    43658 
    43659 > select add #2.28
    43660 
    43661 4 models selected 
    43662 
    43663 > hide #!10 models
    43664 
    43665 > select clear
    43666 
    43667 > select #2.28
    43668 
    43669 1 model selected 
    43670 
    43671 > select add #2.31
    43672 
    43673 2 models selected 
    43674 
    43675 > select add #2.37
    43676 
    43677 3 models selected 
    43678 
    43679 > select add #2.32
    43680 
    43681 4 models selected 
    43682 Ungrouped to 16 regions 
    43683 
    43684 > select #2.203
    43685 
    43686 1 model selected 
    43687 Ungrouped to 6 regions 
    43688 
    43689 > select #2.217
    43690 
    43691 1 model selected 
    43692 
    43693 > select add #2.32
    43694 
    43695 2 models selected 
    43696 
    43697 > select add #2.28
    43698 
    43699 3 models selected 
    43700 Grouped 3 regions 
    43701 
    43702 > select add #2.216
    43703 
    43704 2 models selected 
    43705 
    43706 > select add #2.37
    43707 
    43708 3 models selected 
    43709 Grouped 3 regions 
    43710 
    43711 > select #2.213
    43712 
    43713 1 model selected 
    43714 
    43715 > select add #2.212
    43716 
    43717 2 models selected 
    43718 
    43719 > select add #2.215
    43720 
    43721 3 models selected 
    43722 Grouped 3 regions 
    43723 
    43724 > select add #2.205
    43725 
    43726 2 models selected 
    43727 Grouped 2 regions 
    43728 
    43729 > select add #2.28
    43730 
    43731 2 models selected 
    43732 Grouped 2 regions 
    43733 
    43734 > select #2.201
    43735 
    43736 1 model selected 
    43737 
    43738 > select clear
    43739 
    43740 > select #2.201
    43741 
    43742 1 model selected 
    43743 Ungrouped to 7 regions 
    43744 Ungrouped to 20 regions 
    43745 
    43746 > select #2.226
    43747 
    43748 1 model selected 
    43749 
    43750 > select add #2.224
    43751 
    43752 2 models selected 
    43753 
    43754 > select add #2.221
    43755 
    43756 3 models selected 
    43757 
    43758 > select add #2.37
    43759 
    43760 4 models selected 
    43761 Grouped 4 regions 
    43762 
    43763 > select add #2.218
    43764 
    43765 2 models selected 
    43766 
    43767 > select add #2.231
    43768 
    43769 3 models selected 
    43770 
    43771 > select add #2.230
    43772 
    43773 4 models selected 
    43774 
    43775 > select add #2.228
    43776 
    43777 5 models selected 
    43778 
    43779 > select add #2.225
    43780 
    43781 6 models selected 
    43782 
    43783 > select add #2.223
    43784 
    43785 7 models selected 
    43786 
    43787 > select add #2.220
    43788 
    43789 8 models selected 
    43790 Grouped 8 regions 
    43791 
    43792 > select add #2.219
    43793 
    43794 2 models selected 
    43795 
    43796 > select add #2.232
    43797 
    43798 3 models selected 
    43799 
    43800 > select add #2.229
    43801 
    43802 4 models selected 
    43803 
    43804 > select add #2.222
    43805 
    43806 5 models selected 
    43807 
    43808 > select add #2.233
    43809 
    43810 6 models selected 
    43811 Grouped 6 regions 
    43812 
    43813 > select clear
    43814 
    43815 > select #2.28
    43816 
    43817 1 model selected 
    43818 
    43819 > select add #2.37
    43820 
    43821 2 models selected 
    43822 Grouped 2 regions 
    43823 Showing 216 region surfaces 
    43824 
    43825 > select clear
    43826 
    43827 > select #2.28
    43828 
    43829 1 model selected 
    43830 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked as #11, grid
    43831 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    43832 
    43833 The cached device pixel ratio value was stale on window expose. Please file a
    43834 QTBUG which explains how to reproduce. 
    43835 
    43836 > save /Users/shoichi/Desktop/CJSef_no-mask/MotBpg.mrc models #11
    43837 
    43838 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked as #12, grid
    43839 size 200,200,200, pixel 2.14, shown at step 1, values float32 
    43840 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked, density
    43841 threshold 0.007113 
    43842 Showing 200 region surfaces 
    43843 12639 watershed regions, grouped to 200 regions 
    43844 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked.seg - 200
    43845 regions, 200 surfaces 
    43846 
    43847 > hide #!11 models
    43848 
    43849 > select #2.39
    43850 
    43851 1 model selected 
    43852 
    43853 > select add #2.53
    43854 
    43855 2 models selected 
    43856 
    43857 > select add #2.57
    43858 
    43859 3 models selected 
    43860 Drag select of 16691, 40 of 44176 triangles, 16475, 11 of 17632 triangles,
    43861 16441, 10 of 16132 triangles, 12 Rev-
    43862 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked 
    43863 
    43864 > select add #2.66
    43865 
    43866 9 models selected 
    43867 
    43868 > select #2.48
    43869 
    43870 1 model selected 
    43871 
    43872 > select add #2.66
    43873 
    43874 2 models selected 
    43875 
    43876 > select add #2.105
    43877 
    43878 3 models selected 
    43879 
    43880 > select add #2.89
    43881 
    43882 4 models selected 
    43883 
    43884 > select add #2.39
    43885 
    43886 5 models selected 
    43887 
    43888 > select add #2.53
    43889 
    43890 6 models selected 
    43891 
    43892 > select add #2.57
    43893 
    43894 7 models selected 
    43895 
    43896 > select add #2.51
    43897 
    43898 8 models selected 
    43899 
    43900 > select add #2.69
    43901 
    43902 9 models selected 
    43903 
    43904 > select add #2.29
    43905 
    43906 10 models selected 
    43907 
    43908 > select add #2.32
    43909 
    43910 11 models selected 
    43911 
    43912 > select add #2.156
    43913 
    43914 12 models selected 
    43915 
    43916 > select subtract #2.156
    43917 
    43918 11 models selected 
    43919 
    43920 > select add #2.56
    43921 
    43922 12 models selected 
    43923 
    43924 > select add #2.80
    43925 
    43926 13 models selected 
    43927 
    43928 > select add #2.156
    43929 
    43930 14 models selected 
    43931 
    43932 > select add #2.45
    43933 
    43934 15 models selected 
    43935 
    43936 > select add #2.52
    43937 
    43938 16 models selected 
    43939 
    43940 > select add #2.41
    43941 
    43942 17 models selected 
    43943 
    43944 > hide #!12 models
    43945 
    43946 Grouped 17 regions 
    43947 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked as
    43948 #13, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    43949 
    43950 The cached device pixel ratio value was stale on window expose. Please file a
    43951 QTBUG which explains how to reproduce. 
    43952 
    43953 > save /Users/shoichi/Desktop/CJSef_no-mask/PflA-FlgY.mrc models #13
    43954 
    43955 Opened Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked as
    43956 #14, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    43957 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked,
    43958 density threshold 0.007113 
    43959 Showing 182 region surfaces 
    43960 11992 watershed regions, grouped to 182 regions 
    43961 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked.seg
    43962 - 182 regions, 182 surfaces 
    43963 
    43964 > hide #!14 models
    43965 
    43966 > hide #!13 models
    43967 
    43968 > select #2.142
    43969 
    43970 1 model selected 
    43971 
    43972 > select add #2.73
    43973 
    43974 2 models selected 
    43975 
    43976 > select add #2.113
    43977 
    43978 3 models selected 
    43979 
    43980 > select add #2.79
    43981 
    43982 4 models selected 
    43983 
    43984 > select add #2.22
    43985 
    43986 5 models selected 
    43987 
    43988 > select add #2.13
    43989 
    43990 6 models selected 
    43991 
    43992 > select clear
    43993 
    43994 > select #2.14
    43995 
    43996 1 model selected 
    43997 
    43998 > select add #2.65
    43999 
    44000 2 models selected 
    44001 Grouped 2 regions 
    44002 
    44003 > select clear
    44004 
    44005 > select #2.10
    44006 
    44007 1 model selected 
    44008 
    44009 > select add #2.37
    44010 
    44011 2 models selected 
    44012 
    44013 > select #2.10
    44014 
    44015 1 model selected 
    44016 Ungrouped to 2 regions 
    44017 
    44018 > select #2.65
    44019 
    44020 1 model selected 
    44021 Ungrouped to 18 regions 
    44022 
    44023 > select #2.37
    44024 
    44025 1 model selected 
    44026 
    44027 > select add #2.183
    44028 
    44029 2 models selected 
    44030 
    44031 > select add #2.191
    44032 
    44033 3 models selected 
    44034 
    44035 > select add #2.193
    44036 
    44037 4 models selected 
    44038 
    44039 > select add #2.184
    44040 
    44041 5 models selected 
    44042 
    44043 > select subtract #2.184
    44044 
    44045 4 models selected 
    44046 Grouped 4 regions 
    44047 
    44048 > select #2.184
    44049 
    44050 1 model selected 
    44051 Ungrouped to 10 regions 
    44052 
    44053 > select #2.14
    44054 
    44055 1 model selected 
    44056 
    44057 > select add #2.199
    44058 
    44059 2 models selected 
    44060 
    44061 > select add #2.201
    44062 
    44063 3 models selected 
    44064 
    44065 > select add #2.188
    44066 
    44067 4 models selected 
    44068 
    44069 > select add #2.186
    44070 
    44071 5 models selected 
    44072 
    44073 > select add #2.185
    44074 
    44075 6 models selected 
    44076 
    44077 > select add #2.200
    44078 
    44079 7 models selected 
    44080 
    44081 > select add #2.195
    44082 
    44083 8 models selected 
    44084 
    44085 > select add #2.194
    44086 
    44087 9 models selected 
    44088 Grouped 9 regions 
    44089 
    44090 > select add #2.197
    44091 
    44092 2 models selected 
    44093 Grouped 2 regions 
    44094 
    44095 > select clear
    44096 
    44097 > select #2.166
    44098 
    44099 1 model selected 
    44100 
    44101 > select add #2.189
    44102 
    44103 2 models selected 
    44104 
    44105 > select add #2.187
    44106 
    44107 3 models selected 
    44108 
    44109 > select add #2.205
    44110 
    44111 4 models selected 
    44112 
    44113 > select add #2.202
    44114 
    44115 5 models selected 
    44116 
    44117 > select add #2.206
    44118 
    44119 6 models selected 
    44120 
    44121 > select add #2.183
    44122 
    44123 7 models selected 
    44124 
    44125 > select add #2.203
    44126 
    44127 8 models selected 
    44128 
    44129 > select add #2.196
    44130 
    44131 9 models selected 
    44132 
    44133 > select #2.14
    44134 
    44135 1 model selected 
    44136 Ungrouped to 2 regions 
    44137 Ungrouped to 11 regions 
    44138 
    44139 > select subtract #2.200
    44140 
    44141 10 models selected 
    44142 
    44143 > select clear
    44144 
    44145 > select #2.200
    44146 
    44147 1 model selected 
    44148 
    44149 > select #2.197
    44150 
    44151 1 model selected 
    44152 
    44153 > select #2.197
    44154 
    44155 1 model selected 
    44156 Ungrouped to 6 regions 
    44157 Ungrouped to 0 regions 
    44158 
    44159 > select #2.14
    44160 
    44161 1 model selected 
    44162 
    44163 > select add #2.186
    44164 
    44165 2 models selected 
    44166 
    44167 > select add #2.191
    44168 
    44169 3 models selected 
    44170 
    44171 > select subtract #2.191
    44172 
    44173 2 models selected 
    44174 
    44175 > select add #2.193
    44176 
    44177 3 models selected 
    44178 
    44179 > select add #2.191
    44180 
    44181 4 models selected 
    44182 
    44183 > select add #2.65
    44184 
    44185 5 models selected 
    44186 
    44187 > select add #2.185
    44188 
    44189 6 models selected 
    44190 
    44191 > select add #2.198
    44192 
    44193 7 models selected 
    44194 
    44195 > select add #2.212
    44196 
    44197 8 models selected 
    44198 
    44199 > select add #2.184
    44200 
    44201 9 models selected 
    44202 
    44203 > select add #2.201
    44204 
    44205 10 models selected 
    44206 
    44207 > select add #2.211
    44208 
    44209 11 models selected 
    44210 
    44211 > select add #2.194
    44212 
    44213 12 models selected 
    44214 
    44215 > select add #2.195
    44216 
    44217 13 models selected 
    44218 
    44219 > select add #2.209
    44220 
    44221 14 models selected 
    44222 
    44223 > select add #2.15
    44224 
    44225 15 models selected 
    44226 Showing 211 region surfaces 
    44227 
    44228 > select clear
    44229 
    44230 > save /Users/shoichi/Desktop/CJSef_no-mask/Segment-nomask.cxs
    44231 
    44232 > save /Users/shoichi/Desktop/CJSef_no-mask/Segment-nomask.cxs includeMaps
    44233 > true
    44234 
    44235 ——— End of log from Tue Jul 22 14:40:48 2025 ———
    44236 
    44237 opened ChimeraX session 
    44238 Showing Rev-CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked.seg
    44239 - 211 regions, 211 surfaces 
    44240 
    44241 > select #2.142
    44242 
    44243 1 model selected 
    44244 
    44245 > select add #2.127
    44246 
    44247 2 models selected 
    44248 
    44249 > select add #2.44
    44250 
    44251 3 models selected 
    44252 
    44253 > select add #2.113
    44254 
    44255 4 models selected 
    44256 
    44257 > select add #2.52
    44258 
    44259 5 models selected 
    44260 
    44261 > select add #2.148
    44262 
    44263 6 models selected 
    44264 
    44265 > select add #2.37
    44266 
    44267 7 models selected 
    44268 
    44269 > select add #2.137
    44270 
    44271 8 models selected 
    44272 
    44273 > select add #2.70
    44274 
    44275 9 models selected 
    44276 
    44277 > select add #2.60
    44278 
    44279 10 models selected 
    44280 
    44281 > select add #2.188
    44282 
    44283 11 models selected 
    44284 
    44285 > select add #2.63
    44286 
    44287 12 models selected 
    44288 
    44289 > select add #2.66
    44290 
    44291 13 models selected 
    44292 
    44293 > select add #2.115
    44294 
    44295 14 models selected 
    44296 
    44297 > select add #2.39
    44298 
    44299 15 models selected 
    44300 
    44301 > select add #2.125
    44302 
    44303 16 models selected 
    44304 
    44305 > select add #2.105
    44306 
    44307 17 models selected 
    44308 
    44309 > select subtract #2.105
    44310 
    44311 16 models selected 
    44312 
    44313 > select add #2.105
    44314 
    44315 17 models selected 
    44316 
    44317 > select add #2.92
    44318 
    44319 18 models selected 
    44320 Grouped 18 regions 
    44321 
    44322 > select add #2.149
    44323 
    44324 2 models selected 
    44325 
    44326 > select add #2.46
    44327 
    44328 3 models selected 
    44329 
    44330 > select add #2.76
    44331 
    44332 4 models selected 
    44333 
    44334 > select add #2.123
    44335 
    44336 5 models selected 
    44337 
    44338 > select add #2.167
    44339 
    44340 6 models selected 
    44341 
    44342 > select add #2.210
    44343 
    44344 7 models selected 
    44345 
    44346 > select add #2.126
    44347 
    44348 8 models selected 
    44349 Grouped 8 regions 
    44350 
    44351 > select add #2.42
    44352 
    44353 2 models selected 
    44354 
    44355 > select add #2.120
    44356 
    44357 3 models selected 
    44358 
    44359 > select add #2.83
    44360 
    44361 4 models selected 
    44362 
    44363 > select add #2.80
    44364 
    44365 5 models selected 
    44366 Grouped 5 regions 
    44367 
    44368 > select add #2.51
    44369 
    44370 2 models selected 
    44371 
    44372 > select add #2.211
    44373 
    44374 3 models selected 
    44375 Grouped 3 regions 
    44376 
    44377 > select add #2.151
    44378 
    44379 2 models selected 
    44380 
    44381 > select add #2.33
    44382 
    44383 3 models selected 
    44384 
    44385 > select add #2.31
    44386 
    44387 4 models selected 
    44388 
    44389 > select subtract #2.31
    44390 
    44391 3 models selected 
    44392 
    44393 > select add #2.31
    44394 
    44395 4 models selected 
    44396 
    44397 > select add #2.25
    44398 
    44399 5 models selected 
    44400 
    44401 > select add #2.23
    44402 
    44403 6 models selected 
    44404 
    44405 > select add #2.27
    44406 
    44407 7 models selected 
    44408 
    44409 > select add #2.26
    44410 
    44411 8 models selected 
    44412 
    44413 > select subtract #2.23
    44414 
    44415 7 models selected 
    44416 
    44417 > select add #2.23
    44418 
    44419 8 models selected 
    44420 
    44421 > select add #2.21
    44422 
    44423 9 models selected 
    44424 
    44425 > select add #2.17
    44426 
    44427 10 models selected 
    44428 
    44429 > select add #2.19
    44430 
    44431 11 models selected 
    44432 
    44433 > select add #2.13
    44434 
    44435 12 models selected 
    44436 
    44437 > select add #2.8
    44438 
    44439 13 models selected 
    44440 
    44441 > select add #2.12
    44442 
    44443 14 models selected 
    44444 
    44445 > select add #2.6
    44446 
    44447 15 models selected 
    44448 
    44449 > select add #2.11
    44450 
    44451 16 models selected 
    44452 
    44453 > select add #2.124
    44454 
    44455 17 models selected 
    44456 
    44457 > select subtract #2.124
    44458 
    44459 16 models selected 
    44460 
    44461 > select subtract #2.11
    44462 
    44463 15 models selected 
    44464 
    44465 > select add #2.11
    44466 
    44467 16 models selected 
    44468 
    44469 > select add #2.7
    44470 
    44471 17 models selected 
    44472 
    44473 > select add #2.5
    44474 
    44475 18 models selected 
    44476 
    44477 > select add #2.32
    44478 
    44479 19 models selected 
    44480 Grouped 19 regions 
    44481 
    44482 > select add #2.22
    44483 
    44484 2 models selected 
    44485 
    44486 > select add #2.20
    44487 
    44488 3 models selected 
    44489 
    44490 > select add #2.15
    44491 
    44492 4 models selected 
    44493 
    44494 > select add #2.9
    44495 
    44496 5 models selected 
    44497 
    44498 > select add #2.14
    44499 
    44500 6 models selected 
    44501 
    44502 > select add #2.34
    44503 
    44504 7 models selected 
    44505 
    44506 > select add #2.4
    44507 
    44508 8 models selected 
    44509 
    44510 > select add #2.1
    44511 
    44512 9 models selected 
    44513 
    44514 > select add #2.2
    44515 
    44516 10 models selected 
    44517 
    44518 > select add #2.165
    44519 
    44520 11 models selected 
    44521 Grouped 11 regions 
    44522 
    44523 > select add #2.10
    44524 
    44525 2 models selected 
    44526 
    44527 > select add #2.35
    44528 
    44529 3 models selected 
    44530 
    44531 > select add #2.100
    44532 
    44533 4 models selected 
    44534 Grouped 4 regions 
    44535 
    44536 > select add #2.134
    44537 
    44538 2 models selected 
    44539 
    44540 > select add #2.53
    44541 
    44542 3 models selected 
    44543 
    44544 > select add #2.40
    44545 
    44546 4 models selected 
    44547 
    44548 > select add #2.119
    44549 
    44550 5 models selected 
    44551 Grouped 5 regions 
    44552 
    44553 > select add #2.195
    44554 
    44555 2 models selected 
    44556 
    44557 > select add #2.175
    44558 
    44559 3 models selected 
    44560 
    44561 > select add #2.85
    44562 
    44563 4 models selected 
    44564 
    44565 > select add #2.192
    44566 
    44567 5 models selected 
    44568 
    44569 > select add #2.170
    44570 
    44571 6 models selected 
    44572 Grouped 6 regions 
    44573 
    44574 > select clear
    44575 
    44576 > select #2.97
    44577 
    44578 1 model selected 
    44579 
    44580 > select clear
    44581 
    44582 > select #2.1
    44583 
    44584 1 model selected 
    44585 
    44586 > select add #2.204
    44587 
    44588 2 models selected 
    44589 Grouped 2 regions 
    44590 
    44591 > select add #2.196
    44592 
    44593 2 models selected 
    44594 
    44595 > select add #2.58
    44596 
    44597 3 models selected 
    44598 
    44599 > select add #2.75
    44600 
    44601 4 models selected 
    44602 
    44603 > select add #2.96
    44604 
    44605 5 models selected 
    44606 
    44607 > select add #2.103
    44608 
    44609 6 models selected 
    44610 
    44611 > select add #2.172
    44612 
    44613 7 models selected 
    44614 Grouped 7 regions 
    44615 
    44616 > select add #2.128
    44617 
    44618 2 models selected 
    44619 Grouped 2 regions 
    44620 
    44621 > select add #2.205
    44622 
    44623 2 models selected 
    44624 
    44625 > select add #2.150
    44626 
    44627 3 models selected 
    44628 Grouped 3 regions 
    44629 
    44630 > select clear
    44631 
    44632 > select #2.1
    44633 
    44634 1 model selected 
    44635 
    44636 The cached device pixel ratio value was stale on window expose. Please file a
    44637 QTBUG which explains how to reproduce. 
    44638 
    44639 Showing 131 region surfaces 
    44640 Opened Rev-
    44641 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #15,
    44642 grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    44643 
    44644 The cached device pixel ratio value was stale on window expose. Please file a
    44645 QTBUG which explains how to reproduce. 
    44646 
    44647 Segmenting Rev-
    44648 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    44649 threshold 0.007113 
    44650 Showing 55 region surfaces 
    44651 2769 watershed regions, grouped to 55 regions 
    44652 Showing Rev-
    44653 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 55
    44654 regions, 55 surfaces 
    44655 
    44656 > select #2.15
    44657 
    44658 1 model selected 
    44659 Ungrouped to 3 regions 
    44660 
    44661 > select #2.56
    44662 
    44663 1 model selected 
    44664 
    44665 > select #2.1
    44666 
    44667 1 model selected 
    44668 Ungrouped to 5 regions 
    44669 
    44670 > select #2.56
    44671 
    44672 1 model selected 
    44673 
    44674 > select add #2.59
    44675 
    44676 2 models selected 
    44677 
    44678 > select add #2.60
    44679 
    44680 3 models selected 
    44681 
    44682 > select add #2.61
    44683 
    44684 4 models selected 
    44685 
    44686 > select add #2.62
    44687 
    44688 5 models selected 
    44689 Grouped 5 regions 
    44690 
    44691 > select clear
    44692 
    44693 > select #2.15
    44694 
    44695 1 model selected 
    44696 Ungrouped to 5 regions 
    44697 
    44698 > select #2.62
    44699 
    44700 1 model selected 
    44701 
    44702 > select add #2.61
    44703 
    44704 2 models selected 
    44705 
    44706 > select add #2.60
    44707 
    44708 3 models selected 
    44709 
    44710 > select add #2.1
    44711 
    44712 4 models selected 
    44713 Grouped 4 regions 
    44714 
    44715 > select add #2.56
    44716 
    44717 2 models selected 
    44718 Grouped 2 regions 
    44719 
    44720 > select clear
    44721 
    44722 > select #2.1
    44723 
    44724 1 model selected 
    44725 
    44726 > hide #!15 models
    44727 
    44728 > select clear
    44729 
    44730 > select #2.59
    44731 
    44732 1 model selected 
    44733 Ungrouped to 15 regions 
    44734 
    44735 > select #2.5
    44736 
    44737 1 model selected 
    44738 
    44739 > select add #2.61
    44740 
    44741 2 models selected 
    44742 
    44743 > select add #2.71
    44744 
    44745 3 models selected 
    44746 
    44747 > select add #2.56
    44748 
    44749 4 models selected 
    44750 Grouped 4 regions 
    44751 
    44752 > select #2.70
    44753 
    44754 1 model selected 
    44755 
    44756 > select add #2.66
    44757 
    44758 2 models selected 
    44759 
    44760 > select add #2.65
    44761 
    44762 3 models selected 
    44763 
    44764 > select add #2.62
    44765 
    44766 4 models selected 
    44767 
    44768 > select add #2.64
    44769 
    44770 5 models selected 
    44771 
    44772 > select add #2.67
    44773 
    44774 6 models selected 
    44775 
    44776 > select add #2.69
    44777 
    44778 7 models selected 
    44779 
    44780 > select add #2.60
    44781 
    44782 8 models selected 
    44783 Grouped 8 regions 
    44784 Showing 61 region surfaces 
    44785 
    44786 > select add #2.1
    44787 
    44788 2 models selected 
    44789 Grouped 2 regions 
    44790 
    44791 > select #2.72
    44792 
    44793 1 model selected 
    44794 
    44795 > select add #2.63
    44796 
    44797 2 models selected 
    44798 
    44799 > select add #2.5
    44800 
    44801 3 models selected 
    44802 Grouped 3 regions 
    44803 
    44804 > select #2.28
    44805 
    44806 1 model selected 
    44807 Ungrouped to 3 regions 
    44808 
    44809 > select clear
    44810 
    44811 > select #2.60
    44812 
    44813 1 model selected 
    44814 Showing 60 region surfaces 
    44815 
    44816 > select add #2.1
    44817 
    44818 2 models selected 
    44819 Grouped 2 regions 
    44820 
    44821 > select clear
    44822 
    44823 > select #2.38
    44824 
    44825 1 model selected 
    44826 Ungrouped to 3 regions 
    44827 
    44828 > select #2.61
    44829 
    44830 1 model selected 
    44831 
    44832 > select add #2.1
    44833 
    44834 2 models selected 
    44835 Grouped 2 regions 
    44836 
    44837 > select clear
    44838 
    44839 > select #2.51
    44840 
    44841 1 model selected 
    44842 Ungrouped to 2 regions 
    44843 
    44844 > select #2.61
    44845 
    44846 1 model selected 
    44847 
    44848 > select add #2.1
    44849 
    44850 2 models selected 
    44851 
    44852 > select subtract #2.1
    44853 
    44854 1 model selected 
    44855 
    44856 The cached device pixel ratio value was stale on window expose. Please file a
    44857 QTBUG which explains how to reproduce. 
    44858 
    44859 > select add #2.1
    44860 
    44861 2 models selected 
    44862 Grouped 2 regions 
    44863 
    44864 > select #2.22
    44865 
    44866 1 model selected 
    44867 Ungrouped to 4 regions 
    44868 
    44869 > select #2.61
    44870 
    44871 1 model selected 
    44872 
    44873 > select add #2.1
    44874 
    44875 2 models selected 
    44876 Grouped 2 regions 
    44877 
    44878 > select clear
    44879 
    44880 > select #2.63
    44881 
    44882 1 model selected 
    44883 Ungrouped to 15 regions 
    44884 Ungrouped to 7 regions 
    44885 
    44886 > select #2.1
    44887 
    44888 1 model selected 
    44889 
    44890 > select add #2.64
    44891 
    44892 2 models selected 
    44893 
    44894 > select add #2.74
    44895 
    44896 3 models selected 
    44897 
    44898 > select add #2.24
    44899 
    44900 4 models selected 
    44901 Grouped 4 regions 
    44902 
    44903 > select clear
    44904 
    44905 > select #2.1
    44906 
    44907 1 model selected 
    44908 
    44909 > select clear
    44910 
    44911 > select #2.21
    44912 
    44913 1 model selected 
    44914 Ungrouped to 5 regions 
    44915 
    44916 > select #2.77
    44917 
    44918 1 model selected 
    44919 Showing 82 region surfaces 
    44920 
    44921 > select add #2.1
    44922 
    44923 2 models selected 
    44924 Grouped 2 regions 
    44925 
    44926 > select add #2.76
    44927 
    44928 2 models selected 
    44929 
    44930 > select add #2.73
    44931 
    44932 3 models selected 
    44933 Grouped 3 regions 
    44934 
    44935 > select clear
    44936 
    44937 > select #2.1
    44938 
    44939 1 model selected 
    44940 Opened Rev-
    44941 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    44942 as #16, grid size 200,200,200, pixel 2.14, shown at step 1, values float32 
    44943 Segmenting Rev-
    44944 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    44945 density threshold 0.007113 
    44946 Showing 52 region surfaces 
    44947 2394 watershed regions, grouped to 52 regions 
    44948 Showing Rev-
    44949 CJFlgYPlfAB-2_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    44950 - 52 regions, 52 surfaces 
    44951 
    44952 > hide #!2 models
    44953 
    44954 > surface dust #16 size 21.4
    44955 
    44956 The cached device pixel ratio value was stale on window expose. Please file a
    44957 QTBUG which explains how to reproduce. 
    44958 
    44959 > save /Users/shoichitachiyama/Desktop/tmp/proximal-disk.mrc models #16
    44960 
    44961 Segmenting proximal-disk.mrc, density threshold 0.007113 
    44962 Showing 52 region surfaces 
    44963 2394 watershed regions, grouped to 52 regions 
    44964 Showing proximal-disk.seg - 52 regions, 52 surfaces 
    44965 
    44966 > select #2.25
    44967 
    44968 1 model selected 
    44969 Ungrouped to 3 regions 
    44970 Ungrouped to 19 regions 
    44971 Ungrouped to 7 regions 
    44972 
    44973 > select #2.65
    44974 
    44975 1 model selected 
    44976 
    44977 > select add #2.17
    44978 
    44979 2 models selected 
    44980 
    44981 > select add #2.29
    44982 
    44983 3 models selected 
    44984 
    44985 > show #!14 models
    44986 
    44987 > hide #!14 models
    44988 
    44989 > show #!15 models
    44990 
    44991 > hide #!15 models
    44992 
    44993 > show #!14 models
    44994 
    44995 > hide #!14 models
    44996 
    44997 > show #!15 models
    44998 
    44999 > hide #!15 models
    45000 
    45001 > show #!14 models
    45002 
    45003 > hide #!14 models
    45004 
    45005 > show #!9 models
    45006 
    45007 > hide #!9 models
    45008 
    45009 > show #!9 models
    45010 
    45011 > hide #!9 models
    45012 
    45013 > show #!8 models
    45014 
    45015 > hide #!8 models
    45016 
    45017 > show #!7 models
    45018 
    45019 > hide #!7 models
    45020 
    45021 > show #!6 models
    45022 
    45023 > hide #!6 models
    45024 
    45025 > show #!1 models
    45026 
    45027 > hide #!1 models
    45028 
    45029 > hide #!2 models
    45030 
    45031 > show #!2 models
    45032 
    45033 > hide #!2 models
    45034 
    45035 > show #!3 models
    45036 
    45037 > hide #!3 models
    45038 
    45039 > show #!1 models
    45040 
    45041 Segmenting Rev-CJFlgYPlfAB-2.1A.mrc, density threshold 0.007113 
    45042 Showing 628 region surfaces 
    45043 38016 watershed regions, grouped to 628 regions 
    45044 Showing Rev-CJFlgYPlfAB-2.1A.seg - 628 regions, 628 surfaces 
    45045 Segmenting Rev-CJFlgYPlfAB-2.1A.mrc, density threshold 0.007113 
    45046 Showing 628 region surfaces 
    45047 38016 watershed regions, grouped to 628 regions 
    45048 Showing Rev-CJFlgYPlfAB-2.1A.seg - 628 regions, 628 surfaces 
    45049 
    45050 > select #2.105
    45051 
    45052 1 model selected 
    45053 
    45054 > select add #2.425
    45055 
    45056 2 models selected 
    45057 
    45058 > select add #2.396
    45059 
    45060 3 models selected 
    45061 
    45062 > select add #2.121
    45063 
    45064 4 models selected 
    45065 
    45066 > select add #2.11
    45067 
    45068 5 models selected 
    45069 
    45070 > select add #2.22
    45071 
    45072 6 models selected 
    45073 
    45074 > select add #2.228
    45075 
    45076 7 models selected 
    45077 Grouped 7 regions 
    45078 
    45079 > hide #!1 models
    45080 
    45081 > hide #!16 models
    45082 
    45083 > select add #2.8
    45084 
    45085 2 models selected 
    45086 
    45087 > select add #2.376
    45088 
    45089 3 models selected 
    45090 
    45091 > select add #2.262
    45092 
    45093 4 models selected 
    45094 
    45095 > select add #2.344
    45096 
    45097 5 models selected 
    45098 Grouped 5 regions 
    45099 
    45100 > select add #2.111
    45101 
    45102 2 models selected 
    45103 
    45104 > select add #2.204
    45105 
    45106 3 models selected 
    45107 
    45108 > select add #2.255
    45109 
    45110 4 models selected 
    45111 
    45112 > select add #2.117
    45113 
    45114 5 models selected 
    45115 
    45116 > select add #2.175
    45117 
    45118 6 models selected 
    45119 
    45120 > select add #2.113
    45121 
    45122 7 models selected 
    45123 
    45124 > select add #2.21
    45125 
    45126 8 models selected 
    45127 Grouped 8 regions 
    45128 
    45129 > select add #2.16
    45130 
    45131 2 models selected 
    45132 
    45133 > select subtract #2.16
    45134 
    45135 1 model selected 
    45136 
    45137 > select add #2.16
    45138 
    45139 2 models selected 
    45140 
    45141 > select add #2.93
    45142 
    45143 3 models selected 
    45144 
    45145 > select add #2.96
    45146 
    45147 4 models selected 
    45148 
    45149 > select add #2.130
    45150 
    45151 5 models selected 
    45152 
    45153 > select add #2.90
    45154 
    45155 6 models selected 
    45156 
    45157 > select add #2.101
    45158 
    45159 7 models selected 
    45160 
    45161 > select add #2.51
    45162 
    45163 8 models selected 
    45164 
    45165 > select add #2.205
    45166 
    45167 9 models selected 
    45168 
    45169 > select add #2.169
    45170 
    45171 10 models selected 
    45172 
    45173 > select add #2.281
    45174 
    45175 11 models selected 
    45176 
    45177 > select add #2.308
    45178 
    45179 12 models selected 
    45180 
    45181 > select add #2.225
    45182 
    45183 13 models selected 
    45184 
    45185 > select add #2.123
    45186 
    45187 14 models selected 
    45188 
    45189 > select add #2.356
    45190 
    45191 15 models selected 
    45192 
    45193 > select add #2.164
    45194 
    45195 16 models selected 
    45196 
    45197 > select add #2.132
    45198 
    45199 17 models selected 
    45200 
    45201 > select add #2.232
    45202 
    45203 18 models selected 
    45204 
    45205 > select add #2.178
    45206 
    45207 19 models selected 
    45208 
    45209 > select add #2.196
    45210 
    45211 20 models selected 
    45212 
    45213 > select add #2.259
    45214 
    45215 21 models selected 
    45216 
    45217 > select add #2.202
    45218 
    45219 22 models selected 
    45220 
    45221 > select add #2.168
    45222 
    45223 23 models selected 
    45224 Grouped 23 regions 
    45225 
    45226 > select add #2.146
    45227 
    45228 2 models selected 
    45229 
    45230 > select add #2.64
    45231 
    45232 3 models selected 
    45233 
    45234 > select add #2.317
    45235 
    45236 4 models selected 
    45237 
    45238 > select add #2.234
    45239 
    45240 5 models selected 
    45241 
    45242 > select add #2.104
    45243 
    45244 6 models selected 
    45245 
    45246 > select add #2.108
    45247 
    45248 7 models selected 
    45249 
    45250 > select add #2.100
    45251 
    45252 8 models selected 
    45253 
    45254 > select add #2.77
    45255 
    45256 9 models selected 
    45257 
    45258 > select add #2.78
    45259 
    45260 10 models selected 
    45261 
    45262 > select add #2.124
    45263 
    45264 11 models selected 
    45265 
    45266 > select add #2.46
    45267 
    45268 12 models selected 
    45269 
    45270 > select add #2.62
    45271 
    45272 13 models selected 
    45273 
    45274 > select add #2.35
    45275 
    45276 14 models selected 
    45277 
    45278 > select add #2.53
    45279 
    45280 15 models selected 
    45281 
    45282 > select add #2.392
    45283 
    45284 16 models selected 
    45285 
    45286 > select add #2.334
    45287 
    45288 17 models selected 
    45289 
    45290 > select add #2.115
    45291 
    45292 18 models selected 
    45293 
    45294 > select add #2.206
    45295 
    45296 19 models selected 
    45297 
    45298 > select add #2.143
    45299 
    45300 20 models selected 
    45301 
    45302 > select add #2.214
    45303 
    45304 21 models selected 
    45305 
    45306 > select add #2.66
    45307 
    45308 22 models selected 
    45309 
    45310 > select subtract #2.66
    45311 
    45312 21 models selected 
    45313 
    45314 > select add #2.199
    45315 
    45316 22 models selected 
    45317 
    45318 > select add #2.66
    45319 
    45320 23 models selected 
    45321 
    45322 > select add #2.135
    45323 
    45324 24 models selected 
    45325 
    45326 > select add #2.254
    45327 
    45328 25 models selected 
    45329 
    45330 > select subtract #2.64
    45331 
    45332 24 models selected 
    45333 
    45334 > select subtract #2.254
    45335 
    45336 23 models selected 
    45337 
    45338 > select subtract #2.146
    45339 
    45340 22 models selected 
    45341 Grouped 22 regions 
    45342 
    45343 > select add #2.252
    45344 
    45345 2 models selected 
    45346 
    45347 > select add #2.217
    45348 
    45349 3 models selected 
    45350 
    45351 > select add #2.224
    45352 
    45353 4 models selected 
    45354 
    45355 > select add #2.291
    45356 
    45357 5 models selected 
    45358 
    45359 > select add #2.167
    45360 
    45361 6 models selected 
    45362 
    45363 > select add #2.319
    45364 
    45365 7 models selected 
    45366 
    45367 > select add #2.294
    45368 
    45369 8 models selected 
    45370 
    45371 > select add #2.64
    45372 
    45373 9 models selected 
    45374 
    45375 > select add #2.146
    45376 
    45377 10 models selected 
    45378 
    45379 > select add #2.254
    45380 
    45381 11 models selected 
    45382 
    45383 > select add #2.10
    45384 
    45385 12 models selected 
    45386 
    45387 > select subtract #2.10
    45388 
    45389 11 models selected 
    45390 
    45391 > select add #2.10
    45392 
    45393 12 models selected 
    45394 
    45395 > select add #2.126
    45396 
    45397 13 models selected 
    45398 
    45399 > select add #2.94
    45400 
    45401 14 models selected 
    45402 
    45403 > select add #2.194
    45404 
    45405 15 models selected 
    45406 
    45407 > select add #2.52
    45408 
    45409 16 models selected 
    45410 
    45411 > select add #2.184
    45412 
    45413 17 models selected 
    45414 
    45415 > select add #2.69
    45416 
    45417 18 models selected 
    45418 
    45419 > select add #2.195
    45420 
    45421 19 models selected 
    45422 
    45423 > select add #2.127
    45424 
    45425 20 models selected 
    45426 
    45427 > select add #2.398
    45428 
    45429 21 models selected 
    45430 
    45431 > select add #2.379
    45432 
    45433 22 models selected 
    45434 
    45435 > select add #2.437
    45436 
    45437 23 models selected 
    45438 
    45439 > select subtract #2.252
    45440 
    45441 22 models selected 
    45442 
    45443 > select subtract #2.217
    45444 
    45445 21 models selected 
    45446 
    45447 > select subtract #2.224
    45448 
    45449 20 models selected 
    45450 
    45451 > select subtract #2.167
    45452 
    45453 19 models selected 
    45454 
    45455 > select subtract #2.291
    45456 
    45457 18 models selected 
    45458 
    45459 > select add #2.291
    45460 
    45461 19 models selected 
    45462 Grouped 19 regions 
    45463 
    45464 > select add #2.252
    45465 
    45466 2 models selected 
    45467 
    45468 > select add #2.217
    45469 
    45470 3 models selected 
    45471 
    45472 > select add #2.224
    45473 
    45474 4 models selected 
    45475 
    45476 > select add #2.167
    45477 
    45478 5 models selected 
    45479 
    45480 > select add #2.192
    45481 
    45482 6 models selected 
    45483 
    45484 > select add #2.439
    45485 
    45486 7 models selected 
    45487 Showing 550 region surfaces 
    45488 Grouped 7 regions 
    45489 
    45490 > select add #2.125
    45491 
    45492 2 models selected 
    45493 
    45494 > select add #2.32
    45495 
    45496 3 models selected 
    45497 
    45498 > select add #2.58
    45499 
    45500 4 models selected 
    45501 
    45502 > select add #2.155
    45503 
    45504 5 models selected 
    45505 
    45506 > select add #2.176
    45507 
    45508 6 models selected 
    45509 
    45510 > select add #2.2
    45511 
    45512 7 models selected 
    45513 
    45514 > select add #2.171
    45515 
    45516 8 models selected 
    45517 
    45518 > select add #2.103
    45519 
    45520 9 models selected 
    45521 
    45522 > select add #2.102
    45523 
    45524 10 models selected 
    45525 
    45526 > select add #2.151
    45527 
    45528 11 models selected 
    45529 
    45530 > select add #2.80
    45531 
    45532 12 models selected 
    45533 
    45534 > select add #2.83
    45535 
    45536 13 models selected 
    45537 
    45538 > select add #2.39
    45539 
    45540 14 models selected 
    45541 
    45542 > select add #2.98
    45543 
    45544 15 models selected 
    45545 
    45546 > select add #2.75
    45547 
    45548 16 models selected 
    45549 
    45550 > select add #2.84
    45551 
    45552 17 models selected 
    45553 
    45554 > select add #2.4
    45555 
    45556 18 models selected 
    45557 Grouped 18 regions 
    45558 
    45559 > select add #2.17
    45560 
    45561 2 models selected 
    45562 
    45563 > select add #2.282
    45564 
    45565 3 models selected 
    45566 
    45567 > select add #2.1
    45568 
    45569 4 models selected 
    45570 
    45571 > select add #2.137
    45572 
    45573 5 models selected 
    45574 
    45575 > select add #2.290
    45576 
    45577 6 models selected 
    45578 
    45579 > select add #2.210
    45580 
    45581 7 models selected 
    45582 
    45583 > select add #2.158
    45584 
    45585 8 models selected 
    45586 
    45587 > select add #2.85
    45588 
    45589 9 models selected 
    45590 
    45591 > select add #2.7
    45592 
    45593 10 models selected 
    45594 
    45595 > select add #2.251
    45596 
    45597 11 models selected 
    45598 
    45599 > select add #2.410
    45600 
    45601 12 models selected 
    45602 
    45603 > select add #2.248
    45604 
    45605 13 models selected 
    45606 
    45607 > select add #2.198
    45608 
    45609 14 models selected 
    45610 
    45611 > select add #2.15
    45612 
    45613 15 models selected 
    45614 
    45615 > select add #2.141
    45616 
    45617 16 models selected 
    45618 
    45619 > select add #2.275
    45620 
    45621 17 models selected 
    45622 
    45623 > select add #2.14
    45624 
    45625 18 models selected 
    45626 
    45627 > select add #2.5
    45628 
    45629 19 models selected 
    45630 
    45631 > select add #2.25
    45632 
    45633 20 models selected 
    45634 
    45635 > select add #2.60
    45636 
    45637 21 models selected 
    45638 
    45639 > select add #2.250
    45640 
    45641 22 models selected 
    45642 
    45643 > select add #2.19
    45644 
    45645 23 models selected 
    45646 
    45647 > select add #2.116
    45648 
    45649 24 models selected 
    45650 
    45651 > select add #2.185
    45652 
    45653 25 models selected 
    45654 
    45655 > select add #2.154
    45656 
    45657 26 models selected 
    45658 
    45659 > select add #2.119
    45660 
    45661 27 models selected 
    45662 
    45663 > select add #2.24
    45664 
    45665 28 models selected 
    45666 
    45667 > select add #2.426
    45668 
    45669 29 models selected 
    45670 
    45671 > select add #2.257
    45672 
    45673 30 models selected 
    45674 
    45675 > select add #2.450
    45676 
    45677 31 models selected 
    45678 
    45679 > select add #2.389
    45680 
    45681 32 models selected 
    45682 
    45683 > select add #2.286
    45684 
    45685 33 models selected 
    45686 
    45687 > select add #2.338
    45688 
    45689 34 models selected 
    45690 Grouped 34 regions 
    45691 
    45692 > select add #2.331
    45693 
    45694 2 models selected 
    45695 
    45696 > select add #2.272
    45697 
    45698 3 models selected 
    45699 
    45700 > select add #2.276
    45701 
    45702 4 models selected 
    45703 
    45704 > select add #2.264
    45705 
    45706 5 models selected 
    45707 
    45708 > select add #2.218
    45709 
    45710 6 models selected 
    45711 
    45712 > select add #2.357
    45713 
    45714 7 models selected 
    45715 
    45716 > select add #2.435
    45717 
    45718 8 models selected 
    45719 
    45720 > select add #2.349
    45721 
    45722 9 models selected 
    45723 
    45724 > select add #2.271
    45725 
    45726 10 models selected 
    45727 
    45728 > select add #2.110
    45729 
    45730 11 models selected 
    45731 
    45732 > select add #2.147
    45733 
    45734 12 models selected 
    45735 
    45736 > select add #2.303
    45737 
    45738 13 models selected 
    45739 
    45740 > select subtract #2.147
    45741 
    45742 12 models selected 
    45743 
    45744 > select add #2.173
    45745 
    45746 13 models selected 
    45747 
    45748 > select add #2.243
    45749 
    45750 14 models selected 
    45751 
    45752 > select add #2.343
    45753 
    45754 15 models selected 
    45755 
    45756 > select add #2.147
    45757 
    45758 16 models selected 
    45759 
    45760 > select subtract #2.303
    45761 
    45762 15 models selected 
    45763 
    45764 > select subtract #2.147
    45765 
    45766 14 models selected 
    45767 
    45768 > select add #2.87
    45769 
    45770 15 models selected 
    45771 
    45772 > select add #2.172
    45773 
    45774 16 models selected 
    45775 
    45776 > select add #2.447
    45777 
    45778 17 models selected 
    45779 
    45780 > select add #2.120
    45781 
    45782 18 models selected 
    45783 
    45784 > select add #2.353
    45785 
    45786 19 models selected 
    45787 
    45788 > select add #2.370
    45789 
    45790 20 models selected 
    45791 
    45792 > select add #2.463
    45793 
    45794 21 models selected 
    45795 
    45796 > select add #2.147
    45797 
    45798 22 models selected 
    45799 
    45800 > select add #2.303
    45801 
    45802 23 models selected 
    45803 
    45804 > select add #2.365
    45805 
    45806 24 models selected 
    45807 
    45808 > select add #2.79
    45809 
    45810 25 models selected 
    45811 
    45812 > select add #2.65
    45813 
    45814 26 models selected 
    45815 
    45816 > select add #2.306
    45817 
    45818 27 models selected 
    45819 
    45820 > select add #2.363
    45821 
    45822 28 models selected 
    45823 
    45824 > select add #2.159
    45825 
    45826 29 models selected 
    45827 
    45828 > select add #2.358
    45829 
    45830 30 models selected 
    45831 
    45832 > select add #2.233
    45833 
    45834 31 models selected 
    45835 
    45836 > select add #2.386
    45837 
    45838 32 models selected 
    45839 
    45840 > select add #2.487
    45841 
    45842 33 models selected 
    45843 
    45844 > select subtract #2.487
    45845 
    45846 32 models selected 
    45847 Grouped 32 regions 
    45848 
    45849 > select add #2.238
    45850 
    45851 2 models selected 
    45852 
    45853 > select add #2.391
    45854 
    45855 3 models selected 
    45856 Grouped 3 regions 
    45857 
    45858 > select add #2.118
    45859 
    45860 2 models selected 
    45861 
    45862 > select add #2.157
    45863 
    45864 3 models selected 
    45865 
    45866 > select subtract #2.157
    45867 
    45868 2 models selected 
    45869 
    45870 > select add #2.157
    45871 
    45872 3 models selected 
    45873 
    45874 > select add #2.241
    45875 
    45876 4 models selected 
    45877 
    45878 > select add #2.47
    45879 
    45880 5 models selected 
    45881 
    45882 > select add #2.81
    45883 
    45884 6 models selected 
    45885 
    45886 > select add #2.165
    45887 
    45888 7 models selected 
    45889 
    45890 > select add #2.197
    45891 
    45892 8 models selected 
    45893 
    45894 > select add #2.149
    45895 
    45896 9 models selected 
    45897 
    45898 > select add #2.161
    45899 
    45900 10 models selected 
    45901 
    45902 > select add #2.307
    45903 
    45904 11 models selected 
    45905 
    45906 > select add #2.190
    45907 
    45908 12 models selected 
    45909 
    45910 > select add #2.131
    45911 
    45912 13 models selected 
    45913 
    45914 > select add #2.44
    45915 
    45916 14 models selected 
    45917 
    45918 > select add #2.236
    45919 
    45920 15 models selected 
    45921 
    45922 > select add #2.37
    45923 
    45924 16 models selected 
    45925 
    45926 > select add #2.6
    45927 
    45928 17 models selected 
    45929 
    45930 > select add #2.180
    45931 
    45932 18 models selected 
    45933 Grouped 18 regions 
    45934 
    45935 > select add #2.43
    45936 
    45937 2 models selected 
    45938 
    45939 > select add #2.82
    45940 
    45941 3 models selected 
    45942 
    45943 > select add #2.29
    45944 
    45945 4 models selected 
    45946 
    45947 > select add #2.68
    45948 
    45949 5 models selected 
    45950 
    45951 > select add #2.27
    45952 
    45953 6 models selected 
    45954 
    45955 > select add #2.88
    45956 
    45957 7 models selected 
    45958 
    45959 > select add #2.86
    45960 
    45961 8 models selected 
    45962 
    45963 > select add #2.61
    45964 
    45965 9 models selected 
    45966 
    45967 > select add #2.287
    45968 
    45969 10 models selected 
    45970 
    45971 > select add #2.48
    45972 
    45973 11 models selected 
    45974 
    45975 > select add #2.226
    45976 
    45977 12 models selected 
    45978 
    45979 > select add #2.72
    45980 
    45981 13 models selected 
    45982 
    45983 > select add #2.67
    45984 
    45985 14 models selected 
    45986 
    45987 > select add #2.399
    45988 
    45989 15 models selected 
    45990 
    45991 > select add #2.55
    45992 
    45993 16 models selected 
    45994 
    45995 > select add #2.267
    45996 
    45997 17 models selected 
    45998 
    45999 > select add #2.361
    46000 
    46001 18 models selected 
    46002 
    46003 > select add #2.59
    46004 
    46005 19 models selected 
    46006 
    46007 > select add #2.26
    46008 
    46009 20 models selected 
    46010 
    46011 > select add #2.54
    46012 
    46013 21 models selected 
    46014 
    46015 > select add #2.129
    46016 
    46017 22 models selected 
    46018 
    46019 > select add #2.56
    46020 
    46021 23 models selected 
    46022 
    46023 > select add #2.170
    46024 
    46025 24 models selected 
    46026 
    46027 > select add #2.208
    46028 
    46029 25 models selected 
    46030 
    46031 > select add #2.42
    46032 
    46033 26 models selected 
    46034 
    46035 > select add #2.107
    46036 
    46037 27 models selected 
    46038 
    46039 > select add #2.33
    46040 
    46041 28 models selected 
    46042 
    46043 > select add #2.136
    46044 
    46045 29 models selected 
    46046 
    46047 > select add #2.89
    46048 
    46049 30 models selected 
    46050 
    46051 > select add #2.30
    46052 
    46053 31 models selected 
    46054 
    46055 > select add #2.150
    46056 
    46057 32 models selected 
    46058 
    46059 > select add #2.114
    46060 
    46061 33 models selected 
    46062 
    46063 > select add #2.133
    46064 
    46065 34 models selected 
    46066 
    46067 > select add #2.237
    46068 
    46069 35 models selected 
    46070 
    46071 > select add #2.510
    46072 
    46073 36 models selected 
    46074 
    46075 > select add #2.112
    46076 
    46077 37 models selected 
    46078 
    46079 > select add #2.222
    46080 
    46081 38 models selected 
    46082 
    46083 > select add #2.40
    46084 
    46085 39 models selected 
    46086 
    46087 > select add #2.139
    46088 
    46089 40 models selected 
    46090 
    46091 > select add #2.163
    46092 
    46093 41 models selected 
    46094 
    46095 > select add #2.36
    46096 
    46097 42 models selected 
    46098 
    46099 > select add #2.216
    46100 
    46101 43 models selected 
    46102 
    46103 > select add #2.134
    46104 
    46105 44 models selected 
    46106 
    46107 > select add #2.142
    46108 
    46109 45 models selected 
    46110 
    46111 > select add #2.160
    46112 
    46113 46 models selected 
    46114 
    46115 > select add #2.106
    46116 
    46117 47 models selected 
    46118 
    46119 > select add #2.99
    46120 
    46121 48 models selected 
    46122 
    46123 > select add #2.300
    46124 
    46125 49 models selected 
    46126 
    46127 > select add #2.401
    46128 
    46129 50 models selected 
    46130 
    46131 > select add #2.322
    46132 
    46133 51 models selected 
    46134 
    46135 > select add #2.203
    46136 
    46137 52 models selected 
    46138 
    46139 > select add #2.235
    46140 
    46141 53 models selected 
    46142 
    46143 > select subtract #2.235
    46144 
    46145 52 models selected 
    46146 
    46147 > select add #2.449
    46148 
    46149 53 models selected 
    46150 
    46151 > select add #2.258
    46152 
    46153 54 models selected 
    46154 
    46155 > select add #2.193
    46156 
    46157 55 models selected 
    46158 
    46159 > select add #2.235
    46160 
    46161 56 models selected 
    46162 
    46163 > select add #2.321
    46164 
    46165 57 models selected 
    46166 
    46167 > select add #2.182
    46168 
    46169 58 models selected 
    46170 
    46171 > select add #2.207
    46172 
    46173 59 models selected 
    46174 
    46175 > select add #2.179
    46176 
    46177 60 models selected 
    46178 
    46179 > select add #2.23
    46180 
    46181 61 models selected 
    46182 
    46183 > select add #2.95
    46184 
    46185 62 models selected 
    46186 
    46187 > select add #2.144
    46188 
    46189 63 models selected 
    46190 
    46191 > select add #2.18
    46192 
    46193 64 models selected 
    46194 
    46195 > select add #2.419
    46196 
    46197 65 models selected 
    46198 
    46199 > select add #2.38
    46200 
    46201 66 models selected 
    46202 
    46203 > select add #2.31
    46204 
    46205 67 models selected 
    46206 
    46207 > select add #2.246
    46208 
    46209 68 models selected 
    46210 
    46211 > select add #2.13
    46212 
    46213 69 models selected 
    46214 
    46215 > select add #2.244
    46216 
    46217 70 models selected 
    46218 
    46219 > select add #2.292
    46220 
    46221 71 models selected 
    46222 
    46223 > select add #2.330
    46224 
    46225 72 models selected 
    46226 
    46227 > select add #2.240
    46228 
    46229 73 models selected 
    46230 
    46231 > select add #2.201
    46232 
    46233 74 models selected 
    46234 
    46235 > select add #2.3
    46236 
    46237 75 models selected 
    46238 
    46239 > select add #2.148
    46240 
    46241 76 models selected 
    46242 
    46243 > select add #2.45
    46244 
    46245 77 models selected 
    46246 
    46247 > select add #2.265
    46248 
    46249 78 models selected 
    46250 
    46251 > select add #2.390
    46252 
    46253 79 models selected 
    46254 Grouped 79 regions 
    46255 
    46256 > select add #2.138
    46257 
    46258 2 models selected 
    46259 
    46260 > select add #2.385
    46261 
    46262 3 models selected 
    46263 
    46264 > select add #2.49
    46265 
    46266 4 models selected 
    46267 
    46268 > select add #2.301
    46269 
    46270 5 models selected 
    46271 
    46272 > select add #2.12
    46273 
    46274 6 models selected 
    46275 
    46276 > select add #2.315
    46277 
    46278 7 models selected 
    46279 
    46280 > select add #2.313
    46281 
    46282 8 models selected 
    46283 
    46284 > select add #2.34
    46285 
    46286 9 models selected 
    46287 
    46288 > select subtract #2.385
    46289 
    46290 8 models selected 
    46291 
    46292 > select add #2.122
    46293 
    46294 9 models selected 
    46295 
    46296 > select add #2.305
    46297 
    46298 10 models selected 
    46299 
    46300 > select add #2.156
    46301 
    46302 11 models selected 
    46303 
    46304 > select subtract #2.156
    46305 
    46306 10 models selected 
    46307 
    46308 > select add #2.323
    46309 
    46310 11 models selected 
    46311 
    46312 > select add #2.156
    46313 
    46314 12 models selected 
    46315 
    46316 > select add #2.152
    46317 
    46318 13 models selected 
    46319 
    46320 > select add #2.293
    46321 
    46322 14 models selected 
    46323 Grouped 14 regions 
    46324 
    46325 > select clear
    46326 
    46327 > select #2.1
    46328 
    46329 1 model selected 
    46330 
    46331 > select add #2.487
    46332 
    46333 2 models selected 
    46334 Grouped 2 regions 
    46335 
    46336 > select add #2.283
    46337 
    46338 2 models selected 
    46339 
    46340 > select add #2.441
    46341 
    46342 3 models selected 
    46343 
    46344 > select add #2.457
    46345 
    46346 4 models selected 
    46347 
    46348 > select add #2.316
    46349 
    46350 5 models selected 
    46351 Grouped 5 regions 
    46352 
    46353 > select clear
    46354 
    46355 Drag select of 50595, 1440 of 86216 triangles, 50625, 2312 of 64668 triangles,
    46356 50703, 9854 of 48856 triangles, 50718, 6774 of 56308 triangles, 50642, 26564
    46357 of 45568 triangles, 50694, 13036 of 51768 triangles, 50639, 1050 of 53396
    46358 triangles, 50613, 11192 of 51080 triangles, 50608, 32799 of 51844 triangles,
    46359 50592, 39492 of 52252 triangles, 50601, 1174 of 53600 triangles, 50630, 4541
    46360 of 43048 triangles, 50518, 2727 of 35744 triangles, 50582, 23960 of 33860
    46361 triangles, 50649, 32025 of 44352 triangles, 50710, 1784 of 31260 triangles,
    46362 50622, 13627 of 48372 triangles, 50637, 2441 of 28260 triangles, 50756, 156 of
    46363 37176 triangles, 50742, 4464 of 25104 triangles, 49784, 328 of 21576
    46364 triangles, 50765, 2332 of 31760 triangles, 50597, 19795 of 24652 triangles,
    46365 50607, 20490 of 25184 triangles, 50536, 18475 of 28036 triangles, 50650, 322
    46366 of 25876 triangles, 50653, 346 of 26040 triangles, 50523, 10341 of 13084
    46367 triangles, 50725, 796 of 23616 triangles, 50617, 238 of 17452 triangles,
    46368 50749, 3547 of 22184 triangles, 50614, 1719 of 21132 triangles, 49644, 4980 of
    46369 13992 triangles, 49838, 1110 of 9144 triangles, 50779, 1004 of 16216
    46370 triangles, 49831, 12392 of 15304 triangles, 50712, 8531 of 14916 triangles,
    46371 50538, 2786 of 11440 triangles, 50588, 2373 of 11052 triangles, 50629, 1905 of
    46372 11804 triangles, 50556, 1156 of 9924 triangles, 50730, 6174 of 9832 triangles,
    46373 50527, 8606 of 9340 triangles, 50720, 7364 of 11340 triangles, 50750, 2319 of
    46374 9040 triangles, 49681, 50716, 265 of 7632 triangles, 50598, 8501 of 8712
    46375 triangles, 50455, 117 of 6572 triangles, 50600, 375 of 8704 triangles, 50604,
    46376 4479 of 7340 triangles, 50734, 5593 of 7192 triangles, 50398, 814 of 6028
    46377 triangles, 50238, 6252 of 6652 triangles, 49810, 2031 of 6908 triangles,
    46378 50774, 4201 of 6520 triangles, 50764, 50732, 533 of 6840 triangles, 47684,
    46379 5212 of 5532 triangles, 50655, 6490 of 6660 triangles, 50522, 2426 of 6408
    46380 triangles, 49705, 3118 of 5296 triangles, 50302, 4324 of 4892 triangles,
    46381 46163, 3083 of 3152 triangles, 50731, 4500 of 4820 triangles, 50221, 1131 of
    46382 3844 triangles, 50704, 328 of 3836 triangles, 50773, 49964, 3131 of 4336
    46383 triangles, 46533, 906 of 2912 triangles, 50575, 50129, 452 of 2640 triangles,
    46384 50501, 83 of 3140 triangles, 50176, 263 of 2816 triangles, 50672, 791 of 2280
    46385 triangles, 50326, 50463, 50482, 1227 of 1604 triangles, 50577, 69 of 1568
    46386 triangles, 50315, 49603 
    46387 
    46388 > select clear
    46389 
    46390 > select #2.231
    46391 
    46392 1 model selected 
    46393 
    46394 > select add #2.1
    46395 
    46396 2 models selected 
    46397 
    46398 > select add #2.212
    46399 
    46400 3 models selected 
    46401 
    46402 > select add #2.496
    46403 
    46404 4 models selected 
    46405 
    46406 > select add #2.213
    46407 
    46408 5 models selected 
    46409 
    46410 > select add #2.191
    46411 
    46412 6 models selected 
    46413 
    46414 > select add #2.340
    46415 
    46416 7 models selected 
    46417 
    46418 > select add #2.274
    46419 
    46420 8 models selected 
    46421 
    46422 > select add #2.229
    46423 
    46424 9 models selected 
    46425 
    46426 > select add #2.288
    46427 
    46428 10 models selected 
    46429 
    46430 > select add #2.189
    46431 
    46432 11 models selected 
    46433 Grouped 11 regions 
    46434 
    46435 > select #2.1
    46436 
    46437 1 model selected 
    46438 
    46439 > select add #2.373
    46440 
    46441 2 models selected 
    46442 
    46443 > select add #2.162
    46444 
    46445 3 models selected 
    46446 
    46447 > select add #2.285
    46448 
    46449 4 models selected 
    46450 
    46451 > select add #2.326
    46452 
    46453 5 models selected 
    46454 
    46455 > select add #2.310
    46456 
    46457 6 models selected 
    46458 Grouped 6 regions 
    46459 
    46460 > select add #2.608
    46461 
    46462 2 models selected 
    46463 
    46464 > select add #2.603
    46465 
    46466 3 models selected 
    46467 Grouped 3 regions 
    46468 
    46469 > select clear
    46470 
    46471 > select #2.1
    46472 
    46473 1 model selected 
    46474 Showing 331 region surfaces 
    46475 Opened Rev-CJFlgYPlfAB-2.1A_imasked as #17, grid size 200,200,200, pixel 2.14,
    46476 shown at step 1, values float32 
    46477 Segmenting Rev-CJFlgYPlfAB-2.1A_imasked, density threshold 0.007113 
    46478 Showing 296 region surfaces 
    46479 20795 watershed regions, grouped to 296 regions 
    46480 Showing Rev-CJFlgYPlfAB-2.seg - 296 regions, 296 surfaces 
    46481 
    46482 > select #2.90
    46483 
    46484 1 model selected 
    46485 
    46486 > select add #2.20
    46487 
    46488 2 models selected 
    46489 
    46490 > select add #2.281
    46491 
    46492 3 models selected 
    46493 
    46494 > select add #2.276
    46495 
    46496 4 models selected 
    46497 
    46498 > select add #2.192
    46499 
    46500 5 models selected 
    46501 
    46502 > select add #2.269
    46503 
    46504 6 models selected 
    46505 
    46506 > select add #2.258
    46507 
    46508 7 models selected 
    46509 
    46510 > select add #2.215
    46511 
    46512 8 models selected 
    46513 
    46514 > select add #2.105
    46515 
    46516 9 models selected 
    46517 Grouped 9 regions 
    46518 
    46519 > hide #!17 models
    46520 
    46521 > select add #2.10
    46522 
    46523 2 models selected 
    46524 
    46525 > select add #2.8
    46526 
    46527 3 models selected 
    46528 
    46529 > select add #2.177
    46530 
    46531 4 models selected 
    46532 
    46533 > select add #2.211
    46534 
    46535 5 models selected 
    46536 
    46537 > select add #2.101
    46538 
    46539 6 models selected 
    46540 
    46541 > select add #2.154
    46542 
    46543 7 models selected 
    46544 
    46545 > select add #2.97
    46546 
    46547 8 models selected 
    46548 
    46549 > select add #2.19
    46550 
    46551 9 models selected 
    46552 
    46553 > select add #2.46
    46554 
    46555 10 models selected 
    46556 
    46557 > select add #2.86
    46558 
    46559 11 models selected 
    46560 
    46561 > select add #2.78
    46562 
    46563 12 models selected 
    46564 
    46565 > select add #2.113
    46566 
    46567 13 models selected 
    46568 
    46569 > select add #2.82
    46570 
    46571 14 models selected 
    46572 
    46573 > select add #2.79
    46574 
    46575 15 models selected 
    46576 
    46577 > select add #2.15
    46578 
    46579 16 models selected 
    46580 
    46581 > select add #2.247
    46582 
    46583 17 models selected 
    46584 
    46585 > select add #2.148
    46586 
    46587 18 models selected 
    46588 
    46589 > select add #2.169
    46590 
    46591 19 models selected 
    46592 
    46593 > select add #2.115
    46594 
    46595 20 models selected 
    46596 
    46597 > select add #2.107
    46598 
    46599 21 models selected 
    46600 
    46601 > select add #2.149
    46602 
    46603 22 models selected 
    46604 
    46605 > select add #2.178
    46606 
    46607 23 models selected 
    46608 
    46609 > select add #2.241
    46610 
    46611 24 models selected 
    46612 
    46613 > select add #2.226
    46614 
    46615 25 models selected 
    46616 
    46617 > select add #2.190
    46618 
    46619 26 models selected 
    46620 
    46621 > select add #2.261
    46622 
    46623 27 models selected 
    46624 
    46625 > select add #2.145
    46626 
    46627 28 models selected 
    46628 
    46629 > select add #2.196
    46630 
    46631 29 models selected 
    46632 
    46633 > select add #2.156
    46634 
    46635 30 models selected 
    46636 
    46637 > select subtract #2.156
    46638 
    46639 29 models selected 
    46640 
    46641 > select add #2.156
    46642 
    46643 30 models selected 
    46644 
    46645 > select add #2.214
    46646 
    46647 31 models selected 
    46648 
    46649 > select add #2.175
    46650 
    46651 32 models selected 
    46652 
    46653 > select add #2.127
    46654 
    46655 33 models selected 
    46656 
    46657 > select add #2.210
    46658 
    46659 34 models selected 
    46660 
    46661 > select add #2.118
    46662 
    46663 35 models selected 
    46664 
    46665 > select add #2.172
    46666 
    46667 36 models selected 
    46668 
    46669 > select add #2.59
    46670 
    46671 37 models selected 
    46672 
    46673 > select add #2.184
    46674 
    46675 38 models selected 
    46676 
    46677 > select add #2.125
    46678 
    46679 39 models selected 
    46680 
    46681 > select add #2.235
    46682 
    46683 40 models selected 
    46684 
    46685 > select add #2.179
    46686 
    46687 41 models selected 
    46688 
    46689 > select add #2.99
    46690 
    46691 42 models selected 
    46692 
    46693 > select add #2.248
    46694 
    46695 43 models selected 
    46696 
    46697 > select add #2.147
    46698 
    46699 44 models selected 
    46700 
    46701 > select add #2.232
    46702 
    46703 45 models selected 
    46704 
    46705 > select add #2.189
    46706 
    46707 46 models selected 
    46708 
    46709 > select add #2.186
    46710 
    46711 47 models selected 
    46712 
    46713 > select add #2.209
    46714 
    46715 48 models selected 
    46716 
    46717 > select subtract #2.178
    46718 
    46719 47 models selected 
    46720 
    46721 > select add #2.178
    46722 
    46723 48 models selected 
    46724 
    46725 > select add #2.275
    46726 
    46727 49 models selected 
    46728 
    46729 > select add #2.252
    46730 
    46731 50 models selected 
    46732 
    46733 > select add #2.277
    46734 
    46735 51 models selected 
    46736 
    46737 > select add #2.270
    46738 
    46739 52 models selected 
    46740 
    46741 > select add #2.284
    46742 
    46743 53 models selected 
    46744 
    46745 > select add #2.285
    46746 
    46747 54 models selected 
    46748 Grouped 54 regions 
    46749 
    46750 > select add #2.57
    46751 
    46752 2 models selected 
    46753 
    46754 > select add #2.95
    46755 
    46756 3 models selected 
    46757 
    46758 > select add #2.36
    46759 
    46760 4 models selected 
    46761 
    46762 > select add #2.120
    46763 
    46764 5 models selected 
    46765 
    46766 > select add #2.1
    46767 
    46768 6 models selected 
    46769 
    46770 > select add #2.182
    46771 
    46772 7 models selected 
    46773 
    46774 > select add #2.140
    46775 
    46776 8 models selected 
    46777 
    46778 > select add #2.16
    46779 
    46780 9 models selected 
    46781 
    46782 > select add #2.231
    46783 
    46784 10 models selected 
    46785 
    46786 > select add #2.71
    46787 
    46788 11 models selected 
    46789 
    46790 > select add #2.54
    46791 
    46792 12 models selected 
    46793 
    46794 > select add #2.109
    46795 
    46796 13 models selected 
    46797 
    46798 > select add #2.30
    46799 
    46800 14 models selected 
    46801 
    46802 > select add #2.108
    46803 
    46804 15 models selected 
    46805 
    46806 > select add #2.41
    46807 
    46808 16 models selected 
    46809 
    46810 > select add #2.155
    46811 
    46812 17 models selected 
    46813 
    46814 > select add #2.2
    46815 
    46816 18 models selected 
    46817 
    46818 > select add #2.198
    46819 
    46820 19 models selected 
    46821 
    46822 > select add #2.18
    46823 
    46824 20 models selected 
    46825 
    46826 > select add #2.89
    46827 
    46828 21 models selected 
    46829 
    46830 > select add #2.150
    46831 
    46832 22 models selected 
    46833 
    46834 > select add #2.4
    46835 
    46836 23 models selected 
    46837 
    46838 > select add #2.207
    46839 
    46840 24 models selected 
    46841 
    46842 > select add #2.227
    46843 
    46844 25 models selected 
    46845 Grouped 25 regions 
    46846 
    46847 > select clear
    46848 
    46849 > select #2.1
    46850 
    46851 1 model selected 
    46852 
    46853 > select add #2.257
    46854 
    46855 2 models selected 
    46856 
    46857 > select add #2.266
    46858 
    46859 3 models selected 
    46860 
    46861 > select add #2.128
    46862 
    46863 4 models selected 
    46864 
    46865 > select add #2.238
    46866 
    46867 5 models selected 
    46868 
    46869 > select add #2.153
    46870 
    46871 6 models selected 
    46872 
    46873 > select add #2.203
    46874 
    46875 7 models selected 
    46876 
    46877 > select add #2.201
    46878 
    46879 8 models selected 
    46880 
    46881 > select add #2.274
    46882 
    46883 9 models selected 
    46884 
    46885 > select add #2.75
    46886 
    46887 10 models selected 
    46888 
    46889 > select add #2.152
    46890 
    46891 11 models selected 
    46892 
    46893 > select add #2.94
    46894 
    46895 12 models selected 
    46896 
    46897 > select add #2.58
    46898 
    46899 13 models selected 
    46900 
    46901 > select add #2.170
    46902 
    46903 14 models selected 
    46904 
    46905 > select add #2.146
    46906 
    46907 15 models selected 
    46908 
    46909 > select add #2.69
    46910 
    46911 16 models selected 
    46912 
    46913 > select add #2.43
    46914 
    46915 17 models selected 
    46916 
    46917 > select add #2.202
    46918 
    46919 18 models selected 
    46920 
    46921 > select add #2.102
    46922 
    46923 19 models selected 
    46924 
    46925 > select add #2.139
    46926 
    46927 20 models selected 
    46928 
    46929 > select add #2.158
    46930 
    46931 21 models selected 
    46932 
    46933 > select add #2.6
    46934 
    46935 22 models selected 
    46936 
    46937 > select add #2.35
    46938 
    46939 23 models selected 
    46940 
    46941 > select add #2.195
    46942 
    46943 24 models selected 
    46944 
    46945 > select add #2.42
    46946 
    46947 25 models selected 
    46948 
    46949 > select add #2.114
    46950 
    46951 26 models selected 
    46952 
    46953 > select add #2.164
    46954 
    46955 27 models selected 
    46956 
    46957 > select add #2.138
    46958 
    46959 28 models selected 
    46960 
    46961 > select add #2.243
    46962 
    46963 29 models selected 
    46964 
    46965 > select add #2.130
    46966 
    46967 30 models selected 
    46968 
    46969 > select add #2.67
    46970 
    46971 31 models selected 
    46972 
    46973 > select add #2.265
    46974 
    46975 32 models selected 
    46976 
    46977 > select add #2.141
    46978 
    46979 33 models selected 
    46980 
    46981 > select add #2.104
    46982 
    46983 34 models selected 
    46984 
    46985 > select add #2.23
    46986 
    46987 35 models selected 
    46988 
    46989 > select add #2.73
    46990 
    46991 36 models selected 
    46992 
    46993 > select add #2.240
    46994 
    46995 37 models selected 
    46996 
    46997 > select add #2.291
    46998 
    46999 38 models selected 
    47000 
    47001 > select add #2.260
    47002 
    47003 39 models selected 
    47004 Grouped 39 regions 
    47005 
    47006 > select add #2.7
    47007 
    47008 2 models selected 
    47009 
    47010 > select add #2.206
    47011 
    47012 3 models selected 
    47013 
    47014 > select add #2.123
    47015 
    47016 4 models selected 
    47017 
    47018 > select add #2.171
    47019 
    47020 5 models selected 
    47021 
    47022 > select add #2.5
    47023 
    47024 6 models selected 
    47025 
    47026 > select add #2.221
    47027 
    47028 7 models selected 
    47029 Showing 173 region surfaces 
    47030 
    47031 > select clear
    47032 
    47033 > select #2.1
    47034 
    47035 1 model selected 
    47036 
    47037 > select #2.3
    47038 
    47039 1 model selected 
    47040 
    47041 > select add #2.12
    47042 
    47043 2 models selected 
    47044 
    47045 > select add #2.17
    47046 
    47047 3 models selected 
    47048 
    47049 > select add #2.11
    47050 
    47051 4 models selected 
    47052 Grouped 4 regions 
    47053 
    47054 > select #2.26
    47055 
    47056 1 model selected 
    47057 
    47058 > select add #2.121
    47059 
    47060 2 models selected 
    47061 
    47062 > select add #2.129
    47063 
    47064 3 models selected 
    47065 
    47066 > select add #2.106
    47067 
    47068 4 models selected 
    47069 
    47070 > select add #2.133
    47071 
    47072 5 models selected 
    47073 
    47074 > select add #2.45
    47075 
    47076 6 models selected 
    47077 
    47078 > select add #2.2
    47079 
    47080 7 models selected 
    47081 Grouped 7 regions 
    47082 
    47083 > select add #2.187
    47084 
    47085 2 models selected 
    47086 
    47087 > select add #2.216
    47088 
    47089 3 models selected 
    47090 
    47091 > select add #2.205
    47092 
    47093 4 models selected 
    47094 
    47095 > select add #2.251
    47096 
    47097 5 models selected 
    47098 
    47099 > select add #2.289
    47100 
    47101 6 models selected 
    47102 
    47103 > select add #2.212
    47104 
    47105 7 models selected 
    47106 
    47107 > select add #2.229
    47108 
    47109 8 models selected 
    47110 
    47111 > select add #2.282
    47112 
    47113 9 models selected 
    47114 
    47115 > select add #2.220
    47116 
    47117 10 models selected 
    47118 
    47119 > select add #2.222
    47120 
    47121 11 models selected 
    47122 
    47123 > select add #2.283
    47124 
    47125 12 models selected 
    47126 
    47127 > select add #2.262
    47128 
    47129 13 models selected 
    47130 
    47131 > select add #2.219
    47132 
    47133 14 models selected 
    47134 
    47135 > select add #2.237
    47136 
    47137 15 models selected 
    47138 
    47139 > select add #2.246
    47140 
    47141 16 models selected 
    47142 
    47143 > select add #2.74
    47144 
    47145 17 models selected 
    47146 
    47147 > select add #2.1
    47148 
    47149 18 models selected 
    47150 
    47151 > select add #2.204
    47152 
    47153 19 models selected 
    47154 
    47155 > select add #2.174
    47156 
    47157 20 models selected 
    47158 Grouped 20 regions 
    47159 
    47160 > select clear
    47161 
    47162 > select #2.1
    47163 
    47164 1 model selected 
    47165 
    47166 > select add #2.272
    47167 
    47168 2 models selected 
    47169 
    47170 > select add #2.253
    47171 
    47172 3 models selected 
    47173 
    47174 > select add #2.197
    47175 
    47176 4 models selected 
    47177 
    47178 > select add #2.263
    47179 
    47180 5 models selected 
    47181 
    47182 > select add #2.234
    47183 
    47184 6 models selected 
    47185 
    47186 > select add #2.267
    47187 
    47188 7 models selected 
    47189 
    47190 > select add #2.208
    47191 
    47192 8 models selected 
    47193 
    47194 > select add #2.206
    47195 
    47196 9 models selected 
    47197 
    47198 > select add #2.171
    47199 
    47200 10 models selected 
    47201 
    47202 > select add #2.123
    47203 
    47204 11 models selected 
    47205 
    47206 > select add #2.221
    47207 
    47208 12 models selected 
    47209 
    47210 > select add #2.5
    47211 
    47212 13 models selected 
    47213 
    47214 > select add #2.259
    47215 
    47216 14 models selected 
    47217 
    47218 > select add #2.13
    47219 
    47220 15 models selected 
    47221 
    47222 > select add #2.14
    47223 
    47224 16 models selected 
    47225 
    47226 > select subtract #2.272
    47227 
    47228 15 models selected 
    47229 
    47230 > select add #2.33
    47231 
    47232 16 models selected 
    47233 
    47234 > select add #2.272
    47235 
    47236 17 models selected 
    47237 
    47238 > select subtract #2.253
    47239 
    47240 16 models selected 
    47241 
    47242 > select subtract #2.263
    47243 
    47244 15 models selected 
    47245 
    47246 > select subtract #2.197
    47247 
    47248 14 models selected 
    47249 
    47250 > select add #2.263
    47251 
    47252 15 models selected 
    47253 
    47254 > select add #2.253
    47255 
    47256 16 models selected 
    47257 
    47258 > select subtract #2.234
    47259 
    47260 15 models selected 
    47261 
    47262 > select add #2.234
    47263 
    47264 16 models selected 
    47265 
    47266 > select add #2.197
    47267 
    47268 17 models selected 
    47269 
    47270 > select add #2.7
    47271 
    47272 18 models selected 
    47273 
    47274 > select add #2.271
    47275 
    47276 19 models selected 
    47277 
    47278 > select add #2.280
    47279 
    47280 20 models selected 
    47281 
    47282 > select add #2.250
    47283 
    47284 21 models selected 
    47285 
    47286 > select add #2.292
    47287 
    47288 22 models selected 
    47289 
    47290 > select add #2.287
    47291 
    47292 23 models selected 
    47293 Grouped 23 regions 
    47294 
    47295 > select clear
    47296 
    47297 > select #2.1
    47298 
    47299 1 model selected 
    47300 Opened Rev-CJFlgYPlfAB-2_imasked as #18, grid size 200,200,200, pixel 2.14,
    47301 shown at step 1, values float32 
    47302 
    47303 The cached device pixel ratio value was stale on window expose. Please file a
    47304 QTBUG which explains how to reproduce. 
    47305 
    47306 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Others.mrc models #18
    47307 
    47308 Opened Rev-CJFlgYPlfAB-2_imasked as #19, grid size 200,200,200, pixel 2.14,
    47309 shown at step 1, values float32 
    47310 Segmenting Rev-CJFlgYPlfAB-2_imasked, density threshold 0.007113 
    47311 Showing 122 region surfaces 
    47312 7061 watershed regions, grouped to 122 regions 
    47313 Showing Rev-CJFlgYPlfAB-2_imasked.seg - 122 regions, 122 surfaces 
    47314 
    47315 > hide #!18 models
    47316 
    47317 > select #2.13
    47318 
    47319 1 model selected 
    47320 
    47321 > select add #2.38
    47322 
    47323 2 models selected 
    47324 
    47325 > select add #2.79
    47326 
    47327 3 models selected 
    47328 
    47329 > select add #2.17
    47330 
    47331 4 models selected 
    47332 
    47333 > select add #2.42
    47334 
    47335 5 models selected 
    47336 
    47337 > select add #2.46
    47338 
    47339 6 models selected 
    47340 
    47341 > select add #2.73
    47342 
    47343 7 models selected 
    47344 
    47345 > select add #2.9
    47346 
    47347 8 models selected 
    47348 
    47349 > select add #2.28
    47350 
    47351 9 models selected 
    47352 
    47353 > select add #2.80
    47354 
    47355 10 models selected 
    47356 
    47357 > select add #2.18
    47358 
    47359 11 models selected 
    47360 
    47361 > select add #2.53
    47362 
    47363 12 models selected 
    47364 
    47365 > select add #2.37
    47366 
    47367 13 models selected 
    47368 
    47369 > select add #2.7
    47370 
    47371 14 models selected 
    47372 
    47373 > select add #2.44
    47374 
    47375 15 models selected 
    47376 
    47377 > select add #2.29
    47378 
    47379 16 models selected 
    47380 
    47381 > select add #2.77
    47382 
    47383 17 models selected 
    47384 
    47385 > select add #2.70
    47386 
    47387 18 models selected 
    47388 
    47389 > select add #2.49
    47390 
    47391 19 models selected 
    47392 
    47393 > select add #2.25
    47394 
    47395 20 models selected 
    47396 
    47397 > select add #2.32
    47398 
    47399 21 models selected 
    47400 
    47401 > select add #2.31
    47402 
    47403 22 models selected 
    47404 Grouped 22 regions 
    47405 
    47406 > select #2.52
    47407 
    47408 1 model selected 
    47409 
    47410 > select add #2.7
    47411 
    47412 2 models selected 
    47413 Grouped 2 regions 
    47414 
    47415 > select clear
    47416 
    47417 > select #2.7
    47418 
    47419 1 model selected 
    47420 
    47421 > hide #!19 models
    47422 
    47423 > select add #2.61
    47424 
    47425 2 models selected 
    47426 
    47427 > select add #2.57
    47428 
    47429 3 models selected 
    47430 
    47431 > select add #2.23
    47432 
    47433 4 models selected 
    47434 
    47435 > select add #2.54
    47436 
    47437 5 models selected 
    47438 
    47439 > select add #2.21
    47440 
    47441 6 models selected 
    47442 
    47443 > select add #2.39
    47444 
    47445 7 models selected 
    47446 
    47447 > select add #2.60
    47448 
    47449 8 models selected 
    47450 
    47451 > select add #2.19
    47452 
    47453 9 models selected 
    47454 
    47455 > select add #2.87
    47456 
    47457 10 models selected 
    47458 
    47459 > select add #2.48
    47460 
    47461 11 models selected 
    47462 
    47463 > select add #2.27
    47464 
    47465 12 models selected 
    47466 Grouped 12 regions 
    47467 
    47468 > select add #2.30
    47469 
    47470 2 models selected 
    47471 
    47472 > select add #2.74
    47473 
    47474 3 models selected 
    47475 
    47476 > select add #2.40
    47477 
    47478 4 models selected 
    47479 
    47480 > select add #2.65
    47481 
    47482 5 models selected 
    47483 
    47484 > select add #2.34
    47485 
    47486 6 models selected 
    47487 
    47488 > select add #2.5
    47489 
    47490 7 models selected 
    47491 
    47492 > select add #2.4
    47493 
    47494 8 models selected 
    47495 
    47496 > select add #2.6
    47497 
    47498 9 models selected 
    47499 
    47500 > select add #2.33
    47501 
    47502 10 models selected 
    47503 
    47504 > select add #2.62
    47505 
    47506 11 models selected 
    47507 
    47508 > select add #2.43
    47509 
    47510 12 models selected 
    47511 Grouped 12 regions 
    47512 
    47513 > select add #2.58
    47514 
    47515 2 models selected 
    47516 Grouped 2 regions 
    47517 
    47518 > select #2.12
    47519 
    47520 1 model selected 
    47521 
    47522 > select add #2.4
    47523 
    47524 2 models selected 
    47525 Grouped 2 regions 
    47526 
    47527 > select clear
    47528 
    47529 > select #2.104
    47530 
    47531 1 model selected 
    47532 
    47533 > select add #2.96
    47534 
    47535 2 models selected 
    47536 
    47537 > select add #2.110
    47538 
    47539 3 models selected 
    47540 
    47541 > select clear
    47542 
    47543 > select #2.4
    47544 
    47545 1 model selected 
    47546 
    47547 > select add #2.20
    47548 
    47549 2 models selected 
    47550 
    47551 > select add #2.11
    47552 
    47553 3 models selected 
    47554 
    47555 > select add #2.86
    47556 
    47557 4 models selected 
    47558 
    47559 > select add #2.56
    47560 
    47561 5 models selected 
    47562 
    47563 > select add #2.59
    47564 
    47565 6 models selected 
    47566 
    47567 > select add #2.16
    47568 
    47569 7 models selected 
    47570 
    47571 > select add #2.45
    47572 
    47573 8 models selected 
    47574 
    47575 > select add #2.92
    47576 
    47577 9 models selected 
    47578 Grouped 9 regions 
    47579 
    47580 > select #2.26
    47581 
    47582 1 model selected 
    47583 
    47584 > select add #2.67
    47585 
    47586 2 models selected 
    47587 
    47588 > select add #2.69
    47589 
    47590 3 models selected 
    47591 
    47592 > select add #2.71
    47593 
    47594 4 models selected 
    47595 Grouped 4 regions 
    47596 
    47597 > select add #2.4
    47598 
    47599 2 models selected 
    47600 Grouped 2 regions 
    47601 
    47602 > select #2.101
    47603 
    47604 1 model selected 
    47605 
    47606 > select add #2.64
    47607 
    47608 2 models selected 
    47609 
    47610 > select add #2.113
    47611 
    47612 3 models selected 
    47613 
    47614 > select add #2.102
    47615 
    47616 4 models selected 
    47617 
    47618 > select add #2.108
    47619 
    47620 5 models selected 
    47621 
    47622 > select add #2.8
    47623 
    47624 6 models selected 
    47625 
    47626 > select add #2.63
    47627 
    47628 7 models selected 
    47629 Grouped 7 regions 
    47630 
    47631 > select #2.85
    47632 
    47633 1 model selected 
    47634 
    47635 > select add #2.81
    47636 
    47637 2 models selected 
    47638 
    47639 > select add #2.90
    47640 
    47641 3 models selected 
    47642 
    47643 > select add #2.89
    47644 
    47645 4 models selected 
    47646 
    47647 > select add #2.97
    47648 
    47649 5 models selected 
    47650 
    47651 > select add #2.10
    47652 
    47653 6 models selected 
    47654 Grouped 6 regions 
    47655 
    47656 > select add #2.4
    47657 
    47658 2 models selected 
    47659 Grouped 2 regions 
    47660 
    47661 > select #2.109
    47662 
    47663 1 model selected 
    47664 
    47665 > select add #2.75
    47666 
    47667 2 models selected 
    47668 
    47669 > select add #2.5
    47670 
    47671 3 models selected 
    47672 
    47673 > select add #2.4
    47674 
    47675 4 models selected 
    47676 
    47677 > select add #2.15
    47678 
    47679 5 models selected 
    47680 Grouped 5 regions 
    47681 
    47682 > select #2.76
    47683 
    47684 1 model selected 
    47685 
    47686 > select add #2.98
    47687 
    47688 2 models selected 
    47689 
    47690 > select add #2.112
    47691 
    47692 3 models selected 
    47693 Grouped 3 regions 
    47694 
    47695 > select add #2.4
    47696 
    47697 2 models selected 
    47698 Grouped 2 regions 
    47699 
    47700 > select #2.114
    47701 
    47702 1 model selected 
    47703 
    47704 > select add #2.95
    47705 
    47706 2 models selected 
    47707 
    47708 > select add #2.14
    47709 
    47710 3 models selected 
    47711 
    47712 > select add #2.100
    47713 
    47714 4 models selected 
    47715 
    47716 > select add #2.4
    47717 
    47718 5 models selected 
    47719 
    47720 > select add #2.88
    47721 
    47722 6 models selected 
    47723 
    47724 > select add #2.3
    47725 
    47726 7 models selected 
    47727 
    47728 > select add #2.111
    47729 
    47730 8 models selected 
    47731 
    47732 > select add #2.2
    47733 
    47734 9 models selected 
    47735 
    47736 > select subtract #2.2
    47737 
    47738 8 models selected 
    47739 Grouped 8 regions 
    47740 
    47741 > select #2.115
    47742 
    47743 1 model selected 
    47744 
    47745 > select add #2.94
    47746 
    47747 2 models selected 
    47748 
    47749 > select add #2.3
    47750 
    47751 3 models selected 
    47752 Grouped 3 regions 
    47753 
    47754 > select clear
    47755 
    47756 > select #2.91
    47757 
    47758 1 model selected 
    47759 
    47760 > select add #2.78
    47761 
    47762 2 models selected 
    47763 
    47764 > select add #2.82
    47765 
    47766 3 models selected 
    47767 
    47768 > select add #2.93
    47769 
    47770 4 models selected 
    47771 
    47772 > select add #2.72
    47773 
    47774 5 models selected 
    47775 
    47776 > select add #2.107
    47777 
    47778 6 models selected 
    47779 
    47780 > select add #2.83
    47781 
    47782 7 models selected 
    47783 
    47784 > select add #2.105
    47785 
    47786 8 models selected 
    47787 
    47788 > select add #2.106
    47789 
    47790 9 models selected 
    47791 
    47792 > select clear
    47793 
    47794 > select #2.41
    47795 
    47796 1 model selected 
    47797 
    47798 > select add #2.3
    47799 
    47800 2 models selected 
    47801 
    47802 > select add #2.117
    47803 
    47804 3 models selected 
    47805 Grouped 3 regions 
    47806 
    47807 > select #2.2
    47808 
    47809 1 model selected 
    47810 Ungrouped to 2 regions 
    47811 
    47812 > select #2.4
    47813 
    47814 1 model selected 
    47815 Ungrouped to 18 regions 
    47816 
    47817 > select #2.19
    47818 
    47819 1 model selected 
    47820 
    47821 > select add #2.18
    47822 
    47823 2 models selected 
    47824 
    47825 > select #2.18
    47826 
    47827 1 model selected 
    47828 Ungrouped to 6 regions 
    47829 Ungrouped to 0 regions 
    47830 
    47831 > select #2.19
    47832 
    47833 1 model selected 
    47834 
    47835 > select add #2.8
    47836 
    47837 2 models selected 
    47838 
    47839 > select add #2.17
    47840 
    47841 3 models selected 
    47842 
    47843 > select add #2.10
    47844 
    47845 4 models selected 
    47846 
    47847 > select add #2.2
    47848 
    47849 5 models selected 
    47850 
    47851 > select add #2.26
    47852 
    47853 6 models selected 
    47854 Grouped 6 regions 
    47855 
    47856 > select add #2.3
    47857 
    47858 2 models selected 
    47859 Grouped 2 regions 
    47860 
    47861 > select #2.7
    47862 
    47863 1 model selected 
    47864 
    47865 > select add #2.2
    47866 
    47867 2 models selected 
    47868 
    47869 > select add #2.14
    47870 
    47871 3 models selected 
    47872 Grouped 3 regions 
    47873 
    47874 > select #2.2
    47875 
    47876 1 model selected 
    47877 Opened Rev-CJFlgYPlfAB-2_imasked_imasked as #20, grid size 200,200,200, pixel
    47878 2.14, shown at step 1, values float32 
    47879 Segmenting Rev-CJFlgYPlfAB-2_imasked_imasked, density threshold 0.007113 
    47880 Showing 89 region surfaces 
    47881 5462 watershed regions, grouped to 89 regions 
    47882 Showing Rev-CJFlgYPlfAB-2_imasked_imasked.seg - 89 regions, 89 surfaces 
    47883 
    47884 > hide #!2 models
    47885 
    47886 > volume gaussian #20 sDev 4
    47887 
    47888 Opened Rev-CJFlgYPlfAB-2_imasked_imasked gaussian as #21, grid size
    47889 200,200,200, pixel 2.14, shown at step 1, values float32 
    47890 
    47891 > volume #21 level 0.002865
    47892 
    47893 > close #21
    47894 
    47895 > volume gaussian #20 sDev 2
    47896 
    47897 Opened Rev-CJFlgYPlfAB-2_imasked_imasked gaussian as #21, grid size
    47898 200,200,200, pixel 2.14, shown at step 1, values float32 
    47899 
    47900 > volume #21 level 0.005583
    47901 
    47902 > volume #21 level 0.00407
    47903 
    47904 > close #21
    47905 
    47906 > volume gaussian #20 sDev 3
    47907 
    47908 Opened Rev-CJFlgYPlfAB-2_imasked_imasked gaussian as #21, grid size
    47909 200,200,200, pixel 2.14, shown at step 1, values float32 
    47910 
    47911 > volume #21 level 0.002332
    47912 
    47913 > hide #!21 models
    47914 
    47915 > show #!2 models
    47916 
    47917 > select #2.41
    47918 
    47919 1 model selected 
    47920 
    47921 > select add #2.5
    47922 
    47923 2 models selected 
    47924 
    47925 > select add #2.31
    47926 
    47927 3 models selected 
    47928 
    47929 > select add #2.7
    47930 
    47931 4 models selected 
    47932 
    47933 > select add #2.39
    47934 
    47935 5 models selected 
    47936 
    47937 > select add #2.11
    47938 
    47939 6 models selected 
    47940 Grouped 6 regions 
    47941 
    47942 The cached device pixel ratio value was stale on window expose. Please file a
    47943 QTBUG which explains how to reproduce. 
    47944 
    47945 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflABCD_Cage.mrc models #20
    47946 
    47947 Opened PflABCD_Cage_imasked as #22, grid size 200,200,200, pixel 2.14, shown
    47948 at step 1, values float32 
    47949 
    47950 The cached device pixel ratio value was stale on window expose. Please file a
    47951 QTBUG which explains how to reproduce. 
    47952 
    47953 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflC.mrc models #22
    47954 
    47955 Opened PflABCD_Cage_imasked as #23, grid size 200,200,200, pixel 2.14, shown
    47956 at step 1, values float32 
    47957 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    47958 Showing 83 region surfaces 
    47959 4415 watershed regions, grouped to 83 regions 
    47960 Showing PflABCD_Cage_imasked.seg - 83 regions, 83 surfaces 
    47961 
    47962 > hide #!22 models
    47963 
    47964 > select #2.36
    47965 
    47966 1 model selected 
    47967 
    47968 > select add #2.28
    47969 
    47970 2 models selected 
    47971 
    47972 > select add #2.59
    47973 
    47974 3 models selected 
    47975 
    47976 > select add #2.54
    47977 
    47978 4 models selected 
    47979 
    47980 > select add #2.12
    47981 
    47982 5 models selected 
    47983 
    47984 > select add #2.22
    47985 
    47986 6 models selected 
    47987 
    47988 > select add #2.60
    47989 
    47990 7 models selected 
    47991 
    47992 > select add #2.37
    47993 
    47994 8 models selected 
    47995 
    47996 > select add #2.13
    47997 
    47998 9 models selected 
    47999 
    48000 > select add #2.33
    48001 
    48002 10 models selected 
    48003 
    48004 > select add #2.58
    48005 
    48006 11 models selected 
    48007 
    48008 > select add #2.53
    48009 
    48010 12 models selected 
    48011 
    48012 > select add #2.18
    48013 
    48014 13 models selected 
    48015 
    48016 > hide #!23 models
    48017 
    48018 > show #!22 models
    48019 
    48020 > select clear
    48021 
    48022 > hide #!22 models
    48023 
    48024 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    48025 Showing 89 region surfaces 
    48026 5462 watershed regions, grouped to 89 regions 
    48027 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    48028 
    48029 > select #2.11
    48030 
    48031 1 model selected 
    48032 
    48033 > select add #2.39
    48034 
    48035 2 models selected 
    48036 
    48037 > select add #2.7
    48038 
    48039 3 models selected 
    48040 
    48041 > select add #2.31
    48042 
    48043 4 models selected 
    48044 
    48045 > select add #2.5
    48046 
    48047 5 models selected 
    48048 
    48049 > select add #2.41
    48050 
    48051 6 models selected 
    48052 
    48053 > select add #2.59
    48054 
    48055 7 models selected 
    48056 
    48057 > select add #2.37
    48058 
    48059 8 models selected 
    48060 
    48061 > select add #2.64
    48062 
    48063 9 models selected 
    48064 
    48065 > select subtract #2.37
    48066 
    48067 8 models selected 
    48068 
    48069 > select add #2.37
    48070 
    48071 9 models selected 
    48072 
    48073 > select add #2.43
    48074 
    48075 10 models selected 
    48076 
    48077 > select add #2.66
    48078 
    48079 11 models selected 
    48080 
    48081 > select add #2.16
    48082 
    48083 12 models selected 
    48084 
    48085 > select add #2.21
    48086 
    48087 13 models selected 
    48088 
    48089 > select add #2.15
    48090 
    48091 14 models selected 
    48092 
    48093 > select add #2.60
    48094 
    48095 15 models selected 
    48096 
    48097 > select add #2.25
    48098 
    48099 16 models selected 
    48100 
    48101 > select add #2.65
    48102 
    48103 17 models selected 
    48104 
    48105 > select add #2.32
    48106 
    48107 18 models selected 
    48108 
    48109 > select add #2.42
    48110 
    48111 19 models selected 
    48112 Grouped 19 regions 
    48113 
    48114 > select #2.52
    48115 
    48116 1 model selected 
    48117 
    48118 > select #2.45
    48119 
    48120 1 model selected 
    48121 
    48122 > select add #2.48
    48123 
    48124 2 models selected 
    48125 
    48126 > select add #2.52
    48127 
    48128 3 models selected 
    48129 Ungrouped to 19 regions 
    48130 Ungrouped to 45 regions 
    48131 Ungrouped to 26 regions 
    48132 Ungrouped to 0 regions 
    48133 
    48134 > select #2.129
    48135 
    48136 1 model selected 
    48137 
    48138 > select add #2.5
    48139 
    48140 2 models selected 
    48141 
    48142 > select add #2.138
    48143 
    48144 3 models selected 
    48145 
    48146 > select add #2.11
    48147 
    48148 4 models selected 
    48149 
    48150 > select subtract #2.11
    48151 
    48152 3 models selected 
    48153 
    48154 > select add #2.139
    48155 
    48156 4 models selected 
    48157 
    48158 > select add #2.128
    48159 
    48160 5 models selected 
    48161 
    48162 > select add #2.130
    48163 
    48164 6 models selected 
    48165 
    48166 > select add #2.93
    48167 
    48168 7 models selected 
    48169 Grouped 7 regions 
    48170 
    48171 > select #2.11
    48172 
    48173 1 model selected 
    48174 Ungrouped to 0 regions 
    48175 
    48176 > select clear
    48177 
    48178 > select #2.5
    48179 
    48180 1 model selected 
    48181 
    48182 > select clear
    48183 
    48184 > select #2.5
    48185 
    48186 1 model selected 
    48187 Opened PflABCD_Cage_imasked as #24, grid size 200,200,200, pixel 2.14, shown
    48188 at step 1, values float32 
    48189 
    48190 The cached device pixel ratio value was stale on window expose. Please file a
    48191 QTBUG which explains how to reproduce. 
    48192 
    48193 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflC.mrc models #24
    48194 
    48195 Opened PflABCD_Cage_imasked as #25, grid size 200,200,200, pixel 2.14, shown
    48196 at step 1, values float32 
    48197 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    48198 Showing 70 region surfaces 
    48199 4050 watershed regions, grouped to 70 regions 
    48200 Showing PflABCD_Cage_imasked.seg - 70 regions, 70 surfaces 
    48201 
    48202 > hide #!24 models
    48203 
    48204 > hide #!25 models
    48205 
    48206 > select #2.33
    48207 
    48208 1 model selected 
    48209 Ungrouped to 8 regions 
    48210 Ungrouped to 24 regions 
    48211 Ungrouped to 0 regions 
    48212 
    48213 > close #24-25
    48214 
    48215 > close #22
    48216 
    48217 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    48218 Showing 83 region surfaces 
    48219 4415 watershed regions, grouped to 83 regions 
    48220 Showing PflABCD_Cage_imasked.seg - 83 regions, 83 surfaces 
    48221 
    48222 > show #!23 models
    48223 
    48224 > hide #!23 models
    48225 
    48226 > show #!20 models
    48227 
    48228 > hide #!2 models
    48229 
    48230 > show #!2 models
    48231 
    48232 > close #21,23
    48233 
    48234 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    48235 Showing 89 region surfaces 
    48236 5462 watershed regions, grouped to 89 regions 
    48237 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    48238 
    48239 > select #2.28
    48240 
    48241 1 model selected 
    48242 
    48243 > select clear
    48244 
    48245 > select #2.41
    48246 
    48247 1 model selected 
    48248 
    48249 > select add #2.5
    48250 
    48251 2 models selected 
    48252 
    48253 > select add #2.31
    48254 
    48255 3 models selected 
    48256 
    48257 > select add #2.7
    48258 
    48259 4 models selected 
    48260 
    48261 > select add #2.39
    48262 
    48263 5 models selected 
    48264 
    48265 > select add #2.11
    48266 
    48267 6 models selected 
    48268 Grouped 6 regions 
    48269 
    48270 > hide #!20 models
    48271 
    48272 > select #2.48
    48273 
    48274 1 model selected 
    48275 
    48276 > select clear
    48277 
    48278 > select #2.45
    48279 
    48280 1 model selected 
    48281 
    48282 > select add #2.48
    48283 
    48284 2 models selected 
    48285 
    48286 > select add #2.52
    48287 
    48288 3 models selected 
    48289 Ungrouped to 19 regions 
    48290 Ungrouped to 45 regions 
    48291 Ungrouped to 26 regions 
    48292 Ungrouped to 0 regions 
    48293 
    48294 > select #2.32
    48295 
    48296 1 model selected 
    48297 
    48298 > select add #2.52
    48299 
    48300 2 models selected 
    48301 
    48302 > select add #2.107
    48303 
    48304 3 models selected 
    48305 
    48306 > select add #2.108
    48307 
    48308 4 models selected 
    48309 
    48310 > select add #2.104
    48311 
    48312 5 models selected 
    48313 
    48314 > select add #2.137
    48315 
    48316 6 models selected 
    48317 
    48318 > select add #2.139
    48319 
    48320 7 models selected 
    48321 
    48322 > select add #2.138
    48323 
    48324 8 models selected 
    48325 Showing 153 region surfaces 
    48326 
    48327 > select #2.5
    48328 
    48329 1 model selected 
    48330 
    48331 > select #2.52
    48332 
    48333 1 model selected 
    48334 
    48335 > select add #2.139
    48336 
    48337 2 models selected 
    48338 
    48339 > select add #2.138
    48340 
    48341 3 models selected 
    48342 
    48343 > select add #2.137
    48344 
    48345 4 models selected 
    48346 
    48347 > select add #2.95
    48348 
    48349 5 models selected 
    48350 
    48351 > select subtract #2.95
    48352 
    48353 4 models selected 
    48354 
    48355 > select add #2.149
    48356 
    48357 5 models selected 
    48358 
    48359 > select add #2.148
    48360 
    48361 6 models selected 
    48362 
    48363 > select add #2.104
    48364 
    48365 7 models selected 
    48366 
    48367 > select add #2.106
    48368 
    48369 8 models selected 
    48370 
    48371 > select add #2.107
    48372 
    48373 9 models selected 
    48374 
    48375 > select add #2.105
    48376 
    48377 10 models selected 
    48378 
    48379 > select add #2.140
    48380 
    48381 11 models selected 
    48382 
    48383 > select add #2.118
    48384 
    48385 12 models selected 
    48386 
    48387 > select add #2.119
    48388 
    48389 13 models selected 
    48390 Showing 153 region surfaces 
    48391 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    48392 Showing 89 region surfaces 
    48393 5462 watershed regions, grouped to 89 regions 
    48394 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    48395 
    48396 > select #2.7
    48397 
    48398 1 model selected 
    48399 
    48400 > select add #2.39
    48401 
    48402 2 models selected 
    48403 
    48404 > select add #2.11
    48405 
    48406 3 models selected 
    48407 
    48408 > select add #2.31
    48409 
    48410 4 models selected 
    48411 
    48412 > select add #2.5
    48413 
    48414 5 models selected 
    48415 
    48416 > select add #2.41
    48417 
    48418 6 models selected 
    48419 
    48420 > select add #2.32
    48421 
    48422 7 models selected 
    48423 
    48424 > select add #2.60
    48425 
    48426 8 models selected 
    48427 
    48428 > select add #2.25
    48429 
    48430 9 models selected 
    48431 
    48432 > select add #2.43
    48433 
    48434 10 models selected 
    48435 
    48436 > select add #2.37
    48437 
    48438 11 models selected 
    48439 
    48440 > select add #2.59
    48441 
    48442 12 models selected 
    48443 
    48444 > select add #2.64
    48445 
    48446 13 models selected 
    48447 
    48448 > select add #2.66
    48449 
    48450 14 models selected 
    48451 
    48452 > select add #2.65
    48453 
    48454 15 models selected 
    48455 
    48456 > select add #2.42
    48457 
    48458 16 models selected 
    48459 Grouped 16 regions 
    48460 
    48461 > select #2.45
    48462 
    48463 1 model selected 
    48464 Ungrouped to 8 regions 
    48465 Ungrouped to 25 regions 
    48466 Ungrouped to 0 regions 
    48467 Showing 100 region surfaces 
    48468 
    48469 > select #2.5
    48470 
    48471 1 model selected 
    48472 
    48473 > select add #2.43
    48474 
    48475 2 models selected 
    48476 Grouped 2 regions 
    48477 
    48478 > select #2.48
    48479 
    48480 1 model selected 
    48481 
    48482 > select add #2.52
    48483 
    48484 2 models selected 
    48485 Ungrouped to 11 regions 
    48486 Ungrouped to 20 regions 
    48487 Ungrouped to 26 regions 
    48488 Ungrouped to 0 regions 
    48489 
    48490 > select #2.111
    48491 
    48492 1 model selected 
    48493 
    48494 > select #2.48
    48495 
    48496 1 model selected 
    48497 
    48498 > select add #2.52
    48499 
    48500 2 models selected 
    48501 
    48502 > select add #2.5
    48503 
    48504 3 models selected 
    48505 
    48506 > select add #2.111
    48507 
    48508 4 models selected 
    48509 
    48510 > select subtract #2.111
    48511 
    48512 3 models selected 
    48513 Grouped 3 regions 
    48514 
    48515 > select #2.144
    48516 
    48517 1 model selected 
    48518 
    48519 > select add #2.5
    48520 
    48521 2 models selected 
    48522 Grouped 2 regions 
    48523 
    48524 > select subtract #2.146
    48525 
    48526 137 models selected 
    48527 
    48528 > select clear
    48529 
    48530 > select #2.68
    48531 
    48532 1 model selected 
    48533 
    48534 > select add #2.73
    48535 
    48536 2 models selected 
    48537 
    48538 > select clear
    48539 
    48540 > select #2.77
    48541 
    48542 1 model selected 
    48543 
    48544 > select #2.72
    48545 
    48546 1 model selected 
    48547 
    48548 > select clear
    48549 
    48550 > select #2.72
    48551 
    48552 1 model selected 
    48553 
    48554 > select add #2.73
    48555 
    48556 2 models selected 
    48557 
    48558 > select add #2.68
    48559 
    48560 3 models selected 
    48561 Ungrouped to 10 regions 
    48562 Ungrouped to 56 regions 
    48563 
    48564 > select #2.185
    48565 
    48566 1 model selected 
    48567 
    48568 > select add #2.188
    48569 
    48570 2 models selected 
    48571 
    48572 > select add #2.73
    48573 
    48574 3 models selected 
    48575 
    48576 > select add #2.181
    48577 
    48578 4 models selected 
    48579 
    48580 > select add #2.184
    48581 
    48582 5 models selected 
    48583 
    48584 > select add #2.67
    48585 
    48586 6 models selected 
    48587 
    48588 > select subtract #2.67
    48589 
    48590 5 models selected 
    48591 
    48592 > select add #2.150
    48593 
    48594 6 models selected 
    48595 
    48596 > select subtract #2.150
    48597 
    48598 5 models selected 
    48599 
    48600 > select add #2.179
    48601 
    48602 6 models selected 
    48603 
    48604 > select add #2.182
    48605 
    48606 7 models selected 
    48607 
    48608 > select add #2.174
    48609 
    48610 8 models selected 
    48611 
    48612 > select add #2.201
    48613 
    48614 9 models selected 
    48615 
    48616 > select add #2.202
    48617 
    48618 10 models selected 
    48619 
    48620 > select add #2.198
    48621 
    48622 11 models selected 
    48623 
    48624 > select add #2.200
    48625 
    48626 12 models selected 
    48627 
    48628 > select add #2.169
    48629 
    48630 13 models selected 
    48631 
    48632 > select add #2.173
    48633 
    48634 14 models selected 
    48635 
    48636 > select add #2.171
    48637 
    48638 15 models selected 
    48639 
    48640 > select add #2.176
    48641 
    48642 16 models selected 
    48643 
    48644 > select subtract #2.176
    48645 
    48646 15 models selected 
    48647 
    48648 > select add #2.199
    48649 
    48650 16 models selected 
    48651 
    48652 > select add #2.168
    48653 
    48654 17 models selected 
    48655 Grouped 17 regions 
    48656 
    48657 > select #2.176
    48658 
    48659 1 model selected 
    48660 Ungrouped to 15 regions 
    48661 Ungrouped to 6 regions 
    48662 Ungrouped to 0 regions 
    48663 
    48664 > select #2.48
    48665 
    48666 1 model selected 
    48667 
    48668 > select add #2.181
    48669 
    48670 2 models selected 
    48671 
    48672 > select add #2.112
    48673 
    48674 3 models selected 
    48675 
    48676 > select add #2.119
    48677 
    48678 4 models selected 
    48679 
    48680 > select add #2.174
    48681 
    48682 5 models selected 
    48683 Grouped 5 regions 
    48684 
    48685 > select #2.180
    48686 
    48687 1 model selected 
    48688 Ungrouped to 4 regions 
    48689 Ungrouped to 2 regions 
    48690 
    48691 > select #2.48
    48692 
    48693 1 model selected 
    48694 
    48695 > select add #2.112
    48696 
    48697 2 models selected 
    48698 Grouped 2 regions 
    48699 
    48700 > select add #2.187
    48701 
    48702 2 models selected 
    48703 
    48704 > select add #2.72
    48705 
    48706 3 models selected 
    48707 Grouped 3 regions 
    48708 
    48709 > select #2.67
    48710 
    48711 1 model selected 
    48712 
    48713 > select add #2.68
    48714 
    48715 2 models selected 
    48716 
    48717 > select add #2.150
    48718 
    48719 3 models selected 
    48720 Ungrouped to 10 regions 
    48721 Ungrouped to 37 regions 
    48722 Ungrouped to 79 regions 
    48723 Ungrouped to 49 regions 
    48724 Showing 320 region surfaces 
    48725 
    48726 > select clear
    48727 
    48728 > select #2.48
    48729 
    48730 1 model selected 
    48731 
    48732 > select add #2.208
    48733 
    48734 2 models selected 
    48735 
    48736 > select add #2.216
    48737 
    48738 3 models selected 
    48739 
    48740 > select add #2.213
    48741 
    48742 4 models selected 
    48743 
    48744 > select add #2.68
    48745 
    48746 5 models selected 
    48747 
    48748 > select add #2.227
    48749 
    48750 6 models selected 
    48751 
    48752 > select add #2.228
    48753 
    48754 7 models selected 
    48755 Grouped 7 regions 
    48756 
    48757 > select add #2.288
    48758 
    48759 2 models selected 
    48760 
    48761 > select add #2.289
    48762 
    48763 3 models selected 
    48764 
    48765 > select add #2.244
    48766 
    48767 4 models selected 
    48768 
    48769 > select add #2.298
    48770 
    48771 5 models selected 
    48772 
    48773 > select add #2.243
    48774 
    48775 6 models selected 
    48776 Grouped 6 regions 
    48777 Showing 309 region surfaces 
    48778 
    48779 > select clear
    48780 
    48781 > select #2.48
    48782 
    48783 1 model selected 
    48784 
    48785 > select add #2.177
    48786 
    48787 2 models selected 
    48788 
    48789 > select add #2.170
    48790 
    48791 3 models selected 
    48792 Grouped 3 regions 
    48793 
    48794 > select clear
    48795 
    48796 > select #2.48
    48797 
    48798 1 model selected 
    48799 Opened PflABCD_Cage_imasked as #21, grid size 200,200,200, pixel 2.14, shown
    48800 at step 1, values float32 
    48801 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    48802 Showing 89 region surfaces 
    48803 5341 watershed regions, grouped to 89 regions 
    48804 Showing PflABCD_Cage_imasked.seg - 89 regions, 89 surfaces 
    48805 
    48806 > hide #!2 models
    48807 
    48808 > show #!2 models
    48809 
    48810 > hide #!2 models
    48811 
    48812 The cached device pixel ratio value was stale on window expose. Please file a
    48813 QTBUG which explains how to reproduce. 
    48814 
    48815 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflABCD_Cage.mrc models #21
    48816 
    48817 Segmenting PflABCD_Cage.mrc, density threshold 0.007113 
    48818 Showing 89 region surfaces 
    48819 5341 watershed regions, grouped to 89 regions 
    48820 Showing PflABCD_Cage.seg - 89 regions, 89 surfaces 
    48821 
    48822 > volume gaussian #21 sDev 2.5
    48823 
    48824 Opened PflABCD_Cage.mrc gaussian as #22, grid size 200,200,200, pixel 2.14,
    48825 shown at step 1, values float32 
    48826 
    48827 > hide #!2 models
    48828 
    48829 > volume #22 level 0.005564
    48830 
    48831 > volume #22 level 0.003558
    48832 
    48833 > close #22
    48834 
    48835 > show #!2 models
    48836 
    48837 > select #2.42
    48838 
    48839 1 model selected 
    48840 
    48841 > select #2.11
    48842 
    48843 1 model selected 
    48844 
    48845 > select add #2.39
    48846 
    48847 2 models selected 
    48848 
    48849 > select add #2.7
    48850 
    48851 3 models selected 
    48852 
    48853 > select add #2.31
    48854 
    48855 4 models selected 
    48856 
    48857 > select add #2.5
    48858 
    48859 5 models selected 
    48860 
    48861 > select add #2.41
    48862 
    48863 6 models selected 
    48864 
    48865 > select add #2.52
    48866 
    48867 7 models selected 
    48868 
    48869 > select add #2.48
    48870 
    48871 8 models selected 
    48872 
    48873 > select add #2.45
    48874 
    48875 9 models selected 
    48876 Grouped 9 regions 
    48877 Opened PflABCD_Cage_imasked as #22, grid size 200,200,200, pixel 2.14, shown
    48878 at step 1, values float32 
    48879 
    48880 The cached device pixel ratio value was stale on window expose. Please file a
    48881 QTBUG which explains how to reproduce. 
    48882 
    48883 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflCD.mrc models #22
    48884 
    48885 Opened PflABCD_Cage_imasked as #23, grid size 200,200,200, pixel 2.14, shown
    48886 at step 1, values float32 
    48887 Segmenting PflABCD_Cage_imasked, density threshold 0.007113 
    48888 Showing 80 region surfaces 
    48889 4222 watershed regions, grouped to 80 regions 
    48890 Showing PflABCD_Cage_imasked.seg - 80 regions, 80 surfaces 
    48891 
    48892 > hide #!22 models
    48893 
    48894 > hide #!23 models
    48895 
    48896 > select #2.36
    48897 
    48898 1 model selected 
    48899 
    48900 > select add #2.28
    48901 
    48902 2 models selected 
    48903 
    48904 > select add #2.56
    48905 
    48906 3 models selected 
    48907 
    48908 > select add #2.51
    48909 
    48910 4 models selected 
    48911 
    48912 > select add #2.22
    48913 
    48914 5 models selected 
    48915 
    48916 > select add #2.57
    48917 
    48918 6 models selected 
    48919 
    48920 > select add #2.37
    48921 
    48922 7 models selected 
    48923 
    48924 > select add #2.33
    48925 
    48926 8 models selected 
    48927 
    48928 > select add #2.50
    48929 
    48930 9 models selected 
    48931 
    48932 > select add #2.55
    48933 
    48934 10 models selected 
    48935 
    48936 > select add #2.18
    48937 
    48938 11 models selected 
    48939 
    48940 > select add #2.13
    48941 
    48942 12 models selected 
    48943 
    48944 > select add #2.12
    48945 
    48946 13 models selected 
    48947 
    48948 > select add #2.31
    48949 
    48950 14 models selected 
    48951 
    48952 > select add #2.24
    48953 
    48954 15 models selected 
    48955 
    48956 > select add #2.25
    48957 
    48958 16 models selected 
    48959 Grouped 16 regions 
    48960 Opened PflABCD_Cage_imasked_imasked as #24, grid size 200,200,200, pixel 2.14,
    48961 shown at step 1, values float32 
    48962 
    48963 The cached device pixel ratio value was stale on window expose. Please file a
    48964 QTBUG which explains how to reproduce. 
    48965 
    48966 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflC.mrc models #24
    48967 
    48968 Opened PflABCD_Cage_imasked_imasked as #25, grid size 200,200,200, pixel 2.14,
    48969 shown at step 1, values float32 
    48970 Segmenting PflABCD_Cage_imasked_imasked, density threshold 0.007113 
    48971 Showing 65 region surfaces 
    48972 3706 watershed regions, grouped to 65 regions 
    48973 Showing PflABCD_Cage_imasked_imasked.seg - 65 regions, 65 surfaces 
    48974 
    48975 > hide #!24 models
    48976 
    48977 > select #2.14
    48978 
    48979 1 model selected 
    48980 
    48981 > select add #2.15
    48982 
    48983 2 models selected 
    48984 
    48985 > select add #2.19
    48986 
    48987 3 models selected 
    48988 Ungrouped to 14 regions 
    48989 
    48990 > select subtract #2.67
    48991 
    48992 13 models selected 
    48993 
    48994 > select subtract #2.69
    48995 
    48996 12 models selected 
    48997 
    48998 > select subtract #2.74
    48999 
    49000 11 models selected 
    49001 
    49002 > select subtract #2.68
    49003 
    49004 10 models selected 
    49005 
    49006 > select subtract #2.78
    49007 
    49008 9 models selected 
    49009 
    49010 > select subtract #2.79
    49011 
    49012 8 models selected 
    49013 
    49014 > select subtract #2.77
    49015 
    49016 7 models selected 
    49017 
    49018 > select add #2.77
    49019 
    49020 8 models selected 
    49021 
    49022 > select subtract #2.75
    49023 
    49024 7 models selected 
    49025 
    49026 > select subtract #2.77
    49027 
    49028 6 models selected 
    49029 Grouped 6 regions 
    49030 
    49031 > select #2.77
    49032 
    49033 1 model selected 
    49034 Ungrouped to 6 regions 
    49035 
    49036 > select subtract #2.72
    49037 
    49038 5 models selected 
    49039 
    49040 > select subtract #2.71
    49041 
    49042 4 models selected 
    49043 Grouped 4 regions 
    49044 
    49045 > select #2.14
    49046 
    49047 1 model selected 
    49048 
    49049 > select add #2.15
    49050 
    49051 2 models selected 
    49052 
    49053 > select #2.14
    49054 
    49055 1 model selected 
    49056 Ungrouped to 6 regions 
    49057 
    49058 > select subtract #2.66
    49059 
    49060 5 models selected 
    49061 
    49062 > select subtract #2.70
    49063 
    49064 4 models selected 
    49065 
    49066 > select subtract #2.76
    49067 
    49068 3 models selected 
    49069 Ungrouped to 11 regions 
    49070 
    49071 > select subtract #2.82
    49072 
    49073 10 models selected 
    49074 Grouped 10 regions 
    49075 
    49076 > select add #2.82
    49077 
    49078 2 models selected 
    49079 
    49080 > select add #2.66
    49081 
    49082 3 models selected 
    49083 
    49084 > select add #2.70
    49085 
    49086 4 models selected 
    49087 
    49088 > select #2.66
    49089 
    49090 1 model selected 
    49091 
    49092 > select add #2.70
    49093 
    49094 2 models selected 
    49095 
    49096 > select clear
    49097 
    49098 > select #2.70
    49099 
    49100 1 model selected 
    49101 Ungrouped to 8 regions 
    49102 Ungrouped to 0 regions 
    49103 
    49104 > select #2.66
    49105 
    49106 1 model selected 
    49107 
    49108 > select add #2.84
    49109 
    49110 2 models selected 
    49111 
    49112 > select add #2.81
    49113 
    49114 3 models selected 
    49115 
    49116 > select add #2.76
    49117 
    49118 4 models selected 
    49119 Grouped 4 regions 
    49120 
    49121 > hide #!25 models
    49122 
    49123 > select add #2.86
    49124 
    49125 2 models selected 
    49126 
    49127 > select add #2.85
    49128 
    49129 3 models selected 
    49130 
    49131 > select add #2.77
    49132 
    49133 4 models selected 
    49134 
    49135 > select add #2.83
    49136 
    49137 5 models selected 
    49138 
    49139 > select add #2.15
    49140 
    49141 6 models selected 
    49142 
    49143 > select add #2.14
    49144 
    49145 7 models selected 
    49146 Grouped 7 regions 
    49147 Ungrouped to 7 regions 
    49148 
    49149 > select subtract #2.77
    49150 
    49151 6 models selected 
    49152 Grouped 6 regions 
    49153 
    49154 > select clear
    49155 
    49156 > select #2.77
    49157 
    49158 1 model selected 
    49159 
    49160 > select #2.14
    49161 
    49162 1 model selected 
    49163 
    49164 > select #2.77
    49165 
    49166 1 model selected 
    49167 Ungrouped to 10 regions 
    49168 
    49169 > select subtract #2.15
    49170 
    49171 9 models selected 
    49172 Grouped 9 regions 
    49173 
    49174 > select add #2.14
    49175 
    49176 2 models selected 
    49177 Grouped 2 regions 
    49178 
    49179 > select clear
    49180 
    49181 > select #2.14
    49182 
    49183 1 model selected 
    49184 Opened PflABCD_Cage_imasked_imasked_imasked as #26, grid size 200,200,200,
    49185 pixel 2.14, shown at step 1, values float32 
    49186 
    49187 The cached device pixel ratio value was stale on window expose. Please file a
    49188 QTBUG which explains how to reproduce. 
    49189 
    49190 > save /Users/shoichitachiyama/Desktop/tmp/REDO/MotBpg.mrc models #26
    49191 
    49192 Opened PflABCD_Cage_imasked_imasked_imasked as #27, grid size 200,200,200,
    49193 pixel 2.14, shown at step 1, values float32 
    49194 Segmenting PflABCD_Cage_imasked_imasked_imasked, density threshold 0.007113 
    49195 Showing 62 region surfaces 
    49196 3661 watershed regions, grouped to 62 regions 
    49197 Showing PflABCD_Cage_imasked_imasked_imasked.seg - 62 regions, 62 surfaces 
    49198 
    49199 > hide #!26 models
    49200 
    49201 > select #2.16
    49202 
    49203 1 model selected 
    49204 
    49205 > select add #2.35
    49206 
    49207 2 models selected 
    49208 
    49209 > select add #2.57
    49210 
    49211 3 models selected 
    49212 
    49213 > select add #2.19
    49214 
    49215 4 models selected 
    49216 
    49217 > select add #2.23
    49218 
    49219 5 models selected 
    49220 
    49221 > select add #2.25
    49222 
    49223 6 models selected 
    49224 
    49225 > select add #2.24
    49226 
    49227 7 models selected 
    49228 Grouped 7 regions 
    49229 
    49230 > select add #2.21
    49231 
    49232 2 models selected 
    49233 
    49234 > select add #2.30
    49235 
    49236 3 models selected 
    49237 
    49238 > select subtract #2.30
    49239 
    49240 2 models selected 
    49241 
    49242 > select add #2.30
    49243 
    49244 3 models selected 
    49245 
    49246 > select add #2.44
    49247 
    49248 4 models selected 
    49249 
    49250 > select add #2.39
    49251 
    49252 5 models selected 
    49253 Grouped 5 regions 
    49254 
    49255 > hide #!27 models
    49256 
    49257 Opened PflABCD_Cage_imasked_imasked_imasked_imasked as #28, grid size
    49258 200,200,200, pixel 2.14, shown at step 1, values float32 
    49259 
    49260 The cached device pixel ratio value was stale on window expose. Please file a
    49261 QTBUG which explains how to reproduce. 
    49262 
    49263 > save /Users/shoichitachiyama/Desktop/tmp/REDO/PflAFlgY.mrc models #28
    49264 
    49265 Opened PflABCD_Cage_imasked_imasked_imasked_imasked as #29, grid size
    49266 200,200,200, pixel 2.14, shown at step 1, values float32 
    49267 Segmenting PflABCD_Cage_imasked_imasked_imasked_imasked, density threshold
    49268 0.007113 
    49269 Showing 50 region surfaces 
    49270 3293 watershed regions, grouped to 50 regions 
    49271 Showing PflABCD_Cage_imasked_imasked_imasked_imasked.seg - 50 regions, 50
    49272 surfaces 
    49273 
    49274 > hide #!28 models
    49275 
    49276 > select #2.1
    49277 
    49278 1 model selected 
    49279 
    49280 > select add #2.36
    49281 
    49282 2 models selected 
    49283 Grouped 2 regions 
    49284 
    49285 > select #2.18
    49286 
    49287 1 model selected 
    49288 Ungrouped to 3 regions 
    49289 
    49290 > select #2.36
    49291 
    49292 1 model selected 
    49293 Ungrouped to 10 regions 
    49294 
    49295 > select #2.1
    49296 
    49297 1 model selected 
    49298 
    49299 > select add #2.54
    49300 
    49301 2 models selected 
    49302 
    49303 > select add #2.18
    49304 
    49305 3 models selected 
    49306 
    49307 > hide #!29 models
    49308 
    49309 Grouped 3 regions 
    49310 
    49311 > select #2.10
    49312 
    49313 1 model selected 
    49314 
    49315 > select add #2.13
    49316 
    49317 2 models selected 
    49318 
    49319 > select add #2.26
    49320 
    49321 3 models selected 
    49322 
    49323 > select subtract #2.13
    49324 
    49325 2 models selected 
    49326 Grouped 2 regions 
    49327 
    49328 > select #2.33
    49329 
    49330 1 model selected 
    49331 Ungrouped to 3 regions 
    49332 Ungrouped to 7 regions 
    49333 
    49334 > select #2.10
    49335 
    49336 1 model selected 
    49337 
    49338 > select add #2.63
    49339 
    49340 2 models selected 
    49341 
    49342 > select add #2.64
    49343 
    49344 3 models selected 
    49345 Grouped 3 regions 
    49346 
    49347 > select #2.10
    49348 
    49349 1 model selected 
    49350 
    49351 > select #2.65
    49352 
    49353 1 model selected 
    49354 Ungrouped to 0 regions 
    49355 
    49356 > select #2.13
    49357 
    49358 1 model selected 
    49359 Ungrouped to 3 regions 
    49360 Ungrouped to 15 regions 
    49361 Ungrouped to 28 regions 
    49362 
    49363 > select #2.10
    49364 
    49365 1 model selected 
    49366 
    49367 > select add #2.85
    49368 
    49369 2 models selected 
    49370 
    49371 > select add #2.88
    49372 
    49373 3 models selected 
    49374 
    49375 > select add #2.86
    49376 
    49377 4 models selected 
    49378 
    49379 > select add #2.89
    49380 
    49381 5 models selected 
    49382 
    49383 > select add #2.95
    49384 
    49385 6 models selected 
    49386 
    49387 > select add #2.69
    49388 
    49389 7 models selected 
    49390 
    49391 > select add #2.94
    49392 
    49393 8 models selected 
    49394 
    49395 > select add #2.76
    49396 
    49397 9 models selected 
    49398 
    49399 > select add #2.74
    49400 
    49401 10 models selected 
    49402 Grouped 10 regions 
    49403 
    49404 > select #2.66
    49405 
    49406 1 model selected 
    49407 
    49408 > select add #2.10
    49409 
    49410 2 models selected 
    49411 Grouped 2 regions 
    49412 
    49413 > select #2.54
    49414 
    49415 1 model selected 
    49416 Ungrouped to 2 regions 
    49417 Ungrouped to 0 regions 
    49418 
    49419 > select #2.13
    49420 
    49421 1 model selected 
    49422 
    49423 > select add #2.10
    49424 
    49425 2 models selected 
    49426 Grouped 2 regions 
    49427 
    49428 > select add #2.1
    49429 
    49430 2 models selected 
    49431 
    49432 > select clear
    49433 
    49434 > select #2.4
    49435 
    49436 1 model selected 
    49437 
    49438 > select #2.37
    49439 
    49440 1 model selected 
    49441 Ungrouped to 7 regions 
    49442 Ungrouped to 2 regions 
    49443 Ungrouped to 0 regions 
    49444 
    49445 > select #2.72
    49446 
    49447 1 model selected 
    49448 
    49449 > select add #2.4
    49450 
    49451 2 models selected 
    49452 
    49453 > select add #2.27
    49454 
    49455 3 models selected 
    49456 Grouped 3 regions 
    49457 
    49458 > select #2.47
    49459 
    49460 1 model selected 
    49461 
    49462 > select #2.47
    49463 
    49464 1 model selected 
    49465 Ungrouped to 2 regions 
    49466 Ungrouped to 5 regions 
    49467 Ungrouped to 2 regions 
    49468 Ungrouped to 0 regions 
    49469 
    49470 > select #2.73
    49471 
    49472 1 model selected 
    49473 
    49474 > select add #2.74
    49475 
    49476 2 models selected 
    49477 
    49478 > select add #2.4
    49479 
    49480 3 models selected 
    49481 Grouped 3 regions 
    49482 
    49483 > select #2.2
    49484 
    49485 1 model selected 
    49486 Ungrouped to 3 regions 
    49487 Ungrouped to 19 regions 
    49488 Ungrouped to 27 regions 
    49489 Ungrouped to 11 regions 
    49490 Ungrouped to 0 regions 
    49491 Ungrouped to 43 regions 
    49492 
    49493 > select #2.133
    49494 
    49495 1 model selected 
    49496 
    49497 > select add #2.114
    49498 
    49499 2 models selected 
    49500 
    49501 > select add #2.116
    49502 
    49503 3 models selected 
    49504 
    49505 > select add #2.129
    49506 
    49507 4 models selected 
    49508 
    49509 > select add #2.4
    49510 
    49511 5 models selected 
    49512 Grouped 5 regions 
    49513 
    49514 > select add #2.109
    49515 
    49516 2 models selected 
    49517 Grouped 2 regions 
    49518 
    49519 > select #2.160
    49520 
    49521 1 model selected 
    49522 
    49523 > select add #2.125
    49524 
    49525 2 models selected 
    49526 
    49527 > select add #2.3
    49528 
    49529 3 models selected 
    49530 
    49531 > select add #2.126
    49532 
    49533 4 models selected 
    49534 Grouped 4 regions 
    49535 
    49536 > select add #2.132
    49537 
    49538 2 models selected 
    49539 
    49540 > select add #2.159
    49541 
    49542 3 models selected 
    49543 Grouped 3 regions 
    49544 
    49545 > select clear
    49546 
    49547 > select #2.3
    49548 
    49549 1 model selected 
    49550 
    49551 > select add #2.4
    49552 
    49553 2 models selected 
    49554 
    49555 > select add #2.10
    49556 
    49557 3 models selected 
    49558 
    49559 > select add #2.1
    49560 
    49561 4 models selected 
    49562 
    49563 > select clear
    49564 
    49565 > select #2.4
    49566 
    49567 1 model selected 
    49568 Ungrouped to 2 regions 
    49569 Ungrouped to 5 regions 
    49570 
    49571 > select subtract #2.15
    49572 
    49573 4 models selected 
    49574 
    49575 > select #2.9
    49576 
    49577 1 model selected 
    49578 
    49579 > select add #2.14
    49580 
    49581 2 models selected 
    49582 
    49583 > select subtract #2.14
    49584 
    49585 1 model selected 
    49586 
    49587 > select add #2.14
    49588 
    49589 2 models selected 
    49590 Grouped 2 regions 
    49591 
    49592 > select clear
    49593 
    49594 > select #2.15
    49595 
    49596 1 model selected 
    49597 
    49598 > select #2.15
    49599 
    49600 1 model selected 
    49601 Ungrouped to 0 regions 
    49602 
    49603 > select #2.4
    49604 
    49605 1 model selected 
    49606 
    49607 > select add #2.17
    49608 
    49609 2 models selected 
    49610 
    49611 > select add #2.11
    49612 
    49613 3 models selected 
    49614 
    49615 > select add #2.5
    49616 
    49617 4 models selected 
    49618 Grouped 4 regions 
    49619 Showing 152 region surfaces 
    49620 
    49621 > select clear
    49622 
    49623 > select #2.4
    49624 
    49625 1 model selected 
    49626 Ungrouped to 4 regions 
    49627 Ungrouped to 2 regions 
    49628 Ungrouped to 3 regions 
    49629 [Repeated 1 time(s)]Ungrouped to 8 regions 
    49630 Ungrouped to 56 regions 
    49631 Ungrouped to 47 regions 
    49632 Ungrouped to 0 regions 
    49633 
    49634 > select #2.21
    49635 
    49636 1 model selected 
    49637 
    49638 > select add #2.170
    49639 
    49640 2 models selected 
    49641 
    49642 > select add #2.171
    49643 
    49644 3 models selected 
    49645 
    49646 > select add #2.32
    49647 
    49648 4 models selected 
    49649 
    49650 > select add #2.8
    49651 
    49652 5 models selected 
    49653 
    49654 > select add #2.141
    49655 
    49656 6 models selected 
    49657 Grouped 6 regions 
    49658 
    49659 > select add #2.192
    49660 
    49661 2 models selected 
    49662 
    49663 > select add #2.35
    49664 
    49665 3 models selected 
    49666 
    49667 > select add #2.194
    49668 
    49669 4 models selected 
    49670 
    49671 > select add #2.185
    49672 
    49673 5 models selected 
    49674 Grouped 5 regions 
    49675 
    49676 > select add #2.196
    49677 
    49678 2 models selected 
    49679 Grouped 2 regions 
    49680 
    49681 > select add #2.161
    49682 
    49683 2 models selected 
    49684 
    49685 > select add #2.163
    49686 
    49687 3 models selected 
    49688 
    49689 > select add #2.174
    49690 
    49691 4 models selected 
    49692 
    49693 > select add #2.6
    49694 
    49695 5 models selected 
    49696 Grouped 5 regions 
    49697 
    49698 > select add #2.46
    49699 
    49700 2 models selected 
    49701 
    49702 > select add #2.28
    49703 
    49704 3 models selected 
    49705 Grouped 3 regions 
    49706 
    49707 > select add #2.168
    49708 
    49709 2 models selected 
    49710 
    49711 > select add #2.156
    49712 
    49713 3 models selected 
    49714 
    49715 > select add #2.149
    49716 
    49717 4 models selected 
    49718 Grouped 4 regions 
    49719 
    49720 > select add #2.167
    49721 
    49722 2 models selected 
    49723 
    49724 > select add #2.7
    49725 
    49726 3 models selected 
    49727 Grouped 3 regions 
    49728 
    49729 > select #2.176
    49730 
    49731 1 model selected 
    49732 
    49733 > select add #2.119
    49734 
    49735 2 models selected 
    49736 
    49737 > select add #2.118
    49738 
    49739 3 models selected 
    49740 
    49741 > select add #2.143
    49742 
    49743 4 models selected 
    49744 
    49745 > select add #2.144
    49746 
    49747 5 models selected 
    49748 
    49749 > select add #2.22
    49750 
    49751 6 models selected 
    49752 Grouped 6 regions 
    49753 
    49754 > select add #2.175
    49755 
    49756 2 models selected 
    49757 Grouped 2 regions 
    49758 
    49759 > select #2.10
    49760 
    49761 1 model selected 
    49762 Ungrouped to 2 regions 
    49763 [Repeated 1 time(s)]Ungrouped to 10 regions 
    49764 Ungrouped to 3 regions 
    49765 Ungrouped to 6 regions 
    49766 Ungrouped to 13 regions 
    49767 Ungrouped to 43 regions 
    49768 Ungrouped to 63 regions 
    49769 Ungrouped to 0 regions 
    49770 
    49771 > select #2.7
    49772 
    49773 1 model selected 
    49774 
    49775 > select add #2.43
    49776 
    49777 2 models selected 
    49778 Grouped 2 regions 
    49779 
    49780 > select add #2.141
    49781 
    49782 2 models selected 
    49783 Grouped 2 regions 
    49784 
    49785 > select add #2.45
    49786 
    49787 2 models selected 
    49788 
    49789 > select add #2.157
    49790 
    49791 3 models selected 
    49792 Grouped 3 regions 
    49793 
    49794 > select add #2.6
    49795 
    49796 2 models selected 
    49797 Grouped 2 regions 
    49798 
    49799 > select #2.12
    49800 
    49801 1 model selected 
    49802 
    49803 > select add #2.19
    49804 
    49805 2 models selected 
    49806 
    49807 > select add #2.120
    49808 
    49809 3 models selected 
    49810 
    49811 > select add #2.123
    49812 
    49813 4 models selected 
    49814 
    49815 > select add #2.151
    49816 
    49817 5 models selected 
    49818 
    49819 > select add #2.153
    49820 
    49821 6 models selected 
    49822 
    49823 > select add #2.154
    49824 
    49825 7 models selected 
    49826 
    49827 > select subtract #2.154
    49828 
    49829 6 models selected 
    49830 Grouped 6 regions 
    49831 
    49832 > select add #2.152
    49833 
    49834 2 models selected 
    49835 Grouped 2 regions 
    49836 
    49837 > select add #2.49
    49838 
    49839 2 models selected 
    49840 Grouped 2 regions 
    49841 
    49842 > select add #2.6
    49843 
    49844 2 models selected 
    49845 Grouped 2 regions 
    49846 
    49847 > select add #2.102
    49848 
    49849 2 models selected 
    49850 
    49851 > select add #2.100
    49852 
    49853 3 models selected 
    49854 
    49855 > select add #2.101
    49856 
    49857 4 models selected 
    49858 
    49859 > select add #2.103
    49860 
    49861 5 models selected 
    49862 
    49863 > select add #2.63
    49864 
    49865 6 models selected 
    49866 
    49867 > select add #2.98
    49868 
    49869 7 models selected 
    49870 
    49871 > select subtract #2.98
    49872 
    49873 6 models selected 
    49874 
    49875 > select add #2.81
    49876 
    49877 7 models selected 
    49878 
    49879 > select add #2.80
    49880 
    49881 8 models selected 
    49882 
    49883 > select add #2.54
    49884 
    49885 9 models selected 
    49886 
    49887 > select add #2.71
    49888 
    49889 10 models selected 
    49890 
    49891 > select add #2.68
    49892 
    49893 11 models selected 
    49894 
    49895 > select add #2.93
    49896 
    49897 12 models selected 
    49898 
    49899 > select add #2.92
    49900 
    49901 13 models selected 
    49902 
    49903 > select add #2.82
    49904 
    49905 14 models selected 
    49906 
    49907 > select add #2.26
    49908 
    49909 15 models selected 
    49910 
    49911 > select add #2.18
    49912 
    49913 16 models selected 
    49914 
    49915 > select add #2.83
    49916 
    49917 17 models selected 
    49918 
    49919 > select add #2.99
    49920 
    49921 18 models selected 
    49922 
    49923 > select add #2.98
    49924 
    49925 19 models selected 
    49926 
    49927 > select add #2.97
    49928 
    49929 20 models selected 
    49930 
    49931 > select add #2.13
    49932 
    49933 21 models selected 
    49934 
    49935 > select add #2.36
    49936 
    49937 22 models selected 
    49938 
    49939 > select add #2.62
    49940 
    49941 23 models selected 
    49942 
    49943 > select add #2.66
    49944 
    49945 24 models selected 
    49946 
    49947 > select add #2.42
    49948 
    49949 25 models selected 
    49950 
    49951 > select add #2.33
    49952 
    49953 26 models selected 
    49954 Grouped 26 regions 
    49955 
    49956 > select add #2.169
    49957 
    49958 2 models selected 
    49959 
    49960 > select add #2.72
    49961 
    49962 3 models selected 
    49963 
    49964 > select add #2.2
    49965 
    49966 4 models selected 
    49967 
    49968 > select add #2.73
    49969 
    49970 5 models selected 
    49971 
    49972 > select add #2.104
    49973 
    49974 6 models selected 
    49975 
    49976 > select add #2.95
    49977 
    49978 7 models selected 
    49979 
    49980 > select add #2.88
    49981 
    49982 8 models selected 
    49983 
    49984 > select add #2.89
    49985 
    49986 9 models selected 
    49987 
    49988 > select add #2.85
    49989 
    49990 10 models selected 
    49991 
    49992 > select add #2.139
    49993 
    49994 11 models selected 
    49995 
    49996 > select add #2.122
    49997 
    49998 12 models selected 
    49999 
    50000 > select add #2.121
    50001 
    50002 13 models selected 
    50003 
    50004 > select add #2.137
    50005 
    50006 14 models selected 
    50007 
    50008 > select add #2.113
    50009 
    50010 15 models selected 
    50011 
    50012 > select add #2.111
    50013 
    50014 16 models selected 
    50015 
    50016 > select add #2.140
    50017 
    50018 17 models selected 
    50019 
    50020 > select add #2.138
    50021 
    50022 18 models selected 
    50023 
    50024 > select add #2.108
    50025 
    50026 19 models selected 
    50027 
    50028 > select add #2.112
    50029 
    50030 20 models selected 
    50031 
    50032 > select add #2.135
    50033 
    50034 21 models selected 
    50035 
    50036 > select subtract #2.135
    50037 
    50038 20 models selected 
    50039 
    50040 > select add #2.134
    50041 
    50042 21 models selected 
    50043 
    50044 > select add #2.135
    50045 
    50046 22 models selected 
    50047 
    50048 > select add #2.77
    50049 
    50050 23 models selected 
    50051 
    50052 > select add #2.15
    50053 
    50054 24 models selected 
    50055 
    50056 > select add #2.136
    50057 
    50058 25 models selected 
    50059 
    50060 > select add #2.105
    50061 
    50062 26 models selected 
    50063 
    50064 > select add #2.107
    50065 
    50066 27 models selected 
    50067 
    50068 > select add #2.86
    50069 
    50070 28 models selected 
    50071 
    50072 > select add #2.78
    50073 
    50074 29 models selected 
    50075 
    50076 > select add #2.94
    50077 
    50078 30 models selected 
    50079 
    50080 > select add #2.130
    50081 
    50082 31 models selected 
    50083 Grouped 31 regions 
    50084 
    50085 > select #2.142
    50086 
    50087 1 model selected 
    50088 
    50089 > select add #2.2
    50090 
    50091 2 models selected 
    50092 Grouped 2 regions 
    50093 
    50094 > select #2.2
    50095 
    50096 1 model selected 
    50097 
    50098 > select add #2.51
    50099 
    50100 2 models selected 
    50101 
    50102 > select add #2.58
    50103 
    50104 3 models selected 
    50105 
    50106 > select add #2.57
    50107 
    50108 4 models selected 
    50109 
    50110 > select add #2.59
    50111 
    50112 5 models selected 
    50113 
    50114 > select add #2.55
    50115 
    50116 6 models selected 
    50117 Grouped 6 regions 
    50118 
    50119 > select add #2.56
    50120 
    50121 2 models selected 
    50122 Grouped 2 regions 
    50123 
    50124 > select add #2.173
    50125 
    50126 2 models selected 
    50127 
    50128 > select add #2.40
    50129 
    50130 3 models selected 
    50131 
    50132 > select #2.2
    50133 
    50134 1 model selected 
    50135 
    50136 > select clear
    50137 
    50138 > select #2.2
    50139 
    50140 1 model selected 
    50141 
    50142 > select add #2.173
    50143 
    50144 2 models selected 
    50145 
    50146 > select add #2.165
    50147 
    50148 3 models selected 
    50149 Grouped 3 regions 
    50150 
    50151 > select clear
    50152 
    50153 > select #2.2
    50154 
    50155 1 model selected 
    50156 Opened PflABCD_Cage_imasked_imasked_imasked_imasked_imasked as #30, grid size
    50157 200,200,200, pixel 2.14, shown at step 1, values float32 
    50158 
    50159 The cached device pixel ratio value was stale on window expose. Please file a
    50160 QTBUG which explains how to reproduce. 
    50161 
    50162 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Cage-PflAB.mrc models #30
    50163 
    50164 > hide #!2 models
    50165 
    50166 > hide #!30 models
    50167 
    50168 > show #!30 models
    50169 
    50170 > show #!26 models
    50171 
    50172 > show #!22 models
    50173 
    50174 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Resegmentation_no-mask.cxs
    50175 > includeMaps true
    50176 
    50177 > close session
    50178 
    50179 > open /Users/shoichitachiyama/Desktop/tmp/REDO/PflCD.mrc
    50180 
    50181 Opened PflCD.mrc as #1, grid size 200,200,200, pixel 2.14, shown at level
    50182 0.00703, step 1, values float32 
    50183 
    50184 > open /Users/shoichitachiyama/Desktop/tmp/REDO/Cage-PflAB.mrc
    50185 
    50186 Opened Cage-PflAB.mrc as #2, grid size 200,200,200, pixel 2.14, shown at level
    50187 0.0202, step 1, values float32 
    50188 
    50189 > volume #2 level 0.00703
    50190 
    50191 > volume gaussian #1 sDev 2.5
    50192 
    50193 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    50194 step 1, values float32 
    50195 
    50196 > close #3
    50197 
    50198 > volume gaussian #1 sDev 3
    50199 
    50200 Opened PflCD.mrc gaussian as #3, grid size 200,200,200, pixel 2.14, shown at
    50201 step 1, values float32 
    50202 
    50203 > volume gaussian #2 sDev 3
    50204 
    50205 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    50206 at step 1, values float32 
    50207 
    50208 > volume #3 level 0.00703
    50209 
    50210 > volume #3 level 0.0025
    50211 
    50212 > volume #3 level 0.00136
    50213 
    50214 > volume #4 level 0.00136
    50215 
    50216 > surface dust #3 size 21.4
    50217 
    50218 > surface dust #4 size 21.4
    50219 
    50220 > surface dust #3 size 21.4
    50221 
    50222 > surface dust #4 size 21.4
    50223 
    50224 > hide #!4 models
    50225 
    50226 > ui tool show "Map Eraser"
    50227 
    50228 > volume erase #3 center 20.174,224.54,492.02 radius 236.77
    50229 
    50230 > volume erase #3 center 65.467,171.46,92.433 radius 236.77
    50231 
    50232 > volume erase #3 center 77.209,339.85,3.3018 radius 236.77
    50233 
    50234 > volume erase #3 center 401.68,295.76,-1.6159 radius 236.77
    50235 
    50236 > volume erase #3 center 407.21,44.159,53.128 radius 236.77
    50237 
    50238 > volume erase #3 center 469.71,44.506,126.55 radius 236.77
    50239 
    50240 > volume erase #3 center 515.86,325.83,152.59 radius 236.77
    50241 
    50242 > volume erase #3 center 304.43,421.76,5.3757 radius 236.77
    50243 
    50244 > volume erase #3 center 23.092,-59.062,487.37 radius 236.77
    50245 
    50246 > volume erase #3 center 22.49,472.98,554.6 radius 236.77
    50247 
    50248 > volume erase #3 center 360.47,-87.815,101.02 radius 236.77
    50249 
    50250 > hide #!3 models
    50251 
    50252 > show #!4 models
    50253 
    50254 > volume erase #4 center 82.975,209.79,483.49 radius 214
    50255 
    50256 > volume erase #4 center 36.493,188.42,56.438 radius 214
    50257 
    50258 > volume erase #4 center 64.371,426.19,72.091 radius 214
    50259 
    50260 > volume erase #4 center 544.73,447.17,222.02 radius 214
    50261 
    50262 > volume erase #4 center 587.15,237.1,237.72 radius 214
    50263 
    50264 > volume erase #4 center 538.34,-6.7222,246.41 radius 214
    50265 
    50266 > volume erase #4 center 595.68,4.2899,35.265 radius 214
    50267 
    50268 > volume erase #4 center -32.899,40.612,279.33 radius 214
    50269 
    50270 [Repeated 1 time(s)]
    50271 
    50272 > volume erase #4 center 11.837,480.63,487.85 radius 214
    50273 
    50274 > volume erase #4 center 287.58,47.244,-158.46 radius 214
    50275 
    50276 > surface dust #1 size 50
    50277 
    50278 > surface dust #4 size 50
    50279 
    50280 > volume erase #4 center 517.5,482.91,67.451 radius 214
    50281 
    50282 > close #4
    50283 
    50284 > volume gaussian #2 sDev 3
    50285 
    50286 Opened Cage-PflAB.mrc gaussian as #4, grid size 200,200,200, pixel 2.14, shown
    50287 at step 1, values float32 
    50288 
    50289 > volume #4 level 0.001306
    50290 
    50291 > surface dust #4 size 50
    50292 
    50293 > surface dust #4 size 100
    50294 
    50295 > volume erase #4 center 558.64,398.88,78.048 radius 214
    50296 
    50297 > volume erase #4 center -21.244,220.82,150.15 radius 214
    50298 
    50299 > close #5
    50300 
    50301 > show #!3 models
    50302 
    50303 > surface dust #3 size 100
    50304 
    50305 > color #4 #a9a9a967 models
    50306 
    50307 > color #4 #7b80ffff models
    50308 
    50309 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Docking_models.cxs includeMaps
    50310 > true
    50311 
    50312 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    50313 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    50314 > refinment/For-PflCD/Cage-PflCD.pdb"
    50315 
    50316 Chain information for Cage-PflCD.pdb 
    50317 --- 
    50318 Chain | Description 
    50319 5.1/A 5.4/D 5.7/G 5.10/J 5.13/M 5.16/P 5.19/S 5.22/V | No description available 
    50320 5.2/B 5.5/E 5.8/H 5.11/K 5.14/N 5.17/Q 5.20/T 5.23/W | No description available 
    50321 5.3/C 5.6/F 5.9/I 5.12/L 5.15/O 5.18/R 5.21/U 5.24/X | No description available 
    50322 5.25/Y 5.26/a 5.27/b 5.28/c | No description available 
    50323  
    50324 
    50325 > color #4 #a9a9a967 models
    50326 
    50327 > color #3 #a9a9a967 models
    50328 
    50329 > combine #5
    50330 
    50331 > ui tool show "Fit in Map"
    50332 
    50333 The cached device pixel ratio value was stale on window expose. Please file a
    50334 QTBUG which explains how to reproduce. 
    50335 
    50336 [Repeated 1 time(s)]
    50337 
    50338 > fitmap #6 inMap #4
    50339 
    50340 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    50341 atoms 
    50342 average map value = 0.01011, steps = 84 
    50343 shifted from previous position = 5.88 
    50344 rotated from previous position = 2.53 degrees 
    50345 atoms outside contour = 30040, contour level = 0.0013059 
    50346  
    50347 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    50348 coordinates: 
    50349 Matrix rotation and translation 
    50350 0.99921948 0.02312516 -0.03202601 0.55153051 
    50351 -0.02374963 0.99953244 -0.01925771 7.88332673 
    50352 0.03156570 0.02000328 0.99930149 -14.43575364 
    50353 Axis 0.44504051 -0.72083986 -0.53134625 
    50354 Axis point 419.20046007 0.00000000 -24.02856866 
    50355 Rotation angle (degrees) 2.52810607 
    50356 Shift along axis 2.23322092 
    50357  
    50358 
    50359 > hide #!5 models
    50360 
    50361 > fitmap #6 inMap #4
    50362 
    50363 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    50364 atoms 
    50365 average map value = 0.01012, steps = 40 
    50366 shifted from previous position = 0.0416 
    50367 rotated from previous position = 0.00353 degrees 
    50368 atoms outside contour = 30045, contour level = 0.0013059 
    50369  
    50370 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    50371 coordinates: 
    50372 Matrix rotation and translation 
    50373 0.99922138 0.02306617 -0.03200918 0.53302975 
    50374 -0.02369055 0.99953368 -0.01926582 7.83564101 
    50375 0.03154986 0.02000913 0.99930188 -14.42339574 
    50376 Axis 0.44560291 -0.72112366 -0.53048912 
    50377 Axis point 418.97638152 0.00000000 -24.70165846 
    50378 Rotation angle (degrees) 2.52581118 
    50379 Shift along axis 2.23850797 
    50380  
    50381 
    50382 > fitmap #6 inMap #4
    50383 
    50384 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    50385 atoms 
    50386 average map value = 0.01011, steps = 40 
    50387 shifted from previous position = 0.0322 
    50388 rotated from previous position = 0.00166 degrees 
    50389 atoms outside contour = 30040, contour level = 0.0013059 
    50390  
    50391 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    50392 coordinates: 
    50393 Matrix rotation and translation 
    50394 0.99922152 0.02306628 -0.03200470 0.56113759 
    50395 -0.02368967 0.99953425 -0.01923730 7.84052675 
    50396 0.03154606 0.01998050 0.99930257 -14.42259568 
    50397 Axis 0.44511533 -0.72129020 -0.53067202 
    50398 Axis point 418.84422299 0.00000000 -23.92172561 
    50399 Rotation angle (degrees) 2.52489847 
    50400 Shift along axis 2.24814390 
    50401  
    50402 
    50403 > fitmap #6 inMap #4
    50404 
    50405 Fit molecule combination (#6) to map Cage-PflAB.mrc gaussian (#4) using 46256
    50406 atoms 
    50407 average map value = 0.01012, steps = 44 
    50408 shifted from previous position = 0.0365 
    50409 rotated from previous position = 0.00837 degrees 
    50410 atoms outside contour = 30042, contour level = 0.0013059 
    50411  
    50412 Position of combination (#6) relative to Cage-PflAB.mrc gaussian (#4)
    50413 coordinates: 
    50414 Matrix rotation and translation 
    50415 0.99921675 0.02316253 -0.03208400 0.53098251 
    50416 -0.02378984 0.99953047 -0.01931011 7.87882954 
    50417 0.03162166 0.02005826 0.99929862 -14.45380155 
    50418 Axis 0.44539356 -0.72073324 -0.53119504 
    50419 Axis point 418.98009767 0.00000000 -24.71549644 
    50420 Rotation angle (degrees) 2.53301404 
    50421 Shift along axis 2.23574951 
    50422  
    50423 
    50424 > hide #6 models
    50425 
    50426 > show #6 models
    50427 
    50428 > hide #6 models
    50429 
    50430 > show #!5 models
    50431 
    50432 > hide #5.3 models
    50433 
    50434 > show #5.3 models
    50435 
    50436 > hide #5.28 models
    50437 
    50438 > show #5.28 models
    50439 
    50440 > hide #!5 models
    50441 
    50442 > show #6 models
    50443 
    50444 > open
    50445 > /Users/shoichitachiyama/Desktop/tmp/REDO/fold_2025_07_22_09_45cj_pilmno/fold_2025_07_22_09_45cj_pilmno_model_0.cif
    50446 
    50447 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif #7 
    50448 --- 
    50449 Chain | Description 
    50450 A | . 
    50451 B | . 
    50452 C | . 
    50453  
    50454 
    50455 > select add #7
    50456 
    50457 5637 atoms, 5737 bonds, 683 residues, 1 model selected 
    50458 
    50459 > ui mousemode right "translate selected models"
    50460 
    50461 > view matrix models #7,1,0,0,8.8892,0,1,0,-12.538,0,0,1,224.08
    50462 
    50463 > view matrix models #7,1,0,0,345.54,0,1,0,65.693,0,0,1,212.5
    50464 
    50465 > ui mousemode right "rotate selected models"
    50466 
    50467 > view matrix models
    50468 > #7,-0.84784,0.14233,0.51079,340.7,-0.46043,-0.6754,-0.57606,46.043,0.263,-0.72358,0.63817,205.61
    50469 
    50470 > ui mousemode right "translate selected models"
    50471 
    50472 > view matrix models
    50473 > #7,-0.84784,0.14233,0.51079,351.79,-0.46043,-0.6754,-0.57606,161.29,0.263,-0.72358,0.63817,160.26
    50474 
    50475 > view matrix models
    50476 > #7,-0.84784,0.14233,0.51079,347.8,-0.46043,-0.6754,-0.57606,163.57,0.263,-0.72358,0.63817,160.49
    50477 
    50478 > ui mousemode right "rotate selected models"
    50479 
    50480 > view matrix models
    50481 > #7,-0.77936,-0.051184,0.62449,346.55,-0.49138,-0.56848,-0.65983,164.23,0.38878,-0.8211,0.4179,159.45
    50482 
    50483 > ui mousemode right "translate selected models"
    50484 
    50485 > view matrix models
    50486 > #7,-0.77936,-0.051184,0.62449,327.63,-0.49138,-0.56848,-0.65983,175.12,0.38878,-0.8211,0.4179,155.63
    50487 
    50488 > view matrix models
    50489 > #7,-0.77936,-0.051184,0.62449,327.88,-0.49138,-0.56848,-0.65983,173.06,0.38878,-0.8211,0.4179,150.22
    50490 
    50491 > view matrix models
    50492 > #7,-0.77936,-0.051184,0.62449,334.14,-0.49138,-0.56848,-0.65983,174.64,0.38878,-0.8211,0.4179,151.85
    50493 
    50494 > view matrix models
    50495 > #7,-0.77936,-0.051184,0.62449,333.76,-0.49138,-0.56848,-0.65983,196.03,0.38878,-0.8211,0.4179,132.67
    50496 
    50497 > view matrix models
    50498 > #7,-0.77936,-0.051184,0.62449,326.38,-0.49138,-0.56848,-0.65983,101.33,0.38878,-0.8211,0.4179,154.88
    50499 
    50500 > ui mousemode right "rotate selected models"
    50501 
    50502 > view matrix models
    50503 > #7,-0.77421,-0.05604,0.63044,326.37,-0.45181,-0.64862,-0.6125,100.86,0.44324,-0.75904,0.47685,155.87
    50504 
    50505 > ui mousemode right "translate selected models"
    50506 
    50507 > view matrix models
    50508 > #7,-0.77421,-0.05604,0.63044,325.89,-0.45181,-0.64862,-0.6125,94.416,0.44324,-0.75904,0.47685,158.06
    50509 
    50510 > ui mousemode right "rotate selected models"
    50511 
    50512 > view matrix models
    50513 > #7,-0.84318,-0.13151,0.5213,324.57,-0.32745,-0.64341,-0.69195,94.756,0.4264,-0.75414,0.49945,158.1
    50514 
    50515 > hide #7 models
    50516 
    50517 > select subtract #7
    50518 
    50519 Nothing selected 
    50520 
    50521 > show #7 models
    50522 
    50523 > select add #7
    50524 
    50525 5637 atoms, 5737 bonds, 683 residues, 1 model selected 
    50526 
    50527 > view matrix models
    50528 > #7,-0.85479,-0.11718,0.50557,324.61,-0.41822,-0.42128,-0.80475,96.198,0.30729,-0.89933,0.3111,155.68
    50529 
    50530 > ui mousemode right "translate selected models"
    50531 
    50532 > view matrix models
    50533 > #7,-0.85479,-0.11718,0.50557,326.23,-0.41822,-0.42128,-0.80475,116.83,0.30729,-0.89933,0.3111,151.17
    50534 
    50535 > save /Users/shoichitachiyama/Desktop/tmp/REDO/Docking_models.cxs includeMaps
    50536 > true
    50537 
    50538 ——— End of log from Tue Jul 22 22:37:33 2025 ———
    50539 
    50540 opened ChimeraX session 
    50541 
    50542 > hide #!3 models
    50543 
    50544 > hide #!4 models
    50545 
    50546 > hide #5.2 models
    50547 
    50548 > show #5.2 models
    50549 
    50550 > hide #6 models
    50551 
    50552 > hide #5.1 models
    50553 
    50554 > show #5.1 models
    50555 
    50556 > hide #5.3 models
    50557 
    50558 > show #5.3 models
    50559 
    50560 > hide #5.4 models
    50561 
    50562 > show #5.4 models
    50563 
    50564 > hide #5.5 models
    50565 
    50566 > show #5.5 models
    50567 
    50568 > hide #5.28 models
    50569 
    50570 > show #5.28 models
    50571 
    50572 > hide #5.27 models
    50573 
    50574 > show #5.27 models
    50575 
    50576 > hide #5.25 models
    50577 
    50578 > show #5.25 models
    50579 
    50580 > hide #5.24 models
    50581 
    50582 > show #5.24 models
    50583 
    50584 > hide #5.23 models
    50585 
    50586 > show #5.23 models
    50587 
    50588 > hide #5.23 models
    50589 
    50590 > show #5.23 models
    50591 
    50592 > hide #5.24 models
    50593 
    50594 > show #5.24 models
    50595 
    50596 > hide #5.24 models
    50597 
    50598 > hide #5.25 models
    50599 
    50600 > hide #5.23 models
    50601 
    50602 > show #5.23 models
    50603 
    50604 > hide #5.23 models
    50605 
    50606 > show #5.23 models
    50607 
    50608 > select add #5.23
    50609 
    50610 7095 atoms, 7225 bonds, 858 residues, 2 models selected 
    50611 Alignment identifier is 1 
    50612 Alignment identifier is 7/A 
    50613 Alignment identifier is 7/C 
    50614 
    50615 > select subtract #7
    50616 
    50617 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    50618 
    50619 > select add #7
    50620 
    50621 7095 atoms, 7225 bonds, 858 residues, 2 models selected 
    50622 Alignment identifier is 2 
    50623 Alignment identifier is 7/A 
    50624 Alignment identifier is 7/C 
    50625 
    50626 > select #7/A:1-2
    50627 
    50628 16 atoms, 15 bonds, 2 residues, 1 model selected 
    50629 
    50630 > select #7/A
    50631 
    50632 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    50633 
    50634 > select #7/C:1-2
    50635 
    50636 12 atoms, 11 bonds, 2 residues, 1 model selected 
    50637 
    50638 > select #7/C
    50639 
    50640 1542 atoms, 1563 bonds, 189 residues, 1 model selected 
    50641 
    50642 > split #7
    50643 
    50644 Split fold_2025_07_22_09_45cj_pilmno_model_0.cif (#7) into 3 models 
    50645 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif A #7.1 
    50646 --- 
    50647 Chain | Description 
    50648 A | No description available 
    50649  
    50650 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif B #7.2 
    50651 --- 
    50652 Chain | Description 
    50653 B | No description available 
    50654  
    50655 Chain information for fold_2025_07_22_09_45cj_pilmno_model_0.cif C #7.3 
    50656 --- 
    50657 Chain | Description 
    50658 C | No description available 
    50659  
    50660 
    50661 > hide #7.1 models
    50662 
    50663 > combine #7.2,7.3
    50664 
    50665 No structures specified 
    50666 
    50667 > select add #7.2
    50668 
    50669 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    50670 
    50671 > select add #7.3
    50672 
    50673 3000 atoms, 3051 bonds, 364 residues, 2 models selected 
    50674 
    50675 > save /Users/shoichi/Desktop/PilNO_noPilM_predicted.pdb selectedOnly true
    50676 
    50677 > select clear
    50678 
    50679 > open /Users/shoichi/Desktop/PilNO_noPilM_predicted.pdb
    50680 
    50681 Summary of feedback from opening
    50682 /Users/shoichi/Desktop/PilNO_noPilM_predicted.pdb 
    50683 --- 
    50684 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    50685 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    50686 42 
    50687 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    50688 8 
    50689 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    50690 1 7 
    50691 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    50692 1 3 
    50693 21 messages similar to the above omitted 
    50694  
    50695 Chain information for PilNO_noPilM_predicted.pdb 
    50696 --- 
    50697 Chain | Description 
    50698 8.1/B | No description available 
    50699 8.2/C | No description available 
    50700  
    50701 
    50702 > combine #8
    50703 
    50704 > hide #!8 models
    50705 
    50706 > show #6 models
    50707 
    50708 > hide #6 models
    50709 
    50710 > show #6 models
    50711 
    50712 > show #!4 models
    50713 
    50714 > hide #6 models
    50715 
    50716 > show #6 models
    50717 
    50718 > hide #6 models
    50719 
    50720 > show #6 models
    50721 
    50722 > hide #6 models
    50723 
    50724 > show #6 models
    50725 
    50726 > hide #!5 models
    50727 
    50728 > split #6
    50729 
    50730 Split combination (#6) into 28 models 
    50731 Chain information for combination A #6.1 
    50732 --- 
    50733 Chain | Description 
    50734 A | No description available 
    50735  
    50736 Chain information for combination B #6.2 
    50737 --- 
    50738 Chain | Description 
    50739 B | No description available 
    50740  
    50741 Chain information for combination C #6.3 
    50742 --- 
    50743 Chain | Description 
    50744 C | No description available 
    50745  
    50746 Chain information for combination D #6.4 
    50747 --- 
    50748 Chain | Description 
    50749 D | No description available 
    50750  
    50751 Chain information for combination E #6.5 
    50752 --- 
    50753 Chain | Description 
    50754 E | No description available 
    50755  
    50756 Chain information for combination F #6.6 
    50757 --- 
    50758 Chain | Description 
    50759 F | No description available 
    50760  
    50761 Chain information for combination G #6.7 
    50762 --- 
    50763 Chain | Description 
    50764 G | No description available 
    50765  
    50766 Chain information for combination H #6.8 
    50767 --- 
    50768 Chain | Description 
    50769 H | No description available 
    50770  
    50771 Chain information for combination I #6.9 
    50772 --- 
    50773 Chain | Description 
    50774 I | No description available 
    50775  
    50776 Chain information for combination J #6.10 
    50777 --- 
    50778 Chain | Description 
    50779 J | No description available 
    50780  
    50781 Chain information for combination K #6.11 
    50782 --- 
    50783 Chain | Description 
    50784 K | No description available 
    50785  
    50786 Chain information for combination L #6.12 
    50787 --- 
    50788 Chain | Description 
    50789 L | No description available 
    50790  
    50791 Chain information for combination M #6.13 
    50792 --- 
    50793 Chain | Description 
    50794 M | No description available 
    50795  
    50796 Chain information for combination N #6.14 
    50797 --- 
    50798 Chain | Description 
    50799 N | No description available 
    50800  
    50801 Chain information for combination O #6.15 
    50802 --- 
    50803 Chain | Description 
    50804 O | No description available 
    50805  
    50806 Chain information for combination P #6.16 
    50807 --- 
    50808 Chain | Description 
    50809 P | No description available 
    50810  
    50811 Chain information for combination Q #6.17 
    50812 --- 
    50813 Chain | Description 
    50814 Q | No description available 
    50815  
    50816 Chain information for combination R #6.18 
    50817 --- 
    50818 Chain | Description 
    50819 R | No description available 
    50820  
    50821 Chain information for combination S #6.19 
    50822 --- 
    50823 Chain | Description 
    50824 S | No description available 
    50825  
    50826 Chain information for combination T #6.20 
    50827 --- 
    50828 Chain | Description 
    50829 T | No description available 
    50830  
    50831 Chain information for combination U #6.21 
    50832 --- 
    50833 Chain | Description 
    50834 U | No description available 
    50835  
    50836 Chain information for combination V #6.22 
    50837 --- 
    50838 Chain | Description 
    50839 V | No description available 
    50840  
    50841 Chain information for combination W #6.23 
    50842 --- 
    50843 Chain | Description 
    50844 W | No description available 
    50845  
    50846 Chain information for combination X #6.24 
    50847 --- 
    50848 Chain | Description 
    50849 X | No description available 
    50850  
    50851 Chain information for combination Y #6.25 
    50852 --- 
    50853 Chain | Description 
    50854 Y | No description available 
    50855  
    50856 Chain information for combination a #6.26 
    50857 --- 
    50858 Chain | Description 
    50859 a | No description available 
    50860  
    50861 Chain information for combination b #6.27 
    50862 --- 
    50863 Chain | Description 
    50864 b | No description available 
    50865  
    50866 Chain information for combination c #6.28 
    50867 --- 
    50868 Chain | Description 
    50869 c | No description available 
    50870  
    50871 
    50872 > hide #!4 models
    50873 
    50874 > show #!4 models
    50875 
    50876 > hide #!6 models
    50877 
    50878 > hide #!7 models
    50879 
    50880 > show #!6 models
    50881 
    50882 > select add #6.8
    50883 
    50884 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    50885 
    50886 > select subtract #6.8
    50887 
    50888 Nothing selected 
    50889 
    50890 > hide #!4 models
    50891 
    50892 Drag select of 33 residues 
    50893 
    50894 > select add #6.10
    50895 
    50896 1713 atoms, 1564 bonds, 211 residues, 3 models selected 
    50897 
    50898 > select add #6.11
    50899 
    50900 3083 atoms, 3052 bonds, 375 residues, 3 models selected 
    50901 
    50902 > select add #6.12
    50903 
    50904 4355 atoms, 4440 bonds, 526 residues, 3 models selected 
    50905 
    50906 > save /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflD.pdb selectedOnly true
    50907 
    50908 > hide #!6 models
    50909 
    50910 > select clear
    50911 
    50912 > open /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflD.pdb
    50913 
    50914 Summary of feedback from opening
    50915 /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflD.pdb 
    50916 --- 
    50917 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    50918 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    50919 42 
    50920 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    50921 8 
    50922 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    50923 1 7 
    50924 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    50925 1 3 
    50926 34 messages similar to the above omitted 
    50927  
    50928 Chain information for One_unit_JBM_PilNO_PflD.pdb 
    50929 --- 
    50930 Chain | Description 
    50931 10.1/J | No description available 
    50932 10.2/K | No description available 
    50933 10.3/L | No description available 
    50934  
    50935 
    50936 > combine #10
    50937 
    50938 > matchmaker #9 to #11
    50939 
    50940 Parameters 
    50941 --- 
    50942 Chain pairing | bb 
    50943 Alignment algorithm | Needleman-Wunsch 
    50944 Similarity matrix | BLOSUM-62 
    50945 SS fraction | 0.3 
    50946 Gap open (HH/SS/other) | 18/18/6 
    50947 Gap extend | 1 
    50948 SS matrix |  |  | H | S | O 
    50949 ---|---|---|--- 
    50950 H | 6 | -9 | -6 
    50951 S |  | 6 | -6 
    50952 O |  |  | 4 
    50953 Iteration cutoff | 2 
    50954  
    50955 Matchmaker combination, chain J (#11) with combination, chain C (#9), sequence
    50956 alignment score = 960 
    50957 RMSD between 153 pruned atom pairs is 0.777 angstroms; (across all 189 pairs:
    50958 12.653) 
    50959  
    50960 
    50961 > show #!7 models
    50962 
    50963 > hide #!7 models
    50964 
    50965 > show #!7 models
    50966 
    50967 > show #7.1 models
    50968 
    50969 > combine #7
    50970 
    50971 > matchmaker #12 to #9
    50972 
    50973 Parameters 
    50974 --- 
    50975 Chain pairing | bb 
    50976 Alignment algorithm | Needleman-Wunsch 
    50977 Similarity matrix | BLOSUM-62 
    50978 SS fraction | 0.3 
    50979 Gap open (HH/SS/other) | 18/18/6 
    50980 Gap extend | 1 
    50981 SS matrix |  |  | H | S | O 
    50982 ---|---|---|--- 
    50983 H | 6 | -9 | -6 
    50984 S |  | 6 | -6 
    50985 O |  |  | 4 
    50986 Iteration cutoff | 2 
    50987  
    50988 Matchmaker combination, chain C (#9) with combination, chain C (#12), sequence
    50989 alignment score = 978 
    50990 RMSD between 189 pruned atom pairs is 0.000 angstroms; (across all 189 pairs:
    50991 0.000) 
    50992  
    50993 
    50994 > hide #11 models
    50995 
    50996 > show #11 models
    50997 
    50998 > hide #11 models
    50999 
    51000 > hide #!10 models
    51001 
    51002 > hide #9 models
    51003 
    51004 > hide #!7 models
    51005 
    51006 > show #!5 models
    51007 
    51008 > hide #!5 models
    51009 
    51010 > show #!4 models
    51011 
    51012 > combine #12
    51013 
    51014 > ui tool show "Fit in Map"
    51015 
    51016 The cached device pixel ratio value was stale on window expose. Please file a
    51017 QTBUG which explains how to reproduce. 
    51018 
    51019 [Repeated 1 time(s)]
    51020 
    51021 > fitmap #13 inMap #4
    51022 
    51023 Fit molecule copy of combination (#13) to map Cage-PflAB.mrc gaussian (#4)
    51024 using 5637 atoms 
    51025 average map value = 0.01109, steps = 636 
    51026 shifted from previous position = 24.6 
    51027 rotated from previous position = 33.3 degrees 
    51028 atoms outside contour = 1405, contour level = 0.0013059 
    51029  
    51030 Position of copy of combination (#13) relative to Cage-PflAB.mrc gaussian (#4)
    51031 coordinates: 
    51032 Matrix rotation and translation 
    51033 -0.88826804 -0.00944555 0.45922835 323.13195928 
    51034 -0.40374456 -0.46067511 -0.79042316 119.91203454 
    51035 0.21902105 -0.88751857 0.40538939 156.26725860 
    51036 Axis -0.20579620 0.50912545 -0.83572675 
    51037 Axis point 155.86657636 86.42998297 0.00000000 
    51038 Rotation angle (degrees) 166.35520893 
    51039 Shift along axis -136.04578879 
    51040  
    51041 
    51042 > hide #12 models
    51043 
    51044 > show #12 models
    51045 
    51046 > hide #12 models
    51047 
    51048 > select add #13
    51049 
    51050 5637 atoms, 5737 bonds, 683 residues, 1 model selected 
    51051 
    51052 > ui mousemode right "rotate selected models"
    51053 
    51054 > view matrix models
    51055 > #13,-0.50943,0.1189,0.85226,316.16,-0.78994,-0.45743,-0.40836,97.933,0.3413,-0.88126,0.32695,158.84
    51056 
    51057 > ui mousemode right "translate selected models"
    51058 
    51059 > view matrix models
    51060 > #13,-0.50943,0.1189,0.85226,317.58,-0.78994,-0.45743,-0.40836,114.97,0.3413,-0.88126,0.32695,156.12
    51061 
    51062 > ui mousemode right "rotate selected models"
    51063 
    51064 > view matrix models
    51065 > #13,-0.50657,0.12206,0.85352,317.62,-0.80047,-0.43441,-0.41296,115.14,0.32037,-0.89241,0.31776,155.9
    51066 
    51067 > ui mousemode right "translate selected models"
    51068 
    51069 > view matrix models
    51070 > #13,-0.50657,0.12206,0.85352,317.73,-0.80047,-0.43441,-0.41296,116.34,0.32037,-0.89241,0.31776,155.65
    51071 
    51072 > hide #!4 models
    51073 
    51074 > select clear
    51075 
    51076 > show #!10 models
    51077 
    51078 > close #11-13
    51079 
    51080 > hide #!10 models
    51081 
    51082 > show #!10 models
    51083 
    51084 > show #9 models
    51085 
    51086 > hide #9 models
    51087 
    51088 > show #9 models
    51089 
    51090 > show #!6 models
    51091 
    51092 > hide #!6 models
    51093 
    51094 > show #!7 models
    51095 
    51096 > hide #!7 models
    51097 
    51098 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    51099 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    51100 > refinment/PflCD_Docking_model_Fig3/REDO/Models/fold_2025_07_22_09_45cj_pilm_pilnnterm/fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif"
    51101 
    51102 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif #11 
    51103 --- 
    51104 Chain | Description 
    51105 A | . 
    51106 B | . 
    51107  
    51108 
    51109 > select add #11
    51110 
    51111 2872 atoms, 2930 bonds, 346 residues, 1 model selected 
    51112 
    51113 > view matrix models #11,1,0,0,76.462,0,1,0,-68.169,0,0,1,159.41
    51114 
    51115 > view matrix models #11,1,0,0,307.15,0,1,0,91.026,0,0,1,102.81
    51116 
    51117 > hide #!10 models
    51118 
    51119 > show #!10 models
    51120 
    51121 > hide #10.1 models
    51122 
    51123 > show #10.1 models
    51124 
    51125 > hide #10.1 models
    51126 
    51127 > hide #10.3 models
    51128 
    51129 > matchmaker #11 to #10.2
    51130 
    51131 Parameters 
    51132 --- 
    51133 Chain pairing | bb 
    51134 Alignment algorithm | Needleman-Wunsch 
    51135 Similarity matrix | BLOSUM-62 
    51136 SS fraction | 0.3 
    51137 Gap open (HH/SS/other) | 18/18/6 
    51138 Gap extend | 1 
    51139 SS matrix |  |  | H | S | O 
    51140 ---|---|---|--- 
    51141 H | 6 | -9 | -6 
    51142 S |  | 6 | -6 
    51143 O |  |  | 4 
    51144 Iteration cutoff | 2 
    51145  
    51146 Matchmaker One_unit_JBM_PilNO_PflD.pdb, chain K (#10.2) with
    51147 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif, chain B (#11), sequence
    51148 alignment score = 124 
    51149 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    51150 7.178) 
    51151  
    51152 
    51153 > hide #9 models
    51154 
    51155 > split #11
    51156 
    51157 Split fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif (#11) into 2 models 
    51158 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif A
    51159 #11.1 
    51160 --- 
    51161 Chain | Description 
    51162 A | No description available 
    51163  
    51164 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B
    51165 #11.2 
    51166 --- 
    51167 Chain | Description 
    51168 B | No description available 
    51169  
    51170 
    51171 > hide #11.1 models
    51172 
    51173 > show #11.1 models
    51174 
    51175 > hide #11.1 models
    51176 
    51177 > matchmaker #11.2 to #10.2
    51178 
    51179 Parameters 
    51180 --- 
    51181 Chain pairing | bb 
    51182 Alignment algorithm | Needleman-Wunsch 
    51183 Similarity matrix | BLOSUM-62 
    51184 SS fraction | 0.3 
    51185 Gap open (HH/SS/other) | 18/18/6 
    51186 Gap extend | 1 
    51187 SS matrix |  |  | H | S | O 
    51188 ---|---|---|--- 
    51189 H | 6 | -9 | -6 
    51190 S |  | 6 | -6 
    51191 O |  |  | 4 
    51192 Iteration cutoff | 2 
    51193  
    51194 Matchmaker One_unit_JBM_PilNO_PflD.pdb, chain K (#10.2) with
    51195 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B, chain B (#11.2),
    51196 sequence alignment score = 124 
    51197 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    51198 7.178) 
    51199  
    51200 
    51201 > matchmaker #11.2 to #10.2
    51202 
    51203 Parameters 
    51204 --- 
    51205 Chain pairing | bb 
    51206 Alignment algorithm | Needleman-Wunsch 
    51207 Similarity matrix | BLOSUM-62 
    51208 SS fraction | 0.3 
    51209 Gap open (HH/SS/other) | 18/18/6 
    51210 Gap extend | 1 
    51211 SS matrix |  |  | H | S | O 
    51212 ---|---|---|--- 
    51213 H | 6 | -9 | -6 
    51214 S |  | 6 | -6 
    51215 O |  |  | 4 
    51216 Iteration cutoff | 2 
    51217  
    51218 Matchmaker One_unit_JBM_PilNO_PflD.pdb, chain K (#10.2) with
    51219 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B, chain B (#11.2),
    51220 sequence alignment score = 124 
    51221 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    51222 7.178) 
    51223  
    51224 
    51225 > show #11.1 models
    51226 
    51227 > hide #11.1 models
    51228 
    51229 > show #11.1 models
    51230 
    51231 > hide #11.1 models
    51232 
    51233 > show #11.1 models
    51234 
    51235 > hide #11.1 models
    51236 
    51237 > show #11.1 models
    51238 
    51239 > hide #11.2 models
    51240 
    51241 > show #10.3 models
    51242 
    51243 > show #10.1 models
    51244 
    51245 > select add #11.1
    51246 
    51247 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    51248 
    51249 > select add #10.3
    51250 
    51251 3992 atoms, 4074 bonds, 481 residues, 2 models selected 
    51252 
    51253 > select add #10.2
    51254 
    51255 5450 atoms, 5562 bonds, 656 residues, 3 models selected 
    51256 
    51257 > select add #10.1
    51258 
    51259 6992 atoms, 7126 bonds, 845 residues, 4 models selected 
    51260 
    51261 > save /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflDwithPilM.pdb selectedOnly
    51262 > true
    51263 
    51264 > select clear
    51265 
    51266 > open /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflDwithPilM.pdb
    51267 
    51268 Summary of feedback from opening
    51269 /Users/shoichi/Desktop/One_unit_JBM_PilNO_PflDwithPilM.pdb 
    51270 --- 
    51271 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    51272 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    51273 42 
    51274 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51275 8 
    51276 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51277 1 7 
    51278 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51279 1 3 
    51280 35 messages similar to the above omitted 
    51281 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    51282 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51283 8 
    51284 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51285 1 7 
    51286 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51287 1 3 
    51288 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    51289 1 3 
    51290 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    51291 1 6 
    51292 6 messages similar to the above omitted 
    51293  
    51294 Chain information for One_unit_JBM_PilNO_PflDwithPilM.pdb 
    51295 --- 
    51296 Chain | Description 
    51297 12.4/A | No description available 
    51298 12.1/J | No description available 
    51299 12.2/K | No description available 
    51300 12.3/L | No description available 
    51301  
    51302 
    51303 > hide #!10 models
    51304 
    51305 > hide #!11 models
    51306 
    51307 > combine #12
    51308 
    51309 > hide #!12 models
    51310 
    51311 > show #!5 models
    51312 
    51313 > hide #!5 models
    51314 
    51315 > show #!5 models
    51316 
    51317 > hide #!5 models
    51318 
    51319 > show #!6 models
    51320 
    51321 > show #!4 models
    51322 
    51323 > select add #13
    51324 
    51325 6992 atoms, 7126 bonds, 845 residues, 1 model selected 
    51326 
    51327 > ui mousemode right "rotate selected models"
    51328 
    51329 > view matrix models
    51330 > #13,0.99951,-0.00089194,-0.031358,5.7809,-0.0035041,0.99017,-0.13986,26.842,0.031174,0.1399,0.98968,-23.458
    51331 
    51332 > ui mousemode right "translate selected models"
    51333 
    51334 > view matrix models
    51335 > #13,0.99951,-0.00089194,-0.031358,8.4964,-0.0035041,0.99017,-0.13986,39.04,0.031174,0.1399,0.98968,-24.631
    51336 
    51337 > ui mousemode right "rotate selected models"
    51338 
    51339 > view matrix models
    51340 > #13,0.99899,-0.0026302,-0.044765,11.214,-0.0063545,0.9799,-0.19939,51.565,0.044389,0.19947,0.9789,-33.477
    51341 
    51342 > ui mousemode right "translate selected models"
    51343 
    51344 > view matrix models
    51345 > #13,0.99899,-0.0026302,-0.044765,12.596,-0.0063545,0.9799,-0.19939,57.776,0.044389,0.19947,0.9789,-34.052
    51346 
    51347 > select clear
    51348 
    51349 > hide #!4 models
    51350 
    51351 > show #!10 models
    51352 
    51353 > hide #!10 models
    51354 
    51355 Drag select of 19 residues 
    51356 Drag select of 181 residues 
    51357 Drag select of 22 residues 
    51358 
    51359 > select add #6.22
    51360 
    51361 3293 atoms, 1564 bonds, 404 residues, 4 models selected 
    51362 
    51363 > select add #6.23
    51364 
    51365 4701 atoms, 3052 bonds, 573 residues, 4 models selected 
    51366 
    51367 > select add #6.24
    51368 
    51369 5387 atoms, 4440 bonds, 656 residues, 4 models selected 
    51370 
    51371 > select add #6.28
    51372 
    51373 7209 atoms, 7354 bonds, 882 residues, 4 models selected 
    51374 
    51375 > save /Users/shoichi/Desktop/2nd_unit_PilNO_PflDC_JMB.pdb selectedOnly true
    51376 
    51377 > select clear
    51378 
    51379 > open /Users/shoichi/Desktop/2nd_unit_PilNO_PflDC_JMB.pdb
    51380 
    51381 Summary of feedback from opening
    51382 /Users/shoichi/Desktop/2nd_unit_PilNO_PflDC_JMB.pdb 
    51383 --- 
    51384 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    51385 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    51386 42 
    51387 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51388 8 
    51389 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51390 1 7 
    51391 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51392 1 3 
    51393 47 messages similar to the above omitted 
    51394  
    51395 Chain information for 2nd_unit_PilNO_PflDC_JMB.pdb 
    51396 --- 
    51397 Chain | Description 
    51398 14.1/V | No description available 
    51399 14.2/W | No description available 
    51400 14.3/X | No description available 
    51401 14.4/c | No description available 
    51402  
    51403 
    51404 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    51405 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    51406 > refinment/PflCD_Docking_model_Fig3/REDO/Models/fold_2025_07_22_09_45cj_pilm_pilnnterm/fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif"
    51407 
    51408 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif #15 
    51409 --- 
    51410 Chain | Description 
    51411 A | . 
    51412 B | . 
    51413  
    51414 
    51415 > select add #15
    51416 
    51417 2872 atoms, 2930 bonds, 346 residues, 1 model selected 
    51418 
    51419 > view matrix models #15,1,0,0,29.872,0,1,0,201.61,0,0,1,38.462
    51420 
    51421 > view matrix models #15,1,0,0,167.09,0,1,0,209.12,0,0,1,202.88
    51422 
    51423 > view matrix models #15,1,0,0,343.71,0,1,0,275.21,0,0,1,157.7
    51424 
    51425 > view matrix models #15,1,0,0,364.43,0,1,0,188.41,0,0,1,97.033
    51426 
    51427 > hide #!6 models
    51428 
    51429 > hide #14.3 models
    51430 
    51431 > hide #14.4 models
    51432 
    51433 > hide #14.2 models
    51434 
    51435 > show #14.2 models
    51436 
    51437 > matchmaker #15 to #14.2
    51438 
    51439 Parameters 
    51440 --- 
    51441 Chain pairing | bb 
    51442 Alignment algorithm | Needleman-Wunsch 
    51443 Similarity matrix | BLOSUM-62 
    51444 SS fraction | 0.3 
    51445 Gap open (HH/SS/other) | 18/18/6 
    51446 Gap extend | 1 
    51447 SS matrix |  |  | H | S | O 
    51448 ---|---|---|--- 
    51449 H | 6 | -9 | -6 
    51450 S |  | 6 | -6 
    51451 O |  |  | 4 
    51452 Iteration cutoff | 2 
    51453  
    51454 Matchmaker 2nd_unit_PilNO_PflDC_JMB.pdb, chain W (#14.2) with
    51455 fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif, chain B (#15), sequence
    51456 alignment score = 124 
    51457 RMSD between 7 pruned atom pairs is 1.601 angstroms; (across all 27 pairs:
    51458 7.178) 
    51459  
    51460 
    51461 > show #!4 models
    51462 
    51463 > show #14.3 models
    51464 
    51465 > show #14.4 models
    51466 
    51467 > show #!3 models
    51468 
    51469 > select subtract #15
    51470 
    51471 Nothing selected 
    51472 
    51473 > hide #!4 models
    51474 
    51475 > hide #!3 models
    51476 
    51477 > split #15
    51478 
    51479 Split fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif (#15) into 2 models 
    51480 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif A
    51481 #15.1 
    51482 --- 
    51483 Chain | Description 
    51484 A | No description available 
    51485  
    51486 Chain information for fold_2025_07_22_09_45cj_pilm_pilnnterm_model_0.cif B
    51487 #15.2 
    51488 --- 
    51489 Chain | Description 
    51490 B | No description available 
    51491  
    51492 
    51493 > hide #15.1 models
    51494 
    51495 > show #15.1 models
    51496 
    51497 > hide #15.2 models
    51498 
    51499 > select add #15.1
    51500 
    51501 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    51502 
    51503 > select add #14.4
    51504 
    51505 5491 atoms, 5600 bonds, 675 residues, 2 models selected 
    51506 
    51507 > select add #14.3
    51508 
    51509 6846 atoms, 6988 bonds, 837 residues, 3 models selected 
    51510 
    51511 > select add #14.2
    51512 
    51513 8304 atoms, 8476 bonds, 1012 residues, 4 models selected 
    51514 
    51515 > select add #14.1
    51516 
    51517 9846 atoms, 10040 bonds, 1201 residues, 5 models selected 
    51518 
    51519 > show #!5 models
    51520 
    51521 > hide #!5 models
    51522 
    51523 > show #!4 models
    51524 
    51525 > select clear
    51526 
    51527 > select add #13
    51528 
    51529 6992 atoms, 7126 bonds, 845 residues, 1 model selected 
    51530 
    51531 > ui mousemode right "rotate selected models"
    51532 
    51533 > view matrix models
    51534 > #13,0.99917,0.0010713,-0.040602,11.396,-0.0082341,0.98424,-0.17667,53.883,0.039772,0.17685,0.98343,-30.897
    51535 
    51536 > ui mousemode right "translate selected models"
    51537 
    51538 > view matrix models
    51539 > #13,0.99917,0.0010713,-0.040602,10.523,-0.0082341,0.98424,-0.17667,49.692,0.039772,0.17685,0.98343,-30.883
    51540 
    51541 > view orient
    51542 
    51543 > split #15turn x 90
    51544 
    51545 Expected a structures specifier or a keyword 
    51546 
    51547 > turn x 90
    51548 
    51549 [Repeated 1 time(s)]
    51550 
    51551 > hide #!4 models
    51552 
    51553 > select clear
    51554 
    51555 > show #!3 models
    51556 
    51557 > show #!4 models
    51558 
    51559 > select add #13
    51560 
    51561 6992 atoms, 7126 bonds, 845 residues, 1 model selected 
    51562 
    51563 > select add #14
    51564 
    51565 14201 atoms, 14480 bonds, 1727 residues, 6 models selected 
    51566 
    51567 > select add #15.1
    51568 
    51569 16838 atoms, 17166 bonds, 2046 residues, 7 models selected 
    51570 
    51571 > save /Users/shoichi/Desktop/Cage_PflDC_JMB_Modified.pdb selectedOnly true
    51572 
    51573 > open /Users/shoichi/Desktop/Cage_PflDC_JMB_Modified.pdb
    51574 
    51575 Summary of feedback from opening
    51576 /Users/shoichi/Desktop/Cage_PflDC_JMB_Modified.pdb 
    51577 --- 
    51578 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    51579 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    51580 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51581 8 
    51582 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51583 1 7 
    51584 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51585 1 3 
    51586 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    51587 1 3 
    51588 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    51589 1 6 
    51590 59 messages similar to the above omitted 
    51591 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    51592 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51593 8 
    51594 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51595 1 7 
    51596 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51597 1 3 
    51598 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    51599 1 3 
    51600 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    51601 1 6 
    51602 6 messages similar to the above omitted 
    51603  
    51604 Chain information for Cage_PflDC_JMB_Modified.pdb 
    51605 --- 
    51606 Chain | Description 
    51607 16.1/A 16.6/A | No description available 
    51608 16.1/J 16.2/V | No description available 
    51609 16.1/K 16.3/W | No description available 
    51610 16.1/L 16.4/X | No description available 
    51611 16.5/c | No description available 
    51612  
    51613 
    51614 > select clear
    51615 
    51616 > select add #16
    51617 
    51618 16838 atoms, 17166 bonds, 2046 residues, 7 models selected 
    51619 
    51620 > combine #16
    51621 
    51622 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    51623 
    51624 > select subtract #16
    51625 
    51626 Nothing selected 
    51627 
    51628 > hide #!16 models
    51629 
    51630 > show #!6 models
    51631 
    51632 > hide #!4 models
    51633 
    51634 Drag select of 83 residues 
    51635 
    51636 > select add #6.1
    51637 
    51638 2066 atoms, 1564 bonds, 254 residues, 6 models selected 
    51639 
    51640 > select add #6.2
    51641 
    51642 3402 atoms, 3052 bonds, 414 residues, 6 models selected 
    51643 
    51644 > select add #6.3
    51645 
    51646 4689 atoms, 4440 bonds, 568 residues, 6 models selected 
    51647 
    51648 > select add #6.13
    51649 
    51650 6092 atoms, 6004 bonds, 739 residues, 6 models selected 
    51651 
    51652 > select add #6.14
    51653 
    51654 7424 atoms, 7492 bonds, 898 residues, 6 models selected 
    51655 
    51656 > select add #6.15
    51657 
    51658 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51659 
    51660 > select add #6.16
    51661 
    51662 10252 atoms, 10444 bonds, 1241 residues, 7 models selected 
    51663 
    51664 > select subtract #6.16
    51665 
    51666 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51667 
    51668 > select add #6.28
    51669 
    51670 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51671 
    51672 > select add #6.27
    51673 
    51674 14418 atoms, 14708 bonds, 1764 residues, 8 models selected 
    51675 
    51676 > select subtract #6.27
    51677 
    51678 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51679 
    51680 > select add #6.26
    51681 
    51682 14418 atoms, 14708 bonds, 1764 residues, 8 models selected 
    51683 
    51684 > select subtract #6.26
    51685 
    51686 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51687 
    51688 > select add #6.25
    51689 
    51690 14418 atoms, 14708 bonds, 1764 residues, 8 models selected 
    51691 
    51692 > select subtract #6.25
    51693 
    51694 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51695 
    51696 > select add #6.24
    51697 
    51698 12919 atoms, 13182 bonds, 1570 residues, 8 models selected 
    51699 
    51700 > select subtract #6.28
    51701 
    51702 10065 atoms, 10268 bonds, 1214 residues, 7 models selected 
    51703 
    51704 > select subtract #6.24
    51705 
    51706 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51707 
    51708 > select add #6.23
    51709 
    51710 10168 atoms, 10368 bonds, 1227 residues, 7 models selected 
    51711 
    51712 > select subtract #6.23
    51713 
    51714 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51715 
    51716 > select add #6.22
    51717 
    51718 10252 atoms, 10444 bonds, 1241 residues, 7 models selected 
    51719 
    51720 > select subtract #6.22
    51721 
    51722 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51723 
    51724 > select add #6.21
    51725 
    51726 10065 atoms, 10268 bonds, 1214 residues, 7 models selected 
    51727 
    51728 > select subtract #6.21
    51729 
    51730 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51731 
    51732 > select add #6.20
    51733 
    51734 10168 atoms, 10368 bonds, 1227 residues, 7 models selected 
    51735 
    51736 > select subtract #6.20
    51737 
    51738 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51739 
    51740 > select add #6.27
    51741 
    51742 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51743 
    51744 > select subtract #6.27
    51745 
    51746 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51747 
    51748 > select add #6.28
    51749 
    51750 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51751 
    51752 > select subtract #6.28
    51753 
    51754 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51755 
    51756 > select add #6.26
    51757 
    51758 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51759 
    51760 > select subtract #6.26
    51761 
    51762 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    51763 
    51764 > select add #6.25
    51765 
    51766 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    51767 
    51768 > save /Users/shoichi/Desktop/2nd-template_from_JMB.pdb selectedOnly true
    51769 
    51770 > hide #!6 models
    51771 
    51772 > select clear
    51773 
    51774 > open /Users/shoichi/Desktop/2nd-template_from_JMB.pdb
    51775 
    51776 Summary of feedback from opening /Users/shoichi/Desktop/2nd-
    51777 template_from_JMB.pdb 
    51778 --- 
    51779 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    51780 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    51781 42 
    51782 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51783 8 
    51784 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51785 1 7 
    51786 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51787 1 3 
    51788 73 messages similar to the above omitted 
    51789  
    51790 Chain information for 2nd-template_from_JMB.pdb 
    51791 --- 
    51792 Chain | Description 
    51793 18.1/A 18.4/M | No description available 
    51794 18.2/B 18.5/N | No description available 
    51795 18.3/C 18.6/O | No description available 
    51796 18.7/Y | No description available 
    51797  
    51798 
    51799 > combine #18
    51800 
    51801 > matchmaker #17 to #19
    51802 
    51803 Parameters 
    51804 --- 
    51805 Chain pairing | bb 
    51806 Alignment algorithm | Needleman-Wunsch 
    51807 Similarity matrix | BLOSUM-62 
    51808 SS fraction | 0.3 
    51809 Gap open (HH/SS/other) | 18/18/6 
    51810 Gap extend | 1 
    51811 SS matrix |  |  | H | S | O 
    51812 ---|---|---|--- 
    51813 H | 6 | -9 | -6 
    51814 S |  | 6 | -6 
    51815 O |  |  | 4 
    51816 Iteration cutoff | 2 
    51817  
    51818 Matchmaker combination, chain Y (#19) with combination, chain c (#17),
    51819 sequence alignment score = 1828.6 
    51820 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    51821 0.001) 
    51822  
    51823 
    51824 > hide #!18 models
    51825 
    51826 > hide #19 models
    51827 
    51828 > show #!18 models
    51829 
    51830 > hide #!18 models
    51831 
    51832 > show #19 models
    51833 
    51834 > hide #19 models
    51835 
    51836 > hide #17 models
    51837 
    51838 > show #17 models
    51839 
    51840 > close #17
    51841 
    51842 > show #!18 models
    51843 
    51844 > hide #!18 models
    51845 
    51846 > hide #!14 models
    51847 
    51848 > show #!14 models
    51849 
    51850 > hide #!15 models
    51851 
    51852 > show #!15 models
    51853 
    51854 > close #16
    51855 
    51856 > select add #14
    51857 
    51858 7209 atoms, 7354 bonds, 882 residues, 5 models selected 
    51859 
    51860 > select add #15
    51861 
    51862 10081 atoms, 10284 bonds, 1228 residues, 8 models selected 
    51863 
    51864 > show #!5 models
    51865 
    51866 > hide #!5 models
    51867 
    51868 > show #!4 models
    51869 
    51870 > view matrix models
    51871 > #14,1,0,0,3.3676,0,1,0,-0.44796,0,0,1,-0.20608,#15,1,0,0,3.3676,0,1,0,-0.44796,0,0,1,-0.20608
    51872 
    51873 > view matrix models
    51874 > #14,1,0,0,6.2868,0,1,0,0.2217,0,0,1,-0.99469,#15,1,0,0,6.2868,0,1,0,0.2217,0,0,1,-0.99469
    51875 
    51876 > view matrix models
    51877 > #14,1,0,0,2.3606,0,1,0,0.057463,0,0,1,-1.1217,#15,1,0,0,2.3606,0,1,0,0.057463,0,0,1,-1.1217
    51878 
    51879 > ui mousemode right "rotate selected models"
    51880 
    51881 > view matrix models
    51882 > #14,0.99999,0.00061754,0.0051091,1.1528,-0.00062903,1,0.0022477,-0.23281,-0.0051077,-0.0022509,0.99998,0.85808,#15,0.99999,0.00061754,0.0051091,1.1528,-0.00062903,1,0.0022477,-0.23281,-0.0051077,-0.0022509,0.99998,0.85808
    51883 
    51884 > undo
    51885 
    51886 > ui mousemode right "translate selected models"
    51887 
    51888 > view matrix models
    51889 > #14,1,0,0,2.633,0,1,0,0.17005,0,0,1,-1.182,#15,1,0,0,2.633,0,1,0,0.17005,0,0,1,-1.182
    51890 
    51891 > view matrix models
    51892 > #14,1,0,0,3.0941,0,1,0,0.17912,0,0,1,-1.2208,#15,1,0,0,3.0941,0,1,0,0.17912,0,0,1,-1.2208
    51893 
    51894 > view matrix models
    51895 > #14,1,0,0,3.0428,0,1,0,-0.8073,0,0,1,-1.045,#15,1,0,0,3.0428,0,1,0,-0.8073,0,0,1,-1.045
    51896 
    51897 > undo
    51898 
    51899 [Repeated 6 time(s)]
    51900 
    51901 > show #!4 models
    51902 
    51903 > view matrix models
    51904 > #14,1,0,0,-0.29071,0,1,0,-2.0166,0,0,1,0.11827,#15,1,0,0,-0.29071,0,1,0,-2.0166,0,0,1,0.11827
    51905 
    51906 > ui mousemode right "rotate selected models"
    51907 
    51908 > view matrix models
    51909 > #14,0.99998,0.0030942,0.0046981,-1.8586,-0.0032499,0.99943,0.033503,-8.1288,-0.0045918,-0.033518,0.99943,7.731,#15,0.99998,0.0030942,0.0046981,-1.8586,-0.0032499,0.99943,0.033503,-8.1288,-0.0045918,-0.033518,0.99943,7.731
    51910 
    51911 > undo
    51912 
    51913 [Repeated 1 time(s)]
    51914 
    51915 > select clear
    51916 
    51917 > show #!12 models
    51918 
    51919 > hide #!12 models
    51920 
    51921 > show #!18 models
    51922 
    51923 > hide #!18 models
    51924 
    51925 > show #!18 models
    51926 
    51927 > show #!6 models
    51928 
    51929 > hide #!6 models
    51930 
    51931 > show #!6 models
    51932 
    51933 > hide #!6 models
    51934 
    51935 > show #!6 models
    51936 
    51937 > hide #!6 models
    51938 
    51939 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    51940 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    51941 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb"
    51942 
    51943 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    51944 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    51945 refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb 
    51946 --- 
    51947 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    51948 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    51949 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51950 8 
    51951 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51952 1 7 
    51953 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51954 1 3 
    51955 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    51956 1 3 
    51957 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    51958 1 6 
    51959 59 messages similar to the above omitted 
    51960 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    51961 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    51962 8 
    51963 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    51964 1 7 
    51965 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    51966 1 3 
    51967 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    51968 1 3 
    51969 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    51970 1 6 
    51971 6 messages similar to the above omitted 
    51972  
    51973 Chain information for Cage_PflDC_JMB_Modified.pdb 
    51974 --- 
    51975 Chain | Description 
    51976 16.1/A 16.6/A | No description available 
    51977 16.1/J 16.2/V | No description available 
    51978 16.1/K 16.3/W | No description available 
    51979 16.1/L 16.4/X | No description available 
    51980 16.5/c | No description available 
    51981  
    51982 
    51983 > combine #16
    51984 
    51985 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    51986 
    51987 > matchmaker #17 to #19
    51988 
    51989 Parameters 
    51990 --- 
    51991 Chain pairing | bb 
    51992 Alignment algorithm | Needleman-Wunsch 
    51993 Similarity matrix | BLOSUM-62 
    51994 SS fraction | 0.3 
    51995 Gap open (HH/SS/other) | 18/18/6 
    51996 Gap extend | 1 
    51997 SS matrix |  |  | H | S | O 
    51998 ---|---|---|--- 
    51999 H | 6 | -9 | -6 
    52000 S |  | 6 | -6 
    52001 O |  |  | 4 
    52002 Iteration cutoff | 2 
    52003  
    52004 Matchmaker combination, chain Y (#19) with combination, chain c (#17),
    52005 sequence alignment score = 1828.6 
    52006 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    52007 0.001) 
    52008  
    52009 
    52010 > hide #17 models
    52011 
    52012 > show #17 models
    52013 
    52014 > hide #!18 models
    52015 
    52016 > show #!6 models
    52017 
    52018 > hide #6.28 models
    52019 
    52020 > show #6.28 models
    52021 
    52022 > hide #!4 models
    52023 
    52024 > hide #!3 models
    52025 
    52026 > show #!3 models
    52027 
    52028 Drag select of 144 residues 
    52029 
    52030 > select add #6.7
    52031 
    52032 2479 atoms, 1564 bonds, 303 residues, 6 models selected 
    52033 
    52034 > select add #6.8
    52035 
    52036 3723 atoms, 3052 bonds, 452 residues, 6 models selected 
    52037 
    52038 > select add #6.9
    52039 
    52040 4933 atoms, 4440 bonds, 597 residues, 6 models selected 
    52041 
    52042 > hide #!3 models
    52043 
    52044 > select add #6.19
    52045 
    52046 6230 atoms, 6004 bonds, 756 residues, 6 models selected 
    52047 
    52048 > select add #6.20
    52049 
    52050 7480 atoms, 7492 bonds, 905 residues, 6 models selected 
    52051 
    52052 > select add #6.21
    52053 
    52054 8710 atoms, 8880 bonds, 1052 residues, 6 models selected 
    52055 Drag select of 108 residues 
    52056 
    52057 > select add #6.27
    52058 
    52059 11564 atoms, 11794 bonds, 1408 residues, 7 models selected 
    52060 
    52061 > save /Users/shoichi/Desktop/3rd_template_JMB.pdb selectedOnly true
    52062 
    52063 > open /Users/shoichi/Desktop/3rd_template_JMB.pdb
    52064 
    52065 Summary of feedback from opening /Users/shoichi/Desktop/3rd_template_JMB.pdb 
    52066 --- 
    52067 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    52068 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    52069 42 
    52070 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52071 8 
    52072 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52073 1 7 
    52074 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52075 1 3 
    52076 86 messages similar to the above omitted 
    52077  
    52078 Chain information for 3rd_template_JMB.pdb 
    52079 --- 
    52080 Chain | Description 
    52081 20.1/G 20.4/S | No description available 
    52082 20.2/H 20.5/T | No description available 
    52083 20.3/I 20.6/U | No description available 
    52084 20.7/b | No description available 
    52085  
    52086 
    52087 > combine #20
    52088 
    52089 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    52090 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    52091 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb"
    52092 
    52093 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    52094 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    52095 refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Modify/Cage_PflDC_JMB_Modified.pdb 
    52096 --- 
    52097 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    52098 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    52099 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52100 8 
    52101 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52102 1 7 
    52103 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52104 1 3 
    52105 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    52106 1 3 
    52107 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    52108 1 6 
    52109 59 messages similar to the above omitted 
    52110 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    52111 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52112 8 
    52113 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52114 1 7 
    52115 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52116 1 3 
    52117 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    52118 1 3 
    52119 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    52120 1 6 
    52121 6 messages similar to the above omitted 
    52122  
    52123 Chain information for Cage_PflDC_JMB_Modified.pdb 
    52124 --- 
    52125 Chain | Description 
    52126 22.1/A 22.6/A | No description available 
    52127 22.1/J 22.2/V | No description available 
    52128 22.1/K 22.3/W | No description available 
    52129 22.1/L 22.4/X | No description available 
    52130 22.5/c | No description available 
    52131  
    52132 
    52133 > close #22
    52134 
    52135 > combine #16
    52136 
    52137 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    52138 
    52139 > matchmaker #22 to #21
    52140 
    52141 Parameters 
    52142 --- 
    52143 Chain pairing | bb 
    52144 Alignment algorithm | Needleman-Wunsch 
    52145 Similarity matrix | BLOSUM-62 
    52146 SS fraction | 0.3 
    52147 Gap open (HH/SS/other) | 18/18/6 
    52148 Gap extend | 1 
    52149 SS matrix |  |  | H | S | O 
    52150 ---|---|---|--- 
    52151 H | 6 | -9 | -6 
    52152 S |  | 6 | -6 
    52153 O |  |  | 4 
    52154 Iteration cutoff | 2 
    52155  
    52156 Matchmaker combination, chain b (#21) with combination, chain c (#22),
    52157 sequence alignment score = 1828.6 
    52158 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    52159 0.001) 
    52160  
    52161 
    52162 > select clear
    52163 
    52164 > hide #!6 models
    52165 
    52166 > hide #21 models
    52167 
    52168 > hide #!20 models
    52169 
    52170 > hide #13 models
    52171 
    52172 > hide #!14 models
    52173 
    52174 > show #!14 models
    52175 
    52176 > hide #!15 models
    52177 
    52178 > hide #!16 models
    52179 
    52180 > show #!16 models
    52181 
    52182 > hide #!16 models
    52183 
    52184 > hide #17 models
    52185 
    52186 > show #17 models
    52187 
    52188 > hide #!14 models
    52189 
    52190 > show #!16 models
    52191 
    52192 > show #!5 models
    52193 
    52194 > hide #!5 models
    52195 
    52196 > show #!4 models
    52197 
    52198 > hide #!4 models
    52199 
    52200 > show #!4 models
    52201 
    52202 > show #!3 models
    52203 
    52204 > hide #!4 models
    52205 
    52206 > hide #!3 models
    52207 
    52208 > split #22
    52209 
    52210 Split combination (#22) into 9 models 
    52211 Chain information for combination A #22.1 
    52212 --- 
    52213 Chain | Description 
    52214 A | No description available 
    52215  
    52216 Chain information for combination B #22.2 
    52217 --- 
    52218 Chain | Description 
    52219 B | No description available 
    52220  
    52221 Chain information for combination J #22.3 
    52222 --- 
    52223 Chain | Description 
    52224 J | No description available 
    52225  
    52226 Chain information for combination K #22.4 
    52227 --- 
    52228 Chain | Description 
    52229 K | No description available 
    52230  
    52231 Chain information for combination L #22.5 
    52232 --- 
    52233 Chain | Description 
    52234 L | No description available 
    52235  
    52236 Chain information for combination V #22.6 
    52237 --- 
    52238 Chain | Description 
    52239 V | No description available 
    52240  
    52241 Chain information for combination W #22.7 
    52242 --- 
    52243 Chain | Description 
    52244 W | No description available 
    52245  
    52246 Chain information for combination X #22.8 
    52247 --- 
    52248 Chain | Description 
    52249 X | No description available 
    52250  
    52251 Chain information for combination c #22.9 
    52252 --- 
    52253 Chain | Description 
    52254 c | No description available 
    52255  
    52256 
    52257 > hide #22.9 models
    52258 
    52259 > show #22.9 models
    52260 
    52261 > hide #22.1 models
    52262 
    52263 > hide #22.3 models
    52264 
    52265 > hide #22.4 models
    52266 
    52267 > hide #22.5 models
    52268 
    52269 > close #22.3-5
    52270 
    52271 > close #22.1
    52272 
    52273 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    52274 
    52275 ——— End of log from Wed Jul 23 10:13:39 2025 ———
    52276 
    52277 opened ChimeraX session 
    52278 
    52279 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    52280 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    52281 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/One_Cage-
    52282 > PflAB_JMB.pdb"
    52283 
    52284 Chain information for One_Cage-PflAB_JMB.pdb 
    52285 --- 
    52286 Chain | Description 
    52287 23.1/A 23.2/A 23.3/A 23.4/A | No description available 
    52288 23.5/A 23.6/A 23.7/A 23.8/A | No description available 
    52289 23.9/A 23.10/A 23.11/A 23.12/A 23.13/A | No description available 
    52290 23.1/B 23.2/B 23.3/B 23.4/B | No description available 
    52291 23.9/B 23.10/B 23.11/B 23.12/B 23.13/B | No description available 
    52292 23.1/C 23.2/C 23.3/C 23.4/C | No description available 
    52293  
    52294 
    52295 > combine #23
    52296 
    52297 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.2 to 'D' 
    52298 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.2 to 'E' 
    52299 Remapping chain ID 'C' in One_Cage-PflAB_JMB.pdb #23.2 to 'F' 
    52300 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.3 to 'G' 
    52301 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.3 to 'H' 
    52302 Remapping chain ID 'C' in One_Cage-PflAB_JMB.pdb #23.3 to 'I' 
    52303 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.4 to 'J' 
    52304 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.4 to 'K' 
    52305 Remapping chain ID 'C' in One_Cage-PflAB_JMB.pdb #23.4 to 'L' 
    52306 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.5 to 'M' 
    52307 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.6 to 'N' 
    52308 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.7 to 'O' 
    52309 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.8 to 'P' 
    52310 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.9 to 'Q' 
    52311 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.9 to 'R' 
    52312 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.10 to 'S' 
    52313 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.10 to 'T' 
    52314 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.11 to 'U' 
    52315 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.11 to 'V' 
    52316 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.12 to 'W' 
    52317 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.12 to 'X' 
    52318 Remapping chain ID 'A' in One_Cage-PflAB_JMB.pdb #23.13 to 'Y' 
    52319 Remapping chain ID 'B' in One_Cage-PflAB_JMB.pdb #23.13 to 'Z' 
    52320 
    52321 > hide #!23 models
    52322 
    52323 > hide #!24 models
    52324 
    52325 > select add #22
    52326 
    52327 9846 atoms, 10040 bonds, 1201 residues, 6 models selected 
    52328 
    52329 > select add #17
    52330 
    52331 26684 atoms, 27206 bonds, 3247 residues, 7 models selected 
    52332 
    52333 > select add #16
    52334 
    52335 43522 atoms, 44372 bonds, 5293 residues, 14 models selected 
    52336 
    52337 > save /Users/shoichi/Desktop/CagePflCD_modified_JMB.pdb selectedOnly true
    52338 
    52339 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    52340 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    52341 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/Final-
    52342 > Cage_PflDC_JMB_Modified.pdb"
    52343 
    52344 Chain information for Final-Cage_PflDC_JMB_Modified.pdb 
    52345 --- 
    52346 Chain | Description 
    52347 25.1/A 25.6/A | No description available 
    52348 25.1/J 25.2/V | No description available 
    52349 25.1/K 25.3/W | No description available 
    52350 25.1/L 25.4/X | No description available 
    52351 25.5/c | No description available 
    52352  
    52353 
    52354 > hide #!16 models
    52355 
    52356 > hide #17 models
    52357 
    52358 > hide #!22 models
    52359 
    52360 > select clear
    52361 
    52362 > close #25
    52363 
    52364 > show #!22 models
    52365 
    52366 > show #21 models
    52367 
    52368 > hide #21 models
    52369 
    52370 > show #19 models
    52371 
    52372 > show #17 models
    52373 
    52374 > hide #17 models
    52375 
    52376 > show #!15 models
    52377 
    52378 > hide #!15 models
    52379 
    52380 > show #!14 models
    52381 
    52382 > hide #!14 models
    52383 
    52384 > show #13 models
    52385 
    52386 > hide #13 models
    52387 
    52388 > show #17 models
    52389 
    52390 > hide #17 models
    52391 
    52392 > show #!16 models
    52393 
    52394 > select add #16
    52395 
    52396 16838 atoms, 17166 bonds, 2046 residues, 7 models selected 
    52397 
    52398 > select add #19
    52399 
    52400 28402 atoms, 28960 bonds, 3454 residues, 8 models selected 
    52401 
    52402 > select add #22
    52403 
    52404 38248 atoms, 39000 bonds, 4655 residues, 14 models selected 
    52405 
    52406 > hide #19 models
    52407 
    52408 > select subtract #19
    52409 
    52410 26684 atoms, 27206 bonds, 3247 residues, 13 models selected 
    52411 
    52412 > select add #21
    52413 
    52414 38248 atoms, 39000 bonds, 4655 residues, 14 models selected 
    52415 
    52416 > show #21 models
    52417 
    52418 > hide #21 models
    52419 
    52420 > show #21 models
    52421 
    52422 > select subtract #21
    52423 
    52424 26684 atoms, 27206 bonds, 3247 residues, 13 models selected 
    52425 
    52426 > hide #21 models
    52427 
    52428 > show #17 models
    52429 
    52430 > select add #17
    52431 
    52432 43522 atoms, 44372 bonds, 5293 residues, 14 models selected 
    52433 
    52434 > save /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb selectedOnly
    52435 > true
    52436 
    52437 > open /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb
    52438 
    52439 Summary of feedback from opening /Users/shoichi/Desktop/Final-Cage-
    52440 PflCD_JMB_Modified.pdb 
    52441 --- 
    52442 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    52443 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    52444 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52445 8 
    52446 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52447 1 7 
    52448 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52449 1 3 
    52450 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    52451 1 3 
    52452 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    52453 1 6 
    52454 59 messages similar to the above omitted 
    52455 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    52456 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52457 8 
    52458 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52459 1 7 
    52460 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52461 1 3 
    52462 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    52463 1 3 
    52464 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    52465 1 6 
    52466 7 messages similar to the above omitted 
    52467 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    52468 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52469 8 
    52470 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52471 1 7 
    52472 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52473 1 3 
    52474 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    52475 1 3 
    52476 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    52477 1 6 
    52478 71 messages similar to the above omitted 
    52479  
    52480 Chain information for Final-Cage-PflCD_JMB_Modified.pdb 
    52481 --- 
    52482 Chain | Description 
    52483 25.1/A 25.6/A 25.7/A 25.7/B 25.8/B | No description available 
    52484 25.1/J 25.7/J 25.2/V 25.7/V 25.9/V | No description available 
    52485 25.1/K 25.7/K 25.3/W 25.7/W 25.10/W | No description available 
    52486 25.1/L 25.7/L 25.4/X 25.7/X 25.11/X | No description available 
    52487 25.5/c 25.7/c 25.12/c | No description available 
    52488  
    52489 
    52490 The cached device pixel ratio value was stale on window expose. Please file a
    52491 QTBUG which explains how to reproduce. 
    52492 
    52493 > close #25
    52494 
    52495 > hide #!16 models
    52496 
    52497 > show #!16 models
    52498 
    52499 > hide #!22 models
    52500 
    52501 > show #!22 models
    52502 
    52503 > hide #17 models
    52504 
    52505 > show #17 models
    52506 
    52507 > show #!5 models
    52508 
    52509 > hide #!5 models
    52510 
    52511 > show #!3 models
    52512 
    52513 > hide #!3 models
    52514 
    52515 > show #!3 models
    52516 
    52517 > show #!4 models
    52518 
    52519 > hide #!4 models
    52520 
    52521 > show #!4 models
    52522 
    52523 > hide #!4 models
    52524 
    52525 > hide #!22 models
    52526 
    52527 > show #!22 models
    52528 
    52529 > hide #17 models
    52530 
    52531 > show #17 models
    52532 
    52533 > hide #17 models
    52534 
    52535 > show #17 models
    52536 
    52537 > hide #17 models
    52538 
    52539 > show #17 models
    52540 
    52541 > combine #16
    52542 
    52543 Remapping chain ID 'A' in Cage_PflDC_JMB_Modified.pdb #16.6 to 'B' 
    52544 
    52545 > combine #17
    52546 
    52547 > combine #22
    52548 
    52549 > hide #!16 models
    52550 
    52551 > hide #17 models
    52552 
    52553 > hide #!22 models
    52554 
    52555 > select clear
    52556 
    52557 > select add #25
    52558 
    52559 16838 atoms, 17166 bonds, 2046 residues, 1 model selected 
    52560 
    52561 > select add #26
    52562 
    52563 33676 atoms, 34332 bonds, 4092 residues, 2 models selected 
    52564 
    52565 > select add #27
    52566 
    52567 43522 atoms, 44372 bonds, 5293 residues, 3 models selected 
    52568 
    52569 > save /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb selectedOnly
    52570 > true
    52571 
    52572 > select clear
    52573 
    52574 > hide #25 models
    52575 
    52576 > hide #26 models
    52577 
    52578 > hide #27 models
    52579 
    52580 > open /Users/shoichi/Desktop/Final-Cage-PflCD_JMB_Modified.pdb
    52581 
    52582 Summary of feedback from opening /Users/shoichi/Desktop/Final-Cage-
    52583 PflCD_JMB_Modified.pdb 
    52584 --- 
    52585 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    52586 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    52587 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52588 8 
    52589 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52590 1 7 
    52591 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52592 1 3 
    52593 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    52594 1 3 
    52595 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    52596 1 6 
    52597 7 messages similar to the above omitted 
    52598 End residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1 42 
    52599 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    52600 8 
    52601 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    52602 1 7 
    52603 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    52604 1 3 
    52605 Start residue of secondary structure not found: HELIX 6 6 PRO A 146 ARG A 148
    52606 1 3 
    52607 Start residue of secondary structure not found: HELIX 7 7 LEU A 149 ASP A 154
    52608 1 6 
    52609 19 messages similar to the above omitted 
    52610  
    52611 Chain information for Final-Cage-PflCD_JMB_Modified.pdb 
    52612 --- 
    52613 Chain | Description 
    52614 28.1/A 28.2/A 28.1/B 28.2/B 28.3/B | No description available 
    52615 28.1/J 28.2/J 28.1/V 28.2/V 28.3/V | No description available 
    52616 28.1/K 28.2/K 28.1/W 28.2/W 28.3/W | No description available 
    52617 28.1/L 28.2/L 28.1/X 28.2/X 28.3/X | No description available 
    52618 28.1/c 28.2/c 28.3/c | No description available 
    52619  
    52620 
    52621 > close #25-27
    52622 
    52623 > select add #28
    52624 
    52625 43522 atoms, 44372 bonds, 5293 residues, 4 models selected 
    52626 
    52627 > hide sel atoms
    52628 
    52629 > show sel cartoons
    52630 
    52631 > select clear
    52632 
    52633 > combine #28
    52634 
    52635 Remapping chain ID 'A' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'C' 
    52636 Remapping chain ID 'B' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'D' 
    52637 Remapping chain ID 'J' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'M' 
    52638 Remapping chain ID 'K' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'N' 
    52639 Remapping chain ID 'L' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'O' 
    52640 Remapping chain ID 'V' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'Y' 
    52641 Remapping chain ID 'W' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'Z' 
    52642 Remapping chain ID 'X' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'a' 
    52643 Remapping chain ID 'c' in Final-Cage-PflCD_JMB_Modified.pdb #28.2 to 'd' 
    52644 Remapping chain ID 'B' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'E' 
    52645 Remapping chain ID 'V' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'b' 
    52646 Remapping chain ID 'W' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'e' 
    52647 Remapping chain ID 'X' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'f' 
    52648 Remapping chain ID 'c' in Final-Cage-PflCD_JMB_Modified.pdb #28.3 to 'g' 
    52649 
    52650 > show #!24 models
    52651 
    52652 > matchmaker #24 to #25
    52653 
    52654 Parameters 
    52655 --- 
    52656 Chain pairing | bb 
    52657 Alignment algorithm | Needleman-Wunsch 
    52658 Similarity matrix | BLOSUM-62 
    52659 SS fraction | 0.3 
    52660 Gap open (HH/SS/other) | 18/18/6 
    52661 Gap extend | 1 
    52662 SS matrix |  |  | H | S | O 
    52663 ---|---|---|--- 
    52664 H | 6 | -9 | -6 
    52665 S |  | 6 | -6 
    52666 O |  |  | 4 
    52667 Iteration cutoff | 2 
    52668  
    52669 Matchmaker combination, chain c (#25) with combination, chain M (#24),
    52670 sequence alignment score = 1828.6 
    52671 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    52672 0.001) 
    52673  
    52674 
    52675 > hide #!3 models
    52676 
    52677 > show #!4 models
    52678 
    52679 > hide #25 models
    52680 
    52681 > show #25 models
    52682 
    52683 > hide #25 models
    52684 
    52685 > hide #!24 models
    52686 
    52687 > show #!24 models
    52688 
    52689 > select add #24
    52690 
    52691 60311 atoms, 61486 bonds, 5 pseudobonds, 7438 residues, 2 models selected 
    52692 
    52693 > ui mousemode right "translate selected models"
    52694 
    52695 > view matrix models
    52696 > #24,0.87058,0.49184,0.013279,-141.73,-0.49173,0.87068,-0.010718,163.17,-0.016833,0.0028008,0.99985,-72.067
    52697 
    52698 > ui mousemode right "rotate selected models"
    52699 
    52700 > view matrix models
    52701 > #24,0.99976,0.01729,0.013741,-87.931,-0.016229,0.99713,-0.073914,14.176,-0.01498,0.073673,0.99717,-85.685
    52702 
    52703 > ui mousemode right "translate selected models"
    52704 
    52705 > view matrix models
    52706 > #24,0.99976,0.01729,0.013741,-78.781,-0.016229,0.99713,-0.073914,96.218,-0.01498,0.073673,0.99717,-90.282
    52707 
    52708 > matchmaker #24 to #25
    52709 
    52710 Parameters 
    52711 --- 
    52712 Chain pairing | bb 
    52713 Alignment algorithm | Needleman-Wunsch 
    52714 Similarity matrix | BLOSUM-62 
    52715 SS fraction | 0.3 
    52716 Gap open (HH/SS/other) | 18/18/6 
    52717 Gap extend | 1 
    52718 SS matrix |  |  | H | S | O 
    52719 ---|---|---|--- 
    52720 H | 6 | -9 | -6 
    52721 S |  | 6 | -6 
    52722 O |  |  | 4 
    52723 Iteration cutoff | 2 
    52724  
    52725 Matchmaker combination, chain c (#25) with combination, chain M (#24),
    52726 sequence alignment score = 1828.6 
    52727 RMSD between 356 pruned atom pairs is 0.001 angstroms; (across all 356 pairs:
    52728 0.001) 
    52729  
    52730 
    52731 > view matrix models
    52732 > #24,0.87058,0.49184,0.013279,-179.73,-0.49173,0.87068,-0.010718,164.3,-0.016833,0.0028008,0.99985,-75.657
    52733 
    52734 > ui mousemode right "rotate selected models"
    52735 
    52736 > view matrix models
    52737 > #24,0.99946,-0.030105,0.01296,-116.29,0.030253,0.99948,-0.011403,-19.029,-0.01261,0.011789,0.99985,-78.7
    52738 
    52739 > ui mousemode right "translate selected models"
    52740 
    52741 > view matrix models
    52742 > #24,0.99946,-0.030105,0.01296,-79.579,0.030253,0.99948,-0.011403,0.83744,-0.01261,0.011789,0.99985,-78.996
    52743 
    52744 > view matrix models
    52745 > #24,0.99946,-0.030105,0.01296,-54.482,0.030253,0.99948,-0.011403,-5.1535,-0.01261,0.011789,0.99985,-87.925
    52746 
    52747 > ui tool show "Fit in Map"
    52748 
    52749 The cached device pixel ratio value was stale on window expose. Please file a
    52750 QTBUG which explains how to reproduce. 
    52751 
    52752 [Repeated 1 time(s)]
    52753 
    52754 > fitmap #24 inMap #4
    52755 
    52756 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    52757 atoms 
    52758 average map value = 0.006174, steps = 160 
    52759 shifted from previous position = 14.8 
    52760 rotated from previous position = 9.71 degrees 
    52761 atoms outside contour = 39815, contour level = 0.0013059 
    52762  
    52763 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    52764 coordinates: 
    52765 Matrix rotation and translation 
    52766 0.98824437 -0.01429463 -0.15221278 -8.80734476 
    52767 0.00813284 0.99912492 -0.04102737 15.79098852 
    52768 0.15266605 0.03930714 0.98749584 -133.39658319 
    52769 Axis 0.25415733 -0.96455663 0.07095463 
    52770 Axis point 854.79901291 0.00000000 -78.90503148 
    52771 Rotation angle (degrees) 9.09320222 
    52772 Shift along axis -26.93485970 
    52773  
    52774 
    52775 > fitmap #24 inMap #4
    52776 
    52777 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    52778 atoms 
    52779 average map value = 0.006174, steps = 36 
    52780 shifted from previous position = 0.00634 
    52781 rotated from previous position = 0.00281 degrees 
    52782 atoms outside contour = 39814, contour level = 0.0013059 
    52783  
    52784 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    52785 coordinates: 
    52786 Matrix rotation and translation 
    52787 0.98823741 -0.01429693 -0.15225776 -8.79356980 
    52788 0.00813057 0.99912420 -0.04104537 15.80213354 
    52789 0.15271123 0.03932463 0.98748815 -133.41457102 
    52790 Axis 0.25419238 -0.96454897 0.07093318 
    52791 Axis point 854.66924028 0.00000000 -78.80434462 
    52792 Rotation angle (degrees) 9.09598705 
    52793 Shift along axis -26.94070962 
    52794  
    52795 
    52796 > fitmap #24 inMap #4
    52797 
    52798 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    52799 atoms 
    52800 average map value = 0.006174, steps = 40 
    52801 shifted from previous position = 0.00288 
    52802 rotated from previous position = 0.00501 degrees 
    52803 atoms outside contour = 39813, contour level = 0.0013059 
    52804  
    52805 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    52806 coordinates: 
    52807 Matrix rotation and translation 
    52808 0.98822490 -0.01433503 -0.15233535 -8.75430498 
    52809 0.00816568 0.99912384 -0.04104722 15.79083374 
    52810 0.15279029 0.03931996 0.98747611 -133.43773924 
    52811 Axis 0.25405846 -0.96456978 0.07112973 
    52812 Axis point 854.35445149 0.00000000 -78.56573805 
    52813 Rotation angle (degrees) 9.10050113 
    52814 Shift along axis -26.94685726 
    52815  
    52816 
    52817 > view matrix models
    52818 > #24,0.98822,-0.014335,-0.15234,-13.617,0.0081657,0.99912,-0.041047,74.125,0.15279,0.03932,0.98748,-139.29
    52819 
    52820 > fitmap #24 inMap #4
    52821 
    52822 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    52823 atoms 
    52824 average map value = 0.0166, steps = 240 
    52825 shifted from previous position = 13.5 
    52826 rotated from previous position = 15.8 degrees 
    52827 atoms outside contour = 34391, contour level = 0.0013059 
    52828  
    52829 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    52830 coordinates: 
    52831 Matrix rotation and translation 
    52832 0.97475676 -0.22232403 0.02052542 -23.12518483 
    52833 0.22250786 0.97490485 -0.00712606 -5.27372184 
    52834 -0.01842604 0.01151324 0.99976394 -69.38349145 
    52835 Axis 0.04170584 0.08715477 0.99532139 
    52836 Axis point -13.96754221 -89.20784370 0.00000000 
    52837 Rotation angle (degrees) 12.91242166 
    52838 Shift along axis -70.48295846 
    52839  
    52840 
    52841 > fitmap #24 inMap #4
    52842 
    52843 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    52844 atoms 
    52845 average map value = 0.0166, steps = 44 
    52846 shifted from previous position = 0.0384 
    52847 rotated from previous position = 0.0493 degrees 
    52848 atoms outside contour = 34392, contour level = 0.0013059 
    52849  
    52850 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    52851 coordinates: 
    52852 Matrix rotation and translation 
    52853 0.97472885 -0.22236547 0.02138398 -23.39716090 
    52854 0.22255966 0.97489289 -0.00714538 -5.30319048 
    52855 -0.01925820 0.01172402 0.99974580 -69.11523189 
    52856 Axis 0.04219684 0.09088635 0.99496688 
    52857 Axis point -15.02788372 -90.18317417 0.00000000 
    52858 Rotation angle (degrees) 12.91985606 
    52859 Shift along axis -70.23664080 
    52860  
    52861 
    52862 > fitmap #24 inMap #4
    52863 
    52864 Fit molecule combination (#24) to map Cage-PflAB.mrc gaussian (#4) using 60311
    52865 atoms 
    52866 average map value = 0.0166, steps = 44 
    52867 shifted from previous position = 0.0261 
    52868 rotated from previous position = 0.00945 degrees 
    52869 atoms outside contour = 34382, contour level = 0.0013059 
    52870  
    52871 Position of combination (#24) relative to Cage-PflAB.mrc gaussian (#4)
    52872 coordinates: 
    52873 Matrix rotation and translation 
    52874 0.97469836 -0.22249848 0.02139025 -23.34719639 
    52875 0.22269448 0.97486144 -0.00723487 -5.33061284 
    52876 -0.01924278 0.01181531 0.99974502 -69.14377033 
    52877 Axis 0.04257507 0.09081038 0.99495771 
    52878 Axis point -14.85561016 -89.79583919 0.00000000 
    52879 Rotation angle (degrees) 12.92788946 
    52880 Shift along axis -70.27321074 
    52881  
    52882 
    52883 > hide #!28 models
    52884 
    52885 > select subtract #24
    52886 
    52887 Nothing selected 
    52888 
    52889 > split #24
    52890 
    52891 Split combination (#24) into 26 models 
    52892 Chain information for combination A #24.1 
    52893 --- 
    52894 Chain | Description 
    52895 A | No description available 
    52896  
    52897 Chain information for combination B #24.2 
    52898 --- 
    52899 Chain | Description 
    52900 B | No description available 
    52901  
    52902 Chain information for combination C #24.3 
    52903 --- 
    52904 Chain | Description 
    52905 C | No description available 
    52906  
    52907 Chain information for combination D #24.4 
    52908 --- 
    52909 Chain | Description 
    52910 D | No description available 
    52911  
    52912 Chain information for combination E #24.5 
    52913 --- 
    52914 Chain | Description 
    52915 E | No description available 
    52916  
    52917 Chain information for combination F #24.6 
    52918 --- 
    52919 Chain | Description 
    52920 F | No description available 
    52921  
    52922 Chain information for combination G #24.7 
    52923 --- 
    52924 Chain | Description 
    52925 G | No description available 
    52926  
    52927 Chain information for combination H #24.8 
    52928 --- 
    52929 Chain | Description 
    52930 H | No description available 
    52931  
    52932 Chain information for combination I #24.9 
    52933 --- 
    52934 Chain | Description 
    52935 I | No description available 
    52936  
    52937 Chain information for combination J #24.10 
    52938 --- 
    52939 Chain | Description 
    52940 J | No description available 
    52941  
    52942 Chain information for combination K #24.11 
    52943 --- 
    52944 Chain | Description 
    52945 K | No description available 
    52946  
    52947 Chain information for combination L #24.12 
    52948 --- 
    52949 Chain | Description 
    52950 L | No description available 
    52951  
    52952 Chain information for combination M #24.13 
    52953 --- 
    52954 Chain | Description 
    52955 M | No description available 
    52956  
    52957 Chain information for combination N #24.14 
    52958 --- 
    52959 Chain | Description 
    52960 N | No description available 
    52961  
    52962 Chain information for combination O #24.15 
    52963 --- 
    52964 Chain | Description 
    52965 O | No description available 
    52966  
    52967 Chain information for combination P #24.16 
    52968 --- 
    52969 Chain | Description 
    52970 P | No description available 
    52971  
    52972 Chain information for combination Q #24.17 
    52973 --- 
    52974 Chain | Description 
    52975 Q | No description available 
    52976  
    52977 Chain information for combination R #24.18 
    52978 --- 
    52979 Chain | Description 
    52980 R | No description available 
    52981  
    52982 Chain information for combination S #24.19 
    52983 --- 
    52984 Chain | Description 
    52985 S | No description available 
    52986  
    52987 Chain information for combination T #24.20 
    52988 --- 
    52989 Chain | Description 
    52990 T | No description available 
    52991  
    52992 Chain information for combination U #24.21 
    52993 --- 
    52994 Chain | Description 
    52995 U | No description available 
    52996  
    52997 Chain information for combination V #24.22 
    52998 --- 
    52999 Chain | Description 
    53000 V | No description available 
    53001  
    53002 Chain information for combination W #24.23 
    53003 --- 
    53004 Chain | Description 
    53005 W | No description available 
    53006  
    53007 Chain information for combination X #24.24 
    53008 --- 
    53009 Chain | Description 
    53010 X | No description available 
    53011  
    53012 Chain information for combination Y #24.25 
    53013 --- 
    53014 Chain | Description 
    53015 Y | No description available 
    53016  
    53017 Chain information for combination Z #24.26 
    53018 --- 
    53019 Chain | Description 
    53020 Z | No description available 
    53021  
    53022 
    53023 > hide #!24.26 models
    53024 
    53025 > show #!24.26 models
    53026 
    53027 > hide #24.25 models
    53028 
    53029 > show #24.25 models
    53030 
    53031 > hide #24.23 models
    53032 
    53033 > show #24.23 models
    53034 
    53035 > hide #!24.20 models
    53036 
    53037 > show #!24.20 models
    53038 
    53039 > hide #24.19 models
    53040 
    53041 > hide #!24.18 models
    53042 
    53043 > hide #24.17 models
    53044 
    53045 > hide #24.16 models
    53046 
    53047 > show #24.16 models
    53048 
    53049 > hide #24.16 models
    53050 
    53051 > hide #24.15 models
    53052 
    53053 > hide #24.14 models
    53054 
    53055 > hide #24.13 models
    53056 
    53057 > show #24.13 models
    53058 
    53059 > hide #24.13 models
    53060 
    53061 > hide #24.12 models
    53062 
    53063 > show #24.12 models
    53064 
    53065 > hide #24.12 models
    53066 
    53067 > hide #24.11 models
    53068 
    53069 > hide #24.10 models
    53070 
    53071 > hide #24.9 models
    53072 
    53073 > hide #24.8 models
    53074 
    53075 > hide #24.7 models
    53076 
    53077 > hide #24.6 models
    53078 
    53079 > hide #24.5 models
    53080 
    53081 > hide #24.4 models
    53082 
    53083 > hide #24.3 models
    53084 
    53085 > hide #24.2 models
    53086 
    53087 > hide #24.1 models
    53088 
    53089 > select add #24.20
    53090 
    53091 5103 atoms, 5196 bonds, 1 pseudobond, 633 residues, 2 models selected 
    53092 
    53093 > select add #24.21
    53094 
    53095 6295 atoms, 6414 bonds, 1 pseudobond, 782 residues, 3 models selected 
    53096 
    53097 > select add #24.22
    53098 
    53099 11398 atoms, 11610 bonds, 2 pseudobonds, 1415 residues, 5 models selected 
    53100 
    53101 > select add #24.23
    53102 
    53103 12590 atoms, 12828 bonds, 2 pseudobonds, 1564 residues, 6 models selected 
    53104 
    53105 > select add #24.24
    53106 
    53107 17693 atoms, 18024 bonds, 3 pseudobonds, 2197 residues, 8 models selected 
    53108 
    53109 > select add #24.25
    53110 
    53111 18885 atoms, 19242 bonds, 3 pseudobonds, 2346 residues, 9 models selected 
    53112 
    53113 > select add #24.26
    53114 
    53115 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 11 models selected 
    53116 
    53117 > save /Users/shoichi/Desktop/PflB_PflAn_JMB.pdb selectedOnly true
    53118 
    53119 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    53120 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    53121 > refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/PflB_PflAn_JMB.pdb"
    53122 
    53123 Summary of feedback from opening /Volumes/Lab Backup/Jun Liu Lab 2025/Project
    53124 files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/Local-
    53125 refinment/PflCD_Docking_model_Fig3/REDO/Models/Jack_models/PflB_PflAn_JMB.pdb 
    53126 --- 
    53127 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    53128 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    53129 42 
    53130 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    53131 8 
    53132 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    53133 1 7 
    53134 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    53135 1 3 
    53136 86 messages similar to the above omitted 
    53137  
    53138 Chain information for PflB_PflAn_JMB.pdb 
    53139 --- 
    53140 Chain | Description 
    53141 26.1/T 26.3/V 26.5/X 26.7/Z | No description available 
    53142 26.2/U 26.4/W 26.6/Y | No description available 
    53143  
    53144 
    53145 > select clear
    53146 
    53147 > hide #!24 models
    53148 
    53149 > show #!28 models
    53150 
    53151 > hide #28.2 models
    53152 
    53153 > show #28.2 models
    53154 
    53155 > split #28
    53156 
    53157 Split Final-Cage-PflCD_JMB_Modified.pdb (#28.1) into 9 models 
    53158 Split Final-Cage-PflCD_JMB_Modified.pdb (#28.2) into 9 models 
    53159 Split Final-Cage-PflCD_JMB_Modified.pdb (#28.3) into 5 models 
    53160 Chain information for Final-Cage-PflCD_JMB_Modified.pdb A #28.1.1 
    53161 --- 
    53162 Chain | Description 
    53163 A | No description available 
    53164  
    53165 Chain information for Final-Cage-PflCD_JMB_Modified.pdb B #28.1.2 
    53166 --- 
    53167 Chain | Description 
    53168 B | No description available 
    53169  
    53170 Chain information for Final-Cage-PflCD_JMB_Modified.pdb J #28.1.3 
    53171 --- 
    53172 Chain | Description 
    53173 J | No description available 
    53174  
    53175 Chain information for Final-Cage-PflCD_JMB_Modified.pdb K #28.1.4 
    53176 --- 
    53177 Chain | Description 
    53178 K | No description available 
    53179  
    53180 Chain information for Final-Cage-PflCD_JMB_Modified.pdb L #28.1.5 
    53181 --- 
    53182 Chain | Description 
    53183 L | No description available 
    53184  
    53185 Chain information for Final-Cage-PflCD_JMB_Modified.pdb V #28.1.6 
    53186 --- 
    53187 Chain | Description 
    53188 V | No description available 
    53189  
    53190 Chain information for Final-Cage-PflCD_JMB_Modified.pdb W #28.1.7 
    53191 --- 
    53192 Chain | Description 
    53193 W | No description available 
    53194  
    53195 Chain information for Final-Cage-PflCD_JMB_Modified.pdb X #28.1.8 
    53196 --- 
    53197 Chain | Description 
    53198 X | No description available 
    53199  
    53200 Chain information for Final-Cage-PflCD_JMB_Modified.pdb c #28.1.9 
    53201 --- 
    53202 Chain | Description 
    53203 c | No description available 
    53204  
    53205 Chain information for Final-Cage-PflCD_JMB_Modified.pdb A #28.2.1 
    53206 --- 
    53207 Chain | Description 
    53208 A | No description available 
    53209  
    53210 Chain information for Final-Cage-PflCD_JMB_Modified.pdb B #28.2.2 
    53211 --- 
    53212 Chain | Description 
    53213 B | No description available 
    53214  
    53215 Chain information for Final-Cage-PflCD_JMB_Modified.pdb J #28.2.3 
    53216 --- 
    53217 Chain | Description 
    53218 J | No description available 
    53219  
    53220 Chain information for Final-Cage-PflCD_JMB_Modified.pdb K #28.2.4 
    53221 --- 
    53222 Chain | Description 
    53223 K | No description available 
    53224  
    53225 Chain information for Final-Cage-PflCD_JMB_Modified.pdb L #28.2.5 
    53226 --- 
    53227 Chain | Description 
    53228 L | No description available 
    53229  
    53230 Chain information for Final-Cage-PflCD_JMB_Modified.pdb V #28.2.6 
    53231 --- 
    53232 Chain | Description 
    53233 V | No description available 
    53234  
    53235 Chain information for Final-Cage-PflCD_JMB_Modified.pdb W #28.2.7 
    53236 --- 
    53237 Chain | Description 
    53238 W | No description available 
    53239  
    53240 Chain information for Final-Cage-PflCD_JMB_Modified.pdb X #28.2.8 
    53241 --- 
    53242 Chain | Description 
    53243 X | No description available 
    53244  
    53245 Chain information for Final-Cage-PflCD_JMB_Modified.pdb c #28.2.9 
    53246 --- 
    53247 Chain | Description 
    53248 c | No description available 
    53249  
    53250 Chain information for Final-Cage-PflCD_JMB_Modified.pdb B #28.3.1 
    53251 --- 
    53252 Chain | Description 
    53253 B | No description available 
    53254  
    53255 Chain information for Final-Cage-PflCD_JMB_Modified.pdb V #28.3.2 
    53256 --- 
    53257 Chain | Description 
    53258 V | No description available 
    53259  
    53260 Chain information for Final-Cage-PflCD_JMB_Modified.pdb W #28.3.3 
    53261 --- 
    53262 Chain | Description 
    53263 W | No description available 
    53264  
    53265 Chain information for Final-Cage-PflCD_JMB_Modified.pdb X #28.3.4 
    53266 --- 
    53267 Chain | Description 
    53268 X | No description available 
    53269  
    53270 Chain information for Final-Cage-PflCD_JMB_Modified.pdb c #28.3.5 
    53271 --- 
    53272 Chain | Description 
    53273 c | No description available 
    53274  
    53275 
    53276 > hide #28.1.2 models
    53277 
    53278 > show #28.1.2 models
    53279 
    53280 > hide #28.1.9 models
    53281 
    53282 > show #28.1.9 models
    53283 
    53284 > color #28.1.9 #7b80ffff
    53285 
    53286 > color #28.2.9 #7b80ffff
    53287 
    53288 > color #28.3.9 #7b80ffff
    53289 
    53290 > hide #28.3.5 models
    53291 
    53292 > show #28.3.5 models
    53293 
    53294 > color #28.3.5 #7b80ffff
    53295 
    53296 > hide #28.1.3 models
    53297 
    53298 > show #28.1.3 models
    53299 
    53300 > hide #!26.1 models
    53301 
    53302 > show #!26.1 models
    53303 
    53304 > hide #26.1.1 models
    53305 
    53306 > show #26.1.1 models
    53307 
    53308 > hide #26.1.1 models
    53309 
    53310 > show #26.1.1 models
    53311 
    53312 > hide #!26.7 models
    53313 
    53314 > show #!26.7 models
    53315 
    53316 > hide #26.6 models
    53317 
    53318 > show #26.6 models
    53319 
    53320 > color #26.6 #ca4949ff models
    53321 
    53322 > color #26.4 #ca4949ff models
    53323 
    53324 > color #26.2 #ca4949ff models
    53325 
    53326 > color #26.3 magenta models
    53327 
    53328 > color #26.7 magenta models
    53329 
    53330 > color #26.5 magenta models
    53331 
    53332 > color #26.1 magenta models
    53333 
    53334 > color #28.1.1 #a7c5d2ff models
    53335 
    53336 > select ~sel & ##selected
    53337 
    53338 Nothing selected 
    53339 
    53340 > select ~sel & ##selected
    53341 
    53342 Nothing selected 
    53343 
    53344 > select ~sel & ##selected
    53345 
    53346 Nothing selected 
    53347 
    53348 > select ~sel & ##selected
    53349 
    53350 Nothing selected 
    53351 
    53352 > color #28.2.1 #a7c5d2ff models
    53353 
    53354 > color #28.3.1 #a7c5d2ff models
    53355 
    53356 > color #28.2.2 #a7c5d2ff models
    53357 
    53358 > color #28.1.2 #a7c5d2ff models
    53359 
    53360 > hide #!4 models
    53361 
    53362 > color #28.1.3 #0b6dffff
    53363 
    53364 > hide #28.1.2 models
    53365 
    53366 > show #28.1.2 models
    53367 
    53368 > color #28.1.4 #0b6dffff
    53369 
    53370 > color #28.2.4 #0b6dffff
    53371 
    53372 > color #28.3.4 #0b6dffff
    53373 
    53374 > color #28.3.3 #0b6dffff
    53375 
    53376 > hide #28.3.3 models
    53377 
    53378 > hide #28.1.3 models
    53379 
    53380 > color #28.2.6 #0b6dffff
    53381 
    53382 > color #28.2.7 #0b6dffff
    53383 
    53384 > hide #28.2.6 models
    53385 
    53386 > hide #28.1.4 models
    53387 
    53388 > show #28.1.4 models
    53389 
    53390 > hide #28.3.4 models
    53391 
    53392 > show #28.3.3 models
    53393 
    53394 > show #28.3.4 models
    53395 
    53396 > hide #28.3.4 models
    53397 
    53398 > color #28.3.4 #7b80ffff
    53399 
    53400 > show #28.3.4 models
    53401 
    53402 > color #28.3.4 #adffc1ff
    53403 
    53404 > show #28.1.3 models
    53405 
    53406 > hide #28.1.3 models
    53407 
    53408 > show #28.1.3 models
    53409 
    53410 > color #28.1.3 #20e0ffff
    53411 
    53412 > hide #28.1.7 models
    53413 
    53414 > show #28.1.7 models
    53415 
    53416 > hide #28.1.7 models
    53417 
    53418 > show #28.1.7 models
    53419 
    53420 > color #28.1.7 #20e0ffff
    53421 
    53422 > color #28.1.6 #20e0ffff
    53423 
    53424 > color #28.1.7 #0b6dffff
    53425 
    53426 > hide #!28.3 models
    53427 
    53428 > show #!28.3 models
    53429 
    53430 > hide #28.2.3 models
    53431 
    53432 > show #28.2.3 models
    53433 
    53434 > color #28.2.3 #20e0ffff
    53435 
    53436 > show #28.2.6 models
    53437 
    53438 > hide #28.2.6 models
    53439 
    53440 > show #28.2.6 models
    53441 
    53442 > color #28.2.6 #20e0ffff
    53443 
    53444 > hide #28.3.2 models
    53445 
    53446 > show #28.3.2 models
    53447 
    53448 > color #28.3.2 #20e0ffff
    53449 
    53450 > hide #28.1.1 models
    53451 
    53452 > show #28.1.1 models
    53453 
    53454 > hide #28.1.1 models
    53455 
    53456 > show #28.1.1 models
    53457 
    53458 > split #28.1.1
    53459 
    53460 Did not split Final-Cage-PflCD_JMB_Modified.pdb A, has only one piece 
    53461 
    53462 > show #!3 models
    53463 
    53464 > show #!4 models
    53465 
    53466 > color #3-4 #c0c0c080 models
    53467 
    53468 > hide #!3 models
    53469 
    53470 > select add #4
    53471 
    53472 2 models selected 
    53473 
    53474 > hide #!26 models
    53475 
    53476 > hide #!28 models
    53477 
    53478 > hide #!4 models
    53479 
    53480 > select subtract #4
    53481 
    53482 Nothing selected 
    53483 
    53484 > show #!1 models
    53485 
    53486 > show #!2 models
    53487 
    53488 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    53489 
    53490 > ui tool show "Segment Map"
    53491 
    53492 The cached device pixel ratio value was stale on window expose. Please file a
    53493 QTBUG which explains how to reproduce. 
    53494 
    53495 Segmenting PflCD.mrc, density threshold 0.007034 
    53496 Only showing 60 of 726 regions. 
    53497 Showing 60 of 726 region surfaces 
    53498 15043 watershed regions, grouped to 726 regions 
    53499 Showing PflCD.seg - 726 regions, 60 surfaces 
    53500 
    53501 > hide #!27 models
    53502 
    53503 > show #!28 models
    53504 
    53505 > show #!26 models
    53506 
    53507 > hide #!2 models
    53508 
    53509 > hide #!1 models
    53510 
    53511 > show #!1 models
    53512 
    53513 > show #!27 models
    53514 
    53515 > select #27.5
    53516 
    53517 1 model selected 
    53518 
    53519 > select add #27.4
    53520 
    53521 2 models selected 
    53522 
    53523 > select add #27.6
    53524 
    53525 3 models selected 
    53526 
    53527 > hide #!1 models
    53528 
    53529 Grouped 3 regions 
    53530 
    53531 The cached device pixel ratio value was stale on window expose. Please file a
    53532 QTBUG which explains how to reproduce. 
    53533 
    53534 Opened PflCD_imasked as #29, grid size 200,200,200, pixel 2.14, shown at step
    53535 1, values float32 
    53536 
    53537 The cached device pixel ratio value was stale on window expose. Please file a
    53538 QTBUG which explains how to reproduce. 
    53539 
    53540 > save /Users/shoichi/Desktop/PflC-polished.mrc models #29
    53541 
    53542 Segmenting Cage-PflAB.mrc, density threshold 0.007030 
    53543 Only showing 60 of 697 regions. 
    53544 Showing 60 of 697 region surfaces 
    53545 16352 watershed regions, grouped to 697 regions 
    53546 Showing Cage-PflAB.seg - 697 regions, 60 surfaces 
    53547 
    53548 > select #27.20
    53549 
    53550 1 model selected 
    53551 Ungrouped to 2 regions 
    53552 Ungrouped to 12 regions, but did not show all surfaces, see Options 
    53553 Segmenting Cage-PflAB.mrc, density threshold 0.007030 
    53554 Only showing 60 of 697 regions. 
    53555 Showing 60 of 697 region surfaces 
    53556 16352 watershed regions, grouped to 697 regions 
    53557 Showing Cage-PflAB.seg - 697 regions, 60 surfaces 
    53558 Segmenting Cage-PflAB.mrc, density threshold 0.007030 
    53559 Showing 697 region surfaces 
    53560 16352 watershed regions, grouped to 697 regions 
    53561 Showing Cage-PflAB.seg - 697 regions, 697 surfaces 
    53562 
    53563 > select #27.20
    53564 
    53565 1 model selected 
    53566 Ungrouped to 2 regions 
    53567 
    53568 > select #27.698
    53569 
    53570 1 model selected 
    53571 Ungrouped to 9 regions 
    53572 
    53573 > select #27.706
    53574 
    53575 1 model selected 
    53576 
    53577 > select clear
    53578 
    53579 > select #27.7
    53580 
    53581 1 model selected 
    53582 Ungrouped to 2 regions 
    53583 
    53584 > select #27.708
    53585 
    53586 1 model selected 
    53587 
    53588 > select add #27.706
    53589 
    53590 2 models selected 
    53591 
    53592 > select clear
    53593 
    53594 > select #27.708
    53595 
    53596 1 model selected 
    53597 Ungrouped to 5 regions 
    53598 Ungrouped to 7 regions 
    53599 Ungrouped to 0 regions 
    53600 
    53601 > select #27.713
    53602 
    53603 1 model selected 
    53604 
    53605 > select clear
    53606 
    53607 > select #27.706
    53608 
    53609 1 model selected 
    53610 Opened Cage-PflAB_imasked as #30, grid size 200,200,200, pixel 2.14, shown at
    53611 step 1, values float32 
    53612 
    53613 The cached device pixel ratio value was stale on window expose. Please file a
    53614 QTBUG which explains how to reproduce. 
    53615 
    53616 > save /Users/shoichi/Desktop/Cage-polished.mrc models #30
    53617 
    53618 > hide #!27 models
    53619 
    53620 > select add #27
    53621 
    53622 717 models selected 
    53623 
    53624 > select subtract #27
    53625 
    53626 Nothing selected 
    53627 
    53628 > hide #!26 models
    53629 
    53630 > hide #!28 models
    53631 
    53632 > volume gaussian #29 sDev 3
    53633 
    53634 Opened PflC-polished.mrc gaussian as #31, grid size 200,200,200, pixel 2.14,
    53635 shown at step 1, values float32 
    53636 
    53637 > volume gaussian #30 sDev 3
    53638 
    53639 Opened Cage-polished.mrc gaussian as #32, grid size 200,200,200, pixel 2.14,
    53640 shown at step 1, values float32 
    53641 
    53642 > volume #31 level 0.001811
    53643 
    53644 > volume #31 level 0.001355
    53645 
    53646 > volume #32 level 0.00135
    53647 
    53648 > hide #!32 models
    53649 
    53650 > ui tool show "Map Eraser"
    53651 
    53652 > volume erase #31 center 310.54,252.16,359.07 radius 202.11 outside true
    53653 
    53654 > volume erase #31 center 86.433,242,485.85 radius 202.11
    53655 
    53656 > volume erase #31 center 495.25,235.77,181.43 radius 202.11
    53657 
    53658 > volume erase #31 center 451.37,446.66,217.02 radius 202.11
    53659 
    53660 > volume erase #31 center 466.42,111.27,194.5 radius 202.11
    53661 
    53662 > volume erase #31 center 210.09,295.03,81.331 radius 202.11
    53663 
    53664 > volume erase #31 center 481.97,351.66,535.14 radius 202.11
    53665 
    53666 > volume erase #31 center 488.2,156.87,534.3 radius 202.11
    53667 
    53668 > hide #!31 models
    53669 
    53670 > show #!32 models
    53671 
    53672 > volume erase #32 center 23.429,216.1,398.49 radius 214
    53673 
    53674 > volume erase #32 center 27.142,270.43,151.6 radius 214
    53675 
    53676 > volume erase #32 center 4.6577,123.48,180.34 radius 214
    53677 
    53678 > volume erase #32 center 19.934,117.11,34.421 radius 214
    53679 
    53680 > volume erase #32 center 60.331,307.21,2.3713 radius 214
    53681 
    53682 > volume erase #32 center 303.24,77.202,533.39 radius 214
    53683 
    53684 > volume erase #32 center 260.38,349.57,533.45 radius 214
    53685 
    53686 > volume erase #32 center 572.58,249.27,290.61 radius 214
    53687 
    53688 > volume erase #32 center 524.32,27.885,356.21 radius 214
    53689 
    53690 > volume erase #32 center 542.87,452.78,219.12 radius 214
    53691 
    53692 > volume erase #32 center 482.13,518.12,8.8554 radius 214
    53693 
    53694 > close #33
    53695 
    53696 > volume erase #32 center 174.93,578.32,93.856 radius 214
    53697 
    53698 > volume erase #32 center 417.68,515.64,393.86 radius 214
    53699 
    53700 > volume erase #32 center 177.66,186.34,-111.3 radius 214
    53701 
    53702 > hide #33 models
    53703 
    53704 > show #!31 models
    53705 
    53706 > surface dust #31-32 size 58.49
    53707 
    53708 > hide #!32 models
    53709 
    53710 > show #33 models
    53711 
    53712 > hide #33 models
    53713 
    53714 > show #33 models
    53715 
    53716 > volume erase #31 center 292.19,164.98,348.83 radius 13.054
    53717 
    53718 > close #33
    53719 
    53720 > show #!32 models
    53721 
    53722 > hide #!32 models
    53723 
    53724 > volume erase #31 center 273.22,397.73,322.99 radius 13.696
    53725 
    53726 > color #31-32 #c0c0c080 models
    53727 
    53728 > hide #!31 models
    53729 
    53730 > show #!31 models
    53731 
    53732 > show #!32 models
    53733 
    53734 > show #!29 models
    53735 
    53736 > hide #!29 models
    53737 
    53738 > show #!29 models
    53739 
    53740 > hide #!29 models
    53741 
    53742 > show #!28 models
    53743 
    53744 > show #!27 models
    53745 
    53746 > hide #!27 models
    53747 
    53748 > show #!29 models
    53749 
    53750 > hide #!29 models
    53751 
    53752 > show #!26 models
    53753 
    53754 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    53755 
    53756 Drag select of 179 residues 
    53757 
    53758 > hide #!26 models
    53759 
    53760 > show #!26 models
    53761 
    53762 > select add #26
    53763 
    53764 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 12 models selected 
    53765 
    53766 > select add #28
    53767 
    53768 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 39 models selected 
    53769 
    53770 > select add #31
    53771 
    53772 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 41 models selected 
    53773 
    53774 > select subtract #31
    53775 
    53776 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 39 models selected 
    53777 
    53778 > select add #31
    53779 
    53780 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 41 models selected 
    53781 
    53782 > select subtract #31
    53783 
    53784 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 39 models selected 
    53785 
    53786 > show sel surfaces
    53787 
    53788 > select clear
    53789 
    53790 Drag select of PflB_PflAn_JMB.pdb_T SES surface, 217184 of 558182 triangles,
    53791 226 residues 
    53792 
    53793 > hide sel surfaces
    53794 
    53795 > hide sel cartoons
    53796 
    53797 > show sel cartoons
    53798 
    53799 > hide sel cartoons
    53800 
    53801 Drag select of PflB_PflAn_JMB.pdb_T SES surface, 11215 of 558182 triangles, 13
    53802 residues 
    53803 
    53804 > hide sel surfaces
    53805 
    53806 > hide sel cartoons
    53807 
    53808 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 239671 of 558246 triangles,
    53809 304 residues, 1 pseudobonds, 32 Cage-polished.mrc gaussian 
    53810 
    53811 > hide sel cartoons
    53812 
    53813 > hide sel surfaces
    53814 
    53815 > hide sel cartoons
    53816 
    53817 > select add #26
    53818 
    53819 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 14 models selected 
    53820 
    53821 > select add #28
    53822 
    53823 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 46 models selected 
    53824 
    53825 > hide sel cartoons
    53826 
    53827 [Repeated 1 time(s)]
    53828 
    53829 > select clear
    53830 
    53831 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    53832 
    53833 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 35717 of 558246 triangles, 32
    53834 Cage-polished.mrc gaussian 
    53835 
    53836 > select subtract #32
    53837 
    53838 1 model selected 
    53839 
    53840 > hide #!26.1-7#!28.1.1-9#!28.2.1-9#!28.3.1-5 surfaces
    53841 
    53842 > show #!26.1-7#!28.1.1-9#!28.2.1-9#!28.3.1-5 surfaces
    53843 
    53844 > select clear
    53845 
    53846 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 281564 of 558246 triangles,
    53847 32 Cage-polished.mrc gaussian 
    53848 
    53849 > select clear
    53850 
    53851 Drag select of PflB_PflAn_JMB.pdb_Y SES surface, 1429 of 176284 triangles,
    53852 PflB_PflAn_JMB.pdb_Z SES surface, 312627 of 558246 triangles, 31 PflC-
    53853 polished.mrc gaussian , 32 Cage-polished.mrc gaussian 
    53854 
    53855 > select #31
    53856 
    53857 2 models selected 
    53858 Drag select of PflB_PflAn_JMB.pdb_Z SES surface, 164687 of 558246 triangles 
    53859 
    53860 > select add #26
    53861 
    53862 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 15 models selected 
    53863 
    53864 > select add #28
    53865 
    53866 67510 atoms, 68810 bonds, 4 pseudobonds, 8272 residues, 48 models selected 
    53867 
    53868 > hide sel surfaces
    53869 
    53870 > show sel cartoons
    53871 
    53872 > select clear
    53873 
    53874 Drag select of 382 residues, 1 pseudobonds, 32 Cage-polished.mrc gaussian 
    53875 
    53876 > select add #26.6
    53877 
    53878 4262 atoms, 1218 bonds, 1 pseudobond, 529 residues, 5 models selected 
    53879 
    53880 > select subtract #26.6
    53881 
    53882 3070 atoms, 1 pseudobond, 380 residues, 4 models selected 
    53883 
    53884 > hide sel cartoons
    53885 
    53886 Drag select of 334 residues, 32 Cage-polished.mrc gaussian 
    53887 
    53888 > hide sel cartoons
    53889 
    53890 > hide #!28 models
    53891 
    53892 > hide #!31 models
    53893 
    53894 > hide #!32 models
    53895 
    53896 > select add #26
    53897 
    53898 23988 atoms, 24438 bonds, 4 pseudobonds, 2979 residues, 14 models selected 
    53899 
    53900 > select subtract #26
    53901 
    53902 7 models selected 
    53903 Drag select of 2265 residues, 3 pseudobonds 
    53904 
    53905 > save /Users/shoichi/Desktop/Cropped_PflAB_Fig3.pdb selectedOnly true
    53906 
    53907 > open /Users/shoichi/Desktop/Cropped_PflAB_Fig3.pdb
    53908 
    53909 Summary of feedback from opening /Users/shoichi/Desktop/Cropped_PflAB_Fig3.pdb 
    53910 --- 
    53911 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 2 LEU A 49 1 48 
    53912 Start residue of secondary structure not found: HELIX 2 2 LEU A 50 GLU A 91 1
    53913 42 
    53914 Start residue of secondary structure not found: HELIX 3 3 ASN A 93 GLU A 100 1
    53915 8 
    53916 Start residue of secondary structure not found: HELIX 4 4 ILE A 105 PHE A 111
    53917 1 7 
    53918 Start residue of secondary structure not found: HELIX 5 5 LEU A 112 LYS A 114
    53919 1 3 
    53920 86 messages similar to the above omitted 
    53921  
    53922 Chain information for Cropped_PflAB_Fig3.pdb 
    53923 --- 
    53924 Chain | Description 
    53925 34.1/T | No description available 
    53926 34.2/U 34.4/W 34.6/Y | No description available 
    53927 34.3/V 34.5/X | No description available 
    53928 34.7/Z | No description available 
    53929  
    53930 
    53931 The cached device pixel ratio value was stale on window expose. Please file a
    53932 QTBUG which explains how to reproduce. 
    53933 
    53934 > select clear
    53935 
    53936 > hide #!26 models
    53937 
    53938 > hide #!34.1 models
    53939 
    53940 > show #!34.1 models
    53941 
    53942 > hide #34.2 models
    53943 
    53944 > hide #!34.3 models
    53945 
    53946 > show #!34.3 models
    53947 
    53948 > hide #34.4 models
    53949 
    53950 > hide #!34.5 models
    53951 
    53952 > show #!34.5 models
    53953 
    53954 > hide #34.6 models
    53955 
    53956 > color #34.1 magenta models
    53957 
    53958 > color #34.3 magenta models
    53959 
    53960 > color #34.5 magenta models
    53961 
    53962 > color #34.7 magenta models
    53963 
    53964 > color #34.2 #ca4949ff models
    53965 
    53966 > show #34.2 models
    53967 
    53968 > show #34.4 models
    53969 
    53970 > show #34.6 models
    53971 
    53972 > color #34.4 #ca4949ff models
    53973 
    53974 > color #34.6 #ca4949ff models
    53975 
    53976 > select add #34
    53977 
    53978 18239 atoms, 18574 bonds, 12 pseudobonds, 2265 residues, 12 models selected 
    53979 
    53980 > show sel surfaces
    53981 
    53982 > show #!31 models
    53983 
    53984 > show #!32 models
    53985 
    53986 > show #25 models
    53987 
    53988 > select add #25
    53989 
    53990 61761 atoms, 62946 bonds, 12 pseudobonds, 7558 residues, 20 models selected 
    53991 
    53992 > show sel surfaces
    53993 
    53994 > select clear
    53995 
    53996 > hide #!25 models
    53997 
    53998 > show #!28 models
    53999 
    54000 > select add #28
    54001 
    54002 43522 atoms, 44372 bonds, 5293 residues, 27 models selected 
    54003 
    54004 > show sel surfaces
    54005 
    54006 > select clear
    54007 
    54008 > view orient
    54009 
    54010 > turn x 90
    54011 
    54012 [Repeated 2 time(s)]
    54013 
    54014 > turn y 90
    54015 
    54016 [Repeated 2 time(s)]
    54017 
    54018 > select add #28
    54019 
    54020 43522 atoms, 44372 bonds, 5293 residues, 27 models selected 
    54021 
    54022 > hide sel cartoons
    54023 
    54024 > select clear
    54025 
    54026 > save /Users/shoichi/Desktop/Docking_models_07232025.cxs includeMaps true
    54027 
    54028 [Repeated 1 time(s)]
    54029 
    54030 ——— End of log from Wed Jul 23 17:25:02 2025 ———
    54031 
    54032 opened ChimeraX session 
    54033 Showing Cage-PflAB.seg - 716 regions, 716 surfaces 
    54034 
    54035 > close session
    54036 
    54037 > open /Users/shoichi/Desktop/Original-map-deposit/L0.12-Wild-
    54038 > type_EMD_45507.mrc
    54039 
    54040 Opened L0.12-Wild-type_EMD_45507.mrc as #1, grid size 250,250,250, pixel 4.3,
    54041 shown at level 0.262, step 1, values float32 
    54042 
    54043 > volume #1 level 0.01067
    54044 
    54045 > ui tool show "Segment Map"
    54046 
    54047 Segmenting L0.12-Wild-type_EMD_45507.mrc, density threshold 0.010668 
    54048 Showing 1281 region surfaces 
    54049 12116 watershed regions, grouped to 1281 regions 
    54050 Showing L0.12-Wild-type_EMD_45507.seg - 1281 regions, 1281 surfaces 
    54051 
    54052 > select #2.18
    54053 
    54054 1 model selected 
    54055 
    54056 > select add #2.73
    54057 
    54058 2 models selected 
    54059 
    54060 > select add #2.37
    54061 
    54062 3 models selected 
    54063 
    54064 > select add #2.20
    54065 
    54066 4 models selected 
    54067 
    54068 > select add #2.16
    54069 
    54070 5 models selected 
    54071 
    54072 > select add #2.42
    54073 
    54074 6 models selected 
    54075 
    54076 > select add #2.88
    54077 
    54078 7 models selected 
    54079 
    54080 > select add #2.19
    54081 
    54082 8 models selected 
    54083 
    54084 > select add #2.38
    54085 
    54086 9 models selected 
    54087 
    54088 > select add #2.232
    54089 
    54090 10 models selected 
    54091 
    54092 > select add #2.209
    54093 
    54094 11 models selected 
    54095 
    54096 > select add #2.17
    54097 
    54098 12 models selected 
    54099 
    54100 > select add #2.65
    54101 
    54102 13 models selected 
    54103 
    54104 > select add #2.58
    54105 
    54106 14 models selected 
    54107 
    54108 > select add #2.21
    54109 
    54110 15 models selected 
    54111 
    54112 > select add #2.32
    54113 
    54114 16 models selected 
    54115 
    54116 > select add #2.95
    54117 
    54118 17 models selected 
    54119 
    54120 > select add #2.336
    54121 
    54122 18 models selected 
    54123 
    54124 > select add #2.29
    54125 
    54126 19 models selected 
    54127 
    54128 > select add #2.60
    54129 
    54130 20 models selected 
    54131 
    54132 > select add #2.51
    54133 
    54134 21 models selected 
    54135 
    54136 > select add #2.34
    54137 
    54138 22 models selected 
    54139 
    54140 > select add #2.127
    54141 
    54142 23 models selected 
    54143 
    54144 > select add #2.472
    54145 
    54146 24 models selected 
    54147 
    54148 > select add #2.4
    54149 
    54150 25 models selected 
    54151 
    54152 > select add #2.79
    54153 
    54154 26 models selected 
    54155 
    54156 > select add #2.461
    54157 
    54158 27 models selected 
    54159 
    54160 > select add #2.235
    54161 
    54162 28 models selected 
    54163 
    54164 > select add #2.216
    54165 
    54166 29 models selected 
    54167 
    54168 > select add #2.693
    54169 
    54170 30 models selected 
    54171 
    54172 > select add #2.52
    54173 
    54174 31 models selected 
    54175 
    54176 > select add #2.25
    54177 
    54178 32 models selected 
    54179 Grouped 32 regions 
    54180 
    54181 > select add #2.121
    54182 
    54183 2 models selected 
    54184 
    54185 > select add #2.663
    54186 
    54187 3 models selected 
    54188 
    54189 > select add #2.244
    54190 
    54191 4 models selected 
    54192 
    54193 > select add #2.185
    54194 
    54195 5 models selected 
    54196 
    54197 > select subtract #2.185
    54198 
    54199 4 models selected 
    54200 
    54201 > select add #2.68
    54202 
    54203 5 models selected 
    54204 Grouped 5 regions 
    54205 
    54206 > select add #2.185
    54207 
    54208 2 models selected 
    54209 
    54210 > select add #2.379
    54211 
    54212 3 models selected 
    54213 
    54214 > select add #2.157
    54215 
    54216 4 models selected 
    54217 
    54218 > select add #2.128
    54219 
    54220 5 models selected 
    54221 
    54222 > select add #2.901
    54223 
    54224 6 models selected 
    54225 
    54226 > select add #2.439
    54227 
    54228 7 models selected 
    54229 
    54230 > select add #2.1219
    54231 
    54232 8 models selected 
    54233 
    54234 > select subtract #2.1219
    54235 
    54236 7 models selected 
    54237 
    54238 > select add #2.137
    54239 
    54240 8 models selected 
    54241 
    54242 > select add #2.226
    54243 
    54244 9 models selected 
    54245 Segmenting L0.12-Wild-type_EMD_45507.mrc, density threshold 0.010668 
    54246 Showing 1281 region surfaces 
    54247 12116 watershed regions, grouped to 1281 regions 
    54248 Showing L0.12-Wild-type_EMD_45507.seg - 1281 regions, 1281 surfaces 
    54249 
    54250 > select #2.29
    54251 
    54252 1 model selected 
    54253 
    54254 > select add #2.336
    54255 
    54256 2 models selected 
    54257 
    54258 > select add #2.95
    54259 
    54260 3 models selected 
    54261 
    54262 > select add #2.32
    54263 
    54264 4 models selected 
    54265 
    54266 > select add #2.21
    54267 
    54268 5 models selected 
    54269 
    54270 > select add #2.58
    54271 
    54272 6 models selected 
    54273 
    54274 > select add #2.65
    54275 
    54276 7 models selected 
    54277 
    54278 > select add #2.17
    54279 
    54280 8 models selected 
    54281 
    54282 > select add #2.209
    54283 
    54284 9 models selected 
    54285 
    54286 > select add #2.232
    54287 
    54288 10 models selected 
    54289 
    54290 > select add #2.38
    54291 
    54292 11 models selected 
    54293 
    54294 > select add #2.19
    54295 
    54296 12 models selected 
    54297 
    54298 > select add #2.88
    54299 
    54300 13 models selected 
    54301 
    54302 > select add #2.744
    54303 
    54304 14 models selected 
    54305 
    54306 > select add #2.42
    54307 
    54308 15 models selected 
    54309 
    54310 > select add #2.61
    54311 
    54312 16 models selected 
    54313 
    54314 > select add #2.16
    54315 
    54316 17 models selected 
    54317 
    54318 > select add #2.90
    54319 
    54320 18 models selected 
    54321 
    54322 > select add #2.80
    54323 
    54324 19 models selected 
    54325 
    54326 The cached device pixel ratio value was stale on window expose. Please file a
    54327 QTBUG which explains how to reproduce. 
    54328 
    54329 > select add #2.240
    54330 
    54331 20 models selected 
    54332 
    54333 > select add #2.168
    54334 
    54335 21 models selected 
    54336 
    54337 > select add #2.377
    54338 
    54339 22 models selected 
    54340 
    54341 > select add #2.137
    54342 
    54343 23 models selected 
    54344 
    54345 > select add #2.226
    54346 
    54347 24 models selected 
    54348 
    54349 > select add #2.128
    54350 
    54351 25 models selected 
    54352 
    54353 > select add #2.439
    54354 
    54355 26 models selected 
    54356 
    54357 > select add #2.157
    54358 
    54359 27 models selected 
    54360 
    54361 > select add #2.68
    54362 
    54363 28 models selected 
    54364 
    54365 > select add #2.185
    54366 
    54367 29 models selected 
    54368 
    54369 > select subtract #2.185
    54370 
    54371 28 models selected 
    54372 
    54373 > select add #2.60
    54374 
    54375 29 models selected 
    54376 
    54377 > select add #2.185
    54378 
    54379 30 models selected 
    54380 
    54381 > select add #2.379
    54382 
    54383 31 models selected 
    54384 
    54385 > select add #2.51
    54386 
    54387 32 models selected 
    54388 
    54389 > select add #2.127
    54390 
    54391 33 models selected 
    54392 
    54393 > select add #2.472
    54394 
    54395 34 models selected 
    54396 
    54397 > select add #2.34
    54398 
    54399 35 models selected 
    54400 
    54401 > select add #2.121
    54402 
    54403 36 models selected 
    54404 
    54405 > select add #2.4
    54406 
    54407 37 models selected 
    54408 
    54409 > select add #2.79
    54410 
    54411 38 models selected 
    54412 
    54413 > select add #2.216
    54414 
    54415 39 models selected 
    54416 
    54417 > select add #2.235
    54418 
    54419 40 models selected 
    54420 
    54421 > select subtract #2.216
    54422 
    54423 39 models selected 
    54424 
    54425 > select add #2.216
    54426 
    54427 40 models selected 
    54428 
    54429 > select add #2.52
    54430 
    54431 41 models selected 
    54432 
    54433 > select add #2.25
    54434 
    54435 42 models selected 
    54436 
    54437 > select add #2.148
    54438 
    54439 43 models selected 
    54440 
    54441 > select add #2.18
    54442 
    54443 44 models selected 
    54444 
    54445 > select add #2.227
    54446 
    54447 45 models selected 
    54448 
    54449 > select add #2.73
    54450 
    54451 46 models selected 
    54452 
    54453 > select add #2.37
    54454 
    54455 47 models selected 
    54456 
    54457 > select add #2.20
    54458 
    54459 48 models selected 
    54460 Grouped 48 regions 
    54461 
    54462 > hide #!1 models
    54463 
    54464 > select add #2.143
    54465 
    54466 2 models selected 
    54467 
    54468 > select add #2.257
    54469 
    54470 3 models selected 
    54471 
    54472 > select add #2.693
    54473 
    54474 4 models selected 
    54475 
    54476 > select add #2.141
    54477 
    54478 5 models selected 
    54479 
    54480 > select add #2.49
    54481 
    54482 6 models selected 
    54483 
    54484 > select add #2.75
    54485 
    54486 7 models selected 
    54487 
    54488 > select add #2.123
    54489 
    54490 8 models selected 
    54491 
    54492 > select add #2.205
    54493 
    54494 9 models selected 
    54495 
    54496 > select add #2.173
    54497 
    54498 10 models selected 
    54499 
    54500 > select add #2.317
    54501 
    54502 11 models selected 
    54503 
    54504 > select add #2.134
    54505 
    54506 12 models selected 
    54507 
    54508 > select add #2.208
    54509 
    54510 13 models selected 
    54511 
    54512 > select add #2.461
    54513 
    54514 14 models selected 
    54515 
    54516 > select add #2.178
    54517 
    54518 15 models selected 
    54519 
    54520 > select add #2.119
    54521 
    54522 16 models selected 
    54523 
    54524 > select add #2.663
    54525 
    54526 17 models selected 
    54527 
    54528 > select add #2.244
    54529 
    54530 18 models selected 
    54531 
    54532 > select add #2.188
    54533 
    54534 19 models selected 
    54535 
    54536 > select add #2.159
    54537 
    54538 20 models selected 
    54539 
    54540 > select add #2.115
    54541 
    54542 21 models selected 
    54543 
    54544 > select add #2.901
    54545 
    54546 22 models selected 
    54547 
    54548 > select add #2.196
    54549 
    54550 23 models selected 
    54551 
    54552 > select add #2.217
    54553 
    54554 24 models selected 
    54555 
    54556 > select add #2.432
    54557 
    54558 25 models selected 
    54559 
    54560 > select add #2.243
    54561 
    54562 26 models selected 
    54563 
    54564 > select add #2.189
    54565 
    54566 27 models selected 
    54567 
    54568 > select add #2.236
    54569 
    54570 28 models selected 
    54571 
    54572 > select add #2.234
    54573 
    54574 29 models selected 
    54575 
    54576 > select add #2.200
    54577 
    54578 30 models selected 
    54579 
    54580 > select add #2.433
    54581 
    54582 31 models selected 
    54583 
    54584 > select add #2.266
    54585 
    54586 32 models selected 
    54587 
    54588 > select add #2.851
    54589 
    54590 33 models selected 
    54591 
    54592 > select add #2.655
    54593 
    54594 34 models selected 
    54595 
    54596 > select add #2.455
    54597 
    54598 35 models selected 
    54599 
    54600 > select add #2.353
    54601 
    54602 36 models selected 
    54603 
    54604 > select add #2.402
    54605 
    54606 37 models selected 
    54607 
    54608 > select add #2.506
    54609 
    54610 38 models selected 
    54611 
    54612 > select add #2.281
    54613 
    54614 39 models selected 
    54615 
    54616 > select add #2.401
    54617 
    54618 40 models selected 
    54619 
    54620 > select add #2.467
    54621 
    54622 41 models selected 
    54623 
    54624 > select add #2.565
    54625 
    54626 42 models selected 
    54627 
    54628 > select add #2.300
    54629 
    54630 43 models selected 
    54631 
    54632 > select add #2.420
    54633 
    54634 44 models selected 
    54635 
    54636 > select add #2.423
    54637 
    54638 45 models selected 
    54639 Grouped 45 regions 
    54640 
    54641 The cached device pixel ratio value was stale on window expose. Please file a
    54642 QTBUG which explains how to reproduce. 
    54643 
    54644 > select #2.81
    54645 
    54646 1 model selected 
    54647 
    54648 > select add #2.35
    54649 
    54650 2 models selected 
    54651 Ungrouped to 12 regions 
    54652 Ungrouped to 27 regions 
    54653 Ungrouped to 21 regions 
    54654 
    54655 > select #2.19
    54656 
    54657 1 model selected 
    54658 Ungrouped to 3 regions 
    54659 Ungrouped to 0 regions 
    54660 
    54661 > select #2.65
    54662 
    54663 1 model selected 
    54664 
    54665 > select add #2.42
    54666 
    54667 2 models selected 
    54668 
    54669 > select add #2.51
    54670 
    54671 3 models selected 
    54672 Grouped 3 regions 
    54673 
    54674 > select add #2.4
    54675 
    54676 2 models selected 
    54677 Grouped 2 regions 
    54678 
    54679 > select #2.39
    54680 
    54681 1 model selected 
    54682 
    54683 > select add #2.197
    54684 
    54685 2 models selected 
    54686 Ungrouped to 6 regions 
    54687 Ungrouped to 15 regions 
    54688 Ungrouped to 24 regions 
    54689 Ungrouped to 8 regions 
    54690 Ungrouped to 0 regions 
    54691 
    54692 > select #2.4
    54693 
    54694 1 model selected 
    54695 
    54696 > select #2.234
    54697 
    54698 1 model selected 
    54699 
    54700 > select add #2.4
    54701 
    54702 2 models selected 
    54703 Grouped 2 regions 
    54704 
    54705 > select #2.125
    54706 
    54707 1 model selected 
    54708 
    54709 > select add #2.99
    54710 
    54711 2 models selected 
    54712 Ungrouped to 5 regions 
    54713 Ungrouped to 13 regions 
    54714 Ungrouped to 21 regions 
    54715 Ungrouped to 7 regions 
    54716 Ungrouped to 0 regions 
    54717 
    54718 > select #2.506
    54719 
    54720 1 model selected 
    54721 
    54722 > select add #2.467
    54723 
    54724 2 models selected 
    54725 Grouped 2 regions 
    54726 
    54727 > select add #2.4
    54728 
    54729 2 models selected 
    54730 Grouped 2 regions 
    54731 
    54732 > select #2.67
    54733 
    54734 1 model selected 
    54735 Ungrouped to 5 regions 
    54736 Ungrouped to 13 regions 
    54737 Ungrouped to 11 regions 
    54738 Ungrouped to 8 regions 
    54739 Ungrouped to 0 regions 
    54740 Ungrouped to 1615 regions 
    54741 Ungrouped to 3322 regions 
    54742 Ungrouped to 6024 regions 
    54743 
    54744 > select #2.655
    54745 
    54746 1 model selected 
    54747 
    54748 > select #2.1312
    54749 
    54750 1 model selected 
    54751 
    54752 > select add #2.1311
    54753 
    54754 2 models selected 
    54755 Grouped 2 regions 
    54756 
    54757 > select add #2.4
    54758 
    54759 2 models selected 
    54760 
    54761 > select add #2.9151
    54762 
    54763 3 models selected 
    54764 
    54765 > select add #2.9152
    54766 
    54767 4 models selected 
    54768 Grouped 4 regions 
    54769 
    54770 > select #2.3638
    54771 
    54772 1 model selected 
    54773 
    54774 > select add #2.5286
    54775 
    54776 2 models selected 
    54777 
    54778 > select add #2.3
    54779 
    54780 3 models selected 
    54781 
    54782 > select add #2.5194
    54783 
    54784 4 models selected 
    54785 
    54786 > select add #2.5977
    54787 
    54788 5 models selected 
    54789 
    54790 > select add #2.5399
    54791 
    54792 6 models selected 
    54793 
    54794 > select subtract #2.5399
    54795 
    54796 5 models selected 
    54797 
    54798 > select add #2.714
    54799 
    54800 6 models selected 
    54801 
    54802 > select add #2.5189
    54803 
    54804 7 models selected 
    54805 
    54806 > select add #2.5121
    54807 
    54808 8 models selected 
    54809 
    54810 > select add #2.4974
    54811 
    54812 9 models selected 
    54813 
    54814 > select add #2.3725
    54815 
    54816 10 models selected 
    54817 
    54818 > select add #2.8295
    54819 
    54820 11 models selected 
    54821 
    54822 > select subtract #2.3638
    54823 
    54824 10 models selected 
    54825 
    54826 > select subtract #2.5286
    54827 
    54828 9 models selected 
    54829 
    54830 > select add #2.5150
    54831 
    54832 10 models selected 
    54833 
    54834 > select add #2.5498
    54835 
    54836 11 models selected 
    54837 
    54838 > select add #2.5399
    54839 
    54840 12 models selected 
    54841 
    54842 > select add #2.709
    54843 
    54844 13 models selected 
    54845 
    54846 > select add #2.8881
    54847 
    54848 14 models selected 
    54849 
    54850 > select subtract #2.8881
    54851 
    54852 13 models selected 
    54853 
    54854 > select add #2.3638
    54855 
    54856 14 models selected 
    54857 
    54858 > select add #2.3910
    54859 
    54860 15 models selected 
    54861 
    54862 > select add #2.8223
    54863 
    54864 16 models selected 
    54865 
    54866 > select add #2.402
    54867 
    54868 17 models selected 
    54869 
    54870 > select add #2.5100
    54871 
    54872 18 models selected 
    54873 Grouped 18 regions 
    54874 Opened L0.12-Wild-type_EMD_45507_imasked as #3, grid size 250,250,250, pixel
    54875 4.3, shown at step 1, values float32 
    54876 
    54877 The cached device pixel ratio value was stale on window expose. Please file a
    54878 QTBUG which explains how to reproduce. 
    54879 
    54880 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/OM.mrc models #3
    54881 
    54882 Opened L0.12-Wild-type_EMD_45507_imasked as #4, grid size 250,250,250, pixel
    54883 4.3, shown at step 1, values float32 
    54884 
    54885 The cached device pixel ratio value was stale on window expose. Please file a
    54886 QTBUG which explains how to reproduce. 
    54887 
    54888 Segmenting L0.12-Wild-type_EMD_45507_imasked, density threshold 0.010668 
    54889 Showing 1191 region surfaces 
    54890 11278 watershed regions, grouped to 1191 regions 
    54891 Showing L0.seg - 1191 regions, 1191 surfaces 
    54892 
    54893 > hide #!3 models
    54894 
    54895 > hide #!4 models
    54896 
    54897 > select #2.25
    54898 
    54899 1 model selected 
    54900 
    54901 > select add #2.40
    54902 
    54903 2 models selected 
    54904 
    54905 > select add #2.66
    54906 
    54907 3 models selected 
    54908 
    54909 > select add #2.251
    54910 
    54911 4 models selected 
    54912 
    54913 > select add #2.880
    54914 
    54915 5 models selected 
    54916 
    54917 > select add #2.921
    54918 
    54919 6 models selected 
    54920 
    54921 > select add #2.565
    54922 
    54923 7 models selected 
    54924 
    54925 > select add #2.364
    54926 
    54927 8 models selected 
    54928 
    54929 > select add #2.583
    54930 
    54931 9 models selected 
    54932 
    54933 > select add #2.941
    54934 
    54935 10 models selected 
    54936 
    54937 > select add #2.27
    54938 
    54939 11 models selected 
    54940 
    54941 > select add #2.105
    54942 
    54943 12 models selected 
    54944 
    54945 > select add #2.107
    54946 
    54947 13 models selected 
    54948 Grouped 13 regions 
    54949 
    54950 > select add #2.47
    54951 
    54952 2 models selected 
    54953 
    54954 > select add #2.43
    54955 
    54956 3 models selected 
    54957 
    54958 > select add #2.52
    54959 
    54960 4 models selected 
    54961 
    54962 > select add #2.71
    54963 
    54964 5 models selected 
    54965 
    54966 > select subtract #2.52
    54967 
    54968 4 models selected 
    54969 
    54970 > select add #2.52
    54971 
    54972 5 models selected 
    54973 
    54974 > select add #2.41
    54975 
    54976 6 models selected 
    54977 
    54978 > select add #2.134
    54979 
    54980 7 models selected 
    54981 
    54982 > select add #2.17
    54983 
    54984 8 models selected 
    54985 Grouped 8 regions 
    54986 
    54987 > select add #2.166
    54988 
    54989 2 models selected 
    54990 
    54991 > select add #2.898
    54992 
    54993 3 models selected 
    54994 
    54995 > select add #2.330
    54996 
    54997 4 models selected 
    54998 
    54999 > select add #2.530
    55000 
    55001 5 models selected 
    55002 
    55003 > select add #2.506
    55004 
    55005 6 models selected 
    55006 
    55007 > select add #2.553
    55008 
    55009 7 models selected 
    55010 
    55011 > select add #2.905
    55012 
    55013 8 models selected 
    55014 
    55015 > select add #2.519
    55016 
    55017 9 models selected 
    55018 
    55019 > select add #2.526
    55020 
    55021 10 models selected 
    55022 
    55023 > select add #2.537
    55024 
    55025 11 models selected 
    55026 
    55027 > select add #2.328
    55028 
    55029 12 models selected 
    55030 
    55031 > select add #2.888
    55032 
    55033 13 models selected 
    55034 
    55035 > select add #2.271
    55036 
    55037 14 models selected 
    55038 
    55039 > select add #2.541
    55040 
    55041 15 models selected 
    55042 
    55043 > select add #2.883
    55044 
    55045 16 models selected 
    55046 
    55047 > select add #2.49
    55048 
    55049 17 models selected 
    55050 
    55051 > select add #2.42
    55052 
    55053 18 models selected 
    55054 
    55055 > select subtract #2.42
    55056 
    55057 17 models selected 
    55058 
    55059 > select add #2.42
    55060 
    55061 18 models selected 
    55062 
    55063 > select add #2.54
    55064 
    55065 19 models selected 
    55066 
    55067 > select add #2.34
    55068 
    55069 20 models selected 
    55070 
    55071 > select add #2.20
    55072 
    55073 21 models selected 
    55074 
    55075 > select add #2.24
    55076 
    55077 22 models selected 
    55078 
    55079 > select add #2.119
    55080 
    55081 23 models selected 
    55082 
    55083 > select add #2.21
    55084 
    55085 24 models selected 
    55086 
    55087 > select add #2.116
    55088 
    55089 25 models selected 
    55090 
    55091 > select add #2.50
    55092 
    55093 26 models selected 
    55094 
    55095 > select add #2.45
    55096 
    55097 27 models selected 
    55098 
    55099 > select add #2.138
    55100 
    55101 28 models selected 
    55102 
    55103 > select add #2.305
    55104 
    55105 29 models selected 
    55106 
    55107 > select add #2.193
    55108 
    55109 30 models selected 
    55110 
    55111 > select add #2.33
    55112 
    55113 31 models selected 
    55114 
    55115 > select add #2.16
    55116 
    55117 32 models selected 
    55118 
    55119 > select add #2.151
    55120 
    55121 33 models selected 
    55122 
    55123 > select add #2.135
    55124 
    55125 34 models selected 
    55126 
    55127 > select add #2.23
    55128 
    55129 35 models selected 
    55130 
    55131 > select add #2.46
    55132 
    55133 36 models selected 
    55134 
    55135 > select add #2.39
    55136 
    55137 37 models selected 
    55138 
    55139 > select add #2.53
    55140 
    55141 38 models selected 
    55142 
    55143 > select add #2.148
    55144 
    55145 39 models selected 
    55146 
    55147 > select add #2.560
    55148 
    55149 40 models selected 
    55150 
    55151 > select add #2.789
    55152 
    55153 41 models selected 
    55154 
    55155 > select add #2.600
    55156 
    55157 42 models selected 
    55158 
    55159 > select add #2.809
    55160 
    55161 43 models selected 
    55162 
    55163 > select add #2.836
    55164 
    55165 44 models selected 
    55166 
    55167 > select add #2.415
    55168 
    55169 45 models selected 
    55170 
    55171 > select add #2.597
    55172 
    55173 46 models selected 
    55174 
    55175 > select add #2.807
    55176 
    55177 47 models selected 
    55178 
    55179 > select add #2.544
    55180 
    55181 48 models selected 
    55182 
    55183 > select add #2.656
    55184 
    55185 49 models selected 
    55186 
    55187 > select add #2.804
    55188 
    55189 50 models selected 
    55190 
    55191 > select add #2.606
    55192 
    55193 51 models selected 
    55194 
    55195 > select add #2.796
    55196 
    55197 52 models selected 
    55198 
    55199 > select add #2.912
    55200 
    55201 53 models selected 
    55202 
    55203 > select add #2.551
    55204 
    55205 54 models selected 
    55206 
    55207 > select add #2.621
    55208 
    55209 55 models selected 
    55210 
    55211 > select add #2.756
    55212 
    55213 56 models selected 
    55214 
    55215 > select add #2.339
    55216 
    55217 57 models selected 
    55218 
    55219 > select add #2.548
    55220 
    55221 58 models selected 
    55222 
    55223 > select add #2.517
    55224 
    55225 59 models selected 
    55226 
    55227 > select add #2.778
    55228 
    55229 60 models selected 
    55230 
    55231 > select add #2.542
    55232 
    55233 61 models selected 
    55234 
    55235 > select add #2.287
    55236 
    55237 62 models selected 
    55238 
    55239 > select add #2.211
    55240 
    55241 63 models selected 
    55242 
    55243 > select add #2.244
    55244 
    55245 64 models selected 
    55246 
    55247 > select add #2.379
    55248 
    55249 65 models selected 
    55250 
    55251 > select add #2.308
    55252 
    55253 66 models selected 
    55254 
    55255 > select add #2.291
    55256 
    55257 67 models selected 
    55258 
    55259 > select add #2.697
    55260 
    55261 68 models selected 
    55262 
    55263 > select add #2.277
    55264 
    55265 69 models selected 
    55266 
    55267 > select add #2.738
    55268 
    55269 70 models selected 
    55270 
    55271 > select add #2.378
    55272 
    55273 71 models selected 
    55274 
    55275 > select add #2.397
    55276 
    55277 72 models selected 
    55278 
    55279 > select add #2.712
    55280 
    55281 73 models selected 
    55282 
    55283 > select add #2.505
    55284 
    55285 74 models selected 
    55286 
    55287 > select add #2.665
    55288 
    55289 75 models selected 
    55290 
    55291 > select add #2.767
    55292 
    55293 76 models selected 
    55294 
    55295 > select add #2.424
    55296 
    55297 77 models selected 
    55298 
    55299 > select add #2.803
    55300 
    55301 78 models selected 
    55302 
    55303 > select add #2.609
    55304 
    55305 79 models selected 
    55306 
    55307 > select add #2.247
    55308 
    55309 80 models selected 
    55310 
    55311 > select add #2.728
    55312 
    55313 81 models selected 
    55314 
    55315 > select add #2.441
    55316 
    55317 82 models selected 
    55318 
    55319 > select add #2.270
    55320 
    55321 83 models selected 
    55322 
    55323 > select add #2.275
    55324 
    55325 84 models selected 
    55326 
    55327 > select add #2.215
    55328 
    55329 85 models selected 
    55330 
    55331 > select add #2.693
    55332 
    55333 86 models selected 
    55334 
    55335 > select add #2.392
    55336 
    55337 87 models selected 
    55338 
    55339 > select add #2.635
    55340 
    55341 88 models selected 
    55342 
    55343 > select add #2.800
    55344 
    55345 89 models selected 
    55346 
    55347 > select add #2.401
    55348 
    55349 90 models selected 
    55350 
    55351 > select add #2.706
    55352 
    55353 91 models selected 
    55354 
    55355 > select add #2.303
    55356 
    55357 92 models selected 
    55358 
    55359 > select add #2.189
    55360 
    55361 93 models selected 
    55362 
    55363 > select add #2.430
    55364 
    55365 94 models selected 
    55366 
    55367 > select add #2.731
    55368 
    55369 95 models selected 
    55370 
    55371 > select add #2.374
    55372 
    55373 96 models selected 
    55374 
    55375 > select add #2.726
    55376 
    55377 97 models selected 
    55378 
    55379 > select add #2.715
    55380 
    55381 98 models selected 
    55382 
    55383 > select add #2.306
    55384 
    55385 99 models selected 
    55386 
    55387 > select add #2.224
    55388 
    55389 100 models selected 
    55390 
    55391 > select subtract #2.224
    55392 
    55393 99 models selected 
    55394 
    55395 > select add #2.224
    55396 
    55397 100 models selected 
    55398 
    55399 > select add #2.213
    55400 
    55401 101 models selected 
    55402 
    55403 > select add #2.680
    55404 
    55405 102 models selected 
    55406 
    55407 > select add #2.533
    55408 
    55409 103 models selected 
    55410 
    55411 > select add #2.249
    55412 
    55413 104 models selected 
    55414 
    55415 > select add #2.310
    55416 
    55417 105 models selected 
    55418 
    55419 > select add #2.443
    55420 
    55421 106 models selected 
    55422 
    55423 > select add #2.552
    55424 
    55425 107 models selected 
    55426 
    55427 > select add #2.237
    55428 
    55429 108 models selected 
    55430 
    55431 > select add #2.214
    55432 
    55433 109 models selected 
    55434 
    55435 > select add #2.429
    55436 
    55437 110 models selected 
    55438 
    55439 > select add #2.676
    55440 
    55441 111 models selected 
    55442 
    55443 > select add #2.388
    55444 
    55445 112 models selected 
    55446 
    55447 > select add #2.901
    55448 
    55449 113 models selected 
    55450 
    55451 > select add #2.690
    55452 
    55453 114 models selected 
    55454 
    55455 > select add #2.256
    55456 
    55457 115 models selected 
    55458 
    55459 > select subtract #2.256
    55460 
    55461 114 models selected 
    55462 
    55463 > select add #2.256
    55464 
    55465 115 models selected 
    55466 
    55467 > select add #2.798
    55468 
    55469 116 models selected 
    55470 
    55471 > select add #2.521
    55472 
    55473 117 models selected 
    55474 
    55475 > select add #2.748
    55476 
    55477 118 models selected 
    55478 
    55479 > select add #2.217
    55480 
    55481 119 models selected 
    55482 
    55483 > select add #2.234
    55484 
    55485 120 models selected 
    55486 
    55487 > select add #2.437
    55488 
    55489 121 models selected 
    55490 
    55491 > select add #2.716
    55492 
    55493 122 models selected 
    55494 
    55495 > select add #2.525
    55496 
    55497 123 models selected 
    55498 
    55499 > select add #2.338
    55500 
    55501 124 models selected 
    55502 
    55503 > select add #2.599
    55504 
    55505 125 models selected 
    55506 
    55507 > select add #2.673
    55508 
    55509 126 models selected 
    55510 
    55511 > select add #2.141
    55512 
    55513 127 models selected 
    55514 
    55515 > select add #2.220
    55516 
    55517 128 models selected 
    55518 
    55519 > select add #2.875
    55520 
    55521 129 models selected 
    55522 
    55523 > select add #2.642
    55524 
    55525 130 models selected 
    55526 
    55527 > select add #2.702
    55528 
    55529 131 models selected 
    55530 
    55531 > select add #2.444
    55532 
    55533 132 models selected 
    55534 
    55535 > select add #2.805
    55536 
    55537 133 models selected 
    55538 
    55539 > select add #2.337
    55540 
    55541 134 models selected 
    55542 
    55543 > select add #2.529
    55544 
    55545 135 models selected 
    55546 
    55547 > select add #2.351
    55548 
    55549 136 models selected 
    55550 
    55551 > select subtract #2.351
    55552 
    55553 135 models selected 
    55554 
    55555 > select add #2.351
    55556 
    55557 136 models selected 
    55558 
    55559 > select add #2.520
    55560 
    55561 137 models selected 
    55562 
    55563 > select add #2.555
    55564 
    55565 138 models selected 
    55566 
    55567 > select add #2.260
    55568 
    55569 139 models selected 
    55570 
    55571 > select add #2.273
    55572 
    55573 140 models selected 
    55574 
    55575 > select add #2.297
    55576 
    55577 141 models selected 
    55578 
    55579 > select add #2.762
    55580 
    55581 142 models selected 
    55582 
    55583 > select add #2.813
    55584 
    55585 143 models selected 
    55586 
    55587 > select add #2.408
    55588 
    55589 144 models selected 
    55590 
    55591 > select add #2.669
    55592 
    55593 145 models selected 
    55594 
    55595 > select add #2.696
    55596 
    55597 146 models selected 
    55598 
    55599 > select add #2.452
    55600 
    55601 147 models selected 
    55602 
    55603 > select subtract #2.452
    55604 
    55605 146 models selected 
    55606 
    55607 > select add #2.299
    55608 
    55609 147 models selected 
    55610 
    55611 > select add #2.452
    55612 
    55613 148 models selected 
    55614 
    55615 > select add #2.546
    55616 
    55617 149 models selected 
    55618 
    55619 > select add #2.188
    55620 
    55621 150 models selected 
    55622 
    55623 > select add #2.231
    55624 
    55625 151 models selected 
    55626 
    55627 > select add #2.730
    55628 
    55629 152 models selected 
    55630 
    55631 > select add #2.607
    55632 
    55633 153 models selected 
    55634 
    55635 > select add #2.373
    55636 
    55637 154 models selected 
    55638 
    55639 > select add #2.512
    55640 
    55641 155 models selected 
    55642 
    55643 > select add #2.516
    55644 
    55645 156 models selected 
    55646 
    55647 > select add #2.879
    55648 
    55649 157 models selected 
    55650 
    55651 > select add #2.679
    55652 
    55653 158 models selected 
    55654 
    55655 > select add #2.341
    55656 
    55657 159 models selected 
    55658 
    55659 > select add #2.399
    55660 
    55661 160 models selected 
    55662 
    55663 > select add #2.278
    55664 
    55665 161 models selected 
    55666 
    55667 > select add #2.112
    55668 
    55669 162 models selected 
    55670 
    55671 > select add #2.703
    55672 
    55673 163 models selected 
    55674 
    55675 > select add #2.395
    55676 
    55677 164 models selected 
    55678 
    55679 > select add #2.645
    55680 
    55681 165 models selected 
    55682 
    55683 > select add #2.409
    55684 
    55685 166 models selected 
    55686 
    55687 > select add #2.396
    55688 
    55689 167 models selected 
    55690 
    55691 > select add #2.681
    55692 
    55693 168 models selected 
    55694 
    55695 > select add #2.754
    55696 
    55697 169 models selected 
    55698 
    55699 > select add #2.788
    55700 
    55701 170 models selected 
    55702 
    55703 > select add #2.601
    55704 
    55705 171 models selected 
    55706 
    55707 > select add #2.769
    55708 
    55709 172 models selected 
    55710 
    55711 > select subtract #2.112
    55712 
    55713 171 models selected 
    55714 Grouped 171 regions 
    55715 
    55716 > select clear
    55717 
    55718 > select #2.1060
    55719 
    55720 1 model selected 
    55721 
    55722 > select #2.1060
    55723 
    55724 1 model selected 
    55725 
    55726 > select #2.16
    55727 
    55728 1 model selected 
    55729 
    55730 > ui tool show "Side View"
    55731 
    55732 Opened L0_imasked as #5, grid size 250,250,250, pixel 4.3, shown at step 1,
    55733 values float32 
    55734 
    55735 The cached device pixel ratio value was stale on window expose. Please file a
    55736 QTBUG which explains how to reproduce. 
    55737 
    55738 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Basal_disk.mrc models
    55739 > #5
    55740 
    55741 Opened L0_imasked as #6, grid size 250,250,250, pixel 4.3, shown at step 1,
    55742 values float32 
    55743 Segmenting L0_imasked, density threshold 0.010668 
    55744 Showing 1000 region surfaces 
    55745 9960 watershed regions, grouped to 1000 regions 
    55746 Showing L0_imasked.seg - 1000 regions, 1000 surfaces 
    55747 
    55748 > hide #!5 models
    55749 
    55750 > hide #!6 models
    55751 
    55752 > select #2.537
    55753 
    55754 1 model selected 
    55755 
    55756 > select add #2.563
    55757 
    55758 2 models selected 
    55759 
    55760 > select add #2.577
    55761 
    55762 3 models selected 
    55763 
    55764 > select add #2.588
    55765 
    55766 4 models selected 
    55767 
    55768 > select add #2.484
    55769 
    55770 5 models selected 
    55771 
    55772 > select add #2.468
    55773 
    55774 6 models selected 
    55775 
    55776 > select add #2.476
    55777 
    55778 7 models selected 
    55779 
    55780 > select add #2.467
    55781 
    55782 8 models selected 
    55783 
    55784 > select add #2.490
    55785 
    55786 9 models selected 
    55787 
    55788 > select add #2.559
    55789 
    55790 10 models selected 
    55791 
    55792 > select add #2.592
    55793 
    55794 11 models selected 
    55795 
    55796 > select add #2.471
    55797 
    55798 12 models selected 
    55799 
    55800 > select add #2.568
    55801 
    55802 13 models selected 
    55803 
    55804 > select add #2.500
    55805 
    55806 14 models selected 
    55807 
    55808 > select add #2.469
    55809 
    55810 15 models selected 
    55811 
    55812 > select add #2.239
    55813 
    55814 16 models selected 
    55815 
    55816 > select add #2.451
    55817 
    55818 17 models selected 
    55819 
    55820 > select add #2.480
    55821 
    55822 18 models selected 
    55823 
    55824 > select add #2.582
    55825 
    55826 19 models selected 
    55827 
    55828 > select add #2.692
    55829 
    55830 20 models selected 
    55831 
    55832 > select add #2.591
    55833 
    55834 21 models selected 
    55835 
    55836 > select add #2.474
    55837 
    55838 22 models selected 
    55839 
    55840 > select add #2.585
    55841 
    55842 23 models selected 
    55843 
    55844 > select add #2.556
    55845 
    55846 24 models selected 
    55847 
    55848 > select add #2.355
    55849 
    55850 25 models selected 
    55851 
    55852 > select add #2.574
    55853 
    55854 26 models selected 
    55855 
    55856 > select add #2.499
    55857 
    55858 27 models selected 
    55859 
    55860 > select add #2.461
    55861 
    55862 28 models selected 
    55863 
    55864 > select add #2.584
    55865 
    55866 29 models selected 
    55867 
    55868 > select add #2.570
    55869 
    55870 30 models selected 
    55871 
    55872 > select add #2.496
    55873 
    55874 31 models selected 
    55875 
    55876 > select add #2.320
    55877 
    55878 32 models selected 
    55879 Grouped 32 regions 
    55880 
    55881 > select clear
    55882 
    55883 > select #2.865
    55884 
    55885 1 model selected 
    55886 
    55887 > select add #2.820
    55888 
    55889 2 models selected 
    55890 Showing 969 region surfaces 
    55891 Grouped 2 regions 
    55892 
    55893 > select clear
    55894 
    55895 > select #2.239
    55896 
    55897 1 model selected 
    55898 Showing 968 region surfaces 
    55899 
    55900 > select clear
    55901 
    55902 > select #2.239
    55903 
    55904 1 model selected 
    55905 Opened L0_imasked_imasked as #7, grid size 250,250,250, pixel 4.3, shown at
    55906 step 1, values float32 
    55907 
    55908 The cached device pixel ratio value was stale on window expose. Please file a
    55909 QTBUG which explains how to reproduce. 
    55910 
    55911 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/LP-ring.mrc models #7
    55912 
    55913 Opened L0_imasked_imasked as #8, grid size 250,250,250, pixel 4.3, shown at
    55914 step 1, values float32 
    55915 Segmenting L0_imasked_imasked, density threshold 0.010668 
    55916 Showing 965 region surfaces 
    55917 9863 watershed regions, grouped to 965 regions 
    55918 Showing L0_imasked_imasked.seg - 965 regions, 965 surfaces 
    55919 
    55920 > hide #!7 models
    55921 
    55922 > hide #!8 models
    55923 
    55924 > close #7-8
    55925 
    55926 Segmenting L0_imasked, density threshold 0.010668 
    55927 Showing 1000 region surfaces 
    55928 9960 watershed regions, grouped to 1000 regions 
    55929 Showing L0_imasked.seg - 1000 regions, 1000 surfaces 
    55930 
    55931 > select #2.481
    55932 
    55933 1 model selected 
    55934 
    55935 > select add #2.239
    55936 
    55937 2 models selected 
    55938 
    55939 > select add #2.451
    55940 
    55941 3 models selected 
    55942 
    55943 > select add #2.691
    55944 
    55945 4 models selected 
    55946 
    55947 > select add #2.582
    55948 
    55949 5 models selected 
    55950 
    55951 > select add #2.585
    55952 
    55953 6 models selected 
    55954 
    55955 > select add #2.474
    55956 
    55957 7 models selected 
    55958 
    55959 > select add #2.591
    55960 
    55961 8 models selected 
    55962 
    55963 > select add #2.355
    55964 
    55965 9 models selected 
    55966 
    55967 > select add #2.499
    55968 
    55969 10 models selected 
    55970 
    55971 > select add #2.574
    55972 
    55973 11 models selected 
    55974 
    55975 > select subtract #2.574
    55976 
    55977 10 models selected 
    55978 
    55979 > select add #2.556
    55980 
    55981 11 models selected 
    55982 
    55983 > select add #2.574
    55984 
    55985 12 models selected 
    55986 
    55987 > select add #2.584
    55988 
    55989 13 models selected 
    55990 
    55991 > select add #2.461
    55992 
    55993 14 models selected 
    55994 
    55995 > select add #2.570
    55996 
    55997 15 models selected 
    55998 
    55999 > select add #2.496
    56000 
    56001 16 models selected 
    56002 
    56003 > select add #2.320
    56004 
    56005 17 models selected 
    56006 
    56007 > select add #2.469
    56008 
    56009 18 models selected 
    56010 
    56011 > select add #2.500
    56012 
    56013 19 models selected 
    56014 
    56015 > select add #2.568
    56016 
    56017 20 models selected 
    56018 
    56019 > select add #2.471
    56020 
    56021 21 models selected 
    56022 
    56023 > select add #2.592
    56024 
    56025 22 models selected 
    56026 
    56027 > select add #2.490
    56028 
    56029 23 models selected 
    56030 
    56031 > select add #2.559
    56032 
    56033 24 models selected 
    56034 
    56035 > select add #2.468
    56036 
    56037 25 models selected 
    56038 
    56039 > select add #2.537
    56040 
    56041 26 models selected 
    56042 
    56043 > select add #2.476
    56044 
    56045 27 models selected 
    56046 
    56047 > select add #2.467
    56048 
    56049 28 models selected 
    56050 
    56051 > select add #2.563
    56052 
    56053 29 models selected 
    56054 
    56055 > select add #2.577
    56056 
    56057 30 models selected 
    56058 
    56059 > select add #2.484
    56060 
    56061 31 models selected 
    56062 
    56063 > select add #2.588
    56064 
    56065 32 models selected 
    56066 Grouped 32 regions 
    56067 
    56068 > select add #2.869
    56069 
    56070 2 models selected 
    56071 
    56072 > select add #2.820
    56073 
    56074 3 models selected 
    56075 Grouped 3 regions 
    56076 
    56077 > select clear
    56078 
    56079 > select #2.239
    56080 
    56081 1 model selected 
    56082 Opened L0_imasked_imasked as #7, grid size 250,250,250, pixel 4.3, shown at
    56083 step 1, values float32 
    56084 
    56085 The cached device pixel ratio value was stale on window expose. Please file a
    56086 QTBUG which explains how to reproduce. 
    56087 
    56088 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/LP-ring.mrc models #7
    56089 
    56090 Opened L0_imasked_imasked as #8, grid size 250,250,250, pixel 4.3, shown at
    56091 step 1, values float32 
    56092 Segmenting L0_imasked_imasked, density threshold 0.010668 
    56093 Showing 965 region surfaces 
    56094 9861 watershed regions, grouped to 965 regions 
    56095 Showing L0_imasked_imasked.seg - 965 regions, 965 surfaces 
    56096 
    56097 > hide #!7 models
    56098 
    56099 > select #2.98
    56100 
    56101 1 model selected 
    56102 
    56103 > select add #2.209
    56104 
    56105 2 models selected 
    56106 
    56107 > select add #2.228
    56108 
    56109 3 models selected 
    56110 
    56111 > select add #2.110
    56112 
    56113 4 models selected 
    56114 
    56115 > select add #2.347
    56116 
    56117 5 models selected 
    56118 
    56119 > select add #2.241
    56120 
    56121 6 models selected 
    56122 
    56123 > select add #2.87
    56124 
    56125 7 models selected 
    56126 
    56127 > select add #2.351
    56128 
    56129 8 models selected 
    56130 
    56131 > select add #2.237
    56132 
    56133 9 models selected 
    56134 
    56135 > select add #2.166
    56136 
    56137 10 models selected 
    56138 
    56139 > select add #2.146
    56140 
    56141 11 models selected 
    56142 
    56143 > select add #2.231
    56144 
    56145 12 models selected 
    56146 
    56147 > select add #2.121
    56148 
    56149 13 models selected 
    56150 
    56151 > select add #2.447
    56152 
    56153 14 models selected 
    56154 
    56155 > select add #2.723
    56156 
    56157 15 models selected 
    56158 
    56159 > select add #2.226
    56160 
    56161 16 models selected 
    56162 
    56163 > select add #2.114
    56164 
    56165 17 models selected 
    56166 
    56167 > select add #2.360
    56168 
    56169 18 models selected 
    56170 
    56171 > select add #2.214
    56172 
    56173 19 models selected 
    56174 
    56175 > select add #2.99
    56176 
    56177 20 models selected 
    56178 
    56179 > select add #2.238
    56180 
    56181 21 models selected 
    56182 
    56183 > select add #2.442
    56184 
    56185 22 models selected 
    56186 
    56187 > select add #2.93
    56188 
    56189 23 models selected 
    56190 
    56191 > select add #2.344
    56192 
    56193 24 models selected 
    56194 
    56195 > select add #2.239
    56196 
    56197 25 models selected 
    56198 
    56199 > select add #2.96
    56200 
    56201 26 models selected 
    56202 
    56203 > select add #2.453
    56204 
    56205 27 models selected 
    56206 
    56207 > select add #2.717
    56208 
    56209 28 models selected 
    56210 
    56211 > select add #2.208
    56212 
    56213 29 models selected 
    56214 
    56215 > select add #2.112
    56216 
    56217 30 models selected 
    56218 
    56219 > select add #2.444
    56220 
    56221 31 models selected 
    56222 
    56223 > select add #2.113
    56224 
    56225 32 models selected 
    56226 
    56227 > select add #2.233
    56228 
    56229 33 models selected 
    56230 
    56231 > select add #2.357
    56232 
    56233 34 models selected 
    56234 
    56235 > select add #2.207
    56236 
    56237 35 models selected 
    56238 
    56239 > select add #2.167
    56240 
    56241 36 models selected 
    56242 
    56243 > select add #2.153
    56244 
    56245 37 models selected 
    56246 
    56247 > select add #2.119
    56248 
    56249 38 models selected 
    56250 
    56251 > select add #2.242
    56252 
    56253 39 models selected 
    56254 
    56255 > select add #2.369
    56256 
    56257 40 models selected 
    56258 
    56259 > select add #2.85
    56260 
    56261 41 models selected 
    56262 
    56263 > select add #2.212
    56264 
    56265 42 models selected 
    56266 
    56267 > select add #2.446
    56268 
    56269 43 models selected 
    56270 
    56271 > select add #2.227
    56272 
    56273 44 models selected 
    56274 
    56275 > select add #2.108
    56276 
    56277 45 models selected 
    56278 
    56279 > select add #2.346
    56280 
    56281 46 models selected 
    56282 
    56283 > select add #2.240
    56284 
    56285 47 models selected 
    56286 
    56287 > select add #2.210
    56288 
    56289 48 models selected 
    56290 
    56291 > select add #2.268
    56292 
    56293 49 models selected 
    56294 
    56295 > select add #2.353
    56296 
    56297 50 models selected 
    56298 
    56299 > select add #2.235
    56300 
    56301 51 models selected 
    56302 
    56303 > select add #2.714
    56304 
    56305 52 models selected 
    56306 
    56307 > select add #2.456
    56308 
    56309 53 models selected 
    56310 
    56311 > select add #2.117
    56312 
    56313 54 models selected 
    56314 
    56315 > select add #2.667
    56316 
    56317 55 models selected 
    56318 
    56319 > hide #!8 models
    56320 
    56321 > show #!8 models
    56322 
    56323 > select add #2.588
    56324 
    56325 56 models selected 
    56326 
    56327 > select add #2.637
    56328 
    56329 57 models selected 
    56330 
    56331 > select add #2.449
    56332 
    56333 58 models selected 
    56334 
    56335 > select add #2.639
    56336 
    56337 59 models selected 
    56338 
    56339 > select add #2.591
    56340 
    56341 60 models selected 
    56342 
    56343 > hide #!8 models
    56344 
    56345 > select #2.453
    56346 
    56347 1 model selected 
    56348 
    56349 > select add #2.344
    56350 
    56351 2 models selected 
    56352 
    56353 > select add #2.442
    56354 
    56355 3 models selected 
    56356 
    56357 > select add #2.360
    56358 
    56359 4 models selected 
    56360 
    56361 > select add #2.447
    56362 
    56363 5 models selected 
    56364 
    56365 > select add #2.146
    56366 
    56367 6 models selected 
    56368 
    56369 > select add #2.351
    56370 
    56371 7 models selected 
    56372 
    56373 > select add #2.347
    56374 
    56375 8 models selected 
    56376 
    56377 > select add #2.449
    56378 
    56379 9 models selected 
    56380 
    56381 > select add #2.456
    56382 
    56383 10 models selected 
    56384 
    56385 > select add #2.353
    56386 
    56387 11 models selected 
    56388 
    56389 > select add #2.446
    56390 
    56391 12 models selected 
    56392 
    56393 > select add #2.346
    56394 
    56395 13 models selected 
    56396 
    56397 > select add #2.369
    56398 
    56399 14 models selected 
    56400 
    56401 > select add #2.153
    56402 
    56403 15 models selected 
    56404 
    56405 > select add #2.357
    56406 
    56407 16 models selected 
    56408 
    56409 > select add #2.444
    56410 
    56411 17 models selected 
    56412 Ungrouped to 40 regions 
    56413 
    56414 > select #2.972
    56415 
    56416 1 model selected 
    56417 
    56418 > select add #2.988
    56419 
    56420 2 models selected 
    56421 
    56422 > select add #2.998
    56423 
    56424 3 models selected 
    56425 
    56426 > select add #2.1003
    56427 
    56428 4 models selected 
    56429 
    56430 > select #2.1003
    56431 
    56432 1 model selected 
    56433 Ungrouped to 2 regions 
    56434 
    56435 > select clear
    56436 
    56437 > select #2.146
    56438 
    56439 1 model selected 
    56440 
    56441 > select add #2.998
    56442 
    56443 2 models selected 
    56444 
    56445 > select add #2.988
    56446 
    56447 3 models selected 
    56448 
    56449 > select add #2.972
    56450 
    56451 4 models selected 
    56452 
    56453 > select add #2.966
    56454 
    56455 5 models selected 
    56456 
    56457 > select add #2.973
    56458 
    56459 6 models selected 
    56460 
    56461 > select add #2.991
    56462 
    56463 7 models selected 
    56464 
    56465 > select add #2.976
    56466 
    56467 8 models selected 
    56468 
    56469 > select add #2.999
    56470 
    56471 9 models selected 
    56472 
    56473 > select add #2.978
    56474 
    56475 10 models selected 
    56476 
    56477 > select add #2.969
    56478 
    56479 11 models selected 
    56480 
    56481 > select add #2.981
    56482 
    56483 12 models selected 
    56484 
    56485 > select add #2.985
    56486 
    56487 13 models selected 
    56488 
    56489 > select add #2.993
    56490 
    56491 14 models selected 
    56492 Grouped 14 regions 
    56493 
    56494 > select clear
    56495 
    56496 > select #2.989
    56497 
    56498 1 model selected 
    56499 
    56500 > select add #2.1005
    56501 
    56502 2 models selected 
    56503 
    56504 > select add #2.996
    56505 
    56506 3 models selected 
    56507 Ungrouped to 7 regions 
    56508 
    56509 > select clear
    56510 
    56511 > select #2.353
    56512 
    56513 1 model selected 
    56514 
    56515 > select add #2.344
    56516 
    56517 2 models selected 
    56518 
    56519 > select add #2.347
    56520 
    56521 3 models selected 
    56522 
    56523 > select add #2.146
    56524 
    56525 4 models selected 
    56526 Grouped 4 regions 
    56527 
    56528 > select clear
    56529 
    56530 [Repeated 1 time(s)]Drag select of 14375, 19792 of 22604 triangles, 14273,
    56531 14276, 14450, 14288, 14470, 14280, 14286, 14397, 14377, 14272, 14281, 14560,
    56532 17270 of 18064 triangles, 14380, 14330, 14306, 14098, 13665, 13679, 14559,
    56533 13654, 13839, 14147, 14123, 14145, 13657, 13660, 13667, 13685, 14152, 13686,
    56534 13688, 13670, 13652, 10880, 13610, 13621, 12155, 12207, 12170, 8109, 8080,
    56535 8089, 8096, 8097, 8104, 8087, 8102, 8103, 8131, 8108, 8128, 8090, 8118, 8085,
    56536 8084, 8082, 13512, 8110, 8115, 10873, 8078, 8132, 8111, 8079, 8098, 8112,
    56537 8123, 8125, 8121, 8093 
    56538 Grouped 71 regions 
    56539 Showing 907 region surfaces 
    56540 
    56541 > select #2.600
    56542 
    56543 1 model selected 
    56544 
    56545 > select add #2.650
    56546 
    56547 2 models selected 
    56548 
    56549 > select add #2.603
    56550 
    56551 3 models selected 
    56552 
    56553 > select add #2.718
    56554 
    56555 4 models selected 
    56556 
    56557 > select add #2.675
    56558 
    56559 5 models selected 
    56560 
    56561 > select add #2.85
    56562 
    56563 6 models selected 
    56564 Grouped 6 regions 
    56565 
    56566 > select #2.190
    56567 
    56568 1 model selected 
    56569 
    56570 > select add #2.178
    56571 
    56572 2 models selected 
    56573 
    56574 > select add #2.189
    56575 
    56576 3 models selected 
    56577 Ungrouped to 9 regions 
    56578 
    56579 > select #2.110
    56580 
    56581 1 model selected 
    56582 
    56583 > select add #2.113
    56584 
    56585 2 models selected 
    56586 
    56587 > select add #2.98
    56588 
    56589 3 models selected 
    56590 
    56591 > select add #2.99
    56592 
    56593 4 models selected 
    56594 
    56595 > select add #2.93
    56596 
    56597 5 models selected 
    56598 
    56599 > select add #2.87
    56600 
    56601 6 models selected 
    56602 Ungrouped to 13 regions 
    56603 
    56604 > select #2.119
    56605 
    56606 1 model selected 
    56607 
    56608 > select add #2.121
    56609 
    56610 2 models selected 
    56611 
    56612 > select add #2.208
    56613 
    56614 3 models selected 
    56615 
    56616 > select add #2.209
    56617 
    56618 4 models selected 
    56619 
    56620 > select add #2.190
    56621 
    56622 5 models selected 
    56623 Grouped 5 regions 
    56624 
    56625 > select add #2.207
    56626 
    56627 2 models selected 
    56628 Grouped 2 regions 
    56629 
    56630 > select #2.191
    56631 
    56632 1 model selected 
    56633 
    56634 > select add #2.177
    56635 
    56636 2 models selected 
    56637 
    56638 > select add #2.182
    56639 
    56640 3 models selected 
    56641 
    56642 > select add #2.174
    56643 
    56644 4 models selected 
    56645 
    56646 > select add #2.180
    56647 
    56648 5 models selected 
    56649 Ungrouped to 13 regions 
    56650 Ungrouped to 20 regions 
    56651 
    56652 > select clear
    56653 
    56654 > select #2.233
    56655 
    56656 1 model selected 
    56657 
    56658 > select add #2.226
    56659 
    56660 2 models selected 
    56661 
    56662 > select add #2.227
    56663 
    56664 3 models selected 
    56665 
    56666 > select add #2.180
    56667 
    56668 4 models selected 
    56669 
    56670 > select add #2.182
    56671 
    56672 5 models selected 
    56673 
    56674 > select add #2.228
    56675 
    56676 6 models selected 
    56677 
    56678 > select add #2.231
    56679 
    56680 7 models selected 
    56681 
    56682 > select add #2.268
    56683 
    56684 8 models selected 
    56685 
    56686 > select add #2.344
    56687 
    56688 9 models selected 
    56689 
    56690 > select add #2.242
    56691 
    56692 10 models selected 
    56693 
    56694 > select subtract #2.242
    56695 
    56696 9 models selected 
    56697 Grouped 9 regions 
    56698 
    56699 > select add #2.87
    56700 
    56701 2 models selected 
    56702 Showing 921 region surfaces 
    56703 
    56704 > select add #2.85
    56705 
    56706 3 models selected 
    56707 Grouped 3 regions 
    56708 
    56709 > select clear
    56710 
    56711 > select #2.85
    56712 
    56713 1 model selected 
    56714 
    56715 > select #2.186
    56716 
    56717 1 model selected 
    56718 
    56719 > select add #2.181
    56720 
    56721 2 models selected 
    56722 
    56723 > select add #2.184
    56724 
    56725 3 models selected 
    56726 
    56727 > select add #2.175
    56728 
    56729 4 models selected 
    56730 
    56731 > select add #2.187
    56732 
    56733 5 models selected 
    56734 
    56735 > select add #2.188
    56736 
    56737 6 models selected 
    56738 
    56739 > select add #2.176
    56740 
    56741 7 models selected 
    56742 
    56743 > select add #2.183
    56744 
    56745 8 models selected 
    56746 
    56747 > select add #2.193
    56748 
    56749 9 models selected 
    56750 Ungrouped to 26 regions 
    56751 Ungrouped to 35 regions 
    56752 Ungrouped to 15 regions 
    56753 
    56754 > select #2.970
    56755 
    56756 1 model selected 
    56757 
    56758 > select add #2.971
    56759 
    56760 2 models selected 
    56761 
    56762 > select add #2.210
    56763 
    56764 3 models selected 
    56765 
    56766 > select add #2.226
    56767 
    56768 4 models selected 
    56769 
    56770 > select add #2.442
    56771 
    56772 5 models selected 
    56773 
    56774 > select add #2.444
    56775 
    56776 6 models selected 
    56777 
    56778 > select add #2.446
    56779 
    56780 7 models selected 
    56781 
    56782 > select add #2.447
    56783 
    56784 8 models selected 
    56785 
    56786 > select add #2.717
    56787 
    56788 9 models selected 
    56789 
    56790 > select add #2.718
    56791 
    56792 10 models selected 
    56793 
    56794 > select add #2.188
    56795 
    56796 11 models selected 
    56797 
    56798 > select add #2.193
    56799 
    56800 12 models selected 
    56801 
    56802 > select add #2.456
    56803 
    56804 13 models selected 
    56805 
    56806 > select add #2.588
    56807 
    56808 14 models selected 
    56809 
    56810 > select add #2.591
    56811 
    56812 15 models selected 
    56813 
    56814 > select add #2.600
    56815 
    56816 16 models selected 
    56817 
    56818 > select add #2.98
    56819 
    56820 17 models selected 
    56821 
    56822 > select add #2.99
    56823 
    56824 18 models selected 
    56825 Grouped 18 regions 
    56826 Showing 946 region surfaces 
    56827 
    56828 > select add #2.85
    56829 
    56830 2 models selected 
    56831 Grouped 2 regions 
    56832 Opened L0_imasked_imasked_imasked as #9, grid size 250,250,250, pixel 4.3,
    56833 shown at step 1, values float32 
    56834 
    56835 The cached device pixel ratio value was stale on window expose. Please file a
    56836 QTBUG which explains how to reproduce. 
    56837 
    56838 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/PflC.mrc models #9
    56839 
    56840 Opened L0_imasked_imasked_imasked as #10, grid size 250,250,250, pixel 4.3,
    56841 shown at step 1, values float32 
    56842 Segmenting L0_imasked_imasked_imasked, density threshold 0.010668 
    56843 Showing 917 region surfaces 
    56844 9268 watershed regions, grouped to 917 regions 
    56845 Showing L0_imasked_imasked_imasked.seg - 917 regions, 917 surfaces 
    56846 
    56847 > hide #!9 models
    56848 
    56849 > show #!9 models
    56850 
    56851 > select #2.564
    56852 
    56853 1 model selected 
    56854 
    56855 > select add #2.563
    56856 
    56857 2 models selected 
    56858 
    56859 > select add #2.579
    56860 
    56861 3 models selected 
    56862 
    56863 > select add #2.572
    56864 
    56865 4 models selected 
    56866 
    56867 > select add #2.569
    56868 
    56869 5 models selected 
    56870 
    56871 > select add #2.576
    56872 
    56873 6 models selected 
    56874 
    56875 > select add #2.565
    56876 
    56877 7 models selected 
    56878 
    56879 > select add #2.574
    56880 
    56881 8 models selected 
    56882 
    56883 > select add #2.571
    56884 
    56885 9 models selected 
    56886 
    56887 > select add #2.585
    56888 
    56889 10 models selected 
    56890 
    56891 > select add #2.559
    56892 
    56893 11 models selected 
    56894 
    56895 > select add #2.587
    56896 
    56897 12 models selected 
    56898 
    56899 > select add #2.581
    56900 
    56901 13 models selected 
    56902 
    56903 > select add #2.592
    56904 
    56905 14 models selected 
    56906 
    56907 > select add #2.562
    56908 
    56909 15 models selected 
    56910 
    56911 > select add #2.549
    56912 
    56913 16 models selected 
    56914 
    56915 > select add #2.561
    56916 
    56917 17 models selected 
    56918 Grouped 17 regions 
    56919 
    56920 > hide #!9 models
    56921 
    56922 Opened L0_imasked_imasked_imasked_imasked as #11, grid size 250,250,250, pixel
    56923 4.3, shown at step 1, values float32 
    56924 
    56925 The cached device pixel ratio value was stale on window expose. Please file a
    56926 QTBUG which explains how to reproduce. 
    56927 
    56928 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/PflD.mrc models #11
    56929 
    56930 Opened L0_imasked_imasked_imasked_imasked as #12, grid size 250,250,250, pixel
    56931 4.3, shown at step 1, values float32 
    56932 Segmenting L0_imasked_imasked_imasked_imasked, density threshold 0.010668 
    56933 Showing 900 region surfaces 
    56934 9251 watershed regions, grouped to 900 regions 
    56935 Showing L0_imasked_imasked_imasked_imasked.seg - 900 regions, 900 surfaces 
    56936 
    56937 > select #2.112
    56938 
    56939 1 model selected 
    56940 
    56941 > select add #2.110
    56942 
    56943 2 models selected 
    56944 
    56945 > select add #2.155
    56946 
    56947 3 models selected 
    56948 
    56949 > select add #2.142
    56950 
    56951 4 models selected 
    56952 
    56953 > select add #2.138
    56954 
    56955 5 models selected 
    56956 
    56957 > select add #2.253
    56958 
    56959 6 models selected 
    56960 
    56961 > select add #2.103
    56962 
    56963 7 models selected 
    56964 
    56965 > select add #2.165
    56966 
    56967 8 models selected 
    56968 
    56969 > select add #2.145
    56970 
    56971 9 models selected 
    56972 
    56973 > select add #2.136
    56974 
    56975 10 models selected 
    56976 Grouped 10 regions 
    56977 
    56978 > hide #!10 models
    56979 
    56980 > hide #!11 models
    56981 
    56982 > hide #!12 models
    56983 
    56984 > select add #2.428
    56985 
    56986 2 models selected 
    56987 
    56988 > select add #2.382
    56989 
    56990 3 models selected 
    56991 
    56992 > select add #2.101
    56993 
    56994 4 models selected 
    56995 
    56996 > select add #2.166
    56997 
    56998 5 models selected 
    56999 
    57000 > select add #2.121
    57001 
    57002 6 models selected 
    57003 
    57004 > select add #2.510
    57005 
    57006 7 models selected 
    57007 
    57008 > select add #2.424
    57009 
    57010 8 models selected 
    57011 
    57012 > select add #2.488
    57013 
    57014 9 models selected 
    57015 
    57016 > select add #2.519
    57017 
    57018 10 models selected 
    57019 
    57020 > select add #2.394
    57021 
    57022 11 models selected 
    57023 
    57024 > select add #2.77
    57025 
    57026 12 models selected 
    57027 
    57028 > select add #2.105
    57029 
    57030 13 models selected 
    57031 
    57032 > select add #2.160
    57033 
    57034 14 models selected 
    57035 
    57036 > select add #2.109
    57037 
    57038 15 models selected 
    57039 
    57040 > select add #2.182
    57041 
    57042 16 models selected 
    57043 
    57044 > select add #2.422
    57045 
    57046 17 models selected 
    57047 
    57048 > select add #2.460
    57049 
    57050 18 models selected 
    57051 
    57052 > select add #2.477
    57053 
    57054 19 models selected 
    57055 
    57056 > select add #2.176
    57057 
    57058 20 models selected 
    57059 
    57060 > select add #2.576
    57061 
    57062 21 models selected 
    57063 
    57064 > select add #2.94
    57065 
    57066 22 models selected 
    57067 
    57068 > select add #2.386
    57069 
    57070 23 models selected 
    57071 
    57072 > select add #2.106
    57073 
    57074 24 models selected 
    57075 
    57076 > select add #2.122
    57077 
    57078 25 models selected 
    57079 
    57080 > select add #2.139
    57081 
    57082 26 models selected 
    57083 
    57084 > select add #2.113
    57085 
    57086 27 models selected 
    57087 
    57088 > select add #2.87
    57089 
    57090 28 models selected 
    57091 
    57092 > select add #2.192
    57093 
    57094 29 models selected 
    57095 
    57096 > select add #2.111
    57097 
    57098 30 models selected 
    57099 
    57100 > select add #2.126
    57101 
    57102 31 models selected 
    57103 
    57104 > select add #2.71
    57105 
    57106 32 models selected 
    57107 
    57108 > select add #2.67
    57109 
    57110 33 models selected 
    57111 
    57112 > select add #2.41
    57113 
    57114 34 models selected 
    57115 
    57116 > select add #2.123
    57117 
    57118 35 models selected 
    57119 
    57120 > select add #2.148
    57121 
    57122 36 models selected 
    57123 
    57124 > select add #2.193
    57125 
    57126 37 models selected 
    57127 
    57128 > select add #2.404
    57129 
    57130 38 models selected 
    57131 
    57132 > select add #2.197
    57133 
    57134 39 models selected 
    57135 
    57136 > select add #2.196
    57137 
    57138 40 models selected 
    57139 
    57140 > select add #2.190
    57141 
    57142 41 models selected 
    57143 
    57144 > select add #2.169
    57145 
    57146 42 models selected 
    57147 
    57148 > select add #2.278
    57149 
    57150 43 models selected 
    57151 
    57152 > select add #2.634
    57153 
    57154 44 models selected 
    57155 
    57156 > select add #2.189
    57157 
    57158 45 models selected 
    57159 
    57160 > select add #2.537
    57161 
    57162 46 models selected 
    57163 
    57164 > select add #2.239
    57165 
    57166 47 models selected 
    57167 
    57168 > select add #2.313
    57169 
    57170 48 models selected 
    57171 
    57172 > select add #2.689
    57173 
    57174 49 models selected 
    57175 
    57176 > select add #2.173
    57177 
    57178 50 models selected 
    57179 
    57180 > select add #2.164
    57181 
    57182 51 models selected 
    57183 
    57184 > select add #2.302
    57185 
    57186 52 models selected 
    57187 
    57188 > select add #2.181
    57189 
    57190 53 models selected 
    57191 
    57192 > select add #2.177
    57193 
    57194 54 models selected 
    57195 
    57196 > select add #2.174
    57197 
    57198 55 models selected 
    57199 
    57200 > select add #2.156
    57201 
    57202 56 models selected 
    57203 
    57204 > select add #2.408
    57205 
    57206 57 models selected 
    57207 
    57208 > select add #2.346
    57209 
    57210 58 models selected 
    57211 
    57212 > select add #2.180
    57213 
    57214 59 models selected 
    57215 
    57216 > select add #2.124
    57217 
    57218 60 models selected 
    57219 
    57220 > select add #2.207
    57221 
    57222 61 models selected 
    57223 
    57224 > select add #2.503
    57225 
    57226 62 models selected 
    57227 
    57228 > select add #2.443
    57229 
    57230 63 models selected 
    57231 
    57232 > select add #2.282
    57233 
    57234 64 models selected 
    57235 
    57236 > select add #2.602
    57237 
    57238 65 models selected 
    57239 
    57240 > select add #2.401
    57241 
    57242 66 models selected 
    57243 
    57244 > select add #2.331
    57245 
    57246 67 models selected 
    57247 
    57248 > select add #2.269
    57249 
    57250 68 models selected 
    57251 
    57252 > select add #2.195
    57253 
    57254 69 models selected 
    57255 
    57256 > select add #2.586
    57257 
    57258 70 models selected 
    57259 
    57260 > select add #2.558
    57261 
    57262 71 models selected 
    57263 
    57264 > select add #2.298
    57265 
    57266 72 models selected 
    57267 
    57268 > select add #2.221
    57269 
    57270 73 models selected 
    57271 
    57272 > select add #2.479
    57273 
    57274 74 models selected 
    57275 
    57276 > select add #2.625
    57277 
    57278 75 models selected 
    57279 
    57280 > select add #2.262
    57281 
    57282 76 models selected 
    57283 
    57284 > select add #2.535
    57285 
    57286 77 models selected 
    57287 
    57288 > select add #2.660
    57289 
    57290 78 models selected 
    57291 
    57292 > select add #2.450
    57293 
    57294 79 models selected 
    57295 
    57296 > select add #2.161
    57297 
    57298 80 models selected 
    57299 
    57300 > select add #2.661
    57301 
    57302 81 models selected 
    57303 
    57304 > select add #2.399
    57305 
    57306 82 models selected 
    57307 
    57308 > select add #2.521
    57309 
    57310 83 models selected 
    57311 
    57312 > select add #2.255
    57313 
    57314 84 models selected 
    57315 
    57316 > select add #2.297
    57317 
    57318 85 models selected 
    57319 
    57320 > select add #2.179
    57321 
    57322 86 models selected 
    57323 
    57324 > select add #2.406
    57325 
    57326 87 models selected 
    57327 
    57328 > select add #2.413
    57329 
    57330 88 models selected 
    57331 
    57332 > select add #2.261
    57333 
    57334 89 models selected 
    57335 
    57336 > select add #2.526
    57337 
    57338 90 models selected 
    57339 
    57340 > select add #2.590
    57341 
    57342 91 models selected 
    57343 
    57344 > select add #2.525
    57345 
    57346 92 models selected 
    57347 
    57348 > select add #2.250
    57349 
    57350 93 models selected 
    57351 
    57352 > select add #2.529
    57353 
    57354 94 models selected 
    57355 
    57356 > select add #2.266
    57357 
    57358 95 models selected 
    57359 
    57360 > select add #2.599
    57361 
    57362 96 models selected 
    57363 
    57364 > select add #2.459
    57365 
    57366 97 models selected 
    57367 
    57368 > select add #2.186
    57369 
    57370 98 models selected 
    57371 
    57372 > select add #2.426
    57373 
    57374 99 models selected 
    57375 
    57376 > select add #2.191
    57377 
    57378 100 models selected 
    57379 
    57380 > select add #2.421
    57381 
    57382 101 models selected 
    57383 
    57384 > select add #2.326
    57385 
    57386 102 models selected 
    57387 
    57388 > select add #2.385
    57389 
    57390 103 models selected 
    57391 
    57392 > select add #2.163
    57393 
    57394 104 models selected 
    57395 
    57396 > select add #2.396
    57397 
    57398 105 models selected 
    57399 
    57400 > select add #2.354
    57401 
    57402 106 models selected 
    57403 
    57404 > select add #2.457
    57405 
    57406 107 models selected 
    57407 
    57408 > select add #2.621
    57409 
    57410 108 models selected 
    57411 
    57412 > select add #2.380
    57413 
    57414 109 models selected 
    57415 
    57416 > select add #2.225
    57417 
    57418 110 models selected 
    57419 
    57420 > select add #2.317
    57421 
    57422 111 models selected 
    57423 
    57424 > select add #2.184
    57425 
    57426 112 models selected 
    57427 
    57428 > select add #2.361
    57429 
    57430 113 models selected 
    57431 
    57432 > select add #2.387
    57433 
    57434 114 models selected 
    57435 
    57436 > select add #2.199
    57437 
    57438 115 models selected 
    57439 
    57440 > select add #2.336
    57441 
    57442 116 models selected 
    57443 
    57444 > select add #2.447
    57445 
    57446 117 models selected 
    57447 
    57448 > select add #2.158
    57449 
    57450 118 models selected 
    57451 
    57452 > select add #2.411
    57453 
    57454 119 models selected 
    57455 
    57456 > select add #2.570
    57457 
    57458 120 models selected 
    57459 
    57460 > select add #2.468
    57461 
    57462 121 models selected 
    57463 Drag select of 13339, 21 of 52168 triangles, 13401, 16 of 51284 triangles,
    57464 12911, 43 of 17832 triangles, 13455, 31 of 15944 triangles, 5274, 6 of 5364
    57465 triangles, 13542, 59 of 9548 triangles, 12832, 15 of 5244 triangles, 13388, 19
    57466 of 5120 triangles 
    57467 
    57468 > select add #2.275
    57469 
    57470 130 models selected 
    57471 
    57472 > select add #2.449
    57473 
    57474 131 models selected 
    57475 
    57476 > select subtract #2.453
    57477 
    57478 130 models selected 
    57479 
    57480 > select add #2.453
    57481 
    57482 131 models selected 
    57483 
    57484 > select subtract #2.431
    57485 
    57486 130 models selected 
    57487 
    57488 > select subtract #2.6
    57489 
    57490 129 models selected 
    57491 
    57492 > select add #2.431
    57493 
    57494 130 models selected 
    57495 
    57496 > select subtract #2.11
    57497 
    57498 129 models selected 
    57499 
    57500 > select subtract #2.431
    57501 
    57502 128 models selected 
    57503 Showing 891 region surfaces 
    57504 
    57505 > select clear
    57506 
    57507 Drag select of 13304, 37356 of 37380 triangles, 13358, 29953 of 30572
    57508 triangles, 13364, 27403 of 30864 triangles, 13477, 15431 of 26464 triangles,
    57509 13500, 12563, 18598 of 24212 triangles, 13337, 12534, 9841 of 19672 triangles,
    57510 13320, 13483, 19006 of 24376 triangles, 12583, 11018 of 21688 triangles,
    57511 13577, 12820, 12578, 13281, 13282, 13256 of 22308 triangles, 12696, 11405 of
    57512 18696 triangles, 13342, 13467, 13523, 5294 of 18688 triangles, 13619, 172 of
    57513 15900 triangles, 13300, 10414 of 17236 triangles, 13481, 13306, 13406, 13474,
    57514 12556, 12871 of 13420 triangles, 13493, 13353, 15759 of 16180 triangles,
    57515 12785, 11504 of 12336 triangles, 13287, 13646, 13101 of 17524 triangles,
    57516 13568, 8865 of 14668 triangles, 13645, 12531, 3782 of 11396 triangles, 12560,
    57517 13354, 13494, 13366, 12693, 6454 of 11680 triangles, 13565, 13575, 13330,
    57518 13312, 13322, 6210 of 14824 triangles, 13571, 13471, 6337 of 12228 triangles,
    57519 13545, 13405, 6593 of 13360 triangles, 13487, 13925 of 14032 triangles, 13439,
    57520 1596 of 12416 triangles, 13605, 12636, 10955 of 13388 triangles, 13498, 13254,
    57521 13661, 13413, 13352, 8927 of 11472 triangles, 13280, 12846, 13475, 13269, 1910
    57522 of 8804 triangles, 13562, 12491, 13509, 1026 of 8528 triangles, 12524, 11745,
    57523 12688, 13628, 12694, 12810, 13594, 12903, 12508, 12529, 13634, 3876 of 9280
    57524 triangles, 12562, 2194 of 6232 triangles, 12836, 2290 of 7052 triangles,
    57525 13567, 3927 of 8540 triangles, 13464, 12796, 12805, 13485, 11053, 12860,
    57526 12108, 12516, 12832, 13164, 13640, 11070, 11906, 5095 of 5332 triangles,
    57527 11122, 13470, 12808, 13045, 5151 of 5256 triangles, 11511, 11040, 10941,
    57528 13606, 2040 of 5700 triangles, 12690, 1649 of 4968 triangles, 12672, 5485 of
    57529 5508 triangles, 13309, 12766, 12855, 11877, 1846 of 3788 triangles, 11045,
    57530 13187, 13220, 3226 of 4596 triangles, 10924, 4057 of 4156 triangles, 12638,
    57531 12448, 10940, 13031, 12080, 10953, 492, 13681 
    57532 Grouped 118 regions 
    57533 Drag select of 13302, 13283, 12854, 13116, 12819, 11481 
    57534 Grouped 7 regions 
    57535 Showing 768 region surfaces 
    57536 
    57537 > select clear
    57538 
    57539 > select #2.41
    57540 
    57541 1 model selected 
    57542 Opened L0_imasked_imasked_imasked_imasked_imasked as #13, grid size
    57543 250,250,250, pixel 4.3, shown at step 1, values float32 
    57544 Segmenting L0_imasked_imasked_imasked_imasked_imasked, density threshold
    57545 0.010668 
    57546 Showing 768 region surfaces 
    57547 6984 watershed regions, grouped to 768 regions 
    57548 Showing L0_imasked_imasked_imasked_imasked_imasked.seg - 768 regions, 768
    57549 surfaces 
    57550 Drag select of 10178, 10095, 10170, 79 of 56104 triangles, 10052, 71186 of
    57551 71560 triangles, 10000, 10099, 10137, 10139, 10284, 10181, 8323, 4325 of 11168
    57552 triangles, 10093, 3805 of 9260 triangles, 9498, 3311 of 8832 triangles, 10097,
    57553 8337, 1360 of 6568 triangles, 9921, 9250, 998 of 5700 triangles, 10167, 24 of
    57554 5116 triangles, 9387, 62 of 3216 triangles, 9391, 38 of 3016 triangles, 10159,
    57555 10122, 10160, 9997, 10224, 10019, 9400, 10229, 10126, 10132, 10244, 9557,
    57556 10215, 10243, 10311, 10276, 10172, 10087, 10266, 10189, 10207, 9759, 10183,
    57557 9527, 10029, 9406, 9410, 10200, 10098, 10184, 10163, 10202, 9737, 6448, 10114,
    57558 10038, 630 of 1492 triangles, 10130, 536 of 1276 triangles, 10186, 10145,
    57559 9285, 10146, 10064, 10102, 10004, 9005, 10119, 9300, 7598, 8759, 9776, 9293,
    57560 10287, 10055, 10173, 10205, 10109, 9568, 138 of 744 triangles, 10147, 10191,
    57561 392 of 980 triangles, 6916, 10115, 166 of 752 triangles, 6419, 9598, 10124,
    57562 375 of 692 triangles, 5878, 10142, 10112, 248 of 552 triangles, 6557, 10121,
    57563 10106, 127 of 540 triangles, 5883, 10156, 10231, 6650, 5886, 8618, 10316,
    57564 5880, 6606, 10157, 10107, 351 of 452 triangles, 9558, 10162, 10100, 9530,
    57565 6608, 6891, 9653, 10171, 160 of 340 triangles, 6610, 10111, 6607, 10150, 6949,
    57566 96 of 188 triangles, 6787, 9669, 10161, 6752, 9672, 9476, 5898, 6902, 36 of
    57567 180 triangles, 9553, 9123, 10131, 6915, 6743, 6750, 6563, 6623, 6832, 6847,
    57568 10168, 6644, 6913, 6672, 6852, 6849, 6807, 74 of 112 triangles, 6809, 10129,
    57569 6520, 5895, 6638, 6624, 6570, 6579, 6643, 6435, 6605, 6755, 6666, 6747, 6636,
    57570 6838, 52 of 56 triangles, 13 L0_imasked_imasked_imasked_imasked_imasked 
    57571 
    57572 > hide #!13 models
    57573 
    57574 > select subtract #13
    57575 
    57576 155 models selected 
    57577 
    57578 > select add #2.394
    57579 
    57580 156 models selected 
    57581 
    57582 > select add #2.362
    57583 
    57584 157 models selected 
    57585 
    57586 > select add #2.414
    57587 
    57588 158 models selected 
    57589 
    57590 > select add #2.425
    57591 
    57592 159 models selected 
    57593 
    57594 > select add #2.376
    57595 
    57596 160 models selected 
    57597 
    57598 > select add #2.409
    57599 
    57600 161 models selected 
    57601 
    57602 > select add #2.206
    57603 
    57604 162 models selected 
    57605 
    57606 > select add #2.386
    57607 
    57608 163 models selected 
    57609 
    57610 > select add #2.374
    57611 
    57612 164 models selected 
    57613 
    57614 > select add #2.230
    57615 
    57616 165 models selected 
    57617 
    57618 > select add #2.492
    57619 
    57620 166 models selected 
    57621 
    57622 > select add #2.393
    57623 
    57624 167 models selected 
    57625 
    57626 > select add #2.363
    57627 
    57628 168 models selected 
    57629 
    57630 > select add #2.222
    57631 
    57632 169 models selected 
    57633 
    57634 > select add #2.398
    57635 
    57636 170 models selected 
    57637 
    57638 > select add #2.387
    57639 
    57640 171 models selected 
    57641 
    57642 > select add #2.144
    57643 
    57644 172 models selected 
    57645 
    57646 > select add #2.523
    57647 
    57648 173 models selected 
    57649 
    57650 > select add #2.396
    57651 
    57652 174 models selected 
    57653 
    57654 > select add #2.460
    57655 
    57656 175 models selected 
    57657 
    57658 > select add #2.339
    57659 
    57660 176 models selected 
    57661 
    57662 > select add #2.350
    57663 
    57664 177 models selected 
    57665 
    57666 > select add #2.427
    57667 
    57668 178 models selected 
    57669 
    57670 > select add #2.385
    57671 
    57672 179 models selected 
    57673 
    57674 > select add #2.364
    57675 
    57676 180 models selected 
    57677 
    57678 > select add #2.499
    57679 
    57680 181 models selected 
    57681 
    57682 > select add #2.451
    57683 
    57684 182 models selected 
    57685 
    57686 > select add #2.449
    57687 
    57688 183 models selected 
    57689 
    57690 > select add #2.218
    57691 
    57692 184 models selected 
    57693 
    57694 > select add #2.384
    57695 
    57696 185 models selected 
    57697 
    57698 > select add #2.391
    57699 
    57700 186 models selected 
    57701 
    57702 > select subtract #2.391
    57703 
    57704 185 models selected 
    57705 
    57706 > select add #2.314
    57707 
    57708 186 models selected 
    57709 
    57710 > select add #2.391
    57711 
    57712 187 models selected 
    57713 
    57714 > select add #2.435
    57715 
    57716 188 models selected 
    57717 
    57718 > select add #2.380
    57719 
    57720 189 models selected 
    57721 
    57722 > select add #2.397
    57723 
    57724 190 models selected 
    57725 
    57726 > select add #2.16
    57727 
    57728 191 models selected 
    57729 Grouped 191 regions 
    57730 
    57731 > select add #2.156
    57732 
    57733 2 models selected 
    57734 
    57735 > select add #2.160
    57736 
    57737 3 models selected 
    57738 
    57739 > select add #2.148
    57740 
    57741 4 models selected 
    57742 
    57743 > select add #2.161
    57744 
    57745 5 models selected 
    57746 
    57747 > select add #2.162
    57748 
    57749 6 models selected 
    57750 
    57751 > select add #2.152
    57752 
    57753 7 models selected 
    57754 
    57755 > select add #2.154
    57756 
    57757 8 models selected 
    57758 
    57759 > select add #2.165
    57760 
    57761 9 models selected 
    57762 
    57763 > select add #2.170
    57764 
    57765 10 models selected 
    57766 
    57767 > select add #2.155
    57768 
    57769 11 models selected 
    57770 
    57771 > select add #2.159
    57772 
    57773 12 models selected 
    57774 
    57775 > select add #2.164
    57776 
    57777 13 models selected 
    57778 
    57779 > select add #2.158
    57780 
    57781 14 models selected 
    57782 
    57783 > select add #2.157
    57784 
    57785 15 models selected 
    57786 
    57787 > select add #2.153
    57788 
    57789 16 models selected 
    57790 
    57791 > select add #2.151
    57792 
    57793 17 models selected 
    57794 
    57795 > select add #2.163
    57796 
    57797 18 models selected 
    57798 Grouped 18 regions 
    57799 
    57800 > select add #2.90
    57801 
    57802 2 models selected 
    57803 
    57804 > select add #2.72
    57805 
    57806 3 models selected 
    57807 
    57808 > select add #2.80
    57809 
    57810 4 models selected 
    57811 
    57812 > select add #2.73
    57813 
    57814 5 models selected 
    57815 
    57816 > select add #2.93
    57817 
    57818 6 models selected 
    57819 
    57820 > select add #2.97
    57821 
    57822 7 models selected 
    57823 
    57824 > select add #2.92
    57825 
    57826 8 models selected 
    57827 
    57828 > select add #2.96
    57829 
    57830 9 models selected 
    57831 
    57832 > select add #2.74
    57833 
    57834 10 models selected 
    57835 
    57836 > select add #2.78
    57837 
    57838 11 models selected 
    57839 
    57840 > select add #2.81
    57841 
    57842 12 models selected 
    57843 
    57844 > select add #2.77
    57845 
    57846 13 models selected 
    57847 
    57848 > select add #2.79
    57849 
    57850 14 models selected 
    57851 
    57852 > select add #2.88
    57853 
    57854 15 models selected 
    57855 
    57856 > select add #2.86
    57857 
    57858 16 models selected 
    57859 
    57860 > select add #2.85
    57861 
    57862 17 models selected 
    57863 
    57864 > select add #2.89
    57865 
    57866 18 models selected 
    57867 
    57868 > select add #2.122
    57869 
    57870 19 models selected 
    57871 
    57872 > select add #2.121
    57873 
    57874 20 models selected 
    57875 
    57876 > select add #2.124
    57877 
    57878 21 models selected 
    57879 
    57880 > select add #2.109
    57881 
    57882 22 models selected 
    57883 
    57884 > select add #2.102
    57885 
    57886 23 models selected 
    57887 
    57888 > select add #2.111
    57889 
    57890 24 models selected 
    57891 
    57892 > select add #2.103
    57893 
    57894 25 models selected 
    57895 
    57896 > select add #2.120
    57897 
    57898 26 models selected 
    57899 
    57900 > select add #2.127
    57901 
    57902 27 models selected 
    57903 
    57904 > select add #2.118
    57905 
    57906 28 models selected 
    57907 
    57908 > select add #2.117
    57909 
    57910 29 models selected 
    57911 
    57912 > select add #2.123
    57913 
    57914 30 models selected 
    57915 
    57916 > select add #2.113
    57917 
    57918 31 models selected 
    57919 
    57920 > select add #2.112
    57921 
    57922 32 models selected 
    57923 
    57924 > select add #2.116
    57925 
    57926 33 models selected 
    57927 
    57928 > select add #2.110
    57929 
    57930 34 models selected 
    57931 
    57932 > select add #2.115
    57933 
    57934 35 models selected 
    57935 Grouped 35 regions 
    57936 
    57937 > select add #2.3
    57938 
    57939 2 models selected 
    57940 
    57941 > select add #2.43
    57942 
    57943 3 models selected 
    57944 
    57945 > select add #2.40
    57946 
    57947 4 models selected 
    57948 
    57949 > select add #2.46
    57950 
    57951 5 models selected 
    57952 
    57953 > select add #2.49
    57954 
    57955 6 models selected 
    57956 
    57957 > select add #2.45
    57958 
    57959 7 models selected 
    57960 
    57961 > select add #2.55
    57962 
    57963 8 models selected 
    57964 
    57965 > select add #2.36
    57966 
    57967 9 models selected 
    57968 
    57969 > select add #2.59
    57970 
    57971 10 models selected 
    57972 
    57973 > select add #2.35
    57974 
    57975 11 models selected 
    57976 
    57977 > select add #2.38
    57978 
    57979 12 models selected 
    57980 
    57981 > select add #2.34
    57982 
    57983 13 models selected 
    57984 
    57985 > select add #2.50
    57986 
    57987 14 models selected 
    57988 
    57989 > select add #2.32
    57990 
    57991 15 models selected 
    57992 
    57993 > select add #2.47
    57994 
    57995 16 models selected 
    57996 
    57997 > select add #2.53
    57998 
    57999 17 models selected 
    58000 
    58001 > select add #2.41
    58002 
    58003 18 models selected 
    58004 
    58005 > select add #2.44
    58006 
    58007 19 models selected 
    58008 
    58009 > select add #2.294
    58010 
    58011 20 models selected 
    58012 
    58013 > select add #2.183
    58014 
    58015 21 models selected 
    58016 
    58017 > select add #2.296
    58018 
    58019 22 models selected 
    58020 
    58021 > select add #2.191
    58022 
    58023 23 models selected 
    58024 
    58025 > select add #2.310
    58026 
    58027 24 models selected 
    58028 
    58029 > select add #2.221
    58030 
    58031 25 models selected 
    58032 
    58033 > select subtract #2.221
    58034 
    58035 24 models selected 
    58036 
    58037 > select add #2.184
    58038 
    58039 25 models selected 
    58040 
    58041 > select add #2.221
    58042 
    58043 26 models selected 
    58044 
    58045 > select add #2.214
    58046 
    58047 27 models selected 
    58048 
    58049 > select add #2.301
    58050 
    58051 28 models selected 
    58052 
    58053 > select add #2.194
    58054 
    58055 29 models selected 
    58056 
    58057 > select add #2.288
    58058 
    58059 30 models selected 
    58060 
    58061 > select add #2.220
    58062 
    58063 31 models selected 
    58064 
    58065 > select add #2.229
    58066 
    58067 32 models selected 
    58068 
    58069 > select add #2.210
    58070 
    58071 33 models selected 
    58072 
    58073 > select add #2.198
    58074 
    58075 34 models selected 
    58076 
    58077 > select add #2.285
    58078 
    58079 35 models selected 
    58080 
    58081 > select add #2.196
    58082 
    58083 36 models selected 
    58084 
    58085 > select add #2.37
    58086 
    58087 37 models selected 
    58088 
    58089 > select add #2.75
    58090 
    58091 38 models selected 
    58092 
    58093 > select add #2.61
    58094 
    58095 39 models selected 
    58096 
    58097 > select add #2.64
    58098 
    58099 40 models selected 
    58100 
    58101 > select add #2.56
    58102 
    58103 41 models selected 
    58104 
    58105 > select add #2.66
    58106 
    58107 42 models selected 
    58108 
    58109 > select add #2.54
    58110 
    58111 43 models selected 
    58112 
    58113 > select add #2.63
    58114 
    58115 44 models selected 
    58116 
    58117 > select add #2.71
    58118 
    58119 45 models selected 
    58120 
    58121 > select add #2.67
    58122 
    58123 46 models selected 
    58124 
    58125 > select add #2.62
    58126 
    58127 47 models selected 
    58128 
    58129 > select add #2.68
    58130 
    58131 48 models selected 
    58132 
    58133 > select add #2.51
    58134 
    58135 49 models selected 
    58136 
    58137 > select add #2.39
    58138 
    58139 50 models selected 
    58140 
    58141 > select add #2.52
    58142 
    58143 51 models selected 
    58144 
    58145 > select add #2.76
    58146 
    58147 52 models selected 
    58148 
    58149 > select add #2.58
    58150 
    58151 53 models selected 
    58152 
    58153 > select add #2.185
    58154 
    58155 54 models selected 
    58156 
    58157 > select add #2.186
    58158 
    58159 55 models selected 
    58160 
    58161 > select add #2.188
    58162 
    58163 56 models selected 
    58164 
    58165 > select add #2.173
    58166 
    58167 57 models selected 
    58168 
    58169 > select add #2.179
    58170 
    58171 58 models selected 
    58172 
    58173 > select add #2.177
    58174 
    58175 59 models selected 
    58176 
    58177 > select add #2.180
    58178 
    58179 60 models selected 
    58180 
    58181 > select add #2.190
    58182 
    58183 61 models selected 
    58184 
    58185 > select add #2.182
    58186 
    58187 62 models selected 
    58188 
    58189 > select add #2.150
    58190 
    58191 63 models selected 
    58192 
    58193 > select add #2.181
    58194 
    58195 64 models selected 
    58196 
    58197 > select add #2.172
    58198 
    58199 65 models selected 
    58200 
    58201 > select add #2.171
    58202 
    58203 66 models selected 
    58204 
    58205 > select add #2.146
    58206 
    58207 67 models selected 
    58208 
    58209 > select add #2.200
    58210 
    58211 68 models selected 
    58212 
    58213 > select add #2.189
    58214 
    58215 69 models selected 
    58216 
    58217 > select add #2.192
    58218 
    58219 70 models selected 
    58220 
    58221 > select add #2.249
    58222 
    58223 71 models selected 
    58224 
    58225 > select add #2.265
    58226 
    58227 72 models selected 
    58228 
    58229 > select add #2.266
    58230 
    58231 73 models selected 
    58232 
    58233 > select add #2.234
    58234 
    58235 74 models selected 
    58236 
    58237 > select add #2.228
    58238 
    58239 75 models selected 
    58240 
    58241 > select add #2.291
    58242 
    58243 76 models selected 
    58244 
    58245 > select add #2.255
    58246 
    58247 77 models selected 
    58248 
    58249 > select add #2.224
    58250 
    58251 78 models selected 
    58252 
    58253 > select add #2.258
    58254 
    58255 79 models selected 
    58256 
    58257 > select add #2.280
    58258 
    58259 80 models selected 
    58260 
    58261 > select add #2.243
    58262 
    58263 81 models selected 
    58264 
    58265 > select add #2.283
    58266 
    58267 82 models selected 
    58268 
    58269 > select add #2.290
    58270 
    58271 83 models selected 
    58272 
    58273 > select add #2.223
    58274 
    58275 84 models selected 
    58276 
    58277 > select add #2.275
    58278 
    58279 85 models selected 
    58280 
    58281 > select add #2.226
    58282 
    58283 86 models selected 
    58284 
    58285 > select add #2.254
    58286 
    58287 87 models selected 
    58288 
    58289 > select add #2.279
    58290 
    58291 88 models selected 
    58292 
    58293 > select add #2.231
    58294 
    58295 89 models selected 
    58296 
    58297 > select add #2.241
    58298 
    58299 90 models selected 
    58300 
    58301 > select add #2.244
    58302 
    58303 91 models selected 
    58304 
    58305 > select add #2.289
    58306 
    58307 92 models selected 
    58308 
    58309 > select add #2.211
    58310 
    58311 93 models selected 
    58312 
    58313 > select add #2.287
    58314 
    58315 94 models selected 
    58316 
    58317 > select add #2.263
    58318 
    58319 95 models selected 
    58320 
    58321 > select add #2.260
    58322 
    58323 96 models selected 
    58324 
    58325 > select add #2.236
    58326 
    58327 97 models selected 
    58328 
    58329 > select add #2.257
    58330 
    58331 98 models selected 
    58332 
    58333 > select add #2.292
    58334 
    58335 99 models selected 
    58336 
    58337 > select add #2.235
    58338 
    58339 100 models selected 
    58340 
    58341 > select add #2.237
    58342 
    58343 101 models selected 
    58344 
    58345 > select add #2.269
    58346 
    58347 102 models selected 
    58348 
    58349 > select add #2.262
    58350 
    58351 103 models selected 
    58352 
    58353 > select add #2.232
    58354 
    58355 104 models selected 
    58356 
    58357 > select add #2.84
    58358 
    58359 105 models selected 
    58360 
    58361 > select add #2.100
    58362 
    58363 106 models selected 
    58364 
    58365 > select add #2.94
    58366 
    58367 107 models selected 
    58368 
    58369 > select add #2.57
    58370 
    58371 108 models selected 
    58372 
    58373 > select add #2.315
    58374 
    58375 109 models selected 
    58376 
    58377 > select add #2.335
    58378 
    58379 110 models selected 
    58380 
    58381 > select add #2.166
    58382 
    58383 111 models selected 
    58384 
    58385 > select add #2.82
    58386 
    58387 112 models selected 
    58388 
    58389 > select add #2.91
    58390 
    58391 113 models selected 
    58392 
    58393 > select add #2.65
    58394 
    58395 114 models selected 
    58396 
    58397 > select add #2.322
    58398 
    58399 115 models selected 
    58400 
    58401 > select add #2.99
    58402 
    58403 116 models selected 
    58404 
    58405 > select add #2.125
    58406 
    58407 117 models selected 
    58408 
    58409 > select add #2.31
    58410 
    58411 118 models selected 
    58412 
    58413 > select add #2.129
    58414 
    58415 119 models selected 
    58416 
    58417 > select add #2.205
    58418 
    58419 120 models selected 
    58420 
    58421 > select add #2.69
    58422 
    58423 121 models selected 
    58424 
    58425 > select add #2.114
    58426 
    58427 122 models selected 
    58428 
    58429 > select add #2.135
    58430 
    58431 123 models selected 
    58432 
    58433 > select add #2.119
    58434 
    58435 124 models selected 
    58436 
    58437 > select add #2.495
    58438 
    58439 125 models selected 
    58440 
    58441 > select add #2.98
    58442 
    58443 126 models selected 
    58444 
    58445 > select add #2.197
    58446 
    58447 127 models selected 
    58448 
    58449 > select add #2.105
    58450 
    58451 128 models selected 
    58452 
    58453 > select add #2.134
    58454 
    58455 129 models selected 
    58456 
    58457 > select add #2.104
    58458 
    58459 130 models selected 
    58460 
    58461 > select add #2.187
    58462 
    58463 131 models selected 
    58464 
    58465 > select subtract #2.187
    58466 
    58467 130 models selected 
    58468 
    58469 > select add #2.187
    58470 
    58471 131 models selected 
    58472 
    58473 > select add #2.278
    58474 
    58475 132 models selected 
    58476 
    58477 > select add #2.87
    58478 
    58479 133 models selected 
    58480 
    58481 > select add #2.328
    58482 
    58483 134 models selected 
    58484 
    58485 > select add #2.256
    58486 
    58487 135 models selected 
    58488 Grouped 135 regions 
    58489 
    58490 > select add #2.277
    58491 
    58492 2 models selected 
    58493 
    58494 > select add #2.297
    58495 
    58496 3 models selected 
    58497 
    58498 > select add #2.307
    58499 
    58500 4 models selected 
    58501 
    58502 > select add #2.251
    58503 
    58504 5 models selected 
    58505 
    58506 > select add #2.274
    58507 
    58508 6 models selected 
    58509 
    58510 > select add #2.252
    58511 
    58512 7 models selected 
    58513 
    58514 > select add #2.282
    58515 
    58516 8 models selected 
    58517 
    58518 > select add #2.286
    58519 
    58520 9 models selected 
    58521 
    58522 > select add #2.239
    58523 
    58524 10 models selected 
    58525 
    58526 > select add #2.253
    58527 
    58528 11 models selected 
    58529 
    58530 > select add #2.273
    58531 
    58532 12 models selected 
    58533 
    58534 > select add #2.281
    58535 
    58536 13 models selected 
    58537 
    58538 > select add #2.272
    58539 
    58540 14 models selected 
    58541 
    58542 > select add #2.259
    58543 
    58544 15 models selected 
    58545 
    58546 > select add #2.299
    58547 
    58548 16 models selected 
    58549 
    58550 > select add #2.267
    58551 
    58552 17 models selected 
    58553 
    58554 > select add #2.240
    58555 
    58556 18 models selected 
    58557 Grouped 18 regions 
    58558 
    58559 > select clear
    58560 
    58561 > select #2.83
    58562 
    58563 1 model selected 
    58564 
    58565 > select add #2.137
    58566 
    58567 2 models selected 
    58568 
    58569 > select add #2.95
    58570 
    58571 3 models selected 
    58572 
    58573 > select add #2.101
    58574 
    58575 4 models selected 
    58576 
    58577 > select add #2.268
    58578 
    58579 5 models selected 
    58580 
    58581 > select add #2.130
    58582 
    58583 6 models selected 
    58584 
    58585 > select add #2.107
    58586 
    58587 7 models selected 
    58588 
    58589 > select add #2.511
    58590 
    58591 8 models selected 
    58592 Grouped 8 regions 
    58593 Showing 369 region surfaces 
    58594 
    58595 > select add #2.1
    58596 
    58597 2 models selected 
    58598 Grouped 2 regions 
    58599 
    58600 > select clear
    58601 
    58602 > select #2.20
    58603 
    58604 1 model selected 
    58605 
    58606 > select add #2.208
    58607 
    58608 2 models selected 
    58609 
    58610 > select add #2.306
    58611 
    58612 3 models selected 
    58613 Drag select of 9578, 14 of 10576 triangles, 9416, 14 of 6092 triangles, 9426,
    58614 6 of 4972 triangles, 10324, 13 of 1743064 triangles 
    58615 
    58616 > select add #2.276
    58617 
    58618 6 models selected 
    58619 
    58620 > select clear
    58621 
    58622 > select #2.264
    58623 
    58624 1 model selected 
    58625 
    58626 > select add #2.139
    58627 
    58628 2 models selected 
    58629 
    58630 > select add #2.106
    58631 
    58632 3 models selected 
    58633 
    58634 > select subtract #2.106
    58635 
    58636 2 models selected 
    58637 
    58638 > select add #2.106
    58639 
    58640 3 models selected 
    58641 
    58642 > select add #2.227
    58643 
    58644 4 models selected 
    58645 
    58646 > select add #2.126
    58647 
    58648 5 models selected 
    58649 
    58650 > select add #2.217
    58651 
    58652 6 models selected 
    58653 
    58654 > select add #2.250
    58655 
    58656 7 models selected 
    58657 
    58658 > select add #2.176
    58659 
    58660 8 models selected 
    58661 
    58662 > select add #2.333
    58663 
    58664 9 models selected 
    58665 
    58666 > select add #2.128
    58667 
    58668 10 models selected 
    58669 
    58670 > select add #2.138
    58671 
    58672 11 models selected 
    58673 
    58674 > select add #2.141
    58675 
    58676 12 models selected 
    58677 Grouped 12 regions 
    58678 
    58679 > select #2.1
    58680 
    58681 1 model selected 
    58682 
    58683 > select add #2.12
    58684 
    58685 2 models selected 
    58686 
    58687 > select add #2.30
    58688 
    58689 3 models selected 
    58690 
    58691 > select add #2.17
    58692 
    58693 4 models selected 
    58694 
    58695 > select add #2.24
    58696 
    58697 5 models selected 
    58698 
    58699 > select add #2.25
    58700 
    58701 6 models selected 
    58702 
    58703 > select add #2.4
    58704 
    58705 7 models selected 
    58706 
    58707 > select add #2.29
    58708 
    58709 8 models selected 
    58710 
    58711 > select add #2.19
    58712 
    58713 9 models selected 
    58714 
    58715 > select add #2.26
    58716 
    58717 10 models selected 
    58718 
    58719 > select add #2.28
    58720 
    58721 11 models selected 
    58722 
    58723 > select add #2.14
    58724 
    58725 12 models selected 
    58726 
    58727 > select add #2.7
    58728 
    58729 13 models selected 
    58730 
    58731 > select add #2.21
    58732 
    58733 14 models selected 
    58734 
    58735 > select add #2.27
    58736 
    58737 15 models selected 
    58738 
    58739 > select add #2.22
    58740 
    58741 16 models selected 
    58742 
    58743 > select add #2.9
    58744 
    58745 17 models selected 
    58746 
    58747 > select add #2.13
    58748 
    58749 18 models selected 
    58750 
    58751 > select add #2.11
    58752 
    58753 19 models selected 
    58754 
    58755 > select add #2.6
    58756 
    58757 20 models selected 
    58758 
    58759 > select add #2.10
    58760 
    58761 21 models selected 
    58762 
    58763 > select add #2.8
    58764 
    58765 22 models selected 
    58766 
    58767 > select add #2.23
    58768 
    58769 23 models selected 
    58770 
    58771 > select add #2.20
    58772 
    58773 24 models selected 
    58774 Grouped 24 regions 
    58775 
    58776 > select clear
    58777 
    58778 > select #2.1
    58779 
    58780 1 model selected 
    58781 Showing 334 region surfaces 
    58782 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked as #14, grid size
    58783 250,250,250, pixel 4.3, shown at step 1, values float32 
    58784 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked, density
    58785 threshold 0.010668 
    58786 Showing 425 region surfaces 
    58787 3855 watershed regions, grouped to 425 regions 
    58788 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked.seg - 425 regions,
    58789 425 surfaces 
    58790 
    58791 > select #2.14
    58792 
    58793 1 model selected 
    58794 
    58795 > select add #2.7
    58796 
    58797 2 models selected 
    58798 
    58799 > select add #2.21
    58800 
    58801 3 models selected 
    58802 
    58803 > select add #2.22
    58804 
    58805 4 models selected 
    58806 
    58807 > select add #2.9
    58808 
    58809 5 models selected 
    58810 
    58811 > select add #2.13
    58812 
    58813 6 models selected 
    58814 
    58815 > select add #2.11
    58816 
    58817 7 models selected 
    58818 
    58819 > select add #2.6
    58820 
    58821 8 models selected 
    58822 
    58823 > select add #2.10
    58824 
    58825 9 models selected 
    58826 
    58827 > select add #2.8
    58828 
    58829 10 models selected 
    58830 
    58831 > select add #2.5
    58832 
    58833 11 models selected 
    58834 
    58835 > select add #2.12
    58836 
    58837 12 models selected 
    58838 
    58839 > select add #2.17
    58840 
    58841 13 models selected 
    58842 
    58843 > select add #2.25
    58844 
    58845 14 models selected 
    58846 
    58847 > select add #2.4
    58848 
    58849 15 models selected 
    58850 
    58851 > select add #2.19
    58852 
    58853 16 models selected 
    58854 
    58855 > select add #2.28
    58856 
    58857 17 models selected 
    58858 Ungrouped to 63 regions 
    58859 
    58860 > select clear
    58861 
    58862 > select #2.478
    58863 
    58864 1 model selected 
    58865 
    58866 > select add #2.477
    58867 
    58868 2 models selected 
    58869 
    58870 > select #2.477
    58871 
    58872 1 model selected 
    58873 Ungrouped to 5 regions 
    58874 
    58875 > select clear
    58876 
    58877 > select #2.7
    58878 
    58879 1 model selected 
    58880 
    58881 > select add #2.478
    58882 
    58883 2 models selected 
    58884 
    58885 > hide #!14 models
    58886 
    58887 Grouped 2 regions 
    58888 
    58889 > select #2.443
    58890 
    58891 1 model selected 
    58892 
    58893 > select add #2.444
    58894 
    58895 2 models selected 
    58896 Ungrouped to 7 regions 
    58897 
    58898 > select clear
    58899 
    58900 > select #2.11
    58901 
    58902 1 model selected 
    58903 
    58904 > select add #2.9
    58905 
    58906 2 models selected 
    58907 
    58908 > select add #2.12
    58909 
    58910 3 models selected 
    58911 
    58912 > select add #2.7
    58913 
    58914 4 models selected 
    58915 Grouped 4 regions 
    58916 
    58917 > select #2.436
    58918 
    58919 1 model selected 
    58920 
    58921 > select #2.435
    58922 
    58923 1 model selected 
    58924 Ungrouped to 7 regions 
    58925 
    58926 > select clear
    58927 
    58928 > select #2.19
    58929 
    58930 1 model selected 
    58931 
    58932 > select add #2.436
    58933 
    58934 2 models selected 
    58935 
    58936 > select add #2.7
    58937 
    58938 3 models selected 
    58939 Grouped 3 regions 
    58940 
    58941 > select #2.486
    58942 
    58943 1 model selected 
    58944 Ungrouped to 4 regions 
    58945 
    58946 > select #2.435
    58947 
    58948 1 model selected 
    58949 
    58950 > select add #2.488
    58951 
    58952 2 models selected 
    58953 
    58954 > select add #2.7
    58955 
    58956 3 models selected 
    58957 Grouped 3 regions 
    58958 
    58959 > select #2.453
    58960 
    58961 1 model selected 
    58962 Ungrouped to 6 regions 
    58963 
    58964 > select clear
    58965 
    58966 > select #2.486
    58967 
    58968 1 model selected 
    58969 
    58970 > select add #2.452
    58971 
    58972 2 models selected 
    58973 
    58974 > select add #2.7
    58975 
    58976 3 models selected 
    58977 Grouped 3 regions 
    58978 
    58979 > select #2.467
    58980 
    58981 1 model selected 
    58982 
    58983 > select add #2.466
    58984 
    58985 2 models selected 
    58986 
    58987 > select add #2.7
    58988 
    58989 3 models selected 
    58990 Grouped 3 regions 
    58991 
    58992 > select #2.469
    58993 
    58994 1 model selected 
    58995 
    58996 > select add #2.470
    58997 
    58998 2 models selected 
    58999 
    59000 > select #2.470
    59001 
    59002 1 model selected 
    59003 Ungrouped to 6 regions 
    59004 
    59005 > select #2.488
    59006 
    59007 1 model selected 
    59008 
    59009 > select add #2.469
    59010 
    59011 2 models selected 
    59012 
    59013 > select add #2.7
    59014 
    59015 3 models selected 
    59016 
    59017 > select clear
    59018 
    59019 > select #2.469
    59020 
    59021 1 model selected 
    59022 
    59023 > select add #2.488
    59024 
    59025 2 models selected 
    59026 Grouped 2 regions 
    59027 
    59028 > select #2.428
    59029 
    59030 1 model selected 
    59031 
    59032 > select add #2.429
    59033 
    59034 2 models selected 
    59035 
    59036 > select #2.429
    59037 
    59038 1 model selected 
    59039 Ungrouped to 4 regions 
    59040 
    59041 > select clear
    59042 
    59043 > select #2.470
    59044 
    59045 1 model selected 
    59046 
    59047 > select add #2.428
    59048 
    59049 2 models selected 
    59050 Grouped 2 regions 
    59051 
    59052 > select #2.475
    59053 
    59054 1 model selected 
    59055 
    59056 > select #2.474
    59057 
    59058 1 model selected 
    59059 Ungrouped to 5 regions 
    59060 
    59061 > select clear
    59062 
    59063 > select #2.493
    59064 
    59065 1 model selected 
    59066 
    59067 > select add #2.475
    59068 
    59069 2 models selected 
    59070 Grouped 2 regions 
    59071 
    59072 > select #2.483
    59073 
    59074 1 model selected 
    59075 Ungrouped to 5 regions 
    59076 
    59077 > select clear
    59078 
    59079 > select #2.494
    59080 
    59081 1 model selected 
    59082 
    59083 > select add #2.482
    59084 
    59085 2 models selected 
    59086 Grouped 2 regions 
    59087 
    59088 > select #2.460
    59089 
    59090 1 model selected 
    59091 
    59092 > select add #2.456
    59093 
    59094 2 models selected 
    59095 
    59096 > select clear
    59097 
    59098 > select #2.456
    59099 
    59100 1 model selected 
    59101 Ungrouped to 6 regions 
    59102 
    59103 > select clear
    59104 
    59105 > select #2.499
    59106 
    59107 1 model selected 
    59108 
    59109 > select add #2.460
    59110 
    59111 2 models selected 
    59112 Grouped 2 regions 
    59113 
    59114 > select clear
    59115 
    59116 > select #2.446
    59117 
    59118 1 model selected 
    59119 
    59120 > select #2.445
    59121 
    59122 1 model selected 
    59123 Ungrouped to 6 regions 
    59124 
    59125 > select clear
    59126 
    59127 > select #2.501
    59128 
    59129 1 model selected 
    59130 
    59131 > select add #2.446
    59132 
    59133 2 models selected 
    59134 Grouped 2 regions 
    59135 
    59136 > select #2.438
    59137 
    59138 1 model selected 
    59139 
    59140 > select add #2.434
    59141 
    59142 2 models selected 
    59143 
    59144 > select add #2.442
    59145 
    59146 3 models selected 
    59147 
    59148 > select add #2.447
    59149 
    59150 4 models selected 
    59151 
    59152 > select add #2.454
    59153 
    59154 5 models selected 
    59155 Ungrouped to 22 regions 
    59156 
    59157 > select clear
    59158 
    59159 > select #2.516
    59160 
    59161 1 model selected 
    59162 
    59163 > select add #2.520
    59164 
    59165 2 models selected 
    59166 
    59167 > select add #2.437
    59168 
    59169 3 models selected 
    59170 Grouped 3 regions 
    59171 
    59172 > select clear
    59173 
    59174 > select add #2.430
    59175 
    59176 1 model selected 
    59177 
    59178 > select add #2.434
    59179 
    59180 2 models selected 
    59181 
    59182 > select add #2.441
    59183 
    59184 3 models selected 
    59185 
    59186 > select add #2.501
    59187 
    59188 4 models selected 
    59189 
    59190 > select add #2.448
    59191 
    59192 5 models selected 
    59193 
    59194 > select add #2.509
    59195 
    59196 6 models selected 
    59197 
    59198 > select add #2.455
    59199 
    59200 7 models selected 
    59201 
    59202 > select add #2.524
    59203 
    59204 8 models selected 
    59205 Grouped 8 regions 
    59206 
    59207 > select clear
    59208 
    59209 > select #2.430
    59210 
    59211 1 model selected 
    59212 
    59213 > select add #2.7
    59214 
    59215 2 models selected 
    59216 
    59217 > select add #2.469
    59218 
    59219 3 models selected 
    59220 
    59221 > select add #2.428
    59222 
    59223 4 models selected 
    59224 
    59225 > select add #2.474
    59226 
    59227 5 models selected 
    59228 
    59229 > select add #2.482
    59230 
    59231 6 models selected 
    59232 
    59233 > select add #2.456
    59234 
    59235 7 models selected 
    59236 
    59237 > select add #2.445
    59238 
    59239 8 models selected 
    59240 
    59241 > select #2.430
    59242 
    59243 1 model selected 
    59244 
    59245 > select #2.428
    59246 
    59247 1 model selected 
    59248 
    59249 > select clear
    59250 
    59251 > select #2.428
    59252 
    59253 1 model selected 
    59254 
    59255 > select add #2.7
    59256 
    59257 2 models selected 
    59258 
    59259 > select add #2.482
    59260 
    59261 3 models selected 
    59262 
    59263 > select add #2.456
    59264 
    59265 4 models selected 
    59266 
    59267 > select add #2.445
    59268 
    59269 5 models selected 
    59270 
    59271 > select add #2.430
    59272 
    59273 6 models selected 
    59274 Ungrouped to 19 regions 
    59275 
    59276 > select #2.527
    59277 
    59278 1 model selected 
    59279 
    59280 > select add #2.501
    59281 
    59282 2 models selected 
    59283 
    59284 > select add #2.524
    59285 
    59286 3 models selected 
    59287 
    59288 > select add #2.528
    59289 
    59290 4 models selected 
    59291 
    59292 > select add #2.516
    59293 
    59294 5 models selected 
    59295 
    59296 > select add #2.434
    59297 
    59298 6 models selected 
    59299 Ungrouped to 22 regions 
    59300 Ungrouped to 18 regions 
    59301 
    59302 > select clear
    59303 
    59304 > select #2.546
    59305 
    59306 1 model selected 
    59307 
    59308 > select add #2.553
    59309 
    59310 2 models selected 
    59311 
    59312 > select add #2.456
    59313 
    59314 3 models selected 
    59315 
    59316 > select add #2.541
    59317 
    59318 4 models selected 
    59319 
    59320 > select add #2.533
    59321 
    59322 5 models selected 
    59323 
    59324 > select add #2.536
    59325 
    59326 6 models selected 
    59327 
    59328 > select add #2.534
    59329 
    59330 7 models selected 
    59331 
    59332 > select add #2.537
    59333 
    59334 8 models selected 
    59335 
    59336 > select add #2.524
    59337 
    59338 9 models selected 
    59339 
    59340 > select add #2.528
    59341 
    59342 10 models selected 
    59343 
    59344 > select add #2.535
    59345 
    59346 11 models selected 
    59347 
    59348 > select add #2.545
    59349 
    59350 12 models selected 
    59351 
    59352 > select add #2.549
    59353 
    59354 13 models selected 
    59355 
    59356 > select add #2.554
    59357 
    59358 14 models selected 
    59359 
    59360 > select add #2.555
    59361 
    59362 15 models selected 
    59363 
    59364 > select add #2.556
    59365 
    59366 16 models selected 
    59367 
    59368 > select add #2.548
    59369 
    59370 17 models selected 
    59371 
    59372 > select add #2.445
    59373 
    59374 18 models selected 
    59375 Grouped 18 regions 
    59376 Ungrouped to 18 regions 
    59377 
    59378 > select clear
    59379 
    59380 > select #2.430
    59381 
    59382 1 model selected 
    59383 Ungrouped to 0 regions 
    59384 
    59385 > select #2.539
    59386 
    59387 1 model selected 
    59388 Ungrouped to 0 regions 
    59389 
    59390 > select #2.524
    59391 
    59392 1 model selected 
    59393 
    59394 > select add #2.538
    59395 
    59396 2 models selected 
    59397 
    59398 > select add #2.535
    59399 
    59400 3 models selected 
    59401 
    59402 > select add #2.536
    59403 
    59404 4 models selected 
    59405 
    59406 > select add #2.543
    59407 
    59408 5 models selected 
    59409 
    59410 > select add #2.534
    59411 
    59412 6 models selected 
    59413 
    59414 > select add #2.545
    59415 
    59416 7 models selected 
    59417 
    59418 > select add #2.546
    59419 
    59420 8 models selected 
    59421 
    59422 > select add #2.541
    59423 
    59424 9 models selected 
    59425 Drag select of 3903, 24 of 4808 triangles, 1426, 22 of 2176 triangles 
    59426 
    59427 > select clear
    59428 
    59429 > select #2.544
    59430 
    59431 1 model selected 
    59432 
    59433 > select add #2.456
    59434 
    59435 2 models selected 
    59436 
    59437 > select add #2.482
    59438 
    59439 3 models selected 
    59440 
    59441 > select #2.445
    59442 
    59443 1 model selected 
    59444 
    59445 > select add #2.532
    59446 
    59447 2 models selected 
    59448 
    59449 > select add #2.537
    59450 
    59451 3 models selected 
    59452 
    59453 > select add #2.533
    59454 
    59455 4 models selected 
    59456 
    59457 > select add #2.430
    59458 
    59459 5 models selected 
    59460 
    59461 > select clear
    59462 
    59463 > select #2.428
    59464 
    59465 1 model selected 
    59466 
    59467 > select add #2.528
    59468 
    59469 2 models selected 
    59470 
    59471 > select add #2.542
    59472 
    59473 3 models selected 
    59474 
    59475 > select clear
    59476 
    59477 > select #2.539
    59478 
    59479 1 model selected 
    59480 Ungrouped to 0 regions 
    59481 
    59482 > select clear
    59483 
    59484 Drag select of 5545, 5547, 4834, 427, 4420, 4550, 4829, 4840, 3903, 5543,
    59485 45241 of 45264 triangles, 4842, 3920, 4547, 4259, 3891, 269, 603, 443, 5912 of
    59486 6428 triangles, 592, 472, 3955, 418, 559, 346, 520, 379, 431, 365 
    59487 Grouped 28 regions 
    59488 
    59489 > select clear
    59490 
    59491 Showing 523 region surfaces 
    59492 
    59493 > select #2.7
    59494 
    59495 1 model selected 
    59496 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #15, grid
    59497 size 250,250,250, pixel 4.3, shown at step 1, values float32 
    59498 
    59499 The cached device pixel ratio value was stale on window expose. Please file a
    59500 QTBUG which explains how to reproduce. 
    59501 
    59502 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/PilM.mrc models #15
    59503 
    59504 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked as #16, grid
    59505 size 250,250,250, pixel 4.3, shown at step 1, values float32 
    59506 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    59507 threshold 0.010668 
    59508 Showing 427 region surfaces 
    59509 3773 watershed regions, grouped to 427 regions 
    59510 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 427
    59511 regions, 427 surfaces 
    59512 
    59513 > hide #!15 models
    59514 
    59515 > hide #!16 models
    59516 
    59517 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked, density
    59518 threshold 0.010668 
    59519 Showing 427 region surfaces 
    59520 3773 watershed regions, grouped to 427 regions 
    59521 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg - 427
    59522 regions, 427 surfaces 
    59523 
    59524 > select #2.16
    59525 
    59526 1 model selected 
    59527 Ungrouped to 6 regions 
    59528 Ungrouped to 13 regions 
    59529 
    59530 > select #2.438
    59531 
    59532 1 model selected 
    59533 
    59534 > select #2.436
    59535 
    59536 1 model selected 
    59537 
    59538 > select add #2.437
    59539 
    59540 2 models selected 
    59541 
    59542 > select add #2.439
    59543 
    59544 3 models selected 
    59545 
    59546 > select add #2.442
    59547 
    59548 4 models selected 
    59549 
    59550 > select add #2.440
    59551 
    59552 5 models selected 
    59553 
    59554 > select add #2.441
    59555 
    59556 6 models selected 
    59557 
    59558 > select add #2.443
    59559 
    59560 7 models selected 
    59561 
    59562 > select add #2.435
    59563 
    59564 8 models selected 
    59565 
    59566 > select add #2.444
    59567 
    59568 9 models selected 
    59569 Grouped 9 regions 
    59570 
    59571 > select clear
    59572 
    59573 > select #2.438
    59574 
    59575 1 model selected 
    59576 
    59577 > select add #2.430
    59578 
    59579 2 models selected 
    59580 
    59581 > select clear
    59582 
    59583 > select #2.108
    59584 
    59585 1 model selected 
    59586 
    59587 > select add #2.85
    59588 
    59589 2 models selected 
    59590 
    59591 > select add #2.133
    59592 
    59593 3 models selected 
    59594 
    59595 > select add #2.97
    59596 
    59597 4 models selected 
    59598 
    59599 > select add #2.292
    59600 
    59601 5 models selected 
    59602 
    59603 > select add #2.103
    59604 
    59605 6 models selected 
    59606 
    59607 > select add #2.223
    59608 
    59609 7 models selected 
    59610 
    59611 > select add #2.129
    59612 
    59613 8 models selected 
    59614 
    59615 > select add #2.428
    59616 
    59617 9 models selected 
    59618 
    59619 > select add #2.16
    59620 
    59621 10 models selected 
    59622 
    59623 > select add #2.434
    59624 
    59625 11 models selected 
    59626 
    59627 > select add #2.445
    59628 
    59629 12 models selected 
    59630 Grouped 12 regions 
    59631 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    59632 #17, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    59633 
    59634 The cached device pixel ratio value was stale on window expose. Please file a
    59635 QTBUG which explains how to reproduce. 
    59636 
    59637 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Exp_ATP.mrc models #17
    59638 
    59639 Opened L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    59640 #18, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    59641 Segmenting L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    59642 density threshold 0.010668 
    59643 Showing 420 region surfaces 
    59644 3728 watershed regions, grouped to 420 regions 
    59645 Showing L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    59646 - 420 regions, 420 surfaces 
    59647 
    59648 > hide #!17 models
    59649 
    59650 > hide #!18 models
    59651 
    59652 > select #2.98
    59653 
    59654 1 model selected 
    59655 
    59656 > select add #2.66
    59657 
    59658 2 models selected 
    59659 
    59660 > select add #2.91
    59661 
    59662 3 models selected 
    59663 
    59664 > select add #2.83
    59665 
    59666 4 models selected 
    59667 
    59668 > select add #2.58
    59669 
    59670 5 models selected 
    59671 
    59672 > select add #2.148
    59673 
    59674 6 models selected 
    59675 
    59676 > select add #2.94
    59677 
    59678 7 models selected 
    59679 
    59680 > select add #2.245
    59681 
    59682 8 models selected 
    59683 
    59684 > select add #2.248
    59685 
    59686 9 models selected 
    59687 
    59688 > select add #2.99
    59689 
    59690 10 models selected 
    59691 
    59692 > select add #2.84
    59693 
    59694 11 models selected 
    59695 Drag select of 5205, 27 of 18376 triangles, 5023, 42 of 14808 triangles, 5165,
    59696 31 of 13920 triangles, 4664, 32 of 4880 triangles, 5221, 45 of 6280 triangles 
    59697 
    59698 > select add #2.206
    59699 
    59700 15 models selected 
    59701 
    59702 > select add #2.102
    59703 
    59704 16 models selected 
    59705 
    59706 > select add #2.162
    59707 
    59708 17 models selected 
    59709 
    59710 > select add #2.103
    59711 
    59712 18 models selected 
    59713 
    59714 > select add #2.125
    59715 
    59716 19 models selected 
    59717 
    59718 > select add #2.170
    59719 
    59720 20 models selected 
    59721 
    59722 > select add #2.97
    59723 
    59724 21 models selected 
    59725 
    59726 > select add #2.115
    59727 
    59728 22 models selected 
    59729 
    59730 > select add #2.126
    59731 
    59732 23 models selected 
    59733 
    59734 > select add #2.110
    59735 
    59736 24 models selected 
    59737 
    59738 > select add #2.70
    59739 
    59740 25 models selected 
    59741 
    59742 > select add #2.123
    59743 
    59744 26 models selected 
    59745 
    59746 > select add #2.173
    59747 
    59748 27 models selected 
    59749 
    59750 > select add #2.29
    59751 
    59752 28 models selected 
    59753 
    59754 > select add #2.121
    59755 
    59756 29 models selected 
    59757 Grouped 29 regions 
    59758 
    59759 > select add #2.84
    59760 
    59761 2 models selected 
    59762 
    59763 > select add #2.222
    59764 
    59765 3 models selected 
    59766 
    59767 > select add #2.280
    59768 
    59769 4 models selected 
    59770 Grouped 4 regions 
    59771 
    59772 > select #2.161
    59773 
    59774 1 model selected 
    59775 
    59776 > select add #2.163
    59777 
    59778 2 models selected 
    59779 
    59780 > select add #2.152
    59781 
    59782 3 models selected 
    59783 
    59784 > select add #2.154
    59785 
    59786 4 models selected 
    59787 
    59788 > select add #2.153
    59789 
    59790 5 models selected 
    59791 
    59792 > select add #2.155
    59793 
    59794 6 models selected 
    59795 Ungrouped to 13 regions 
    59796 Ungrouped to 2 regions 
    59797 
    59798 > select #2.29
    59799 
    59800 1 model selected 
    59801 Showing 397 region surfaces 
    59802 
    59803 > select clear
    59804 
    59805 > select #2.29
    59806 
    59807 1 model selected 
    59808 
    59809 > select add #2.246
    59810 
    59811 2 models selected 
    59812 Grouped 2 regions 
    59813 
    59814 > select add #2.196
    59815 
    59816 2 models selected 
    59817 
    59818 > select add #2.98
    59819 
    59820 3 models selected 
    59821 
    59822 > select add #2.97
    59823 
    59824 4 models selected 
    59825 
    59826 > select add #2.221
    59827 
    59828 5 models selected 
    59829 
    59830 > select add #2.94
    59831 
    59832 6 models selected 
    59833 
    59834 > select add #2.91
    59835 
    59836 7 models selected 
    59837 
    59838 > select add #2.70
    59839 
    59840 8 models selected 
    59841 
    59842 > select add #2.66
    59843 
    59844 9 models selected 
    59845 
    59846 > select add #2.102
    59847 
    59848 10 models selected 
    59849 
    59850 > select add #2.99
    59851 
    59852 11 models selected 
    59853 
    59854 > select add #2.165
    59855 
    59856 12 models selected 
    59857 
    59858 > select add #2.157
    59859 
    59860 13 models selected 
    59861 
    59862 > select add #2.132
    59863 
    59864 14 models selected 
    59865 
    59866 > select add #2.156
    59867 
    59868 15 models selected 
    59869 
    59870 > select add #2.151
    59871 
    59872 16 models selected 
    59873 
    59874 > select add #2.150
    59875 
    59876 17 models selected 
    59877 
    59878 > select add #2.129
    59879 
    59880 18 models selected 
    59881 
    59882 > select add #2.172
    59883 
    59884 19 models selected 
    59885 
    59886 > select add #2.164
    59887 
    59888 20 models selected 
    59889 
    59890 > select add #2.167
    59891 
    59892 21 models selected 
    59893 
    59894 > select add #2.160
    59895 
    59896 22 models selected 
    59897 
    59898 > select add #2.46
    59899 
    59900 23 models selected 
    59901 
    59902 > select add #2.103
    59903 
    59904 24 models selected 
    59905 
    59906 > select add #2.110
    59907 
    59908 25 models selected 
    59909 
    59910 > select add #2.87
    59911 
    59912 26 models selected 
    59913 
    59914 > select add #2.84
    59915 
    59916 27 models selected 
    59917 
    59918 > select add #2.215
    59919 
    59920 28 models selected 
    59921 
    59922 > select add #2.238
    59923 
    59924 29 models selected 
    59925 
    59926 > select add #2.242
    59927 
    59928 30 models selected 
    59929 
    59930 > select add #2.201
    59931 
    59932 31 models selected 
    59933 
    59934 > select add #2.219
    59935 
    59936 32 models selected 
    59937 
    59938 > select add #2.202
    59939 
    59940 33 models selected 
    59941 
    59942 > select add #2.226
    59943 
    59944 34 models selected 
    59945 
    59946 > select add #2.229
    59947 
    59948 35 models selected 
    59949 
    59950 > select add #2.195
    59951 
    59952 36 models selected 
    59953 
    59954 > select add #2.203
    59955 
    59956 37 models selected 
    59957 
    59958 > select add #2.218
    59959 
    59960 38 models selected 
    59961 
    59962 > select add #2.225
    59963 
    59964 39 models selected 
    59965 
    59966 > select add #2.217
    59967 
    59968 40 models selected 
    59969 
    59970 > select add #2.209
    59971 
    59972 41 models selected 
    59973 
    59974 > select add #2.239
    59975 
    59976 42 models selected 
    59977 Grouped 42 regions 
    59978 
    59979 > select clear
    59980 
    59981 > select #2.68
    59982 
    59983 1 model selected 
    59984 Ungrouped to 2 regions 
    59985 Ungrouped to 6 regions 
    59986 
    59987 > select #2.70
    59988 
    59989 1 model selected 
    59990 
    59991 > select add #2.87
    59992 
    59993 2 models selected 
    59994 Grouped 2 regions 
    59995 
    59996 > select #2.63
    59997 
    59998 1 model selected 
    59999 
    60000 > select add #2.69
    60001 
    60002 2 models selected 
    60003 
    60004 > select add #2.52
    60005 
    60006 3 models selected 
    60007 
    60008 > select add #2.39
    60009 
    60010 4 models selected 
    60011 
    60012 > select add #2.54
    60013 
    60014 5 models selected 
    60015 
    60016 > select add #2.77
    60017 
    60018 6 models selected 
    60019 
    60020 > select add #2.83
    60021 
    60022 7 models selected 
    60023 
    60024 The cached device pixel ratio value was stale on window expose. Please file a
    60025 QTBUG which explains how to reproduce. 
    60026 
    60027 > select add #2.59
    60028 
    60029 8 models selected 
    60030 
    60031 > select subtract #2.83
    60032 
    60033 7 models selected 
    60034 
    60035 > select add #2.37
    60036 
    60037 8 models selected 
    60038 
    60039 > select add #2.76
    60040 
    60041 9 models selected 
    60042 
    60043 > select add #2.62
    60044 
    60045 10 models selected 
    60046 
    60047 > select add #2.65
    60048 
    60049 11 models selected 
    60050 
    60051 > select add #2.53
    60052 
    60053 12 models selected 
    60054 
    60055 > select add #2.67
    60056 
    60057 13 models selected 
    60058 
    60059 > select add #2.56
    60060 
    60061 14 models selected 
    60062 
    60063 > select add #2.64
    60064 
    60065 15 models selected 
    60066 
    60067 > select add #2.72
    60068 
    60069 16 models selected 
    60070 
    60071 > select add #2.46
    60072 
    60073 17 models selected 
    60074 Ungrouped to 46 regions 
    60075 
    60076 > select subtract #2.157
    60077 
    60078 45 models selected 
    60079 
    60080 > select subtract #2.160
    60081 
    60082 44 models selected 
    60083 Ungrouped to 99 regions 
    60084 Ungrouped to 116 regions 
    60085 Ungrouped to 29 regions 
    60086 Ungrouped to 0 regions 
    60087 
    60088 > select #2.148
    60089 
    60090 1 model selected 
    60091 
    60092 > select add #2.565
    60093 
    60094 2 models selected 
    60095 
    60096 > select add #2.566
    60097 
    60098 3 models selected 
    60099 
    60100 > select add #2.440
    60101 
    60102 4 models selected 
    60103 
    60104 > select add #2.439
    60105 
    60106 5 models selected 
    60107 
    60108 > select add #2.157
    60109 
    60110 6 models selected 
    60111 
    60112 > select add #2.160
    60113 
    60114 7 models selected 
    60115 
    60116 > select add #2.115
    60117 
    60118 8 models selected 
    60119 
    60120 > select add #2.123
    60121 
    60122 9 models selected 
    60123 
    60124 > select add #2.126
    60125 
    60126 10 models selected 
    60127 
    60128 > select add #2.53
    60129 
    60130 11 models selected 
    60131 
    60132 > select add #2.52
    60133 
    60134 12 models selected 
    60135 
    60136 > select add #2.422
    60137 
    60138 13 models selected 
    60139 
    60140 > select add #2.568
    60141 
    60142 14 models selected 
    60143 
    60144 > select add #2.567
    60145 
    60146 15 models selected 
    60147 
    60148 > select add #2.91
    60149 
    60150 16 models selected 
    60151 
    60152 > select add #2.84
    60153 
    60154 17 models selected 
    60155 
    60156 > select add #2.221
    60157 
    60158 18 models selected 
    60159 
    60160 > select add #2.226
    60161 
    60162 19 models selected 
    60163 
    60164 > select add #2.129
    60165 
    60166 20 models selected 
    60167 
    60168 > select add #2.56
    60169 
    60170 21 models selected 
    60171 
    60172 > select add #2.54
    60173 
    60174 22 models selected 
    60175 
    60176 > select add #2.72
    60177 
    60178 23 models selected 
    60179 
    60180 > select add #2.480
    60181 
    60182 24 models selected 
    60183 
    60184 > select add #2.425
    60185 
    60186 25 models selected 
    60187 
    60188 > select add #2.427
    60189 
    60190 26 models selected 
    60191 
    60192 > select add #2.520
    60193 
    60194 27 models selected 
    60195 
    60196 > select add #2.522
    60197 
    60198 28 models selected 
    60199 
    60200 > select add #2.426
    60201 
    60202 29 models selected 
    60203 
    60204 > select add #2.69
    60205 
    60206 30 models selected 
    60207 
    60208 > select add #2.576
    60209 
    60210 31 models selected 
    60211 
    60212 > select add #2.452
    60213 
    60214 32 models selected 
    60215 
    60216 > select add #2.451
    60217 
    60218 33 models selected 
    60219 
    60220 > select add #2.573
    60221 
    60222 34 models selected 
    60223 
    60224 > select add #2.87
    60225 
    60226 35 models selected 
    60227 
    60228 > select add #2.99
    60229 
    60230 36 models selected 
    60231 
    60232 > select add #2.575
    60233 
    60234 37 models selected 
    60235 
    60236 > select add #2.97
    60237 
    60238 38 models selected 
    60239 
    60240 > select add #2.436
    60241 
    60242 39 models selected 
    60243 
    60244 > select add #2.434
    60245 
    60246 40 models selected 
    60247 
    60248 > select add #2.433
    60249 
    60250 41 models selected 
    60251 
    60252 > select add #2.457
    60253 
    60254 42 models selected 
    60255 
    60256 > select add #2.458
    60257 
    60258 43 models selected 
    60259 
    60260 > select add #2.435
    60261 
    60262 44 models selected 
    60263 
    60264 > select add #2.500
    60265 
    60266 45 models selected 
    60267 
    60268 > select add #2.498
    60269 
    60270 46 models selected 
    60271 
    60272 > select add #2.531
    60273 
    60274 47 models selected 
    60275 
    60276 > select add #2.532
    60277 
    60278 48 models selected 
    60279 
    60280 > select add #2.540
    60281 
    60282 49 models selected 
    60283 
    60284 > select add #2.499
    60285 
    60286 50 models selected 
    60287 
    60288 > select add #2.239
    60289 
    60290 51 models selected 
    60291 
    60292 > select add #2.242
    60293 
    60294 52 models selected 
    60295 
    60296 > select add #2.556
    60297 
    60298 53 models selected 
    60299 
    60300 > select add #2.557
    60301 
    60302 54 models selected 
    60303 
    60304 > select add #2.558
    60305 
    60306 55 models selected 
    60307 
    60308 > select add #2.245
    60309 
    60310 56 models selected 
    60311 
    60312 > select add #2.247
    60313 
    60314 57 models selected 
    60315 
    60316 > select add #2.544
    60317 
    60318 58 models selected 
    60319 
    60320 > select add #2.543
    60321 
    60322 59 models selected 
    60323 
    60324 > select add #2.225
    60325 
    60326 60 models selected 
    60327 
    60328 > select add #2.454
    60329 
    60330 61 models selected 
    60331 
    60332 > select add #2.456
    60333 
    60334 62 models selected 
    60335 
    60336 > select add #2.550
    60337 
    60338 63 models selected 
    60339 
    60340 > select add #2.536
    60341 
    60342 64 models selected 
    60343 
    60344 > select add #2.508
    60345 
    60346 65 models selected 
    60347 
    60348 > select add #2.83
    60349 
    60350 66 models selected 
    60351 
    60352 > select add #2.535
    60353 
    60354 67 models selected 
    60355 
    60356 > select add #2.475
    60357 
    60358 68 models selected 
    60359 
    60360 > select add #2.529
    60361 
    60362 69 models selected 
    60363 
    60364 > select add #2.509
    60365 
    60366 70 models selected 
    60367 
    60368 > select add #2.470
    60369 
    60370 71 models selected 
    60371 
    60372 > select add #2.548
    60373 
    60374 72 models selected 
    60375 
    60376 > select add #2.443
    60377 
    60378 73 models selected 
    60379 
    60380 > select add #2.467
    60381 
    60382 74 models selected 
    60383 
    60384 > select add #2.547
    60385 
    60386 75 models selected 
    60387 
    60388 > select add #2.441
    60389 
    60390 76 models selected 
    60391 
    60392 > select add #2.569
    60393 
    60394 77 models selected 
    60395 
    60396 > select add #2.570
    60397 
    60398 78 models selected 
    60399 
    60400 > select add #2.514
    60401 
    60402 79 models selected 
    60403 
    60404 > select add #2.515
    60405 
    60406 80 models selected 
    60407 
    60408 > select add #2.564
    60409 
    60410 81 models selected 
    60411 
    60412 > select add #2.563
    60413 
    60414 82 models selected 
    60415 
    60416 > select add #2.485
    60417 
    60418 83 models selected 
    60419 
    60420 > select add #2.463
    60421 
    60422 84 models selected 
    60423 
    60424 > select subtract #2.463
    60425 
    60426 83 models selected 
    60427 
    60428 > select add #2.463
    60429 
    60430 84 models selected 
    60431 
    60432 > select add #2.201
    60433 
    60434 85 models selected 
    60435 
    60436 > select add #2.76
    60437 
    60438 86 models selected 
    60439 
    60440 > select add #2.219
    60441 
    60442 87 models selected 
    60443 
    60444 > select add #2.196
    60445 
    60446 88 models selected 
    60447 
    60448 > select add #2.203
    60449 
    60450 89 models selected 
    60451 
    60452 > select add #2.154
    60453 
    60454 90 models selected 
    60455 
    60456 > select add #2.153
    60457 
    60458 91 models selected 
    60459 
    60460 > select add #2.161
    60461 
    60462 92 models selected 
    60463 
    60464 > select add #2.165
    60465 
    60466 93 models selected 
    60467 
    60468 > select add #2.561
    60469 
    60470 94 models selected 
    60471 
    60472 > select add #2.164
    60473 
    60474 95 models selected 
    60475 
    60476 > select add #2.562
    60477 
    60478 96 models selected 
    60479 
    60480 > select add #2.445
    60481 
    60482 97 models selected 
    60483 
    60484 > select add #2.503
    60485 
    60486 98 models selected 
    60487 
    60488 > select add #2.502
    60489 
    60490 99 models selected 
    60491 
    60492 > select add #2.504
    60493 
    60494 100 models selected 
    60495 
    60496 > select add #2.492
    60497 
    60498 101 models selected 
    60499 
    60500 > select add #2.491
    60501 
    60502 102 models selected 
    60503 
    60504 > select add #2.430
    60505 
    60506 103 models selected 
    60507 
    60508 > select add #2.494
    60509 
    60510 104 models selected 
    60511 
    60512 > select add #2.493
    60513 
    60514 105 models selected 
    60515 Grouped 105 regions 
    60516 
    60517 > select add #2.206
    60518 
    60519 2 models selected 
    60520 Grouped 2 regions 
    60521 Showing 446 region surfaces 
    60522 
    60523 > select add #2.29
    60524 
    60525 2 models selected 
    60526 
    60527 > select #2.29
    60528 
    60529 1 model selected 
    60530 
    60531 > select clear
    60532 
    60533 > select #2.29
    60534 
    60535 1 model selected 
    60536 Ungrouped to 42 regions 
    60537 Ungrouped to 32 regions 
    60538 Ungrouped to 8 regions 
    60539 
    60540 > select #2.91
    60541 
    60542 1 model selected 
    60543 Ungrouped to 29 regions 
    60544 
    60545 > select clear
    60546 
    60547 > select #2.242
    60548 
    60549 1 model selected 
    60550 Ungrouped to 5 regions 
    60551 
    60552 > select #2.520
    60553 
    60554 1 model selected 
    60555 
    60556 > select add #2.512
    60557 
    60558 2 models selected 
    60559 
    60560 > select add #2.514
    60561 
    60562 3 models selected 
    60563 
    60564 > select add #2.91
    60565 
    60566 4 models selected 
    60567 
    60568 > select add #2.515
    60569 
    60570 5 models selected 
    60571 
    60572 > select clear
    60573 
    60574 Drag select of 5353, 142720 of 176292 triangles, 432, 181, 426, 442, 439, 175,
    60575 160, 493, 185, 438, 190, 191, 188, 166, 174, 490, 434, 492, 437, 186, 146,
    60576 424, 169, 441, 155, 407, 421, 5819 of 6528 triangles, 440, 192, 498, 478, 419,
    60577 427, 425, 483, 4567 of 4816 triangles, 182, 481, 416, 418, 463, 406, 165, 467,
    60578 388, 839, 433, 431, 414, 413, 472, 2753 of 3224 triangles, 417, 4606 of 4792
    60579 triangles, 164, 458, 462, 408, 409, 405, 5023, 284, 5035, 516, 411, 6018 of
    60580 6216 triangles, 210, 95, 5047, 5162, 5013, 4664, 5157, 12982 of 13792
    60581 triangles, 4174, 5044, 5076, 5126, 4945, 5276, 10913 of 11100 triangles, 5150,
    60582 5165, 5148, 5031, 9816 of 10084 triangles, 17, 5129, 5160, 5086, 4681, 5757 of
    60583 5896 triangles, 5022, 8840 of 8924 triangles, 4742, 5151, 5281, 5164, 4134,
    60584 5029 
    60585 Grouped 92 regions 
    60586 
    60587 > select clear
    60588 
    60589 > select #2.29
    60590 
    60591 1 model selected 
    60592 Showing 451 region surfaces 
    60593 
    60594 > select clear
    60595 
    60596 > select #2.29
    60597 
    60598 1 model selected 
    60599 Showing 451 region surfaces 
    60600 Opened
    60601 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    60602 #19, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    60603 
    60604 The cached device pixel ratio value was stale on window expose. Please file a
    60605 QTBUG which explains how to reproduce. 
    60606 
    60607 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/C-ring-stators.mrc
    60608 > models #19
    60609 
    60610 Opened
    60611 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked as
    60612 #20, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    60613 Segmenting
    60614 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    60615 density threshold 0.010668 
    60616 Showing 355 region surfaces 
    60617 3376 watershed regions, grouped to 355 regions 
    60618 Showing
    60619 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    60620 - 355 regions, 355 surfaces 
    60621 
    60622 > hide #!19 models
    60623 
    60624 > hide #!20 models
    60625 
    60626 > select #2.156
    60627 
    60628 1 model selected 
    60629 
    60630 > select add #2.196
    60631 
    60632 2 models selected 
    60633 
    60634 > select add #2.203
    60635 
    60636 3 models selected 
    60637 
    60638 > select add #2.142
    60639 
    60640 4 models selected 
    60641 
    60642 > select add #2.153
    60643 
    60644 5 models selected 
    60645 
    60646 > select add #2.158
    60647 
    60648 6 models selected 
    60649 Drag select of 4775, 7 of 20572 triangles, 4628, 7 of 7720 triangles, 4726, 12
    60650 of 5384 triangles, 4305, 16 of 5224 triangles 
    60651 Drag select of 4695, 30 of 71560 triangles, 4762, 10 of 20120 triangles, 4713,
    60652 4 of 19980 triangles, 4560, 7 of 7840 triangles 
    60653 
    60654 > select #2.158
    60655 
    60656 1 model selected 
    60657 
    60658 > select add #2.141
    60659 
    60660 2 models selected 
    60661 
    60662 > select add #2.143
    60663 
    60664 3 models selected 
    60665 
    60666 > select add #2.148
    60667 
    60668 4 models selected 
    60669 
    60670 > select add #2.164
    60671 
    60672 5 models selected 
    60673 
    60674 > select add #2.175
    60675 
    60676 6 models selected 
    60677 
    60678 > select add #2.157
    60679 
    60680 7 models selected 
    60681 
    60682 > select add #2.169
    60683 
    60684 8 models selected 
    60685 
    60686 > select add #2.167
    60687 
    60688 9 models selected 
    60689 
    60690 > select add #2.153
    60691 
    60692 10 models selected 
    60693 
    60694 > select add #2.174
    60695 
    60696 11 models selected 
    60697 
    60698 > select add #2.142
    60699 
    60700 12 models selected 
    60701 
    60702 > select add #2.166
    60703 
    60704 13 models selected 
    60705 
    60706 > select add #2.203
    60707 
    60708 14 models selected 
    60709 
    60710 > select add #2.196
    60711 
    60712 15 models selected 
    60713 
    60714 > select add #2.168
    60715 
    60716 16 models selected 
    60717 
    60718 > select add #2.156
    60719 
    60720 17 models selected 
    60721 
    60722 > select add #2.152
    60723 
    60724 18 models selected 
    60725 
    60726 > select add #2.146
    60727 
    60728 19 models selected 
    60729 
    60730 > select add #2.173
    60731 
    60732 20 models selected 
    60733 Drag select of 4733, 17 of 21208 triangles, 4603, 18 of 7732 triangles, 4104,
    60734 19 of 5384 triangles 
    60735 
    60736 > select add #2.171
    60737 
    60738 24 models selected 
    60739 
    60740 > select add #2.135
    60741 
    60742 25 models selected 
    60743 
    60744 > select subtract #2.30
    60745 
    60746 24 models selected 
    60747 
    60748 > select add #2.162
    60749 
    60750 25 models selected 
    60751 
    60752 > select add #2.160
    60753 
    60754 26 models selected 
    60755 
    60756 > select add #2.159
    60757 
    60758 27 models selected 
    60759 
    60760 > select add #2.150
    60761 
    60762 28 models selected 
    60763 
    60764 > select add #2.149
    60765 
    60766 29 models selected 
    60767 
    60768 > select add #2.176
    60769 
    60770 30 models selected 
    60771 
    60772 > select add #2.165
    60773 
    60774 31 models selected 
    60775 
    60776 > select add #2.151
    60777 
    60778 32 models selected 
    60779 
    60780 > select add #2.147
    60781 
    60782 33 models selected 
    60783 
    60784 > select add #2.161
    60785 
    60786 34 models selected 
    60787 
    60788 > select add #2.163
    60789 
    60790 35 models selected 
    60791 
    60792 > select add #2.155
    60793 
    60794 36 models selected 
    60795 Grouped 36 regions 
    60796 
    60797 > select clear
    60798 
    60799 > select #2.118
    60800 
    60801 1 model selected 
    60802 
    60803 > select #2.118
    60804 
    60805 1 model selected 
    60806 Ungrouped to 36 regions 
    60807 
    60808 > select subtract #2.196
    60809 
    60810 35 models selected 
    60811 Grouped 35 regions 
    60812 Showing 321 region surfaces 
    60813 Opened
    60814 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    60815 as #21, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    60816 
    60817 The cached device pixel ratio value was stale on window expose. Please file a
    60818 QTBUG which explains how to reproduce. 
    60819 
    60820 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/C-Vring.mrc models #21
    60821 
    60822 Opened
    60823 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    60824 as #22, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    60825 Segmenting
    60826 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    60827 density threshold 0.010668 
    60828 Showing 320 region surfaces 
    60829 3316 watershed regions, grouped to 320 regions 
    60830 Showing
    60831 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    60832 - 320 regions, 320 surfaces 
    60833 
    60834 > hide #!21 models
    60835 
    60836 > hide #!22 models
    60837 
    60838 > select #2.18
    60839 
    60840 1 model selected 
    60841 
    60842 > select add #2.9
    60843 
    60844 2 models selected 
    60845 
    60846 > select #2.58
    60847 
    60848 1 model selected 
    60849 
    60850 > select add #2.63
    60851 
    60852 2 models selected 
    60853 
    60854 > select add #2.62
    60855 
    60856 3 models selected 
    60857 
    60858 > select add #2.61
    60859 
    60860 4 models selected 
    60861 
    60862 > select clear
    60863 
    60864 Drag select of 2, 1 
    60865 Drag select of 4496, 32 of 4668 triangles, 4666, 3350 of 3396 triangles, 4667,
    60866 4619, 4472, 153 of 1580 triangles, 4515, 1050 of 1208 triangles, 4676, 496 of
    60867 704 triangles, 4278, 467 of 684 triangles, 2219, 3675, 176 of 440 triangles,
    60868 2231 
    60869 
    60870 > select subtract #2.174
    60871 
    60872 12 models selected 
    60873 
    60874 > select add #2.174
    60875 
    60876 13 models selected 
    60877 
    60878 > select add #2.178
    60879 
    60880 14 models selected 
    60881 
    60882 > select add #2.179
    60883 
    60884 15 models selected 
    60885 Drag select of 4698, 3411 of 3552 triangles, 4385, 4697, 2164 of 3016
    60886 triangles, 4726, 1744 of 2292 triangles, 2211, 2213 
    60887 Drag select of 4668, 2949 of 3596 triangles, 4666, 88 of 3396 triangles 
    60888 
    60889 > select add #2.189
    60890 
    60891 22 models selected 
    60892 
    60893 > select add #2.234
    60894 
    60895 23 models selected 
    60896 
    60897 > select add #2.199
    60898 
    60899 24 models selected 
    60900 
    60901 > select add #2.207
    60902 
    60903 25 models selected 
    60904 
    60905 > select add #2.224
    60906 
    60907 26 models selected 
    60908 
    60909 > select add #2.253
    60910 
    60911 27 models selected 
    60912 Drag select of 4598, 296 of 94920 triangles, 4597, 315 of 71560 triangles,
    60913 4737, 104 of 992 triangles, 4611, 665 of 1052 triangles, 4623, 355 of 1092
    60914 triangles, 4639, 2983, 81 of 384 triangles, 4671, 565 of 616 triangles, 4599,
    60915 210 of 452 triangles, 4390, 3224, 258 of 260 triangles, 3120, 4411, 4589, 152
    60916 of 208 triangles, 3165, 3180, 3005, 2976 
    60917 
    60918 > select subtract #2.2
    60919 
    60920 44 models selected 
    60921 
    60922 > select subtract #2.14
    60923 
    60924 43 models selected 
    60925 Drag select of 4604, 286 of 94960 triangles, 4597, 38 of 71560 triangles,
    60926 4714, 88 of 884 triangles, 4743, 132 of 792 triangles, 4624, 259 of 1132
    60927 triangles, 4603, 104 of 1260 triangles, 4647, 380 of 892 triangles, 4631, 590
    60928 of 980 triangles, 4655, 226 of 692 triangles, 4715, 397 of 728 triangles,
    60929 3987, 315 of 368 triangles, 2939, 4648, 172 of 500 triangles, 4359, 227 of 340
    60930 triangles, 2941, 4735, 248 of 356 triangles, 4608, 148 of 460 triangles, 2943,
    60931 2940, 4620, 4622, 2956, 3185, 3246, 4 of 120 triangles, 3142, 2903, 3080, 3171 
    60932 
    60933 > select subtract #2.1
    60934 
    60935 70 models selected 
    60936 
    60937 > select add #2.2
    60938 
    60939 71 models selected 
    60940 
    60941 > select subtract #2.2
    60942 
    60943 70 models selected 
    60944 
    60945 > select subtract #2.14
    60946 
    60947 69 models selected 
    60948 Drag select of 4598, 68 of 94920 triangles, 4607, 211 of 1492 triangles, 4615,
    60949 947 of 1276 triangles, 4420, 4746, 13 of 528 triangles, 4614, 4617, 4636,
    60950 4642, 180 of 340 triangles, 3085, 71 of 196 triangles, 3235, 3076, 99 of 156
    60951 triangles, 3140, 3182, 2999, 38 of 56 triangles 
    60952 
    60953 > select subtract #2.2
    60954 
    60955 83 models selected 
    60956 Drag select of 4597, 215 of 71560 triangles, 4646, 3249, 114 of 476 triangles,
    60957 4381, 193 of 736 triangles, 4605, 4335, 155 of 328 triangles, 4338, 3083,
    60958 4742, 80 of 128 triangles, 2971, 41 of 80 triangles, 2957, 73 of 80 triangles,
    60959 4644, 28 of 84 triangles 
    60960 
    60961 > select subtract #2.14
    60962 
    60963 94 models selected 
    60964 Drag select of 4596, 189 of 220 triangles, 4740, 48 of 248 triangles, 2977 
    60965 Grouped 97 regions 
    60966 Opened
    60967 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    60968 as #23, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    60969 Segmenting
    60970 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    60971 density threshold 0.010668 
    60972 Showing 223 region surfaces 
    60973 3017 watershed regions, grouped to 223 regions 
    60974 Showing
    60975 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    60976 - 223 regions, 223 surfaces 
    60977 
    60978 > select #2.68
    60979 
    60980 1 model selected 
    60981 
    60982 > select add #2.66
    60983 
    60984 2 models selected 
    60985 
    60986 > select add #2.69
    60987 
    60988 3 models selected 
    60989 
    60990 > select add #2.67
    60991 
    60992 4 models selected 
    60993 
    60994 > select add #2.54
    60995 
    60996 5 models selected 
    60997 
    60998 > select add #2.59
    60999 
    61000 6 models selected 
    61001 
    61002 > select add #2.53
    61003 
    61004 7 models selected 
    61005 
    61006 > select add #2.65
    61007 
    61008 8 models selected 
    61009 
    61010 > select add #2.64
    61011 
    61012 9 models selected 
    61013 
    61014 > select add #2.61
    61015 
    61016 10 models selected 
    61017 
    61018 > select add #2.62
    61019 
    61020 11 models selected 
    61021 
    61022 > select add #2.63
    61023 
    61024 12 models selected 
    61025 
    61026 > select add #2.58
    61027 
    61028 13 models selected 
    61029 
    61030 > select add #2.56
    61031 
    61032 14 models selected 
    61033 
    61034 > select add #2.60
    61035 
    61036 15 models selected 
    61037 
    61038 > select add #2.57
    61039 
    61040 16 models selected 
    61041 
    61042 > select add #2.55
    61043 
    61044 17 models selected 
    61045 Ungrouped to 47 regions 
    61046 Ungrouped to 70 regions 
    61047 Ungrouped to 64 regions 
    61048 Ungrouped to 17 regions 
    61049 Ungrouped to 0 regions 
    61050 
    61051 > select #2.86
    61052 
    61053 1 model selected 
    61054 
    61055 > select add #2.83
    61056 
    61057 2 models selected 
    61058 
    61059 > select #2.301
    61060 
    61061 1 model selected 
    61062 
    61063 > select add #2.300
    61064 
    61065 2 models selected 
    61066 
    61067 > select add #2.299
    61068 
    61069 3 models selected 
    61070 
    61071 > hide #!23 models
    61072 
    61073 Grouped 3 regions 
    61074 Ungrouped to 3 regions 
    61075 Ungrouped to 0 regions 
    61076 
    61077 > select #2.240
    61078 
    61079 1 model selected 
    61080 
    61081 > select #2.247
    61082 
    61083 1 model selected 
    61084 
    61085 > select add #2.240
    61086 
    61087 2 models selected 
    61088 
    61089 > select add #2.236
    61090 
    61091 3 models selected 
    61092 
    61093 > select add #2.83
    61094 
    61095 4 models selected 
    61096 
    61097 > select #2.83
    61098 
    61099 1 model selected 
    61100 Ungrouped to 3 regions 
    61101 
    61102 > select #2.84
    61103 
    61104 1 model selected 
    61105 
    61106 > select add #2.78
    61107 
    61108 2 models selected 
    61109 
    61110 > select add #2.74
    61111 
    61112 3 models selected 
    61113 Ungrouped to 11 regions 
    61114 Ungrouped to 4 regions 
    61115 Ungrouped to 0 regions 
    61116 
    61117 > select #2.79
    61118 
    61119 1 model selected 
    61120 
    61121 > select add #2.76
    61122 
    61123 2 models selected 
    61124 
    61125 > select add #2.77
    61126 
    61127 3 models selected 
    61128 
    61129 > select add #2.85
    61130 
    61131 4 models selected 
    61132 
    61133 > select add #2.80
    61134 
    61135 5 models selected 
    61136 
    61137 > select add #2.81
    61138 
    61139 6 models selected 
    61140 
    61141 > select add #2.87
    61142 
    61143 7 models selected 
    61144 
    61145 > select add #2.82
    61146 
    61147 8 models selected 
    61148 
    61149 > select add #2.71
    61150 
    61151 9 models selected 
    61152 
    61153 > select add #2.75
    61154 
    61155 10 models selected 
    61156 
    61157 > select add #2.70
    61158 
    61159 11 models selected 
    61160 
    61161 > select add #2.73
    61162 
    61163 12 models selected 
    61164 
    61165 > select add #2.86
    61166 
    61167 13 models selected 
    61168 
    61169 > select add #2.265
    61170 
    61171 14 models selected 
    61172 
    61173 > select subtract #2.265
    61174 
    61175 13 models selected 
    61176 Ungrouped to 43 regions 
    61177 Ungrouped to 13 regions 
    61178 Ungrouped to 0 regions 
    61179 
    61180 > select #2.374
    61181 
    61182 1 model selected 
    61183 
    61184 > select add #2.238
    61185 
    61186 2 models selected 
    61187 
    61188 > select add #2.288
    61189 
    61190 3 models selected 
    61191 
    61192 > select add #2.292
    61193 
    61194 4 models selected 
    61195 
    61196 > select add #2.306
    61197 
    61198 5 models selected 
    61199 Grouped 5 regions 
    61200 
    61201 > select #2.371
    61202 
    61203 1 model selected 
    61204 
    61205 > select add #2.370
    61206 
    61207 2 models selected 
    61208 
    61209 > select add #2.346
    61210 
    61211 3 models selected 
    61212 
    61213 > select add #2.347
    61214 
    61215 4 models selected 
    61216 
    61217 > select add #2.315
    61218 
    61219 5 models selected 
    61220 Grouped 5 regions 
    61221 
    61222 > select #2.379
    61223 
    61224 1 model selected 
    61225 
    61226 > select add #2.376
    61227 
    61228 2 models selected 
    61229 
    61230 > select add #2.356
    61231 
    61232 3 models selected 
    61233 
    61234 > select add #2.283
    61235 
    61236 4 models selected 
    61237 
    61238 > select add #2.389
    61239 
    61240 5 models selected 
    61241 
    61242 > select add #2.266
    61243 
    61244 6 models selected 
    61245 
    61246 > select add #2.269
    61247 
    61248 7 models selected 
    61249 
    61250 > select add #2.312
    61251 
    61252 8 models selected 
    61253 Grouped 8 regions 
    61254 
    61255 > select add #2.288
    61256 
    61257 2 models selected 
    61258 Grouped 2 regions 
    61259 
    61260 > select #2.77
    61261 
    61262 1 model selected 
    61263 
    61264 > select add #2.79
    61265 
    61266 2 models selected 
    61267 
    61268 > select add #2.75
    61269 
    61270 3 models selected 
    61271 
    61272 > select add #2.339
    61273 
    61274 4 models selected 
    61275 
    61276 > select add #2.277
    61277 
    61278 5 models selected 
    61279 
    61280 > select add #2.80
    61281 
    61282 6 models selected 
    61283 
    61284 > select add #2.81
    61285 
    61286 7 models selected 
    61287 
    61288 > select add #2.333
    61289 
    61290 8 models selected 
    61291 
    61292 > select add #2.272
    61293 
    61294 9 models selected 
    61295 
    61296 > select add #2.273
    61297 
    61298 10 models selected 
    61299 
    61300 > select add #2.318
    61301 
    61302 11 models selected 
    61303 
    61304 > select add #2.301
    61305 
    61306 12 models selected 
    61307 
    61308 > select add #2.341
    61309 
    61310 13 models selected 
    61311 
    61312 > select add #2.278
    61313 
    61314 14 models selected 
    61315 
    61316 > select add #2.275
    61317 
    61318 15 models selected 
    61319 
    61320 > select add #2.287
    61321 
    61322 16 models selected 
    61323 
    61324 > select add #2.335
    61325 
    61326 17 models selected 
    61327 
    61328 > select add #2.231
    61329 
    61330 18 models selected 
    61331 
    61332 > select add #2.230
    61333 
    61334 19 models selected 
    61335 
    61336 > select add #2.59
    61337 
    61338 20 models selected 
    61339 
    61340 > select add #2.70
    61341 
    61342 21 models selected 
    61343 
    61344 > select add #2.71
    61345 
    61346 22 models selected 
    61347 
    61348 > select add #2.349
    61349 
    61350 23 models selected 
    61351 
    61352 > select add #2.351
    61353 
    61354 24 models selected 
    61355 
    61356 > select add #2.348
    61357 
    61358 25 models selected 
    61359 
    61360 > select add #2.293
    61361 
    61362 26 models selected 
    61363 
    61364 > select add #2.82
    61365 
    61366 27 models selected 
    61367 
    61368 > select subtract #2.82
    61369 
    61370 26 models selected 
    61371 
    61372 > select add #2.82
    61373 
    61374 27 models selected 
    61375 
    61376 > select add #2.85
    61377 
    61378 28 models selected 
    61379 
    61380 > select add #2.337
    61381 
    61382 29 models selected 
    61383 
    61384 > select add #2.338
    61385 
    61386 30 models selected 
    61387 
    61388 > select add #2.68
    61389 
    61390 31 models selected 
    61391 
    61392 > select add #2.368
    61393 
    61394 32 models selected 
    61395 
    61396 > select add #2.366
    61397 
    61398 33 models selected 
    61399 
    61400 > select add #2.282
    61401 
    61402 34 models selected 
    61403 
    61404 > select add #2.281
    61405 
    61406 35 models selected 
    61407 
    61408 > select add #2.279
    61409 
    61410 36 models selected 
    61411 
    61412 > select add #2.363
    61413 
    61414 37 models selected 
    61415 
    61416 > select add #2.362
    61417 
    61418 38 models selected 
    61419 
    61420 > select add #2.261
    61421 
    61422 39 models selected 
    61423 
    61424 > select add #2.263
    61425 
    61426 40 models selected 
    61427 
    61428 > select add #2.271
    61429 
    61430 41 models selected 
    61431 Drag select of 4256, 16 of 42652 triangles, 4243, 16 of 19312 triangles, 4269,
    61432 27 of 19980 triangles, 4072, 12 of 7776 triangles, 1667, 17 of 4228 triangles 
    61433 
    61434 > select add #2.86
    61435 
    61436 47 models selected 
    61437 
    61438 > select add #2.286
    61439 
    61440 48 models selected 
    61441 
    61442 > select subtract #2.101
    61443 
    61444 47 models selected 
    61445 
    61446 > select subtract #2.49
    61447 
    61448 46 models selected 
    61449 
    61450 > select add #2.284
    61451 
    61452 47 models selected 
    61453 
    61454 > select add #2.290
    61455 
    61456 48 models selected 
    61457 
    61458 > select add #2.316
    61459 
    61460 49 models selected 
    61461 Drag select of 4256, 12 of 42652 triangles, 4233, 34 of 20120 triangles, 3442,
    61462 4 of 5396 triangles, 1578, 18 of 4388 triangles, 1747, 22 of 2792 triangles,
    61463 1815, 7 of 4608 triangles, 1992, 7 of 2268 triangles, 1602, 16 of 4224
    61464 triangles 
    61465 
    61466 > select add #2.326
    61467 
    61468 54 models selected 
    61469 
    61470 > select subtract #2.46
    61471 
    61472 53 models selected 
    61473 
    61474 > select subtract #2.36
    61475 
    61476 52 models selected 
    61477 
    61478 > select subtract #2.61
    61479 
    61480 51 models selected 
    61481 
    61482 > select subtract #2.344
    61483 
    61484 50 models selected 
    61485 
    61486 > select subtract #2.303
    61487 
    61488 49 models selected 
    61489 
    61490 > select add #2.316
    61491 
    61492 50 models selected 
    61493 
    61494 > select add #2.327
    61495 
    61496 51 models selected 
    61497 
    61498 > select add #2.62
    61499 
    61500 52 models selected 
    61501 
    61502 > select add #2.78
    61503 
    61504 53 models selected 
    61505 
    61506 > select add #2.74
    61507 
    61508 54 models selected 
    61509 
    61510 > select add #2.83
    61511 
    61512 55 models selected 
    61513 
    61514 > select add #2.328
    61515 
    61516 56 models selected 
    61517 
    61518 > select add #2.330
    61519 
    61520 57 models selected 
    61521 
    61522 > select add #2.54
    61523 
    61524 58 models selected 
    61525 
    61526 > select add #2.317
    61527 
    61528 59 models selected 
    61529 
    61530 > select add #2.84
    61531 
    61532 60 models selected 
    61533 
    61534 > select add #2.245
    61535 
    61536 61 models selected 
    61537 
    61538 > select add #2.67
    61539 
    61540 62 models selected 
    61541 
    61542 > select add #2.63
    61543 
    61544 63 models selected 
    61545 
    61546 > select add #2.320
    61547 
    61548 64 models selected 
    61549 
    61550 > select add #2.265
    61551 
    61552 65 models selected 
    61553 
    61554 > select add #2.236
    61555 
    61556 66 models selected 
    61557 
    61558 > select add #2.240
    61559 
    61560 67 models selected 
    61561 
    61562 > select add #2.247
    61563 
    61564 68 models selected 
    61565 Grouped 68 regions 
    61566 
    61567 > select #2.238
    61568 
    61569 1 model selected 
    61570 
    61571 > select add #2.266
    61572 
    61573 2 models selected 
    61574 
    61575 > select add #2.54
    61576 
    61577 3 models selected 
    61578 
    61579 > select #2.54
    61580 
    61581 1 model selected 
    61582 Ungrouped to 68 regions 
    61583 
    61584 > select subtract #2.71
    61585 
    61586 67 models selected 
    61587 Grouped 67 regions 
    61588 
    61589 > select add #2.238
    61590 
    61591 2 models selected 
    61592 
    61593 > select add #2.266
    61594 
    61595 3 models selected 
    61596 
    61597 > select subtract #2.238
    61598 
    61599 2 models selected 
    61600 Grouped 2 regions 
    61601 
    61602 > select clear
    61603 
    61604 Showing 306 region surfaces 
    61605 
    61606 > select #2.238
    61607 
    61608 1 model selected 
    61609 
    61610 > select #2.58
    61611 
    61612 1 model selected 
    61613 Ungrouped to 0 regions 
    61614 
    61615 > select #2.20
    61616 
    61617 1 model selected 
    61618 Ungrouped to 5 regions 
    61619 Ungrouped to 22 regions 
    61620 Ungrouped to 20 regions 
    61621 Ungrouped to 0 regions 
    61622 
    61623 > select #2.13
    61624 
    61625 1 model selected 
    61626 
    61627 > select #2.275
    61628 
    61629 1 model selected 
    61630 
    61631 > select add #2.238
    61632 
    61633 2 models selected 
    61634 Grouped 2 regions 
    61635 
    61636 > select clear
    61637 
    61638 > select #2.20
    61639 
    61640 1 model selected 
    61641 
    61642 > select add #2.54
    61643 
    61644 2 models selected 
    61645 Opened
    61646 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    61647 as #24, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    61648 
    61649 The cached device pixel ratio value was stale on window expose. Please file a
    61650 QTBUG which explains how to reproduce. 
    61651 
    61652 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Cage-C17.mrc models #24
    61653 
    61654 > select clear
    61655 
    61656 > select #2.20
    61657 
    61658 1 model selected 
    61659 Opened
    61660 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    61661 as #25, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    61662 
    61663 The cached device pixel ratio value was stale on window expose. Please file a
    61664 QTBUG which explains how to reproduce. 
    61665 
    61666 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Cage-Mono-Good.mrc
    61667 > models #25
    61668 
    61669 > select clear
    61670 
    61671 > select #2.54
    61672 
    61673 1 model selected 
    61674 
    61675 > select add #2.20
    61676 
    61677 2 models selected 
    61678 
    61679 > hide #!2 models
    61680 
    61681 > hide #!24 models
    61682 
    61683 > show #!24 models
    61684 
    61685 > hide #!24 models
    61686 
    61687 > hide #!25 models
    61688 
    61689 > show #!2 models
    61690 
    61691 > select clear
    61692 
    61693 > select #2.54
    61694 
    61695 1 model selected 
    61696 
    61697 > select add #2.20
    61698 
    61699 2 models selected 
    61700 Opened
    61701 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    61702 as #26, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    61703 Segmenting
    61704 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    61705 density threshold 0.010668 
    61706 Showing 240 region surfaces 
    61707 2931 watershed regions, grouped to 240 regions 
    61708 Showing
    61709 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    61710 - 240 regions, 240 surfaces 
    61711 
    61712 > select #2.155
    61713 
    61714 1 model selected 
    61715 
    61716 > select add #2.165
    61717 
    61718 2 models selected 
    61719 
    61720 > select add #2.154
    61721 
    61722 3 models selected 
    61723 
    61724 > select add #2.150
    61725 
    61726 4 models selected 
    61727 
    61728 > show #!25 models
    61729 
    61730 > select add #2.157
    61731 
    61732 5 models selected 
    61733 
    61734 > select add #2.162
    61735 
    61736 6 models selected 
    61737 
    61738 > select add #2.153
    61739 
    61740 7 models selected 
    61741 
    61742 > select add #2.149
    61743 
    61744 8 models selected 
    61745 
    61746 > select add #2.158
    61747 
    61748 9 models selected 
    61749 
    61750 > select add #2.164
    61751 
    61752 10 models selected 
    61753 
    61754 > select add #2.161
    61755 
    61756 11 models selected 
    61757 
    61758 > select add #2.152
    61759 
    61760 12 models selected 
    61761 
    61762 > select add #2.160
    61763 
    61764 13 models selected 
    61765 
    61766 > select add #2.159
    61767 
    61768 14 models selected 
    61769 
    61770 > select add #2.166
    61771 
    61772 15 models selected 
    61773 
    61774 > select add #2.163
    61775 
    61776 16 models selected 
    61777 
    61778 > select add #2.156
    61779 
    61780 17 models selected 
    61781 Ungrouped to 0 regions 
    61782 
    61783 > select #2.155
    61784 
    61785 1 model selected 
    61786 
    61787 > select add #2.150
    61788 
    61789 2 models selected 
    61790 
    61791 > select add #2.157
    61792 
    61793 3 models selected 
    61794 
    61795 > select add #2.162
    61796 
    61797 4 models selected 
    61798 
    61799 > select add #2.165
    61800 
    61801 5 models selected 
    61802 
    61803 > select add #2.154
    61804 
    61805 6 models selected 
    61806 
    61807 > select add #2.156
    61808 
    61809 7 models selected 
    61810 
    61811 > select add #2.163
    61812 
    61813 8 models selected 
    61814 
    61815 > select add #2.153
    61816 
    61817 9 models selected 
    61818 
    61819 > select add #2.149
    61820 
    61821 10 models selected 
    61822 
    61823 > select add #2.158
    61824 
    61825 11 models selected 
    61826 
    61827 > select add #2.164
    61828 
    61829 12 models selected 
    61830 
    61831 > select add #2.161
    61832 
    61833 13 models selected 
    61834 
    61835 > select add #2.152
    61836 
    61837 14 models selected 
    61838 
    61839 > select add #2.160
    61840 
    61841 15 models selected 
    61842 
    61843 > select add #2.159
    61844 
    61845 16 models selected 
    61846 
    61847 > select add #2.166
    61848 
    61849 17 models selected 
    61850 
    61851 > hide #!26 models
    61852 
    61853 Grouped 17 regions 
    61854 Opened
    61855 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    61856 as #27, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    61857 
    61858 The cached device pixel ratio value was stale on window expose. Please file a
    61859 QTBUG which explains how to reproduce. 
    61860 
    61861 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/MotB.mrc models #27
    61862 
    61863 Opened
    61864 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    61865 as #28, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    61866 Segmenting
    61867 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    61868 density threshold 0.010668 
    61869 Showing 220 region surfaces 
    61870 2914 watershed regions, grouped to 220 regions 
    61871 Showing
    61872 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    61873 - 220 regions, 220 surfaces 
    61874 
    61875 > hide #!27 models
    61876 
    61877 > hide #!28 models
    61878 
    61879 > select #2.83
    61880 
    61881 1 model selected 
    61882 Ungrouped to 2 regions 
    61883 [Repeated 2 time(s)]Ungrouped to 0 regions 
    61884 
    61885 > select #2.222
    61886 
    61887 1 model selected 
    61888 
    61889 > select add #2.224
    61890 
    61891 2 models selected 
    61892 
    61893 > select add #2.221
    61894 
    61895 3 models selected 
    61896 
    61897 > select #2.53
    61898 
    61899 1 model selected 
    61900 Ungrouped to 2 regions 
    61901 Ungrouped to 5 regions 
    61902 Ungrouped to 4 regions 
    61903 Ungrouped to 0 regions 
    61904 
    61905 > select #2.230
    61906 
    61907 1 model selected 
    61908 
    61909 > select add #2.227
    61910 
    61911 2 models selected 
    61912 
    61913 > select add #2.221
    61914 
    61915 3 models selected 
    61916 
    61917 > select add #2.224
    61918 
    61919 4 models selected 
    61920 
    61921 > select add #2.222
    61922 
    61923 5 models selected 
    61924 Grouped 5 regions 
    61925 
    61926 > select #2.223
    61927 
    61928 1 model selected 
    61929 Ungrouped to 0 regions 
    61930 
    61931 > select #2.53
    61932 
    61933 1 model selected 
    61934 
    61935 > hide #!25 models
    61936 
    61937 > select #2.229
    61938 
    61939 1 model selected 
    61940 
    61941 > select add #2.83
    61942 
    61943 2 models selected 
    61944 
    61945 > select add #2.78
    61946 
    61947 3 models selected 
    61948 
    61949 > select subtract #2.78
    61950 
    61951 2 models selected 
    61952 
    61953 > select #2.231
    61954 
    61955 1 model selected 
    61956 
    61957 > select add #2.53
    61958 
    61959 2 models selected 
    61960 Grouped 2 regions 
    61961 Ungrouped to 2 regions 
    61962 
    61963 > select #2.221
    61964 
    61965 1 model selected 
    61966 Ungrouped to 0 regions 
    61967 
    61968 > select #2.222
    61969 
    61970 1 model selected 
    61971 
    61972 > select add #2.221
    61973 
    61974 2 models selected 
    61975 Showing 225 region surfaces 
    61976 
    61977 > select #2.222
    61978 
    61979 1 model selected 
    61980 Ungrouped to 5 regions 
    61981 
    61982 > select #2.227
    61983 
    61984 1 model selected 
    61985 Ungrouped to 0 regions 
    61986 
    61987 > show #!24 models
    61988 
    61989 > show #!27 models
    61990 
    61991 > hide #!27 models
    61992 
    61993 > hide #!24 models
    61994 
    61995 Showing 229 region surfaces 
    61996 
    61997 > select #2.224
    61998 
    61999 1 model selected 
    62000 
    62001 > select add #2.226
    62002 
    62003 2 models selected 
    62004 
    62005 > select add #2.230
    62006 
    62007 3 models selected 
    62008 
    62009 > select add #2.53
    62010 
    62011 4 models selected 
    62012 
    62013 > select add #2.227
    62014 
    62015 5 models selected 
    62016 
    62017 > select subtract #2.226
    62018 
    62019 4 models selected 
    62020 Grouped 4 regions 
    62021 
    62022 > select add #2.226
    62023 
    62024 2 models selected 
    62025 
    62026 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Segmentation.cxs
    62027 > includeMaps true
    62028 
    62029 > select #2.78
    62030 
    62031 1 model selected 
    62032 
    62033 > select add #2.229
    62034 
    62035 2 models selected 
    62036 
    62037 > select add #2.83
    62038 
    62039 3 models selected 
    62040 
    62041 > select add #2.225
    62042 
    62043 4 models selected 
    62044 
    62045 > select #2.78
    62046 
    62047 1 model selected 
    62048 Ungrouped to 2 regions 
    62049 
    62050 > select #2.224
    62051 
    62052 1 model selected 
    62053 
    62054 > select add #2.221
    62055 
    62056 2 models selected 
    62057 
    62058 > select add #2.229
    62059 
    62060 3 models selected 
    62061 
    62062 > select add #2.83
    62063 
    62064 4 models selected 
    62065 
    62066 > select #2.89
    62067 
    62068 1 model selected 
    62069 
    62070 > select #2.228
    62071 
    62072 1 model selected 
    62073 
    62074 > save /Users/shoichi/Desktop/Original-map-deposit/Seg/Segmentation.cxs
    62075 > includeMaps true
    62076 
    62077 ——— End of log from Fri Jul 25 14:31:14 2025 ———
    62078 
    62079 opened ChimeraX session 
    62080 Showing
    62081 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    62082 - 227 regions, 227 surfaces 
    62083 
    62084 > select #2.206
    62085 
    62086 1 model selected 
    62087 
    62088 > select subtract #2.206
    62089 
    62090 Nothing selected 
    62091 
    62092 > select add #2.166
    62093 
    62094 1 model selected 
    62095 
    62096 > select add #2.206
    62097 
    62098 2 models selected 
    62099 
    62100 > select add #2.115
    62101 
    62102 3 models selected 
    62103 
    62104 > select add #2.203
    62105 
    62106 4 models selected 
    62107 
    62108 > select add #2.122
    62109 
    62110 5 models selected 
    62111 
    62112 > select add #2.100
    62113 
    62114 6 models selected 
    62115 
    62116 > select add #2.170
    62117 
    62118 7 models selected 
    62119 
    62120 > select add #2.200
    62121 
    62122 8 models selected 
    62123 
    62124 > select add #2.14
    62125 
    62126 9 models selected 
    62127 
    62128 > select add #2.60
    62129 
    62130 10 models selected 
    62131 
    62132 > select add #2.205
    62133 
    62134 11 models selected 
    62135 Grouped 11 regions 
    62136 
    62137 > select add #2.32
    62138 
    62139 2 models selected 
    62140 
    62141 > select add #2.64
    62142 
    62143 3 models selected 
    62144 
    62145 > select add #2.66
    62146 
    62147 4 models selected 
    62148 Grouped 4 regions 
    62149 
    62150 > select add #2.173
    62151 
    62152 2 models selected 
    62153 
    62154 > select clear
    62155 
    62156 > select #2.173
    62157 
    62158 1 model selected 
    62159 Ungrouped to 14 regions 
    62160 
    62161 > select #2.166
    62162 
    62163 1 model selected 
    62164 
    62165 > select add #2.191
    62166 
    62167 2 models selected 
    62168 Grouped 2 regions 
    62169 
    62170 > select add #2.170
    62171 
    62172 2 models selected 
    62173 
    62174 > select add #2.122
    62175 
    62176 3 models selected 
    62177 
    62178 > select add #2.153
    62179 
    62180 4 models selected 
    62181 
    62182 > select clear
    62183 
    62184 > select #2.153
    62185 
    62186 1 model selected 
    62187 Ungrouped to 18 regions 
    62188 
    62189 > select #2.143
    62190 
    62191 1 model selected 
    62192 
    62193 > select add #2.86
    62194 
    62195 2 models selected 
    62196 
    62197 > select add #2.16
    62198 
    62199 3 models selected 
    62200 
    62201 > select add #2.124
    62202 
    62203 4 models selected 
    62204 
    62205 > select #2.238
    62206 
    62207 1 model selected 
    62208 
    62209 > select add #2.194
    62210 
    62211 2 models selected 
    62212 Ungrouped to 13 regions 
    62213 Ungrouped to 37 regions 
    62214 
    62215 > select #2.278
    62216 
    62217 1 model selected 
    62218 
    62219 > select add #2.260
    62220 
    62221 2 models selected 
    62222 
    62223 > select add #2.290
    62224 
    62225 3 models selected 
    62226 
    62227 > select add #2.258
    62228 
    62229 4 models selected 
    62230 
    62231 > select add #2.272
    62232 
    62233 5 models selected 
    62234 
    62235 > select add #2.237
    62236 
    62237 6 models selected 
    62238 
    62239 > select add #2.274
    62240 
    62241 7 models selected 
    62242 
    62243 > select add #2.273
    62244 
    62245 8 models selected 
    62246 
    62247 > select add #2.267
    62248 
    62249 9 models selected 
    62250 Grouped 9 regions 
    62251 
    62252 > select #2.235
    62253 
    62254 1 model selected 
    62255 Ungrouped to 5 regions 
    62256 
    62257 > select #2.248
    62258 
    62259 1 model selected 
    62260 
    62261 > select add #2.291
    62262 
    62263 2 models selected 
    62264 
    62265 > select add #2.194
    62266 
    62267 3 models selected 
    62268 
    62269 > select add #2.173
    62270 
    62271 4 models selected 
    62272 
    62273 > select add #2.236
    62274 
    62275 5 models selected 
    62276 
    62277 > select subtract #2.173
    62278 
    62279 4 models selected 
    62280 Grouped 4 regions 
    62281 
    62282 > select add #2.14
    62283 
    62284 2 models selected 
    62285 Grouped 2 regions 
    62286 
    62287 > select clear
    62288 
    62289 > select #2.173
    62290 
    62291 1 model selected 
    62292 Ungrouped to 7 regions 
    62293 Ungrouped to 13 regions 
    62294 
    62295 > select #2.267
    62296 
    62297 1 model selected 
    62298 
    62299 > select add #2.256
    62300 
    62301 2 models selected 
    62302 
    62303 > select add #2.255
    62304 
    62305 3 models selected 
    62306 
    62307 > select add #2.173
    62308 
    62309 4 models selected 
    62310 
    62311 > select add #2.278
    62312 
    62313 5 models selected 
    62314 
    62315 > select add #2.260
    62316 
    62317 6 models selected 
    62318 
    62319 > select add #2.14
    62320 
    62321 7 models selected 
    62322 
    62323 > select add #2.274
    62324 
    62325 8 models selected 
    62326 
    62327 > select add #2.238
    62328 
    62329 9 models selected 
    62330 
    62331 > select add #2.239
    62332 
    62333 10 models selected 
    62334 Grouped 10 regions 
    62335 
    62336 > select add #2.153
    62337 
    62338 2 models selected 
    62339 Grouped 2 regions 
    62340 
    62341 > select add #2.257
    62342 
    62343 2 models selected 
    62344 Grouped 2 regions 
    62345 
    62346 > select #2.205
    62347 
    62348 1 model selected 
    62349 
    62350 > select add #2.166
    62351 
    62352 2 models selected 
    62353 
    62354 > select #2.166
    62355 
    62356 1 model selected 
    62357 Ungrouped to 2 regions 
    62358 Ungrouped to 22 regions 
    62359 Ungrouped to 47 regions 
    62360 
    62361 > select #2.300
    62362 
    62363 1 model selected 
    62364 
    62365 > select add #2.313
    62366 
    62367 2 models selected 
    62368 
    62369 > select add #2.331
    62370 
    62371 3 models selected 
    62372 
    62373 > select add #2.173
    62374 
    62375 4 models selected 
    62376 
    62377 > select add #2.153
    62378 
    62379 5 models selected 
    62380 
    62381 > select add #2.310
    62382 
    62383 6 models selected 
    62384 
    62385 > select subtract #2.310
    62386 
    62387 5 models selected 
    62388 
    62389 > select add #2.200
    62390 
    62391 6 models selected 
    62392 
    62393 > select add #2.310
    62394 
    62395 7 models selected 
    62396 
    62397 > select add #2.311
    62398 
    62399 8 models selected 
    62400 
    62401 > select add #2.337
    62402 
    62403 9 models selected 
    62404 
    62405 > select add #2.335
    62406 
    62407 10 models selected 
    62408 
    62409 > select add #2.334
    62410 
    62411 11 models selected 
    62412 
    62413 > select add #2.330
    62414 
    62415 12 models selected 
    62416 
    62417 > select add #2.332
    62418 
    62419 13 models selected 
    62420 
    62421 > select add #2.321
    62422 
    62423 14 models selected 
    62424 
    62425 > select add #2.115
    62426 
    62427 15 models selected 
    62428 
    62429 > select add #2.315
    62430 
    62431 16 models selected 
    62432 Grouped 16 regions 
    62433 
    62434 > select add #2.336
    62435 
    62436 2 models selected 
    62437 
    62438 > select add #2.338
    62439 
    62440 3 models selected 
    62441 
    62442 > select add #2.14
    62443 
    62444 4 models selected 
    62445 Grouped 4 regions 
    62446 
    62447 > select #2.170
    62448 
    62449 1 model selected 
    62450 
    62451 > select add #2.307
    62452 
    62453 2 models selected 
    62454 
    62455 > select add #2.268
    62456 
    62457 3 models selected 
    62458 Grouped 3 regions 
    62459 
    62460 > select add #2.14
    62461 
    62462 2 models selected 
    62463 Grouped 2 regions 
    62464 
    62465 > select add #2.122
    62466 
    62467 2 models selected 
    62468 
    62469 > select add #2.151
    62470 
    62471 3 models selected 
    62472 
    62473 > select add #2.314
    62474 
    62475 4 models selected 
    62476 
    62477 > select add #2.205
    62478 
    62479 5 models selected 
    62480 
    62481 > select add #2.312
    62482 
    62483 6 models selected 
    62484 
    62485 > select add #2.301
    62486 
    62487 7 models selected 
    62488 
    62489 > select add #2.303
    62490 
    62491 8 models selected 
    62492 
    62493 > select add #2.302
    62494 
    62495 9 models selected 
    62496 
    62497 > select add #2.333
    62498 
    62499 10 models selected 
    62500 
    62501 > select add #2.304
    62502 
    62503 11 models selected 
    62504 
    62505 > select add #2.270
    62506 
    62507 12 models selected 
    62508 
    62509 > select add #2.277
    62510 
    62511 13 models selected 
    62512 
    62513 > select add #2.259
    62514 
    62515 14 models selected 
    62516 
    62517 > select add #2.258
    62518 
    62519 15 models selected 
    62520 
    62521 > select add #2.276
    62522 
    62523 16 models selected 
    62524 Grouped 16 regions 
    62525 
    62526 > select clear
    62527 
    62528 > select #2.14
    62529 
    62530 1 model selected 
    62531 
    62532 The cached device pixel ratio value was stale on window expose. Please file a
    62533 QTBUG which explains how to reproduce. 
    62534 
    62535 > select clear
    62536 
    62537 > select #2.14
    62538 
    62539 1 model selected 
    62540 Ungrouped to 16 regions 
    62541 Ungrouped to 53 regions 
    62542 Ungrouped to 122 regions 
    62543 
    62544 > select #2.363
    62545 
    62546 1 model selected 
    62547 Ungrouped to 2 regions 
    62548 [Repeated 1 time(s)]Ungrouped to 19 regions 
    62549 
    62550 > select #2.331
    62551 
    62552 1 model selected 
    62553 Ungrouped to 2 regions 
    62554 Ungrouped to 8 regions 
    62555 Ungrouped to 29 regions 
    62556 Ungrouped to 51 regions 
    62557 Ungrouped to 82 regions 
    62558 Ungrouped to 94 regions 
    62559 Ungrouped to 49 regions 
    62560 Ungrouped to 0 regions 
    62561 
    62562 > select #2.330
    62563 
    62564 1 model selected 
    62565 Ungrouped to 25 regions 
    62566 Ungrouped to 57 regions 
    62567 Ungrouped to 33 regions 
    62568 Ungrouped to 0 regions 
    62569 
    62570 > select clear
    62571 
    62572 Drag select of 2134, 646 of 1164 triangles, 2157, 184 of 480 triangles, 2136,
    62573 18 of 208 triangles, 2206, 2270, 2192, 2306, 2255, 2287, 2217, 125 of 212
    62574 triangles, 2230, 285 of 288 triangles 
    62575 Drag select of 3887, 50 of 32680 triangles, 2253, 2168, 416 of 504 triangles,
    62576 2149, 118 of 664 triangles 
    62577 
    62578 > select subtract #2.451
    62579 
    62580 14 models selected 
    62581 
    62582 > select add #2.451
    62583 
    62584 15 models selected 
    62585 
    62586 > select subtract #2.451
    62587 
    62588 14 models selected 
    62589 Drag select of 2846, 2861, 96 of 100 triangles, 2906, 2895, 2907, 66 of 80
    62590 triangles, 3769, 77 of 1564 triangles, 2866, 25 of 80 triangles 
    62591 
    62592 > select subtract #2.411
    62593 
    62594 20 models selected 
    62595 Drag select of 2903, 2902, 2844, 119 of 264 triangles, 2893, 114 of 224
    62596 triangles, 2914, 2894, 2824, 2904, 2823, 2790, 2789, 2875, 32 of 196 triangles 
    62597 Grouped 32 regions 
    62598 Drag select of 2842, 4163, 240 of 38128 triangles, 2803, 3717, 38 of 1544
    62599 triangles, 2788, 2899, 2898, 2686, 100 of 236 triangles 
    62600 
    62601 > select subtract #2.416
    62602 
    62603 8 models selected 
    62604 
    62605 > select clear
    62606 
    62607 [Repeated 1 time(s)]Drag select of 3759, 13 of 3948 triangles, 1932, 1929,
    62608 1941, 1958, 1943, 1961, 1950, 1931, 1917, 1937, 1979, 1926, 1927, 1930, 1915,
    62609 1963, 1944, 1965, 1949, 1948, 1964, 1987, 1980, 1995, 1994, 1953, 1955, 1945,
    62610 1989, 1986, 1924, 1916, 1914, 1936, 1962, 1946, 1952, 1954, 1947, 1970, 1951,
    62611 1971, 1960, 1966, 1968, 1918, 1942, 1978, 1985, 1993, 1959, 1957, 2009, 319 of
    62612 1352 triangles, 1983, 1967, 1969, 1934, 1919, 2008, 503 of 2396 triangles,
    62613 2005, 1128 of 1468 triangles, 2011, 826 of 1532 triangles, 2042, 685 of 1608
    62614 triangles, 2041, 530 of 1332 triangles, 2001, 3009 of 4812 triangles, 1999,
    62615 3884 of 5484 triangles, 2019, 15 of 1068 triangles, 1984, 1991, 1992, 2018,
    62616 376 of 1536 triangles, 2015, 629 of 2064 triangles, 2034, 546 of 1292
    62617 triangles, 2045, 87 of 1696 triangles, 2054, 359 of 2100 triangles, 1976,
    62618 1975, 2016, 323 of 2124 triangles, 1973, 1972, 1977, 1974, 1982, 1990, 1998,
    62619 5283 of 6072 triangles, 1988, 1981, 1920, 1933, 2020, 251 of 4748 triangles,
    62620 2022, 209 of 1996 triangles, 2003, 3804 of 4272 triangles, 2014, 505 of 1296
    62621 triangles, 1996, 5206 of 6132 triangles, 2044, 111 of 1444 triangles, 2004,
    62622 2260 of 3664 triangles, 2000, 4488 of 6468 triangles, 2043, 456 of 1960
    62623 triangles, 2017, 765 of 4084 triangles, 2006, 679 of 1672 triangles, 2007, 509
    62624 of 1244 triangles, 2040, 707 of 1872 triangles, 2013, 708 of 1036 triangles,
    62625 1997, 4320 of 4764 triangles, 2021, 289 of 4780 triangles, 2012, 664 of 1836
    62626 triangles, 2033, 382 of 868 triangles, 2010, 836 of 2120 triangles, 2032, 559
    62627 of 1060 triangles 
    62628 Grouped 109 regions 
    62629 
    62630 > select #2.451
    62631 
    62632 1 model selected 
    62633 Ungrouped to 20 regions 
    62634 Ungrouped to 34 regions 
    62635 
    62636 > select #2.517
    62637 
    62638 1 model selected 
    62639 
    62640 > select add #2.520
    62641 
    62642 2 models selected 
    62643 
    62644 > select add #2.482
    62645 
    62646 3 models selected 
    62647 
    62648 > select add #2.507
    62649 
    62650 4 models selected 
    62651 
    62652 > select add #2.506
    62653 
    62654 5 models selected 
    62655 
    62656 > select add #2.362
    62657 
    62658 6 models selected 
    62659 
    62660 > select subtract #2.362
    62661 
    62662 5 models selected 
    62663 
    62664 > select add #2.519
    62665 
    62666 6 models selected 
    62667 
    62668 > select add #2.598
    62669 
    62670 7 models selected 
    62671 
    62672 > select add #2.702
    62673 
    62674 8 models selected 
    62675 
    62676 > select add #2.577
    62677 
    62678 9 models selected 
    62679 
    62680 > select add #2.663
    62681 
    62682 10 models selected 
    62683 
    62684 > select add #2.362
    62685 
    62686 11 models selected 
    62687 
    62688 > select subtract #2.362
    62689 
    62690 10 models selected 
    62691 
    62692 > select clear
    62693 
    62694 > select #2.362
    62695 
    62696 1 model selected 
    62697 Ungrouped to 16 regions 
    62698 Ungrouped to 21 regions 
    62699 
    62700 > select clear
    62701 
    62702 [Repeated 1 time(s)]
    62703 
    62704 > select #2.551
    62705 
    62706 1 model selected 
    62707 
    62708 > select clear
    62709 
    62710 > select #2.338
    62711 
    62712 1 model selected 
    62713 Drag select of 2207, 915 of 2828 triangles, 2267, 82 of 2000 triangles, 2205,
    62714 637 of 1484 triangles, 2127, 1696 of 2468 triangles, 2246, 215 of 1748
    62715 triangles, 2204, 1029 of 2616 triangles, 2244, 235 of 1900 triangles, 2101,
    62716 1796 of 2524 triangles, 2111, 1626 of 2368 triangles, 2077, 2114, 1819 of 2544
    62717 triangles, 2095, 2272, 25 of 1112 triangles, 2265, 210 of 2556 triangles,
    62718 2094, 2073, 3412, 2268 of 2968 triangles, 2161, 1383 of 2096 triangles, 2103,
    62719 2098, 2268 of 3096 triangles, 2100, 3218, 159 of 3636 triangles, 3725, 904 of
    62720 4604 triangles, 2139, 2138, 2203, 764 of 1816 triangles, 2221, 288 of 924
    62721 triangles, 3877, 262 of 21936 triangles, 3495, 2947 of 3972 triangles, 3537,
    62722 1208 of 4924 triangles, 2099, 2102, 2174, 1030 of 1876 triangles, 3057, 555 of
    62723 3912 triangles, 2084, 2239, 260 of 2052 triangles, 2163, 814 of 1040
    62724 triangles, 2105, 2162, 1157 of 1916 triangles, 2082, 2504 of 3552 triangles,
    62725 2197, 742 of 1664 triangles, 2116, 1835 of 2604 triangles, 2104, 2237, 381 of
    62726 1888 triangles, 2235, 314 of 1472 triangles, 2236, 325 of 1940 triangles,
    62727 2277, 65 of 2228 triangles, 2280, 159 of 2984 triangles, 2196, 867 of 1544
    62728 triangles, 2248, 222 of 1352 triangles, 2209, 649 of 1712 triangles, 2133,
    62729 1739 of 2396 triangles, 2155, 1959 of 2504 triangles, 2152, 2120 of 2980
    62730 triangles, 2171, 628 of 1540 triangles, 2247, 297 of 2168 triangles, 2273, 53
    62731 of 1676 triangles, 2274, 169 of 1632 triangles, 2068, 2067, 2065, 2093, 2023,
    62732 2049, 2039, 2066, 2063, 2026, 2036, 2154, 838 of 1456 triangles, 2112, 1559 of
    62733 2244 triangles, 2079, 2122, 1485 of 2332 triangles, 2088, 2097, 2048, 2035,
    62734 2037, 2052, 2050, 2051, 2028, 2030, 2046, 2092, 2029, 2091, 2047, 2038, 2072,
    62735 2125, 1513 of 1760 triangles, 2024, 2172, 870 of 1232 triangles, 2194, 964 of
    62736 1384 triangles, 2064, 2061, 2153, 1934 of 2784 triangles, 2170, 661 of 916
    62737 triangles, 2059, 2074, 2053, 2083, 2055, 2076, 1835 of 2684 triangles, 2078,
    62738 2031, 2027, 2090, 2201, 451 of 616 triangles, 2108, 2022 of 2236 triangles,
    62739 2056, 2025, 2062, 2489 of 2680 triangles, 2086, 2202, 655 of 1032 triangles,
    62740 2057, 2058, 2109, 2110, 2060, 2137, 2069, 2342 of 2348 triangles, 2262, 172 of
    62741 1840 triangles, 2185, 559 of 1536 triangles, 2187, 768 of 2344 triangles,
    62742 2219, 506 of 1216 triangles, 3385, 2893 of 4476 triangles, 2087, 2233, 226 of
    62743 1332 triangles, 2222, 406 of 1868 triangles, 2148, 1229 of 2536 triangles,
    62744 2085, 2075, 1876 of 2688 triangles, 2243, 20 of 2236 triangles, 2145, 1017 of
    62745 2040 triangles, 2160, 1201 of 2248 triangles, 2158, 1220 of 2148 triangles,
    62746 2113, 2200 of 3032 triangles, 2191, 704 of 1352 triangles, 2263, 43 of 1144
    62747 triangles, 2131, 1003 of 1464 triangles, 2200, 581 of 1276 triangles, 2269,
    62748 158 of 2376 triangles, 3205, 40 of 3552 triangles, 3834, 2375 of 3076
    62749 triangles 
    62750 Grouped 146 regions 
    62751 Drag select of 2275, 2292, 2266, 2406, 677 of 704 triangles, 2418, 997 of 2592
    62752 triangles, 2445, 223 of 1580 triangles, 2392, 878 of 2072 triangles, 2394, 763
    62753 of 1852 triangles, 2991, 28 of 2332 triangles, 2260, 2382, 1216 of 1572
    62754 triangles, 3141, 16 of 2840 triangles, 2492, 275 of 2348 triangles, 2409, 792
    62755 of 900 triangles, 2408, 730 of 816 triangles, 3208, 1453 of 2324 triangles,
    62756 2295, 2380, 1069 of 1760 triangles, 2381, 738 of 872 triangles, 2407, 785 of
    62757 828 triangles, 2495, 651 of 2424 triangles, 2427, 925 of 1788 triangles, 2429,
    62758 965 of 2440 triangles, 2434, 1058 of 1880 triangles, 2498, 448 of 2132
    62759 triangles, 2405, 1143 of 1820 triangles, 2428, 851 of 1496 triangles, 2430,
    62760 1318 of 3396 triangles, 2425, 1030 of 1688 triangles, 2379, 1437 of 2060
    62761 triangles, 2493, 391 of 2872 triangles, 2404, 1118 of 1928 triangles, 2494,
    62762 542 of 3696 triangles, 2467, 464 of 812 triangles, 2426, 979 of 4276
    62763 triangles, 2484, 125 of 2144 triangles, 2261, 2486, 9 of 2760 triangles, 2369,
    62764 936 of 1940 triangles, 2396, 856 of 1952 triangles, 3140, 2122 of 3520
    62765 triangles, 2290, 2344, 634 of 1080 triangles, 3240, 1956 of 2976 triangles,
    62766 2291, 2391, 410 of 708 triangles, 3241, 1917 of 3736 triangles, 2485, 69 of
    62767 2684 triangles, 2361, 755 of 1560 triangles, 2416, 287 of 648 triangles, 2527,
    62768 579 of 2632 triangles, 2431, 629 of 724 triangles, 2420, 544 of 876 triangles,
    62769 2371, 1109 of 1396 triangles, 2293, 1765 of 1808 triangles, 2375, 1032 of 1908
    62770 triangles, 2374, 810 of 884 triangles, 3678, 3924 of 12112 triangles, 2378,
    62771 1381 of 1464 triangles, 2294 
    62772 Grouped 61 regions 
    62773 
    62774 > select add #2.537
    62775 
    62776 2 models selected 
    62777 
    62778 > select add #2.536
    62779 
    62780 3 models selected 
    62781 
    62782 > select add #2.516
    62783 
    62784 4 models selected 
    62785 
    62786 > select add #2.451
    62787 
    62788 5 models selected 
    62789 
    62790 > select add #2.390
    62791 
    62792 6 models selected 
    62793 
    62794 > select add #2.393
    62795 
    62796 7 models selected 
    62797 
    62798 > select add #2.389
    62799 
    62800 8 models selected 
    62801 
    62802 > select add #2.388
    62803 
    62804 9 models selected 
    62805 
    62806 > select add #2.380
    62807 
    62808 10 models selected 
    62809 
    62810 > select add #2.378
    62811 
    62812 11 models selected 
    62813 
    62814 > select add #2.377
    62815 
    62816 12 models selected 
    62817 
    62818 > select add #2.383
    62819 
    62820 13 models selected 
    62821 
    62822 > select add #2.384
    62823 
    62824 14 models selected 
    62825 
    62826 > select add #2.464
    62827 
    62828 15 models selected 
    62829 
    62830 > select add #2.381
    62831 
    62832 16 models selected 
    62833 
    62834 > select add #2.303
    62835 
    62836 17 models selected 
    62837 
    62838 > select add #2.382
    62839 
    62840 18 models selected 
    62841 
    62842 > select add #2.379
    62843 
    62844 19 models selected 
    62845 
    62846 > select add #2.751
    62847 
    62848 20 models selected 
    62849 
    62850 > select add #2.762
    62851 
    62852 21 models selected 
    62853 
    62854 > select add #2.563
    62855 
    62856 22 models selected 
    62857 
    62858 > select add #2.356
    62859 
    62860 23 models selected 
    62861 
    62862 > select add #2.359
    62863 
    62864 24 models selected 
    62865 
    62866 > select add #2.363
    62867 
    62868 25 models selected 
    62869 
    62870 > select add #2.613
    62871 
    62872 26 models selected 
    62873 
    62874 > select add #2.542
    62875 
    62876 27 models selected 
    62877 
    62878 > select add #2.760
    62879 
    62880 28 models selected 
    62881 Grouped 28 regions 
    62882 
    62883 > select add #2.392
    62884 
    62885 2 models selected 
    62886 
    62887 > select add #2.466
    62888 
    62889 3 models selected 
    62890 
    62891 > select add #2.422
    62892 
    62893 4 models selected 
    62894 
    62895 > select add #2.771
    62896 
    62897 5 models selected 
    62898 
    62899 > select add #2.756
    62900 
    62901 6 models selected 
    62902 
    62903 > select add #2.759
    62904 
    62905 7 models selected 
    62906 
    62907 > select add #2.439
    62908 
    62909 8 models selected 
    62910 Grouped 8 regions 
    62911 
    62912 > select add #2.763
    62913 
    62914 2 models selected 
    62915 
    62916 > select add #2.450
    62917 
    62918 3 models selected 
    62919 
    62920 > select add #2.410
    62921 
    62922 4 models selected 
    62923 
    62924 > select add #2.415
    62925 
    62926 5 models selected 
    62927 
    62928 > select add #2.769
    62929 
    62930 6 models selected 
    62931 
    62932 > select add #2.711
    62933 
    62934 7 models selected 
    62935 
    62936 > select add #2.710
    62937 
    62938 8 models selected 
    62939 
    62940 > select add #2.770
    62941 
    62942 9 models selected 
    62943 
    62944 > select add #2.740
    62945 
    62946 10 models selected 
    62947 
    62948 > select add #2.350
    62949 
    62950 11 models selected 
    62951 
    62952 > select add #2.765
    62953 
    62954 12 models selected 
    62955 
    62956 > select add #2.764
    62957 
    62958 13 models selected 
    62959 
    62960 > select add #2.731
    62961 
    62962 14 models selected 
    62963 
    62964 > select add #2.727
    62965 
    62966 15 models selected 
    62967 
    62968 > select add #2.732
    62969 
    62970 16 models selected 
    62971 
    62972 > select add #2.534
    62973 
    62974 17 models selected 
    62975 
    62976 > select add #2.568
    62977 
    62978 18 models selected 
    62979 
    62980 > select add #2.761
    62981 
    62982 19 models selected 
    62983 
    62984 > select add #2.704
    62985 
    62986 20 models selected 
    62987 
    62988 > select add #2.412
    62989 
    62990 21 models selected 
    62991 Grouped 21 regions 
    62992 
    62993 > select add #2.700
    62994 
    62995 2 models selected 
    62996 
    62997 > select add #2.707
    62998 
    62999 3 models selected 
    63000 
    63001 > select add #2.730
    63002 
    63003 4 models selected 
    63004 
    63005 > select add #2.714
    63006 
    63007 5 models selected 
    63008 
    63009 > select add #2.713
    63010 
    63011 6 models selected 
    63012 
    63013 > select add #2.778
    63014 
    63015 7 models selected 
    63016 
    63017 > select add #2.703
    63018 
    63019 8 models selected 
    63020 
    63021 > select add #2.741
    63022 
    63023 9 models selected 
    63024 
    63025 > select add #2.742
    63026 
    63027 10 models selected 
    63028 
    63029 > select add #2.775
    63030 
    63031 11 models selected 
    63032 
    63033 > select add #2.773
    63034 
    63035 12 models selected 
    63036 
    63037 > select add #2.733
    63038 
    63039 13 models selected 
    63040 
    63041 > select add #2.774
    63042 
    63043 14 models selected 
    63044 
    63045 > select add #2.425
    63046 
    63047 15 models selected 
    63048 
    63049 > select add #2.766
    63050 
    63051 16 models selected 
    63052 
    63053 > select add #2.767
    63054 
    63055 17 models selected 
    63056 
    63057 > select add #2.768
    63058 
    63059 18 models selected 
    63060 
    63061 > select add #2.715
    63062 
    63063 19 models selected 
    63064 
    63065 > select add #2.706
    63066 
    63067 20 models selected 
    63068 
    63069 > select add #2.777
    63070 
    63071 21 models selected 
    63072 
    63073 > select add #2.712
    63074 
    63075 22 models selected 
    63076 Grouped 22 regions 
    63077 
    63078 > select add #2.418
    63079 
    63080 2 models selected 
    63081 
    63082 > select add #2.442
    63083 
    63084 3 models selected 
    63085 
    63086 > select add #2.735
    63087 
    63088 4 models selected 
    63089 
    63090 > select add #2.752
    63091 
    63092 5 models selected 
    63093 
    63094 > select add #2.737
    63095 
    63096 6 models selected 
    63097 
    63098 > select add #2.734
    63099 
    63100 7 models selected 
    63101 
    63102 > select add #2.736
    63103 
    63104 8 models selected 
    63105 
    63106 > select add #2.726
    63107 
    63108 9 models selected 
    63109 
    63110 > select add #2.436
    63111 
    63112 10 models selected 
    63113 
    63114 > select add #2.717
    63115 
    63116 11 models selected 
    63117 
    63118 > select add #2.411
    63119 
    63120 12 models selected 
    63121 
    63122 > select add #2.424
    63123 
    63124 13 models selected 
    63125 
    63126 > select add #2.456
    63127 
    63128 14 models selected 
    63129 Grouped 14 regions 
    63130 
    63131 > select add #2.728
    63132 
    63133 2 models selected 
    63134 
    63135 > select add #2.330
    63136 
    63137 3 models selected 
    63138 
    63139 > select add #2.471
    63140 
    63141 4 models selected 
    63142 
    63143 > select add #2.441
    63144 
    63145 5 models selected 
    63146 
    63147 > select add #2.429
    63148 
    63149 6 models selected 
    63150 
    63151 > select add #2.423
    63152 
    63153 7 models selected 
    63154 
    63155 > select add #2.401
    63156 
    63157 8 models selected 
    63158 
    63159 > select add #2.427
    63160 
    63161 9 models selected 
    63162 
    63163 > select add #2.151
    63164 
    63165 10 models selected 
    63166 
    63167 > select add #2.421
    63168 
    63169 11 models selected 
    63170 Grouped 11 regions 
    63171 
    63172 > select add #2.470
    63173 
    63174 2 models selected 
    63175 
    63176 > select add #2.431
    63177 
    63178 3 models selected 
    63179 
    63180 > select add #2.370
    63181 
    63182 4 models selected 
    63183 
    63184 > select add #2.417
    63185 
    63186 5 models selected 
    63187 
    63188 > select add #2.433
    63189 
    63190 6 models selected 
    63191 
    63192 > select add #2.122
    63193 
    63194 7 models selected 
    63195 
    63196 > select add #2.449
    63197 
    63198 8 models selected 
    63199 
    63200 > select subtract #2.449
    63201 
    63202 7 models selected 
    63203 
    63204 > select add #2.426
    63205 
    63206 8 models selected 
    63207 
    63208 > select add #2.413
    63209 
    63210 9 models selected 
    63211 
    63212 > select add #2.420
    63213 
    63214 10 models selected 
    63215 
    63216 > select add #2.447
    63217 
    63218 11 models selected 
    63219 
    63220 > select add #2.371
    63221 
    63222 12 models selected 
    63223 
    63224 > select add #2.153
    63225 
    63226 13 models selected 
    63227 
    63228 > select add #2.406
    63229 
    63230 14 models selected 
    63231 
    63232 > select add #2.405
    63233 
    63234 15 models selected 
    63235 
    63236 > select add #2.404
    63237 
    63238 16 models selected 
    63239 
    63240 > select add #2.361
    63241 
    63242 17 models selected 
    63243 
    63244 > select add #2.360
    63245 
    63246 18 models selected 
    63247 
    63248 > select add #2.387
    63249 
    63250 19 models selected 
    63251 
    63252 > select add #2.386
    63253 
    63254 20 models selected 
    63255 Grouped 20 regions 
    63256 
    63257 > select add #2.449
    63258 
    63259 2 models selected 
    63260 
    63261 > select add #2.419
    63262 
    63263 3 models selected 
    63264 
    63265 > select add #2.444
    63266 
    63267 4 models selected 
    63268 
    63269 > select add #2.428
    63270 
    63271 5 models selected 
    63272 
    63273 > select add #2.448
    63274 
    63275 6 models selected 
    63276 
    63277 > select subtract #2.448
    63278 
    63279 5 models selected 
    63280 
    63281 > select add #2.448
    63282 
    63283 6 models selected 
    63284 
    63285 > select add #2.409
    63286 
    63287 7 models selected 
    63288 
    63289 > select add #2.440
    63290 
    63291 8 models selected 
    63292 
    63293 > select add #2.432
    63294 
    63295 9 models selected 
    63296 
    63297 > select add #2.445
    63298 
    63299 10 models selected 
    63300 
    63301 > select add #2.414
    63302 
    63303 11 models selected 
    63304 
    63305 > select add #2.446
    63306 
    63307 12 models selected 
    63308 
    63309 > select add #2.434
    63310 
    63311 13 models selected 
    63312 
    63313 > select add #2.435
    63314 
    63315 14 models selected 
    63316 
    63317 > select add #2.385
    63318 
    63319 15 models selected 
    63320 Grouped 15 regions 
    63321 
    63322 > select add #2.560
    63323 
    63324 2 models selected 
    63325 
    63326 > select add #2.554
    63327 
    63328 3 models selected 
    63329 
    63330 > select add #2.430
    63331 
    63332 4 models selected 
    63333 
    63334 > select add #2.437
    63335 
    63336 5 models selected 
    63337 
    63338 > select add #2.558
    63339 
    63340 6 models selected 
    63341 
    63342 > select add #2.416
    63343 
    63344 7 models selected 
    63345 
    63346 > select add #2.673
    63347 
    63348 8 models selected 
    63349 
    63350 > select add #2.776
    63351 
    63352 9 models selected 
    63353 Grouped 9 regions 
    63354 
    63355 > select clear
    63356 
    63357 Showing 351 region surfaces 
    63358 
    63359 > select #2.61
    63360 
    63361 1 model selected 
    63362 
    63363 > select add #2.78
    63364 
    63365 2 models selected 
    63366 
    63367 > select add #2.59
    63368 
    63369 3 models selected 
    63370 
    63371 > select add #2.42
    63372 
    63373 4 models selected 
    63374 
    63375 > select add #2.45
    63376 
    63377 5 models selected 
    63378 
    63379 > select add #2.197
    63380 
    63381 6 models selected 
    63382 
    63383 > select add #2.36
    63384 
    63385 7 models selected 
    63386 Ungrouped to 14 regions 
    63387 Ungrouped to 10 regions 
    63388 
    63389 > select #2.38
    63390 
    63391 1 model selected 
    63392 
    63393 > select add #2.37
    63394 
    63395 2 models selected 
    63396 
    63397 > select add #2.43
    63398 
    63399 3 models selected 
    63400 
    63401 > select add #2.41
    63402 
    63403 4 models selected 
    63404 Ungrouped to 8 regions 
    63405 
    63406 > select #2.53
    63407 
    63408 1 model selected 
    63409 
    63410 > select add #2.44
    63411 
    63412 2 models selected 
    63413 
    63414 > select add #2.49
    63415 
    63416 3 models selected 
    63417 Ungrouped to 7 regions 
    63418 Ungrouped to 2 regions 
    63419 Ungrouped to 0 regions 
    63420 
    63421 > select #2.14
    63422 
    63423 1 model selected 
    63424 
    63425 > select add #2.161
    63426 
    63427 2 models selected 
    63428 Grouped 2 regions 
    63429 
    63430 > select clear
    63431 
    63432 > select #2.270
    63433 
    63434 1 model selected 
    63435 
    63436 > select add #2.151
    63437 
    63438 2 models selected 
    63439 
    63440 > select add #2.200
    63441 
    63442 3 models selected 
    63443 
    63444 > select add #2.42
    63445 
    63446 4 models selected 
    63447 
    63448 > select add #2.78
    63449 
    63450 5 models selected 
    63451 
    63452 > select add #2.255
    63453 
    63454 6 models selected 
    63455 
    63456 > select add #2.238
    63457 
    63458 7 models selected 
    63459 
    63460 > select add #2.267
    63461 
    63462 8 models selected 
    63463 
    63464 > select add #2.166
    63465 
    63466 9 models selected 
    63467 
    63468 > select add #2.49
    63469 
    63470 10 models selected 
    63471 
    63472 > select add #2.278
    63473 
    63474 11 models selected 
    63475 
    63476 > select add #2.43
    63477 
    63478 12 models selected 
    63479 
    63480 > select add #2.38
    63481 
    63482 13 models selected 
    63483 
    63484 > select add #2.258
    63485 
    63486 14 models selected 
    63487 
    63488 > select add #2.256
    63489 
    63490 15 models selected 
    63491 
    63492 > select add #2.59
    63493 
    63494 16 models selected 
    63495 
    63496 > select add #2.235
    63497 
    63498 17 models selected 
    63499 Ungrouped to 0 regions 
    63500 
    63501 > select #2.14
    63502 
    63503 1 model selected 
    63504 Showing 371 region surfaces 
    63505 
    63506 > select clear
    63507 
    63508 > select #2.192
    63509 
    63510 1 model selected 
    63511 
    63512 > select clear
    63513 
    63514 > select #2.192
    63515 
    63516 1 model selected 
    63517 Ungrouped to 12 regions 
    63518 Ungrouped to 39 regions 
    63519 Ungrouped to 41 regions 
    63520 Ungrouped to 8 regions 
    63521 
    63522 > select #2.14
    63523 
    63524 1 model selected 
    63525 
    63526 > select add #2.154
    63527 
    63528 2 models selected 
    63529 
    63530 > ui tool show "Side View"
    63531 
    63532 > select #2.154
    63533 
    63534 1 model selected 
    63535 Ungrouped to 15 regions 
    63536 
    63537 > select clear
    63538 
    63539 > select #2.356
    63540 
    63541 1 model selected 
    63542 
    63543 > select add #2.397
    63544 
    63545 2 models selected 
    63546 
    63547 > select add #2.418
    63548 
    63549 3 models selected 
    63550 
    63551 > select add #2.414
    63552 
    63553 4 models selected 
    63554 
    63555 > select add #2.14
    63556 
    63557 5 models selected 
    63558 
    63559 > select add #2.351
    63560 
    63561 6 models selected 
    63562 Grouped 6 regions 
    63563 
    63564 > select clear
    63565 
    63566 > select #2.14
    63567 
    63568 1 model selected 
    63569 Showing 446 region surfaces 
    63570 
    63571 > select clear
    63572 
    63573 > select #2.14
    63574 
    63575 1 model selected 
    63576 Opened
    63577 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    63578 as #29, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    63579 
    63580 The cached device pixel ratio value was stale on window expose. Please file a
    63581 QTBUG which explains how to reproduce. 
    63582 
    63583 > save /Users/shoichitachiyama/Desktop/tmp/Rod.mrc models #29
    63584 
    63585 Opened
    63586 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    63587 as #30, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    63588 
    63589 The cached device pixel ratio value was stale on window expose. Please file a
    63590 QTBUG which explains how to reproduce. 
    63591 
    63592 Segmenting
    63593 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    63594 density threshold 0.010668 
    63595 Showing 224 region surfaces 
    63596 2302 watershed regions, grouped to 224 regions 
    63597 Showing
    63598 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    63599 - 224 regions, 224 surfaces 
    63600 
    63601 > hide #!29 models
    63602 
    63603 > hide #!30 models
    63604 
    63605 Drag select of 3226, 3212, 3256, 3027, 3227, 3233, 3261, 3250, 3090, 3224,
    63606 3201, 3202, 3272, 3066, 3239, 3232, 3032, 3217, 3216, 3207, 3203, 3039, 3263,
    63607 3236, 3243, 3244, 3253, 2719, 3285, 3237, 3282, 3140, 2156, 3254, 3260, 3123,
    63608 3241, 2929, 2844, 2646, 3163, 3258, 2136, 2193, 3221, 3252, 3257, 2957, 2279,
    63609 2195, 2200, 2190, 2146, 2208, 2248, 2215 
    63610 Opened
    63611 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    63612 as #31, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    63613 Segmenting
    63614 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    63615 density threshold 0.010668 
    63616 Showing 168 region surfaces 
    63617 1897 watershed regions, grouped to 168 regions 
    63618 Showing
    63619 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    63620 - 168 regions, 168 surfaces 
    63621 
    63622 > select #2.84
    63623 
    63624 1 model selected 
    63625 
    63626 > select add #2.91
    63627 
    63628 2 models selected 
    63629 
    63630 > select add #2.66
    63631 
    63632 3 models selected 
    63633 
    63634 > select add #2.83
    63635 
    63636 4 models selected 
    63637 
    63638 > select add #2.50
    63639 
    63640 5 models selected 
    63641 
    63642 > select add #2.73
    63643 
    63644 6 models selected 
    63645 
    63646 > select add #2.93
    63647 
    63648 7 models selected 
    63649 
    63650 > select add #2.52
    63651 
    63652 8 models selected 
    63653 
    63654 > select add #2.48
    63655 
    63656 9 models selected 
    63657 
    63658 > select add #2.75
    63659 
    63660 10 models selected 
    63661 
    63662 > select add #2.43
    63663 
    63664 11 models selected 
    63665 
    63666 > select #2.70
    63667 
    63668 1 model selected 
    63669 
    63670 > select add #2.87
    63671 
    63672 2 models selected 
    63673 
    63674 > select add #2.88
    63675 
    63676 3 models selected 
    63677 
    63678 > select add #2.72
    63679 
    63680 4 models selected 
    63681 
    63682 > select add #2.76
    63683 
    63684 5 models selected 
    63685 
    63686 > select add #2.94
    63687 
    63688 6 models selected 
    63689 
    63690 > select add #2.97
    63691 
    63692 7 models selected 
    63693 
    63694 > select add #2.77
    63695 
    63696 8 models selected 
    63697 
    63698 > select add #2.86
    63699 
    63700 9 models selected 
    63701 
    63702 > select add #2.90
    63703 
    63704 10 models selected 
    63705 
    63706 > select add #2.82
    63707 
    63708 11 models selected 
    63709 
    63710 > select add #2.81
    63711 
    63712 12 models selected 
    63713 
    63714 > select add #2.74
    63715 
    63716 13 models selected 
    63717 
    63718 > select add #2.71
    63719 
    63720 14 models selected 
    63721 
    63722 > select add #2.89
    63723 
    63724 15 models selected 
    63725 
    63726 > select add #2.80
    63727 
    63728 16 models selected 
    63729 
    63730 > select add #2.85
    63731 
    63732 17 models selected 
    63733 Grouped 17 regions 
    63734 
    63735 > hide #!31 models
    63736 
    63737 > select #2.45
    63738 
    63739 1 model selected 
    63740 
    63741 > select add #2.58
    63742 
    63743 2 models selected 
    63744 
    63745 > select add #2.57
    63746 
    63747 3 models selected 
    63748 
    63749 > select add #2.60
    63750 
    63751 4 models selected 
    63752 
    63753 > select add #2.121
    63754 
    63755 5 models selected 
    63756 
    63757 > select add #2.134
    63758 
    63759 6 models selected 
    63760 
    63761 > select add #2.53
    63762 
    63763 7 models selected 
    63764 
    63765 > select add #2.64
    63766 
    63767 8 models selected 
    63768 
    63769 > select add #2.110
    63770 
    63771 9 models selected 
    63772 
    63773 > select add #2.112
    63774 
    63775 10 models selected 
    63776 
    63777 > select add #2.67
    63778 
    63779 11 models selected 
    63780 
    63781 > select add #2.43
    63782 
    63783 12 models selected 
    63784 
    63785 > select add #2.122
    63786 
    63787 13 models selected 
    63788 
    63789 > select add #2.44
    63790 
    63791 14 models selected 
    63792 
    63793 > select add #2.56
    63794 
    63795 15 models selected 
    63796 
    63797 > select add #2.47
    63798 
    63799 16 models selected 
    63800 
    63801 > select add #2.49
    63802 
    63803 17 models selected 
    63804 Ungrouped to 40 regions 
    63805 
    63806 > select #2.74
    63807 
    63808 1 model selected 
    63809 
    63810 > select add #2.70
    63811 
    63812 2 models selected 
    63813 
    63814 > select add #2.188
    63815 
    63816 3 models selected 
    63817 
    63818 > select add #2.88
    63819 
    63820 4 models selected 
    63821 
    63822 > select add #2.90
    63823 
    63824 5 models selected 
    63825 
    63826 > select add #2.85
    63827 
    63828 6 models selected 
    63829 
    63830 > select add #2.170
    63831 
    63832 7 models selected 
    63833 
    63834 > select add #2.184
    63835 
    63836 8 models selected 
    63837 
    63838 > select add #2.80
    63839 
    63840 9 models selected 
    63841 
    63842 > select add #2.190
    63843 
    63844 10 models selected 
    63845 
    63846 > select add #2.177
    63847 
    63848 11 models selected 
    63849 
    63850 > select add #2.174
    63851 
    63852 12 models selected 
    63853 
    63854 > select add #2.183
    63855 
    63856 13 models selected 
    63857 
    63858 > select add #2.76
    63859 
    63860 14 models selected 
    63861 Grouped 14 regions 
    63862 
    63863 > select #2.97
    63864 
    63865 1 model selected 
    63866 
    63867 > select add #2.180
    63868 
    63869 2 models selected 
    63870 
    63871 > select add #2.192
    63872 
    63873 3 models selected 
    63874 
    63875 > select add #2.179
    63876 
    63877 4 models selected 
    63878 Ungrouped to 10 regions 
    63879 
    63880 > select clear
    63881 
    63882 > select #2.60
    63883 
    63884 1 model selected 
    63885 
    63886 > select add #2.57
    63887 
    63888 2 models selected 
    63889 
    63890 > select add #2.47
    63891 
    63892 3 models selected 
    63893 
    63894 > select add #2.45
    63895 
    63896 4 models selected 
    63897 
    63898 > select add #2.43
    63899 
    63900 5 models selected 
    63901 Grouped 5 regions 
    63902 
    63903 > select clear
    63904 
    63905 > select #2.43
    63906 
    63907 1 model selected 
    63908 
    63909 > select #2.84
    63910 
    63911 1 model selected 
    63912 
    63913 > select add #2.178
    63914 
    63915 2 models selected 
    63916 
    63917 > select add #2.99
    63918 
    63919 3 models selected 
    63920 
    63921 > select add #2.96
    63922 
    63923 4 models selected 
    63924 
    63925 > select add #2.98
    63926 
    63927 5 models selected 
    63928 
    63929 > select add #2.191
    63930 
    63931 6 models selected 
    63932 
    63933 > select add #2.78
    63934 
    63935 7 models selected 
    63936 
    63937 > select add #2.181
    63938 
    63939 8 models selected 
    63940 
    63941 > select add #2.75
    63942 
    63943 9 models selected 
    63944 
    63945 > select add #2.48
    63946 
    63947 10 models selected 
    63948 
    63949 > select add #2.52
    63950 
    63951 11 models selected 
    63952 
    63953 > select add #2.93
    63954 
    63955 12 models selected 
    63956 
    63957 > select add #2.73
    63958 
    63959 13 models selected 
    63960 
    63961 > select add #2.50
    63962 
    63963 14 models selected 
    63964 
    63965 > select add #2.83
    63966 
    63967 15 models selected 
    63968 
    63969 > select add #2.66
    63970 
    63971 16 models selected 
    63972 
    63973 > select add #2.91
    63974 
    63975 17 models selected 
    63976 Ungrouped to 35 regions 
    63977 
    63978 > select #2.76
    63979 
    63980 1 model selected 
    63981 
    63982 > select add #2.121
    63983 
    63984 2 models selected 
    63985 
    63986 > select add #2.174
    63987 
    63988 3 models selected 
    63989 
    63990 > select add #2.110
    63991 
    63992 4 models selected 
    63993 
    63994 > select add #2.88
    63995 
    63996 5 models selected 
    63997 
    63998 > select add #2.195
    63999 
    64000 6 models selected 
    64001 
    64002 > select add #2.45
    64003 
    64004 7 models selected 
    64005 
    64006 > select add #2.60
    64007 
    64008 8 models selected 
    64009 
    64010 > select add #2.97
    64011 
    64012 9 models selected 
    64013 
    64014 > select add #2.196
    64015 
    64016 10 models selected 
    64017 
    64018 > select add #2.193
    64019 
    64020 11 models selected 
    64021 
    64022 > select add #2.170
    64023 
    64024 12 models selected 
    64025 
    64026 > select add #2.74
    64027 
    64028 13 models selected 
    64029 
    64030 > select add #2.198
    64031 
    64032 14 models selected 
    64033 
    64034 > select add #2.183
    64035 
    64036 15 models selected 
    64037 
    64038 > select add #2.188
    64039 
    64040 16 models selected 
    64041 
    64042 > select add #2.180
    64043 
    64044 17 models selected 
    64045 Grouped 17 regions 
    64046 
    64047 > select clear
    64048 
    64049 > select #2.45
    64050 
    64051 1 model selected 
    64052 Opened
    64053 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    64054 as #32, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    64055 
    64056 The cached device pixel ratio value was stale on window expose. Please file a
    64057 QTBUG which explains how to reproduce. 
    64058 
    64059 > save /Users/shoichitachiyama/Desktop/tmp/FliL.mrc models #32
    64060 
    64061 Opened
    64062 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    64063 as #33, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    64064 
    64065 > hide #!32 models
    64066 
    64067 > hide #!33 models
    64068 
    64069 Segmenting
    64070 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    64071 density threshold 0.010668 
    64072 Showing 171 region surfaces 
    64073 1880 watershed regions, grouped to 171 regions 
    64074 Showing
    64075 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    64076 - 171 regions, 171 surfaces 
    64077 
    64078 > show #!32 models
    64079 
    64080 > show #!29 models
    64081 
    64082 > show #!27 models
    64083 
    64084 > show #!25 models
    64085 
    64086 > hide #!25 models
    64087 
    64088 > show #!24 models
    64089 
    64090 > hide #!24 models
    64091 
    64092 > show #!24 models
    64093 
    64094 > hide #!24 models
    64095 
    64096 > show #!25 models
    64097 
    64098 > hide #!25 models
    64099 
    64100 > hide #!27 models
    64101 
    64102 > hide #!29 models
    64103 
    64104 > hide #!32 models
    64105 
    64106 > select #2.152
    64107 
    64108 1 model selected 
    64109 
    64110 > select add #2.138
    64111 
    64112 2 models selected 
    64113 
    64114 > select add #2.154
    64115 
    64116 3 models selected 
    64117 
    64118 > select add #2.139
    64119 
    64120 4 models selected 
    64121 
    64122 > select add #2.149
    64123 
    64124 5 models selected 
    64125 
    64126 > select add #2.147
    64127 
    64128 6 models selected 
    64129 
    64130 > select add #2.50
    64131 
    64132 7 models selected 
    64133 
    64134 > select add #2.97
    64135 
    64136 8 models selected 
    64137 
    64138 > select add #2.105
    64139 
    64140 9 models selected 
    64141 
    64142 > select add #2.141
    64143 
    64144 10 models selected 
    64145 
    64146 > select add #2.146
    64147 
    64148 11 models selected 
    64149 
    64150 > select add #2.153
    64151 
    64152 12 models selected 
    64153 
    64154 > select add #2.142
    64155 
    64156 13 models selected 
    64157 Ungrouped to 26 regions 
    64158 Ungrouped to 15 regions 
    64159 Ungrouped to 2 regions 
    64160 Ungrouped to 0 regions 
    64161 
    64162 > select #2.194
    64163 
    64164 1 model selected 
    64165 
    64166 > select add #2.141
    64167 
    64168 2 models selected 
    64169 
    64170 > select add #2.180
    64171 
    64172 3 models selected 
    64173 
    64174 > select add #2.152
    64175 
    64176 4 models selected 
    64177 
    64178 > select add #2.97
    64179 
    64180 5 models selected 
    64181 
    64182 > select add #2.154
    64183 
    64184 6 models selected 
    64185 
    64186 > select add #2.198
    64187 
    64188 7 models selected 
    64189 
    64190 > select add #2.146
    64191 
    64192 8 models selected 
    64193 
    64194 > select add #2.138
    64195 
    64196 9 models selected 
    64197 
    64198 > select add #2.174
    64199 
    64200 10 models selected 
    64201 
    64202 > select add #2.182
    64203 
    64204 11 models selected 
    64205 
    64206 > select add #2.192
    64207 
    64208 12 models selected 
    64209 
    64210 > select add #2.197
    64211 
    64212 13 models selected 
    64213 
    64214 > select add #2.177
    64215 
    64216 14 models selected 
    64217 
    64218 > select add #2.191
    64219 
    64220 15 models selected 
    64221 
    64222 > select add #2.178
    64223 
    64224 16 models selected 
    64225 
    64226 > select add #2.185
    64227 
    64228 17 models selected 
    64229 
    64230 > select add #2.85
    64231 
    64232 18 models selected 
    64233 
    64234 > select add #2.71
    64235 
    64236 19 models selected 
    64237 
    64238 > select add #2.77
    64239 
    64240 20 models selected 
    64241 
    64242 > select add #2.81
    64243 
    64244 21 models selected 
    64245 
    64246 > select add #2.75
    64247 
    64248 22 models selected 
    64249 
    64250 > select add #2.74
    64251 
    64252 23 models selected 
    64253 
    64254 > select add #2.69
    64255 
    64256 24 models selected 
    64257 
    64258 > select add #2.67
    64259 
    64260 25 models selected 
    64261 
    64262 > select add #2.80
    64263 
    64264 26 models selected 
    64265 
    64266 > select add #2.73
    64267 
    64268 27 models selected 
    64269 
    64270 > select add #2.76
    64271 
    64272 28 models selected 
    64273 
    64274 > select add #2.66
    64275 
    64276 29 models selected 
    64277 
    64278 > select add #2.78
    64279 
    64280 30 models selected 
    64281 
    64282 > select add #2.79
    64283 
    64284 31 models selected 
    64285 
    64286 > select add #2.68
    64287 
    64288 32 models selected 
    64289 
    64290 > select add #2.70
    64291 
    64292 33 models selected 
    64293 
    64294 > select add #2.83
    64295 
    64296 34 models selected 
    64297 Grouped 34 regions 
    64298 
    64299 > select add #2.143
    64300 
    64301 2 models selected 
    64302 
    64303 > select add #2.158
    64304 
    64305 3 models selected 
    64306 
    64307 > select add #2.119
    64308 
    64309 4 models selected 
    64310 
    64311 > select add #2.148
    64312 
    64313 5 models selected 
    64314 
    64315 > select add #2.144
    64316 
    64317 6 models selected 
    64318 
    64319 > select add #2.101
    64320 
    64321 7 models selected 
    64322 
    64323 > select add #2.160
    64324 
    64325 8 models selected 
    64326 
    64327 > select add #2.161
    64328 
    64329 9 models selected 
    64330 
    64331 > select add #2.168
    64332 
    64333 10 models selected 
    64334 
    64335 > select add #2.140
    64336 
    64337 11 models selected 
    64338 
    64339 > select add #2.145
    64340 
    64341 12 models selected 
    64342 
    64343 > select add #2.157
    64344 
    64345 13 models selected 
    64346 
    64347 > select add #2.136
    64348 
    64349 14 models selected 
    64350 
    64351 > select add #2.135
    64352 
    64353 15 models selected 
    64354 
    64355 > select add #2.162
    64356 
    64357 16 models selected 
    64358 
    64359 > select add #2.150
    64360 
    64361 17 models selected 
    64362 
    64363 > select add #2.151
    64364 
    64365 18 models selected 
    64366 
    64367 > select add #2.176
    64368 
    64369 19 models selected 
    64370 
    64371 > select add #2.190
    64372 
    64373 20 models selected 
    64374 
    64375 > select add #2.179
    64376 
    64377 21 models selected 
    64378 
    64379 > select add #2.184
    64380 
    64381 22 models selected 
    64382 
    64383 > select add #2.195
    64384 
    64385 23 models selected 
    64386 
    64387 > select add #2.139
    64388 
    64389 24 models selected 
    64390 
    64391 > select add #2.172
    64392 
    64393 25 models selected 
    64394 
    64395 > select add #2.149
    64396 
    64397 26 models selected 
    64398 
    64399 > select add #2.50
    64400 
    64401 27 models selected 
    64402 
    64403 > select add #2.153
    64404 
    64405 28 models selected 
    64406 
    64407 > select add #2.199
    64408 
    64409 29 models selected 
    64410 
    64411 > select add #2.142
    64412 
    64413 30 models selected 
    64414 
    64415 > select add #2.173
    64416 
    64417 31 models selected 
    64418 
    64419 > select add #2.175
    64420 
    64421 32 models selected 
    64422 
    64423 > select add #2.183
    64424 
    64425 33 models selected 
    64426 
    64427 > select add #2.193
    64428 
    64429 34 models selected 
    64430 
    64431 > select add #2.196
    64432 
    64433 35 models selected 
    64434 
    64435 > select subtract #2.176
    64436 
    64437 34 models selected 
    64438 
    64439 > select subtract #2.190
    64440 
    64441 33 models selected 
    64442 
    64443 > select add #2.190
    64444 
    64445 34 models selected 
    64446 
    64447 > select subtract #2.190
    64448 
    64449 33 models selected 
    64450 
    64451 > select add #2.176
    64452 
    64453 34 models selected 
    64454 
    64455 > select add #2.190
    64456 
    64457 35 models selected 
    64458 
    64459 > select add #2.167
    64460 
    64461 36 models selected 
    64462 
    64463 > select add #2.156
    64464 
    64465 37 models selected 
    64466 
    64467 > select add #2.165
    64468 
    64469 38 models selected 
    64470 
    64471 > select add #2.163
    64472 
    64473 39 models selected 
    64474 
    64475 > select add #2.170
    64476 
    64477 40 models selected 
    64478 
    64479 > select add #2.155
    64480 
    64481 41 models selected 
    64482 
    64483 > select add #2.108
    64484 
    64485 42 models selected 
    64486 
    64487 > select add #2.1
    64488 
    64489 43 models selected 
    64490 
    64491 > select add #2.117
    64492 
    64493 44 models selected 
    64494 
    64495 > select add #2.164
    64496 
    64497 45 models selected 
    64498 
    64499 > select add #2.169
    64500 
    64501 46 models selected 
    64502 
    64503 > select add #2.159
    64504 
    64505 47 models selected 
    64506 
    64507 > select add #2.129
    64508 
    64509 48 models selected 
    64510 
    64511 > select add #2.166
    64512 
    64513 49 models selected 
    64514 
    64515 > select clear
    64516 
    64517 > select #2.1
    64518 
    64519 1 model selected 
    64520 Ungrouped to 12 regions 
    64521 Ungrouped to 39 regions 
    64522 Ungrouped to 41 regions 
    64523 
    64524 > select #2.232
    64525 
    64526 1 model selected 
    64527 
    64528 > select add #2.215
    64529 
    64530 2 models selected 
    64531 
    64532 > select add #2.233
    64533 
    64534 3 models selected 
    64535 
    64536 > select add #2.185
    64537 
    64538 4 models selected 
    64539 
    64540 > select add #2.70
    64541 
    64542 5 models selected 
    64543 
    64544 > select add #2.219
    64545 
    64546 6 models selected 
    64547 
    64548 > select add #2.78
    64549 
    64550 7 models selected 
    64551 
    64552 > select add #2.211
    64553 
    64554 8 models selected 
    64555 
    64556 > select #2.228
    64557 
    64558 1 model selected 
    64559 
    64560 > select add #2.231
    64561 
    64562 2 models selected 
    64563 
    64564 > select add #2.230
    64565 
    64566 3 models selected 
    64567 
    64568 > select add #2.229
    64569 
    64570 4 models selected 
    64571 
    64572 > select add #2.73
    64573 
    64574 5 models selected 
    64575 
    64576 > select add #2.75
    64577 
    64578 6 models selected 
    64579 
    64580 > select add #2.237
    64581 
    64582 7 models selected 
    64583 
    64584 > select add #2.235
    64585 
    64586 8 models selected 
    64587 
    64588 > select add #2.223
    64589 
    64590 9 models selected 
    64591 
    64592 > select add #2.224
    64593 
    64594 10 models selected 
    64595 
    64596 > select add #2.138
    64597 
    64598 11 models selected 
    64599 
    64600 > select add #2.226
    64601 
    64602 12 models selected 
    64603 
    64604 > select add #2.239
    64605 
    64606 13 models selected 
    64607 
    64608 > select add #2.240
    64609 
    64610 14 models selected 
    64611 
    64612 > select add #2.212
    64613 
    64614 15 models selected 
    64615 
    64616 > select add #2.79
    64617 
    64618 16 models selected 
    64619 
    64620 > select add #2.220
    64621 
    64622 17 models selected 
    64623 
    64624 > select add #2.71
    64625 
    64626 18 models selected 
    64627 
    64628 > select add #2.178
    64629 
    64630 19 models selected 
    64631 
    64632 > select add #2.182
    64633 
    64634 20 models selected 
    64635 
    64636 > select add #2.213
    64637 
    64638 21 models selected 
    64639 
    64640 > select add #2.214
    64641 
    64642 22 models selected 
    64643 
    64644 > select add #2.154
    64645 
    64646 23 models selected 
    64647 
    64648 > select add #2.174
    64649 
    64650 24 models selected 
    64651 
    64652 > select add #2.177
    64653 
    64654 25 models selected 
    64655 
    64656 > select add #2.77
    64657 
    64658 26 models selected 
    64659 
    64660 > select add #2.76
    64661 
    64662 27 models selected 
    64663 
    64664 > select add #2.238
    64665 
    64666 28 models selected 
    64667 
    64668 > select add #2.236
    64669 
    64670 29 models selected 
    64671 
    64672 > select add #2.225
    64673 
    64674 30 models selected 
    64675 
    64676 > select add #2.227
    64677 
    64678 31 models selected 
    64679 
    64680 > select add #2.69
    64681 
    64682 32 models selected 
    64683 
    64684 > select add #2.216
    64685 
    64686 33 models selected 
    64687 
    64688 > select add #2.234
    64689 
    64690 34 models selected 
    64691 
    64692 > select clear
    64693 
    64694 > select add #2.74
    64695 
    64696 1 model selected 
    64697 
    64698 > select add #2.147
    64699 
    64700 2 models selected 
    64701 
    64702 > select add #2.68
    64703 
    64704 3 models selected 
    64705 
    64706 > select add #2.204
    64707 
    64708 4 models selected 
    64709 
    64710 > select add #2.194
    64711 
    64712 5 models selected 
    64713 
    64714 > select add #2.218
    64715 
    64716 6 models selected 
    64717 
    64718 > select add #2.80
    64719 
    64720 7 models selected 
    64721 
    64722 > select add #2.202
    64723 
    64724 8 models selected 
    64725 
    64726 > select add #2.198
    64727 
    64728 9 models selected 
    64729 
    64730 > select add #2.187
    64731 
    64732 10 models selected 
    64733 
    64734 > select add #2.189
    64735 
    64736 11 models selected 
    64737 
    64738 > select add #2.188
    64739 
    64740 12 models selected 
    64741 
    64742 > select add #2.85
    64743 
    64744 13 models selected 
    64745 
    64746 > select add #2.97
    64747 
    64748 14 models selected 
    64749 
    64750 > select add #2.222
    64751 
    64752 15 models selected 
    64753 
    64754 > select add #2.209
    64755 
    64756 16 models selected 
    64757 
    64758 > select add #2.210
    64759 
    64760 17 models selected 
    64761 
    64762 > select #2.161
    64763 
    64764 1 model selected 
    64765 
    64766 > select add #2.168
    64767 
    64768 2 models selected 
    64769 
    64770 > select add #2.140
    64771 
    64772 3 models selected 
    64773 
    64774 > select add #2.117
    64775 
    64776 4 models selected 
    64777 
    64778 > select add #2.164
    64779 
    64780 5 models selected 
    64781 
    64782 > select add #2.221
    64783 
    64784 6 models selected 
    64785 
    64786 > select add #2.160
    64787 
    64788 7 models selected 
    64789 
    64790 > select add #2.101
    64791 
    64792 8 models selected 
    64793 
    64794 > select add #2.159
    64795 
    64796 9 models selected 
    64797 
    64798 > select add #2.129
    64799 
    64800 10 models selected 
    64801 
    64802 > select add #2.144
    64803 
    64804 11 models selected 
    64805 
    64806 > select add #2.166
    64807 
    64808 12 models selected 
    64809 
    64810 > select add #2.119
    64811 
    64812 13 models selected 
    64813 
    64814 > select add #2.148
    64815 
    64816 14 models selected 
    64817 
    64818 > select add #2.167
    64819 
    64820 15 models selected 
    64821 
    64822 > select add #2.156
    64823 
    64824 16 models selected 
    64825 
    64826 > select add #2.158
    64827 
    64828 17 models selected 
    64829 
    64830 > select add #2.143
    64831 
    64832 18 models selected 
    64833 
    64834 > select add #2.165
    64835 
    64836 19 models selected 
    64837 
    64838 > select add #2.151
    64839 
    64840 20 models selected 
    64841 
    64842 > select add #2.1
    64843 
    64844 21 models selected 
    64845 
    64846 > select add #2.163
    64847 
    64848 22 models selected 
    64849 
    64850 > select add #2.155
    64851 
    64852 23 models selected 
    64853 
    64854 > select add #2.217
    64855 
    64856 24 models selected 
    64857 
    64858 > select subtract #2.151
    64859 
    64860 23 models selected 
    64861 
    64862 > select add #2.150
    64863 
    64864 24 models selected 
    64865 
    64866 > select add #2.151
    64867 
    64868 25 models selected 
    64869 
    64870 > select add #2.162
    64871 
    64872 26 models selected 
    64873 
    64874 > select add #2.135
    64875 
    64876 27 models selected 
    64877 
    64878 > select add #2.108
    64879 
    64880 28 models selected 
    64881 
    64882 > select add #2.67
    64883 
    64884 29 models selected 
    64885 
    64886 > select add #2.136
    64887 
    64888 30 models selected 
    64889 
    64890 > select add #2.157
    64891 
    64892 31 models selected 
    64893 
    64894 > select add #2.145
    64895 
    64896 32 models selected 
    64897 
    64898 > select add #2.199
    64899 
    64900 33 models selected 
    64901 
    64902 > select add #2.153
    64903 
    64904 34 models selected 
    64905 
    64906 > select add #2.50
    64907 
    64908 35 models selected 
    64909 
    64910 > select add #2.149
    64911 
    64912 36 models selected 
    64913 
    64914 > select add #2.172
    64915 
    64916 37 models selected 
    64917 
    64918 > select add #2.139
    64919 
    64920 38 models selected 
    64921 
    64922 > select add #2.195
    64923 
    64924 39 models selected 
    64925 
    64926 > select add #2.184
    64927 
    64928 40 models selected 
    64929 
    64930 > select add #2.179
    64931 
    64932 41 models selected 
    64933 
    64934 > select add #2.190
    64935 
    64936 42 models selected 
    64937 
    64938 > select add #2.176
    64939 
    64940 43 models selected 
    64941 
    64942 > select add #2.196
    64943 
    64944 44 models selected 
    64945 
    64946 > select add #2.193
    64947 
    64948 45 models selected 
    64949 
    64950 > select add #2.183
    64951 
    64952 46 models selected 
    64953 
    64954 > select add #2.175
    64955 
    64956 47 models selected 
    64957 Grouped 47 regions 
    64958 
    64959 > select add #2.173
    64960 
    64961 2 models selected 
    64962 
    64963 > select add #2.142
    64964 
    64965 3 models selected 
    64966 Grouped 3 regions 
    64967 
    64968 > select clear
    64969 
    64970 > select #2.169
    64971 
    64972 1 model selected 
    64973 
    64974 > select add #2.170
    64975 
    64976 2 models selected 
    64977 
    64978 > select add #2.1
    64979 
    64980 3 models selected 
    64981 Grouped 3 regions 
    64982 Showing 172 region surfaces 
    64983 
    64984 > select clear
    64985 
    64986 > select #2.1
    64987 
    64988 1 model selected 
    64989 Opened
    64990 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    64991 as #34, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    64992 
    64993 The cached device pixel ratio value was stale on window expose. Please file a
    64994 QTBUG which explains how to reproduce. 
    64995 
    64996 > save /Users/shoichitachiyama/Desktop/tmp/MS-ring.mrc models #34
    64997 
    64998 Opened
    64999 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    65000 as #35, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    65001 Segmenting
    65002 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    65003 density threshold 0.010668 
    65004 Showing 141 region surfaces 
    65005 1780 watershed regions, grouped to 141 regions 
    65006 Showing
    65007 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    65008 - 141 regions, 141 surfaces 
    65009 
    65010 > hide #!34 models
    65011 
    65012 > hide #!35 models
    65013 
    65014 > show #!34 models
    65015 
    65016 The cached device pixel ratio value was stale on window expose. Please file a
    65017 QTBUG which explains how to reproduce. 
    65018 
    65019 > close #34-35
    65020 
    65021 The cached device pixel ratio value was stale on window expose. Please file a
    65022 QTBUG which explains how to reproduce. 
    65023 
    65024 Segmenting
    65025 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    65026 density threshold 0.010668 
    65027 Showing 171 region surfaces 
    65028 1880 watershed regions, grouped to 171 regions 
    65029 Showing
    65030 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    65031 - 171 regions, 171 surfaces 
    65032 
    65033 > select #2.139
    65034 
    65035 1 model selected 
    65036 
    65037 > select add #2.154
    65038 
    65039 2 models selected 
    65040 
    65041 > select add #2.138
    65042 
    65043 3 models selected 
    65044 
    65045 > select add #2.152
    65046 
    65047 4 models selected 
    65048 
    65049 > select add #2.142
    65050 
    65051 5 models selected 
    65052 
    65053 > select add #2.153
    65054 
    65055 6 models selected 
    65056 
    65057 > select add #2.146
    65058 
    65059 7 models selected 
    65060 
    65061 > select add #2.141
    65062 
    65063 8 models selected 
    65064 
    65065 > select add #2.105
    65066 
    65067 9 models selected 
    65068 
    65069 > select add #2.97
    65070 
    65071 10 models selected 
    65072 
    65073 > select add #2.50
    65074 
    65075 11 models selected 
    65076 
    65077 > select add #2.147
    65078 
    65079 12 models selected 
    65080 
    65081 > select add #2.149
    65082 
    65083 13 models selected 
    65084 Ungrouped to 26 regions 
    65085 Ungrouped to 15 regions 
    65086 Ungrouped to 2 regions 
    65087 Ungrouped to 0 regions 
    65088 Ungrouped to 160 regions 
    65089 
    65090 > select #2.180
    65091 
    65092 1 model selected 
    65093 
    65094 > select add #2.194
    65095 
    65096 2 models selected 
    65097 
    65098 > select add #2.176
    65099 
    65100 3 models selected 
    65101 
    65102 > select add #2.192
    65103 
    65104 4 models selected 
    65105 
    65106 > select add #2.174
    65107 
    65108 5 models selected 
    65109 
    65110 > select add #2.182
    65111 
    65112 6 models selected 
    65113 
    65114 > select add #2.190
    65115 
    65116 7 models selected 
    65117 
    65118 > select add #2.184
    65119 
    65120 8 models selected 
    65121 
    65122 > select add #2.188
    65123 
    65124 9 models selected 
    65125 
    65126 > select add #2.178
    65127 
    65128 10 models selected 
    65129 
    65130 > select add #2.50
    65131 
    65132 11 models selected 
    65133 
    65134 > select add #2.139
    65135 
    65136 12 models selected 
    65137 
    65138 > select add #2.105
    65139 
    65140 13 models selected 
    65141 
    65142 > select add #2.153
    65143 
    65144 14 models selected 
    65145 
    65146 > select add #2.142
    65147 
    65148 15 models selected 
    65149 
    65150 > select add #2.172
    65151 
    65152 16 models selected 
    65153 
    65154 > select add #2.198
    65155 
    65156 17 models selected 
    65157 Grouped 17 regions 
    65158 
    65159 > select add #2.149
    65160 
    65161 2 models selected 
    65162 Grouped 2 regions 
    65163 
    65164 > select add #2.181
    65165 
    65166 2 models selected 
    65167 
    65168 > select add #2.199
    65169 
    65170 3 models selected 
    65171 
    65172 > select add #2.173
    65173 
    65174 4 models selected 
    65175 
    65176 > select add #2.147
    65177 
    65178 5 models selected 
    65179 
    65180 > select add #2.154
    65181 
    65182 6 models selected 
    65183 
    65184 > select add #2.138
    65185 
    65186 7 models selected 
    65187 
    65188 > select add #2.141
    65189 
    65190 8 models selected 
    65191 
    65192 > select add #2.97
    65193 
    65194 9 models selected 
    65195 
    65196 > select add #2.152
    65197 
    65198 10 models selected 
    65199 
    65200 > select subtract #2.152
    65201 
    65202 9 models selected 
    65203 
    65204 > select add #2.185
    65205 
    65206 10 models selected 
    65207 
    65208 > select add #2.189
    65209 
    65210 11 models selected 
    65211 
    65212 > select add #2.191
    65213 
    65214 12 models selected 
    65215 
    65216 > select add #2.183
    65217 
    65218 13 models selected 
    65219 
    65220 > select add #2.175
    65221 
    65222 14 models selected 
    65223 
    65224 > select add #2.193
    65225 
    65226 15 models selected 
    65227 
    65228 > select add #2.177
    65229 
    65230 16 models selected 
    65231 
    65232 > select add #2.195
    65233 
    65234 17 models selected 
    65235 
    65236 > select add #2.85
    65237 
    65238 18 models selected 
    65239 
    65240 > select add #2.71
    65241 
    65242 19 models selected 
    65243 
    65244 > select add #2.297
    65245 
    65246 20 models selected 
    65247 
    65248 > select add #2.353
    65249 
    65250 21 models selected 
    65251 
    65252 > select add #2.75
    65253 
    65254 22 models selected 
    65255 
    65256 > select add #2.74
    65257 
    65258 23 models selected 
    65259 
    65260 > select add #2.69
    65261 
    65262 24 models selected 
    65263 
    65264 > select add #2.67
    65265 
    65266 25 models selected 
    65267 
    65268 > select add #2.80
    65269 
    65270 26 models selected 
    65271 
    65272 > select add #2.280
    65273 
    65274 27 models selected 
    65275 
    65276 > select add #2.76
    65277 
    65278 28 models selected 
    65279 
    65280 > select add #2.287
    65281 
    65282 29 models selected 
    65283 
    65284 > select add #2.341
    65285 
    65286 30 models selected 
    65287 
    65288 > select add #2.79
    65289 
    65290 31 models selected 
    65291 
    65292 > select add #2.68
    65293 
    65294 32 models selected 
    65295 
    65296 > select add #2.70
    65297 
    65298 33 models selected 
    65299 
    65300 > select add #2.299
    65301 
    65302 34 models selected 
    65303 
    65304 > select add #2.152
    65305 
    65306 35 models selected 
    65307 
    65308 > select add #2.136
    65309 
    65310 36 models selected 
    65311 
    65312 > select add #2.135
    65313 
    65314 37 models selected 
    65315 
    65316 > select add #2.162
    65317 
    65318 38 models selected 
    65319 
    65320 > select add #2.150
    65321 
    65322 39 models selected 
    65323 
    65324 > select add #2.151
    65325 
    65326 40 models selected 
    65327 
    65328 > select add #2.143
    65329 
    65330 41 models selected 
    65331 
    65332 > select add #2.158
    65333 
    65334 42 models selected 
    65335 
    65336 > select add #2.119
    65337 
    65338 43 models selected 
    65339 
    65340 > select add #2.148
    65341 
    65342 44 models selected 
    65343 
    65344 > select add #2.144
    65345 
    65346 45 models selected 
    65347 
    65348 > select add #2.207
    65349 
    65350 46 models selected 
    65351 
    65352 > select add #2.208
    65353 
    65354 47 models selected 
    65355 
    65356 > select add #2.160
    65357 
    65358 48 models selected 
    65359 
    65360 > select add #2.161
    65361 
    65362 49 models selected 
    65363 
    65364 > select add #2.168
    65365 
    65366 50 models selected 
    65367 
    65368 > select add #2.140
    65369 
    65370 51 models selected 
    65371 
    65372 > select add #2.157
    65373 
    65374 52 models selected 
    65375 
    65376 > select add #2.145
    65377 
    65378 53 models selected 
    65379 
    65380 > select add #2.167
    65381 
    65382 54 models selected 
    65383 
    65384 > select add #2.166
    65385 
    65386 55 models selected 
    65387 
    65388 > select add #2.230
    65389 
    65390 56 models selected 
    65391 
    65392 > select add #2.229
    65393 
    65394 57 models selected 
    65395 
    65396 > select add #2.159
    65397 
    65398 58 models selected 
    65399 
    65400 > select add #2.169
    65401 
    65402 59 models selected 
    65403 
    65404 > select add #2.164
    65405 
    65406 60 models selected 
    65407 
    65408 > select add #2.228
    65409 
    65410 61 models selected 
    65411 
    65412 > select add #2.227
    65413 
    65414 62 models selected 
    65415 
    65416 > select add #2.108
    65417 
    65418 63 models selected 
    65419 
    65420 > select add #2.155
    65421 
    65422 64 models selected 
    65423 
    65424 > select add #2.170
    65425 
    65426 65 models selected 
    65427 
    65428 > select add #2.163
    65429 
    65430 66 models selected 
    65431 
    65432 > select add #2.165
    65433 
    65434 67 models selected 
    65435 
    65436 > select add #2.156
    65437 
    65438 68 models selected 
    65439 
    65440 > select add #2.301
    65441 
    65442 69 models selected 
    65443 
    65444 > select add #2.311
    65445 
    65446 70 models selected 
    65447 
    65448 > select add #2.308
    65449 
    65450 71 models selected 
    65451 
    65452 > select add #2.303
    65453 
    65454 72 models selected 
    65455 
    65456 > select #2.308
    65457 
    65458 1 model selected 
    65459 Ungrouped to 4 regions 
    65460 Ungrouped to 5 regions 
    65461 
    65462 > select clear
    65463 
    65464 > select #2.3
    65465 
    65466 1 model selected 
    65467 
    65468 > select add #2.9
    65469 
    65470 2 models selected 
    65471 
    65472 > select add #2.10
    65473 
    65474 3 models selected 
    65475 
    65476 > select add #2.6
    65477 
    65478 4 models selected 
    65479 
    65480 > select add #2.8
    65481 
    65482 5 models selected 
    65483 
    65484 > select add #2.2
    65485 
    65486 6 models selected 
    65487 
    65488 > select #2.311
    65489 
    65490 1 model selected 
    65491 
    65492 > select add #2.301
    65493 
    65494 2 models selected 
    65495 Ungrouped to 5 regions 
    65496 Ungrouped to 4 regions 
    65497 Ungrouped to 0 regions 
    65498 
    65499 > select #2.4
    65500 
    65501 1 model selected 
    65502 
    65503 > select add #2.14
    65504 
    65505 2 models selected 
    65506 
    65507 > select add #2.12
    65508 
    65509 3 models selected 
    65510 
    65511 > select add #2.17
    65512 
    65513 4 models selected 
    65514 
    65515 > select add #2.18
    65516 
    65517 5 models selected 
    65518 
    65519 > select clear
    65520 
    65521 > select #2.303
    65522 
    65523 1 model selected 
    65524 Ungrouped to 3 regions 
    65525 
    65526 > select clear
    65527 
    65528 > select #2.20
    65529 
    65530 1 model selected 
    65531 Ungrouped to 2 regions 
    65532 
    65533 > select clear
    65534 
    65535 > select #2.22
    65536 
    65537 1 model selected 
    65538 
    65539 > select add #2.11
    65540 
    65541 2 models selected 
    65542 
    65543 > select add #2.13
    65544 
    65545 3 models selected 
    65546 
    65547 > select clear
    65548 
    65549 > select #2.163
    65550 
    65551 1 model selected 
    65552 
    65553 > select subtract #2.163
    65554 
    65555 Nothing selected 
    65556 
    65557 > select #2.156
    65558 
    65559 1 model selected 
    65560 
    65561 > select add #2.165
    65562 
    65563 2 models selected 
    65564 
    65565 > select add #2.163
    65566 
    65567 3 models selected 
    65568 
    65569 > select add #2.170
    65570 
    65571 4 models selected 
    65572 
    65573 > select add #2.155
    65574 
    65575 5 models selected 
    65576 
    65577 > select add #2.108
    65578 
    65579 6 models selected 
    65580 
    65581 > select add #2.227
    65582 
    65583 7 models selected 
    65584 
    65585 > select add #2.228
    65586 
    65587 8 models selected 
    65588 
    65589 > select add #2.164
    65590 
    65591 9 models selected 
    65592 
    65593 > select add #2.169
    65594 
    65595 10 models selected 
    65596 
    65597 > select add #2.159
    65598 
    65599 11 models selected 
    65600 
    65601 > select add #2.229
    65602 
    65603 12 models selected 
    65604 
    65605 > select add #2.230
    65606 
    65607 13 models selected 
    65608 
    65609 > select add #2.166
    65610 
    65611 14 models selected 
    65612 
    65613 > select add #2.167
    65614 
    65615 15 models selected 
    65616 Grouped 15 regions 
    65617 
    65618 > select add #2.16
    65619 
    65620 2 models selected 
    65621 
    65622 > select add #2.5
    65623 
    65624 3 models selected 
    65625 
    65626 > select add #2.158
    65627 
    65628 4 models selected 
    65629 
    65630 > select add #2.119
    65631 
    65632 5 models selected 
    65633 
    65634 > select add #2.23
    65635 
    65636 6 models selected 
    65637 
    65638 > select add #2.7
    65639 
    65640 7 models selected 
    65641 
    65642 > select add #2.143
    65643 
    65644 8 models selected 
    65645 
    65646 > select add #2.151
    65647 
    65648 9 models selected 
    65649 
    65650 > select add #2.150
    65651 
    65652 10 models selected 
    65653 
    65654 > select add #2.162
    65655 
    65656 11 models selected 
    65657 
    65658 > select add #2.135
    65659 
    65660 12 models selected 
    65661 
    65662 > select subtract #2.135
    65663 
    65664 11 models selected 
    65665 
    65666 > select add #2.135
    65667 
    65668 12 models selected 
    65669 
    65670 > select add #2.136
    65671 
    65672 13 models selected 
    65673 
    65674 > select add #2.157
    65675 
    65676 14 models selected 
    65677 
    65678 > select add #2.145
    65679 
    65680 15 models selected 
    65681 
    65682 > select subtract #2.145
    65683 
    65684 14 models selected 
    65685 
    65686 > select add #2.145
    65687 
    65688 15 models selected 
    65689 
    65690 > select add #2.140
    65691 
    65692 16 models selected 
    65693 
    65694 > select add #2.168
    65695 
    65696 17 models selected 
    65697 
    65698 > select add #2.161
    65699 
    65700 18 models selected 
    65701 
    65702 > select add #2.160
    65703 
    65704 19 models selected 
    65705 
    65706 > select add #2.208
    65707 
    65708 20 models selected 
    65709 
    65710 > select add #2.207
    65711 
    65712 21 models selected 
    65713 
    65714 > select add #2.144
    65715 
    65716 22 models selected 
    65717 
    65718 > select add #2.148
    65719 
    65720 23 models selected 
    65721 
    65722 > select add #2.1
    65723 
    65724 24 models selected 
    65725 Grouped 24 regions 
    65726 
    65727 > select clear
    65728 
    65729 > select #2.1
    65730 
    65731 1 model selected 
    65732 
    65733 > select clear
    65734 
    65735 [Repeated 1 time(s)]
    65736 
    65737 > select #2.1
    65738 
    65739 1 model selected 
    65740 Showing 264 region surfaces 
    65741 Opened
    65742 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    65743 as #34, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    65744 
    65745 The cached device pixel ratio value was stale on window expose. Please file a
    65746 QTBUG which explains how to reproduce. 
    65747 
    65748 > save /Users/shoichitachiyama/Desktop/tmp/MS-ring.mrc models #34
    65749 
    65750 Opened
    65751 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    65752 as #35, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    65753 Segmenting
    65754 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    65755 density threshold 0.010668 
    65756 Showing 140 region surfaces 
    65757 1779 watershed regions, grouped to 140 regions 
    65758 Showing
    65759 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    65760 - 140 regions, 140 surfaces 
    65761 
    65762 > hide #!34 models
    65763 
    65764 > hide #!35 models
    65765 
    65766 > select #2.72
    65767 
    65768 1 model selected 
    65769 
    65770 > select add #2.76
    65771 
    65772 2 models selected 
    65773 
    65774 > select add #2.65
    65775 
    65776 3 models selected 
    65777 
    65778 > select add #2.77
    65779 
    65780 4 models selected 
    65781 
    65782 > select add #2.78
    65783 
    65784 5 models selected 
    65785 
    65786 > select add #2.67
    65787 
    65788 6 models selected 
    65789 
    65790 > select add #2.69
    65791 
    65792 7 models selected 
    65793 
    65794 > select add #2.82
    65795 
    65796 8 models selected 
    65797 
    65798 > select add #2.84
    65799 
    65800 9 models selected 
    65801 
    65802 > select add #2.70
    65803 
    65804 10 models selected 
    65805 
    65806 > select add #2.75
    65807 
    65808 11 models selected 
    65809 
    65810 > select add #2.80
    65811 
    65812 12 models selected 
    65813 
    65814 > select add #2.74
    65815 
    65816 13 models selected 
    65817 
    65818 > select add #2.73
    65819 
    65820 14 models selected 
    65821 
    65822 > select add #2.68
    65823 
    65824 15 models selected 
    65825 
    65826 > select add #2.66
    65827 
    65828 16 models selected 
    65829 
    65830 > select add #2.79
    65831 
    65832 17 models selected 
    65833 Ungrouped to 43 regions 
    65834 Ungrouped to 36 regions 
    65835 Ungrouped to 14 regions 
    65836 Ungrouped to 0 regions 
    65837 
    65838 > select #2.79
    65839 
    65840 1 model selected 
    65841 
    65842 > select add #2.152
    65843 
    65844 2 models selected 
    65845 
    65846 > select #2.183
    65847 
    65848 1 model selected 
    65849 
    65850 > select #2.70
    65851 
    65852 1 model selected 
    65853 
    65854 > select add #2.183
    65855 
    65856 2 models selected 
    65857 Grouped 2 regions 
    65858 Ungrouped to 2 regions 
    65859 Ungrouped to 0 regions 
    65860 
    65861 > select #2.146
    65862 
    65863 1 model selected 
    65864 
    65865 > select add #2.158
    65866 
    65867 2 models selected 
    65868 
    65869 > select add #2.143
    65870 
    65871 3 models selected 
    65872 
    65873 > select add #2.84
    65874 
    65875 4 models selected 
    65876 Ungrouped to 0 regions 
    65877 
    65878 > select #2.79
    65879 
    65880 1 model selected 
    65881 
    65882 > select add #2.178
    65883 
    65884 2 models selected 
    65885 
    65886 > select add #2.68
    65887 
    65888 3 models selected 
    65889 
    65890 > select add #2.190
    65891 
    65892 4 models selected 
    65893 
    65894 > select add #2.146
    65895 
    65896 5 models selected 
    65897 
    65898 > select add #2.158
    65899 
    65900 6 models selected 
    65901 
    65902 > select add #2.143
    65903 
    65904 7 models selected 
    65905 
    65906 > select add #2.84
    65907 
    65908 8 models selected 
    65909 
    65910 > select add #2.77
    65911 
    65912 9 models selected 
    65913 
    65914 > select add #2.78
    65915 
    65916 10 models selected 
    65917 
    65918 > select add #2.200
    65919 
    65920 11 models selected 
    65921 
    65922 > select add #2.198
    65923 
    65924 12 models selected 
    65925 
    65926 > select add #2.165
    65927 
    65928 13 models selected 
    65929 
    65930 > select add #2.160
    65931 
    65932 14 models selected 
    65933 
    65934 > select add #2.151
    65935 
    65936 15 models selected 
    65937 
    65938 > select add #2.174
    65939 
    65940 16 models selected 
    65941 
    65942 > select add #2.187
    65943 
    65944 17 models selected 
    65945 
    65946 > select subtract #2.79
    65947 
    65948 16 models selected 
    65949 
    65950 > select add #2.79
    65951 
    65952 17 models selected 
    65953 Ungrouped to 0 regions 
    65954 
    65955 > select #2.79
    65956 
    65957 1 model selected 
    65958 
    65959 > select add #2.187
    65960 
    65961 2 models selected 
    65962 
    65963 > select add #2.174
    65964 
    65965 3 models selected 
    65966 
    65967 > select add #2.151
    65968 
    65969 4 models selected 
    65970 
    65971 > select add #2.160
    65972 
    65973 5 models selected 
    65974 
    65975 > select add #2.165
    65976 
    65977 6 models selected 
    65978 
    65979 > select add #2.198
    65980 
    65981 7 models selected 
    65982 
    65983 > select add #2.200
    65984 
    65985 8 models selected 
    65986 
    65987 > select add #2.78
    65988 
    65989 9 models selected 
    65990 
    65991 > select add #2.77
    65992 
    65993 10 models selected 
    65994 
    65995 > select add #2.84
    65996 
    65997 11 models selected 
    65998 
    65999 > select add #2.143
    66000 
    66001 12 models selected 
    66002 
    66003 > select add #2.158
    66004 
    66005 13 models selected 
    66006 
    66007 > select add #2.146
    66008 
    66009 14 models selected 
    66010 
    66011 > select add #2.190
    66012 
    66013 15 models selected 
    66014 
    66015 > select add #2.68
    66016 
    66017 16 models selected 
    66018 
    66019 > select add #2.178
    66020 
    66021 17 models selected 
    66022 Grouped 17 regions 
    66023 
    66024 > select add #2.113
    66025 
    66026 2 models selected 
    66027 
    66028 > select add #2.116
    66029 
    66030 3 models selected 
    66031 
    66032 > select add #2.105
    66033 
    66034 4 models selected 
    66035 
    66036 > select add #2.115
    66037 
    66038 5 models selected 
    66039 
    66040 > select add #2.138
    66041 
    66042 6 models selected 
    66043 
    66044 > select add #2.135
    66045 
    66046 7 models selected 
    66047 
    66048 > select add #2.136
    66049 
    66050 8 models selected 
    66051 
    66052 > select add #2.134
    66053 
    66054 9 models selected 
    66055 
    66056 > select add #2.139
    66057 
    66058 10 models selected 
    66059 
    66060 > select add #2.133
    66061 
    66062 11 models selected 
    66063 
    66064 > select add #2.137
    66065 
    66066 12 models selected 
    66067 
    66068 > select add #2.117
    66069 
    66070 13 models selected 
    66071 Grouped 13 regions 
    66072 Opened
    66073 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66074 as #36, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66075 
    66076 The cached device pixel ratio value was stale on window expose. Please file a
    66077 QTBUG which explains how to reproduce. 
    66078 
    66079 > save /Users/shoichitachiyama/Desktop/tmp/E-ring.mrc models #36
    66080 
    66081 Opened
    66082 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66083 as #37, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66084 Segmenting
    66085 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    66086 density threshold 0.010668 
    66087 Showing 128 region surfaces 
    66088 1745 watershed regions, grouped to 128 regions 
    66089 Showing
    66090 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    66091 - 128 regions, 128 surfaces 
    66092 
    66093 > hide #!36 models
    66094 
    66095 > hide #!37 models
    66096 
    66097 > show #!32 models
    66098 
    66099 > show #!25 models
    66100 
    66101 > hide #!25 models
    66102 
    66103 > select #2.73
    66104 
    66105 1 model selected 
    66106 
    66107 > select add #2.47
    66108 
    66109 2 models selected 
    66110 Ungrouped to 5 regions 
    66111 Ungrouped to 6 regions 
    66112 Ungrouped to 0 regions 
    66113 
    66114 > select #2.133
    66115 
    66116 1 model selected 
    66117 
    66118 > select add #2.73
    66119 
    66120 2 models selected 
    66121 Grouped 2 regions 
    66122 
    66123 > show #!24 models
    66124 
    66125 > hide #!24 models
    66126 
    66127 > show #!25 models
    66128 
    66129 > select #2.61
    66130 
    66131 1 model selected 
    66132 
    66133 > select #2.124
    66134 
    66135 1 model selected 
    66136 
    66137 > select #2.47
    66138 
    66139 1 model selected 
    66140 Ungrouped to 0 regions 
    66141 
    66142 > select #2.73
    66143 
    66144 1 model selected 
    66145 
    66146 > select add #2.47
    66147 
    66148 2 models selected 
    66149 
    66150 > select add #2.124
    66151 
    66152 3 models selected 
    66153 
    66154 > select add #2.135
    66155 
    66156 4 models selected 
    66157 
    66158 > select add #2.129
    66159 
    66160 5 models selected 
    66161 
    66162 > select add #2.96
    66163 
    66164 6 models selected 
    66165 
    66166 > select add #2.134
    66167 
    66168 7 models selected 
    66169 
    66170 > select #2.39
    66171 
    66172 1 model selected 
    66173 Ungrouped to 3 regions 
    66174 Ungrouped to 5 regions 
    66175 Ungrouped to 8 regions 
    66176 Ungrouped to 5 regions 
    66177 
    66178 > select #2.140
    66179 
    66180 1 model selected 
    66181 Showing 147 region surfaces 
    66182 
    66183 > select add #2.47
    66184 
    66185 2 models selected 
    66186 
    66187 > select add #2.73
    66188 
    66189 3 models selected 
    66190 
    66191 > select add #2.124
    66192 
    66193 4 models selected 
    66194 
    66195 > select add #2.135
    66196 
    66197 5 models selected 
    66198 
    66199 > select add #2.129
    66200 
    66201 6 models selected 
    66202 
    66203 > select add #2.134
    66204 
    66205 7 models selected 
    66206 
    66207 > select add #2.96
    66208 
    66209 8 models selected 
    66210 
    66211 > hide #!25 models
    66212 
    66213 Opened
    66214 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66215 as #38, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66216 
    66217 The cached device pixel ratio value was stale on window expose. Please file a
    66218 QTBUG which explains how to reproduce. 
    66219 
    66220 > save /Users/shoichitachiyama/Desktop/tmp/1unit_PflAB_FliL.mrc models #38
    66221 
    66222 > select clear
    66223 
    66224 > select #2.73
    66225 
    66226 1 model selected 
    66227 
    66228 > select add #2.140
    66229 
    66230 2 models selected 
    66231 
    66232 > select add #2.47
    66233 
    66234 3 models selected 
    66235 Opened
    66236 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66237 as #39, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66238 
    66239 The cached device pixel ratio value was stale on window expose. Please file a
    66240 QTBUG which explains how to reproduce. 
    66241 
    66242 > save /Users/shoichitachiyama/Desktop/tmp/FliL_out.mrc models #39
    66243 
    66244 > select #2.47
    66245 
    66246 1 model selected 
    66247 
    66248 > select add #2.124
    66249 
    66250 2 models selected 
    66251 
    66252 > select add #2.135
    66253 
    66254 3 models selected 
    66255 
    66256 > select add #2.134
    66257 
    66258 4 models selected 
    66259 
    66260 > select add #2.61
    66261 
    66262 5 models selected 
    66263 
    66264 > select subtract #2.61
    66265 
    66266 4 models selected 
    66267 
    66268 > select add #2.61
    66269 
    66270 5 models selected 
    66271 
    66272 > select subtract #2.61
    66273 
    66274 4 models selected 
    66275 
    66276 > select clear
    66277 
    66278 > select #2.61
    66279 
    66280 1 model selected 
    66281 
    66282 > select clear
    66283 
    66284 > select #2.124
    66285 
    66286 1 model selected 
    66287 
    66288 > select add #2.47
    66289 
    66290 2 models selected 
    66291 
    66292 > select add #2.135
    66293 
    66294 3 models selected 
    66295 
    66296 > select add #2.129
    66297 
    66298 4 models selected 
    66299 
    66300 > select add #2.73
    66301 
    66302 5 models selected 
    66303 
    66304 > select add #2.96
    66305 
    66306 6 models selected 
    66307 
    66308 > select add #2.134
    66309 
    66310 7 models selected 
    66311 
    66312 > select add #2.61
    66313 
    66314 8 models selected 
    66315 
    66316 > select clear
    66317 
    66318 > select #2.61
    66319 
    66320 1 model selected 
    66321 Ungrouped to 2 regions 
    66322 
    66323 > select #2.134
    66324 
    66325 1 model selected 
    66326 
    66327 > select add #2.124
    66328 
    66329 2 models selected 
    66330 
    66331 > select add #2.135
    66332 
    66333 3 models selected 
    66334 
    66335 > select add #2.47
    66336 
    66337 4 models selected 
    66338 Opened
    66339 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66340 as #40, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66341 
    66342 The cached device pixel ratio value was stale on window expose. Please file a
    66343 QTBUG which explains how to reproduce. 
    66344 
    66345 > save /Users/shoichitachiyama/Desktop/tmp/1unit_rim.mrc models #40
    66346 
    66347 > select #2.129
    66348 
    66349 1 model selected 
    66350 
    66351 > select add #2.96
    66352 
    66353 2 models selected 
    66354 Opened
    66355 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66356 as #41, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66357 
    66358 The cached device pixel ratio value was stale on window expose. Please file a
    66359 QTBUG which explains how to reproduce. 
    66360 
    66361 > save /Users/shoichitachiyama/Desktop/tmp/1unit_PflA.mrc models #41
    66362 
    66363 > select clear
    66364 
    66365 > select #2.73
    66366 
    66367 1 model selected 
    66368 
    66369 > select add #2.120
    66370 
    66371 2 models selected 
    66372 
    66373 > select add #2.47
    66374 
    66375 3 models selected 
    66376 
    66377 > select add #2.129
    66378 
    66379 4 models selected 
    66380 
    66381 > select add #2.135
    66382 
    66383 5 models selected 
    66384 
    66385 > select add #2.96
    66386 
    66387 6 models selected 
    66388 
    66389 > select add #2.134
    66390 
    66391 7 models selected 
    66392 
    66393 > select add #2.124
    66394 
    66395 8 models selected 
    66396 
    66397 > select add #2.92
    66398 
    66399 9 models selected 
    66400 
    66401 > select add #2.105
    66402 
    66403 10 models selected 
    66404 
    66405 > select add #2.115
    66406 
    66407 11 models selected 
    66408 
    66409 > select add #2.62
    66410 
    66411 12 models selected 
    66412 
    66413 > select add #2.99
    66414 
    66415 13 models selected 
    66416 
    66417 > select add #2.86
    66418 
    66419 14 models selected 
    66420 
    66421 > select add #2.79
    66422 
    66423 15 models selected 
    66424 
    66425 > select add #2.88
    66426 
    66427 16 models selected 
    66428 
    66429 > select add #2.87
    66430 
    66431 17 models selected 
    66432 
    66433 > select add #2.78
    66434 
    66435 18 models selected 
    66436 
    66437 > select add #2.103
    66438 
    66439 19 models selected 
    66440 
    66441 > select add #2.126
    66442 
    66443 20 models selected 
    66444 
    66445 > select add #2.60
    66446 
    66447 21 models selected 
    66448 
    66449 > select add #2.114
    66450 
    66451 22 models selected 
    66452 
    66453 > select add #2.49
    66454 
    66455 23 models selected 
    66456 
    66457 > select add #2.89
    66458 
    66459 24 models selected 
    66460 
    66461 > select add #2.85
    66462 
    66463 25 models selected 
    66464 
    66465 > select add #2.127
    66466 
    66467 26 models selected 
    66468 
    66469 > select add #2.95
    66470 
    66471 27 models selected 
    66472 
    66473 > select add #2.116
    66474 
    66475 28 models selected 
    66476 
    66477 > select add #2.91
    66478 
    66479 29 models selected 
    66480 
    66481 > select add #2.94
    66482 
    66483 30 models selected 
    66484 
    66485 > select add #2.56
    66486 
    66487 31 models selected 
    66488 
    66489 > select add #2.104
    66490 
    66491 32 models selected 
    66492 
    66493 > select add #2.121
    66494 
    66495 33 models selected 
    66496 
    66497 > select add #2.122
    66498 
    66499 34 models selected 
    66500 
    66501 > select add #2.52
    66502 
    66503 35 models selected 
    66504 
    66505 > select add #2.101
    66506 
    66507 36 models selected 
    66508 
    66509 > select add #2.113
    66510 
    66511 37 models selected 
    66512 
    66513 > select add #2.54
    66514 
    66515 38 models selected 
    66516 
    66517 > select add #2.97
    66518 
    66519 39 models selected 
    66520 
    66521 > select add #2.117
    66522 
    66523 40 models selected 
    66524 
    66525 > select add #2.53
    66526 
    66527 41 models selected 
    66528 
    66529 > select add #2.108
    66530 
    66531 42 models selected 
    66532 
    66533 > select add #2.118
    66534 
    66535 43 models selected 
    66536 
    66537 > select add #2.45
    66538 
    66539 44 models selected 
    66540 
    66541 > select add #2.106
    66542 
    66543 45 models selected 
    66544 
    66545 > select add #2.123
    66546 
    66547 46 models selected 
    66548 
    66549 > select add #2.44
    66550 
    66551 47 models selected 
    66552 
    66553 > select add #2.98
    66554 
    66555 48 models selected 
    66556 
    66557 > select add #2.119
    66558 
    66559 49 models selected 
    66560 
    66561 > select add #2.51
    66562 
    66563 50 models selected 
    66564 
    66565 > select add #2.90
    66566 
    66567 51 models selected 
    66568 
    66569 > select add #2.125
    66570 
    66571 52 models selected 
    66572 
    66573 > select add #2.48
    66574 
    66575 53 models selected 
    66576 
    66577 > select add #2.102
    66578 
    66579 54 models selected 
    66580 
    66581 > hide #!32 models
    66582 
    66583 > hide #!38 models
    66584 
    66585 > hide #!39 models
    66586 
    66587 > hide #!40 models
    66588 
    66589 > select add #2.93
    66590 
    66591 55 models selected 
    66592 Grouped 55 regions 
    66593 
    66594 > select #2.141
    66595 
    66596 1 model selected 
    66597 Grouped 1 regions 
    66598 Showing 94 region surfaces 
    66599 
    66600 > select subtract #2.45
    66601 
    66602 Nothing selected 
    66603 
    66604 The cached device pixel ratio value was stale on window expose. Please file a
    66605 QTBUG which explains how to reproduce. 
    66606 
    66607 > select #2.45
    66608 
    66609 1 model selected 
    66610 
    66611 > select add #2.44
    66612 
    66613 2 models selected 
    66614 Grouped 2 regions 
    66615 
    66616 > select #2.44
    66617 
    66618 1 model selected 
    66619 
    66620 > select #2.58
    66621 
    66622 1 model selected 
    66623 Ungrouped to 3 regions 
    66624 
    66625 > select #2.47
    66626 
    66627 1 model selected 
    66628 
    66629 > select add #2.45
    66630 
    66631 2 models selected 
    66632 
    66633 > select add #2.44
    66634 
    66635 3 models selected 
    66636 Grouped 3 regions 
    66637 
    66638 > select #2.43
    66639 
    66640 1 model selected 
    66641 Ungrouped to 3 regions 
    66642 
    66643 > select #2.47
    66644 
    66645 1 model selected 
    66646 
    66647 > select add #2.44
    66648 
    66649 2 models selected 
    66650 Grouped 2 regions 
    66651 
    66652 > select #2.66
    66653 
    66654 1 model selected 
    66655 Ungrouped to 3 regions 
    66656 
    66657 > select #2.44
    66658 
    66659 1 model selected 
    66660 
    66661 > select add #2.47
    66662 
    66663 2 models selected 
    66664 
    66665 > select add #2.43
    66666 
    66667 3 models selected 
    66668 Grouped 3 regions 
    66669 
    66670 > select #2.67
    66671 
    66672 1 model selected 
    66673 Ungrouped to 3 regions 
    66674 
    66675 > select #2.44
    66676 
    66677 1 model selected 
    66678 
    66679 > select add #2.43
    66680 
    66681 2 models selected 
    66682 Grouped 2 regions 
    66683 
    66684 > select add #2.59
    66685 
    66686 2 models selected 
    66687 
    66688 > select #2.59
    66689 
    66690 1 model selected 
    66691 Ungrouped to 3 regions 
    66692 
    66693 > select #2.53
    66694 
    66695 1 model selected 
    66696 
    66697 > select add #2.44
    66698 
    66699 2 models selected 
    66700 
    66701 > select add #2.43
    66702 
    66703 3 models selected 
    66704 Grouped 3 regions 
    66705 
    66706 > select #2.64
    66707 
    66708 1 model selected 
    66709 
    66710 > select add #2.46
    66711 
    66712 2 models selected 
    66713 Ungrouped to 7 regions 
    66714 
    66715 > select #2.61
    66716 
    66717 1 model selected 
    66718 
    66719 > select add #2.53
    66720 
    66721 2 models selected 
    66722 
    66723 > select add #2.58
    66724 
    66725 3 models selected 
    66726 
    66727 > select add #2.43
    66728 
    66729 4 models selected 
    66730 Grouped 4 regions 
    66731 
    66732 > select #2.55
    66733 
    66734 1 model selected 
    66735 Ungrouped to 3 regions 
    66736 
    66737 > select #2.53
    66738 
    66739 1 model selected 
    66740 
    66741 > select add #2.46
    66742 
    66743 2 models selected 
    66744 
    66745 > select add #2.43
    66746 
    66747 3 models selected 
    66748 Grouped 3 regions 
    66749 
    66750 > select #2.57
    66751 
    66752 1 model selected 
    66753 Ungrouped to 3 regions 
    66754 Ungrouped to 2 regions 
    66755 
    66756 > select #2.53
    66757 
    66758 1 model selected 
    66759 
    66760 > select add #2.46
    66761 
    66762 2 models selected 
    66763 
    66764 > select add #2.43
    66765 
    66766 3 models selected 
    66767 Grouped 3 regions 
    66768 
    66769 > select #2.63
    66770 
    66771 1 model selected 
    66772 Ungrouped to 3 regions 
    66773 Ungrouped to 0 regions 
    66774 
    66775 > select #2.55
    66776 
    66777 1 model selected 
    66778 
    66779 > select add #2.43
    66780 
    66781 2 models selected 
    66782 Grouped 2 regions 
    66783 
    66784 > select #2.69
    66785 
    66786 1 model selected 
    66787 Ungrouped to 2 regions 
    66788 
    66789 > select #2.62
    66790 
    66791 1 model selected 
    66792 
    66793 > select add #2.43
    66794 
    66795 2 models selected 
    66796 Grouped 2 regions 
    66797 
    66798 > select #2.68
    66799 
    66800 1 model selected 
    66801 Ungrouped to 2 regions 
    66802 
    66803 > select #2.63
    66804 
    66805 1 model selected 
    66806 
    66807 > select add #2.43
    66808 
    66809 2 models selected 
    66810 Grouped 2 regions 
    66811 
    66812 > select #2.50
    66813 
    66814 1 model selected 
    66815 Ungrouped to 3 regions 
    66816 Ungrouped to 2 regions 
    66817 
    66818 > select #2.66
    66819 
    66820 1 model selected 
    66821 
    66822 > select add #2.63
    66823 
    66824 2 models selected 
    66825 
    66826 > select add #2.43
    66827 
    66828 3 models selected 
    66829 Grouped 3 regions 
    66830 
    66831 > select #2.72
    66832 
    66833 1 model selected 
    66834 Ungrouped to 2 regions 
    66835 [Repeated 1 time(s)]
    66836 
    66837 > select #2.64
    66838 
    66839 1 model selected 
    66840 
    66841 > select add #2.43
    66842 
    66843 2 models selected 
    66844 Grouped 2 regions 
    66845 
    66846 > select add #2.30
    66847 
    66848 2 models selected 
    66849 
    66850 > select #2.43
    66851 
    66852 1 model selected 
    66853 
    66854 > select #2.65
    66855 
    66856 1 model selected 
    66857 Ungrouped to 3 regions 
    66858 Ungrouped to 2 regions 
    66859 
    66860 > select #2.69
    66861 
    66862 1 model selected 
    66863 
    66864 > select add #2.63
    66865 
    66866 2 models selected 
    66867 
    66868 > select add #2.43
    66869 
    66870 3 models selected 
    66871 Grouped 3 regions 
    66872 Opened
    66873 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66874 as #42, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66875 
    66876 The cached device pixel ratio value was stale on window expose. Please file a
    66877 QTBUG which explains how to reproduce. 
    66878 
    66879 > save /Users/shoichitachiyama/Desktop/tmp/C17_proximal-disk.mrc models #42
    66880 
    66881 Opened
    66882 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    66883 as #43, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    66884 Segmenting
    66885 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked,
    66886 density threshold 0.010668 
    66887 Showing 76 region surfaces 
    66888 1581 watershed regions, grouped to 76 regions 
    66889 Showing
    66890 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked.seg
    66891 - 76 regions, 76 surfaces 
    66892 
    66893 > hide #!41 models
    66894 
    66895 > hide #!42 models
    66896 
    66897 > hide #!43 models
    66898 
    66899 > select #2.28
    66900 
    66901 1 model selected 
    66902 
    66903 > select add #2.26
    66904 
    66905 2 models selected 
    66906 
    66907 > select add #2.35
    66908 
    66909 3 models selected 
    66910 
    66911 > select add #2.32
    66912 
    66913 4 models selected 
    66914 
    66915 > select add #2.36
    66916 
    66917 5 models selected 
    66918 
    66919 > select add #2.37
    66920 
    66921 6 models selected 
    66922 
    66923 > select add #2.19
    66924 
    66925 7 models selected 
    66926 
    66927 > select add #2.38
    66928 
    66929 8 models selected 
    66930 
    66931 > select subtract #2.19
    66932 
    66933 7 models selected 
    66934 
    66935 > select subtract #2.38
    66936 
    66937 6 models selected 
    66938 
    66939 > select add #2.19
    66940 
    66941 7 models selected 
    66942 
    66943 > select add #2.29
    66944 
    66945 8 models selected 
    66946 
    66947 > select add #2.40
    66948 
    66949 9 models selected 
    66950 Grouped 9 regions 
    66951 
    66952 > select add #2.38
    66953 
    66954 2 models selected 
    66955 
    66956 > select add #2.42
    66957 
    66958 3 models selected 
    66959 
    66960 > select add #2.31
    66961 
    66962 4 models selected 
    66963 
    66964 > select add #2.27
    66965 
    66966 5 models selected 
    66967 
    66968 > select add #2.41
    66969 
    66970 6 models selected 
    66971 
    66972 > select add #2.30
    66973 
    66974 7 models selected 
    66975 
    66976 > select add #2.39
    66977 
    66978 8 models selected 
    66979 
    66980 > select add #2.34
    66981 
    66982 9 models selected 
    66983 Grouped 9 regions 
    66984 Drag select of 2173, 1966, 6813 of 7104 triangles, 1965, 1976, 1947, 6356 of
    66985 6868 triangles, 1924, 1938, 3854 of 6956 triangles, 2065, 3596 of 6388
    66986 triangles, 1837, 5873 of 6204 triangles, 1672, 2076, 6011 of 6220 triangles,
    66987 2098, 4727 of 5832 triangles, 1610, 3955 of 5396 triangles, 1831, 5195 of 5548
    66988 triangles, 2052, 5648 of 5704 triangles, 1933, 5575 of 5660 triangles, 1985,
    66989 1687, 5481 of 5484 triangles 
    66990 Grouped 19 regions 
    66991 
    66992 > select add #2.61
    66993 
    66994 2 models selected 
    66995 
    66996 > select add #2.65
    66997 
    66998 3 models selected 
    66999 
    67000 > select add #2.46
    67001 
    67002 4 models selected 
    67003 
    67004 > select add #2.70
    67005 
    67006 5 models selected 
    67007 
    67008 > select add #2.68
    67009 
    67010 6 models selected 
    67011 
    67012 > select add #2.51
    67013 
    67014 7 models selected 
    67015 
    67016 > select add #2.64
    67017 
    67018 8 models selected 
    67019 
    67020 > select add #2.43
    67021 
    67022 9 models selected 
    67023 
    67024 > select add #2.67
    67025 
    67026 10 models selected 
    67027 
    67028 > select add #2.60
    67029 
    67030 11 models selected 
    67031 
    67032 > select add #2.66
    67033 
    67034 12 models selected 
    67035 
    67036 > select add #2.56
    67037 
    67038 13 models selected 
    67039 
    67040 > select add #2.59
    67041 
    67042 14 models selected 
    67043 
    67044 > select add #2.58
    67045 
    67046 15 models selected 
    67047 
    67048 > select add #2.62
    67049 
    67050 16 models selected 
    67051 
    67052 > select add #2.63
    67053 
    67054 17 models selected 
    67055 Grouped 17 regions 
    67056 
    67057 > select #2.17
    67058 
    67059 1 model selected 
    67060 
    67061 > select add #2.20
    67062 
    67063 2 models selected 
    67064 
    67065 > select add #2.14
    67066 
    67067 3 models selected 
    67068 
    67069 > select add #2.33
    67070 
    67071 4 models selected 
    67072 
    67073 > select add #2.15
    67074 
    67075 5 models selected 
    67076 
    67077 > select add #2.24
    67078 
    67079 6 models selected 
    67080 
    67081 > select add #2.5
    67082 
    67083 7 models selected 
    67084 
    67085 > select add #2.12
    67086 
    67087 8 models selected 
    67088 
    67089 > select add #2.22
    67090 
    67091 9 models selected 
    67092 
    67093 > select add #2.6
    67094 
    67095 10 models selected 
    67096 
    67097 > select add #2.16
    67098 
    67099 11 models selected 
    67100 
    67101 > select add #2.21
    67102 
    67103 12 models selected 
    67104 
    67105 > select add #2.10
    67106 
    67107 13 models selected 
    67108 
    67109 > select add #2.8
    67110 
    67111 14 models selected 
    67112 
    67113 > select add #2.4
    67114 
    67115 15 models selected 
    67116 
    67117 > select add #2.9
    67118 
    67119 16 models selected 
    67120 
    67121 > select add #2.3
    67122 
    67123 17 models selected 
    67124 
    67125 > select add #2.2
    67126 
    67127 18 models selected 
    67128 
    67129 > select add #2.18
    67130 
    67131 19 models selected 
    67132 
    67133 > select add #2.11
    67134 
    67135 20 models selected 
    67136 
    67137 > select add #2.25
    67138 
    67139 21 models selected 
    67140 
    67141 > select add #2.13
    67142 
    67143 22 models selected 
    67144 
    67145 > select add #2.23
    67146 
    67147 23 models selected 
    67148 
    67149 > select add #2.7
    67150 
    67151 24 models selected 
    67152 
    67153 > select subtract #2.7
    67154 
    67155 23 models selected 
    67156 
    67157 > select add #2.7
    67158 
    67159 24 models selected 
    67160 Ungrouped to 79 regions 
    67161 
    67162 > select subtract #2.19
    67163 
    67164 78 models selected 
    67165 
    67166 > select subtract #2.87
    67167 
    67168 77 models selected 
    67169 
    67170 > select subtract #2.54
    67171 
    67172 76 models selected 
    67173 
    67174 > select subtract #2.45
    67175 
    67176 75 models selected 
    67177 
    67178 > select subtract #2.28
    67179 
    67180 74 models selected 
    67181 
    67182 > select add #2.28
    67183 
    67184 75 models selected 
    67185 
    67186 > select subtract #2.104
    67187 
    67188 74 models selected 
    67189 
    67190 > select subtract #2.81
    67191 
    67192 73 models selected 
    67193 
    67194 > select subtract #2.95
    67195 
    67196 72 models selected 
    67197 
    67198 > select subtract #2.47
    67199 
    67200 71 models selected 
    67201 Ungrouped to 268 regions 
    67202 Ungrouped to 643 regions 
    67203 Ungrouped to 499 regions 
    67204 Ungrouped to 0 regions 
    67205 Ungrouped to 4 regions 
    67206 Ungrouped to 36 regions 
    67207 Drag select of 10, 40, 134, 112 of 236 triangles, 19, 13, 119, 94 of 168
    67208 triangles, 97, 205 of 716 triangles, 1, 27, 88, 390 of 696 triangles, 107, 116
    67209 of 392 triangles, 20, 1064 of 1684 triangles, 145, 38 of 604 triangles, 141,
    67210 119 of 1296 triangles, 38, 192 of 468 triangles, 25, 156 of 160 triangles, 80,
    67211 354 of 440 triangles, 17, 50, 116 of 600 triangles, 51, 15 of 1608 triangles,
    67212 64, 478 of 664 triangles, 142, 125 of 228 triangles, 46, 379 of 452 triangles,
    67213 21, 47, 583 of 1332 triangles, 81, 374 of 420 triangles, 122, 226 of 668
    67214 triangles, 26, 1010 of 1480 triangles, 140, 75 of 364 triangles, 174, 13 of
    67215 316 triangles, 68, 178 of 180 triangles, 7, 8, 36, 615 of 1248 triangles, 37,
    67216 494 of 592 triangles, 120, 205 of 4436 triangles, 84, 14, 60, 42 of 428
    67217 triangles, 91, 89 of 276 triangles, 3, 5, 41, 679 of 864 triangles, 15, 9, 31,
    67218 65 of 516 triangles, 100, 537 of 1176 triangles, 63, 841 of 868 triangles, 24,
    67219 65, 898 of 1640 triangles, 61, 123, 199 of 244 triangles, 110, 8 of 80
    67220 triangles, 39, 448 of 1524 triangles, 170, 78 of 724 triangles, 86, 429 of 500
    67221 triangles, 101, 321 of 664 triangles, 143, 87 of 96 triangles, 106, 200 of 636
    67222 triangles, 2, 151 of 552 triangles, 49, 128 of 836 triangles, 109, 37 of 596
    67223 triangles, 96, 89 of 420 triangles, 79, 199 of 376 triangles, 18, 127, 28 of
    67224 756 triangles, 172, 45 of 400 triangles, 103, 405 of 844 triangles, 137, 25 of
    67225 588 triangles, 85, 461 of 492 triangles, 126, 308 of 600 triangles, 166, 15 of
    67226 268 triangles 
    67227 Drag select of 35, 299 of 504 triangles, 12, 77, 132 of 192 triangles, 16,
    67228 124, 72 of 696 triangles, 44, 375 of 564 triangles, 125, 10 of 1424 triangles,
    67229 271, 46 of 1112 triangles, 214, 210 of 1024 triangles, 153, 315 of 1276
    67230 triangles, 30, 18 of 136 triangles, 11, 257 of 588 triangles, 274, 173 of 2996
    67231 triangles, 83, 246 of 364 triangles, 98, 137 of 160 triangles, 193, 624 of 904
    67232 triangles, 360, 25 of 1840 triangles, 147, 23, 305 of 332 triangles, 32, 79 of
    67233 532 triangles, 4, 433 of 596 triangles, 173, 662 of 1272 triangles, 28, 791 of
    67234 2164 triangles, 182, 26 of 1932 triangles, 43, 400 of 468 triangles, 131, 140
    67235 of 420 triangles, 22, 282 of 976 triangles, 55, 102 of 1208 triangles, 162,
    67236 486 of 1088 triangles, 237, 351 of 2300 triangles, 176, 367 of 480 triangles,
    67237 201, 402 of 648 triangles, 138, 22 of 56 triangles, 111, 578 of 680 triangles,
    67238 191, 631 of 1104 triangles, 240, 363 of 5172 triangles, 161, 141 of 948
    67239 triangles, 92, 409 of 448 triangles, 154, 132 of 200 triangles, 62, 691 of
    67240 1468 triangles, 42, 429 of 488 triangles, 54, 21 of 344 triangles, 158, 279,
    67241 136 of 1276 triangles, 95, 73 of 80 triangles, 74, 575 of 1396 triangles, 242,
    67242 471 of 1304 triangles, 33, 56, 287 of 436 triangles, 179, 358 of 660
    67243 triangles, 209, 208, 259 of 724 triangles, 149, 297 of 2028 triangles, 116, 45
    67244 of 464 triangles, 82, 379 of 380 triangles, 163, 93 of 392 triangles, 121, 259
    67245 of 524 triangles, 66, 44 of 1092 triangles, 29, 296 of 724 triangles, 202, 434
    67246 of 1632 triangles, 205, 398 of 1648 triangles, 177, 321, 161 of 460 triangles,
    67247 318, 276 of 2068 triangles, 278, 214 of 2840 triangles, 244, 441 of 824
    67248 triangles, 160, 210 of 680 triangles, 159, 230 of 644 triangles, 34, 208 of
    67249 584 triangles, 57, 150 of 1144 triangles, 78, 5 of 216 triangles, 52, 708 of
    67250 1080 triangles, 235, 145 of 3672 triangles, 270, 12 of 300 triangles, 99, 304
    67251 of 692 triangles, 45, 183 of 404 triangles, 364, 9 of 1588 triangles, 59, 288
    67252 of 972 triangles, 58, 466 of 1252 triangles, 212, 254 of 2236 triangles, 150,
    67253 221 of 364 triangles, 250, 142 of 624 triangles, 290, 138 of 3772 triangles,
    67254 291, 10 of 976 triangles, 322, 62 of 856 triangles, 280, 213 of 3872
    67255 triangles, 136, 441 of 2104 triangles, 239, 262 of 1672 triangles, 282, 359 of
    67256 1168 triangles, 283, 136 of 3160 triangles, 135, 421 of 1468 triangles, 313,
    67257 220 of 840 triangles, 6, 392 of 480 triangles, 315, 15 of 1128 triangles, 241,
    67258 135 of 188 triangles, 249, 190 of 416 triangles, 253, 5 of 532 triangles, 216,
    67259 13 of 4072 triangles, 139, 242 of 572 triangles, 200, 435 of 708 triangles,
    67260 284, 212 of 1680 triangles, 164, 102 of 576 triangles, 189, 360 of 820
    67261 triangles, 180, 134 of 1468 triangles, 256, 6 of 1368 triangles, 326, 29 of
    67262 1048 triangles, 325, 78 of 4324 triangles, 195, 446 of 728 triangles, 243, 371
    67263 of 1716 triangles, 192, 428 of 2648 triangles, 197, 488 of 1564 triangles,
    67264 281, 227 of 696 triangles 
    67265 Drag select of 2195, 694 of 309624 triangles, 76, 52 of 56 triangles, 48, 180
    67266 of 496 triangles, 351, 145 of 4372 triangles, 411, 221 of 504 triangles, 190,
    67267 197 of 1036 triangles, 72, 25 of 236 triangles, 269, 86 of 952 triangles, 102,
    67268 28 of 80 triangles, 219, 493 of 920 triangles, 71, 104 of 1228 triangles, 73,
    67269 129 of 732 triangles, 353, 93, 25 of 56 triangles, 502, 91 of 864 triangles,
    67270 358, 612 of 3084 triangles, 378, 405 of 2868 triangles, 70, 133 of 1388
    67271 triangles, 327, 642 of 7304 triangles, 53, 122 of 184 triangles, 94, 246 of
    67272 1024 triangles, 117, 51 of 56 triangles, 157, 10 of 988 triangles, 511, 149 of
    67273 3000 triangles, 468, 305 of 496 triangles, 186, 71 of 748 triangles, 133, 180
    67274 of 508 triangles, 508, 111 of 2712 triangles, 155, 323 of 380 triangles, 420,
    67275 1006 of 3276 triangles, 390, 371 of 2724 triangles, 331, 480, 127 of 644
    67276 triangles, 183, 403 of 596 triangles, 221, 258 of 772 triangles, 156, 102 of
    67277 612 triangles, 227, 113 of 768 triangles, 224, 78 of 880 triangles, 231, 6 of
    67278 148 triangles, 69, 191 of 1220 triangles, 366, 356 of 1076 triangles, 436, 692
    67279 of 4728 triangles, 467, 533 of 1448 triangles, 104, 55 of 580 triangles, 296,
    67280 493 of 2656 triangles, 447, 41 of 1084 triangles, 341, 23 of 3192 triangles,
    67281 165, 232 of 704 triangles, 234, 157 of 596 triangles, 232, 282 of 1584
    67282 triangles, 473, 386 of 1084 triangles, 342, 75 of 512 triangles, 333, 512, 93
    67283 of 2128 triangles, 328, 408 of 1296 triangles, 506, 38 of 5116 triangles, 226,
    67284 66 of 468 triangles, 354, 25 of 6592 triangles, 308, 159 of 3916 triangles,
    67285 223, 222 of 1136 triangles, 419, 611 of 4292 triangles, 339, 119 of 304
    67286 triangles, 336, 143 of 1552 triangles, 418, 295 of 484 triangles, 75, 66 of 80
    67287 triangles, 509, 165 of 2632 triangles, 340, 41 of 1900 triangles, 259, 275 of
    67288 664 triangles, 255, 337, 176 of 464 triangles, 87, 4 of 188 triangles, 67, 132
    67289 of 1124 triangles, 518, 18 of 228 triangles, 225, 85 of 564 triangles, 267,
    67290 406 of 1236 triangles, 236, 265 of 2832 triangles, 384, 210 of 244 triangles,
    67291 437, 479 of 1644 triangles, 393, 398 of 3164 triangles, 510, 174 of 2680
    67292 triangles, 355, 74 of 420 triangles, 356, 61 of 2328 triangles, 412, 9 of 1496
    67293 triangles, 268, 355 of 1268 triangles, 300, 119 of 1184 triangles, 471, 227 of
    67294 2528 triangles, 181, 254 of 292 triangles, 218, 418 of 876 triangles, 167, 59
    67295 of 1088 triangles, 472, 475 of 1152 triangles, 423, 622 of 2468 triangles,
    67296 263, 76 of 2164 triangles, 272, 363 of 1320 triangles, 332, 227 of 4892
    67297 triangles 
    67298 
    67299 > select subtract #2.1
    67300 
    67301 277 models selected 
    67302 
    67303 > select add #2.924
    67304 
    67305 278 models selected 
    67306 
    67307 > select add #2.744
    67308 
    67309 279 models selected 
    67310 
    67311 > select add #2.490
    67312 
    67313 280 models selected 
    67314 
    67315 > select add #2.729
    67316 
    67317 281 models selected 
    67318 
    67319 > select add #2.149
    67320 
    67321 282 models selected 
    67322 
    67323 > select add #2.732
    67324 
    67325 283 models selected 
    67326 
    67327 > select add #2.462
    67328 
    67329 284 models selected 
    67330 
    67331 > select add #2.1152
    67332 
    67333 285 models selected 
    67334 
    67335 > select add #2.1301
    67336 
    67337 286 models selected 
    67338 
    67339 > select add #2.371
    67340 
    67341 287 models selected 
    67342 
    67343 > select add #2.370
    67344 
    67345 288 models selected 
    67346 
    67347 > select add #2.931
    67348 
    67349 289 models selected 
    67350 
    67351 > select add #2.880
    67352 
    67353 290 models selected 
    67354 
    67355 > select add #2.663
    67356 
    67357 291 models selected 
    67358 Grouped 291 regions 
    67359 Drag select of 1581, 1558, 150 of 380 triangles, 1559, 230 of 308 triangles,
    67360 1578, 1575, 1572, 1580, 1570, 1577, 1569, 1571, 1579, 1574, 1568, 1556, 41 of
    67361 348 triangles, 1560, 197 of 228 triangles, 1563, 85 of 144 triangles, 1576,
    67362 1567, 1562, 155 of 168 triangles, 1573, 1561, 244 of 308 triangles, 1565,
    67363 1564, 1566 
    67364 Grouped 26 regions 
    67365 
    67366 > select add #2.83
    67367 
    67368 2 models selected 
    67369 
    67370 > select add #2.561
    67371 
    67372 3 models selected 
    67373 
    67374 > select add #2.1033
    67375 
    67376 4 models selected 
    67377 
    67378 > select add #2.132
    67379 
    67380 5 models selected 
    67381 
    67382 > select add #2.259
    67383 
    67384 6 models selected 
    67385 
    67386 > select add #2.680
    67387 
    67388 7 models selected 
    67389 
    67390 > select add #2.195
    67391 
    67392 8 models selected 
    67393 
    67394 > select add #2.305
    67395 
    67396 9 models selected 
    67397 
    67398 > select add #2.775
    67399 
    67400 10 models selected 
    67401 
    67402 > select add #2.297
    67403 
    67404 11 models selected 
    67405 Grouped 11 regions 
    67406 Opened
    67407 L0_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked_imasked
    67408 as #44, grid size 250,250,250, pixel 4.3, shown at step 1, values float32 
    67409 
    67410 > hide #!2 models
    67411 
    67412 The cached device pixel ratio value was stale on window expose. Please file a
    67413 QTBUG which explains how to reproduce. 
    67414 
    67415 > save /Users/shoichitachiyama/Desktop/tmp/IM.mrc models #44
    67416 
    67417 > save /Users/shoichitachiyama/Desktop/tmp/Segmentation.cxs includeMaps true
    67418 
    67419 > close session
    67420 
    67421 > open /Users/shoichitachiyama/Desktop/tmp/C17_proximal-disk.mrc
    67422 
    67423 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    67424 level 0.0101, step 1, values float32 
    67425 
    67426 > open /Users/shoichitachiyama/Desktop/tmp/1unit_rim.mrc
    67427 
    67428 Opened 1unit_rim.mrc as #2, grid size 250,250,250, pixel 4.3, shown at level
    67429 0.00909, step 1, values float32 
    67430 
    67431 > open /Users/shoichitachiyama/Desktop/tmp/Rod.mrc
    67432 
    67433 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0124,
    67434 step 1, values float32 
    67435 
    67436 > volume #2 level 0.01227
    67437 
    67438 > volume #1 level 0.01376
    67439 
    67440 > volume #3 level 0.01368
    67441 
    67442 > view orient
    67443 
    67444 > turn z 21.17647 models #2 center #3
    67445 
    67446 > volume copy #2
    67447 
    67448 Opened 1unit_rim.mrc copy as #4, grid size 250,250,250, pixel 4.3, shown at
    67449 step 1, values float32 
    67450 
    67451 > volume #2 show
    67452 
    67453 > turn z 21.17647 models #2 center #3
    67454 
    67455 > volume copy #2
    67456 
    67457 Opened 1unit_rim.mrc copy as #5, grid size 250,250,250, pixel 4.3, shown at
    67458 step 1, values float32 
    67459 
    67460 > volume #2 show
    67461 
    67462 > turn z 21.17647 models #2 center #3
    67463 
    67464 > volume copy #2
    67465 
    67466 Opened 1unit_rim.mrc copy as #6, grid size 250,250,250, pixel 4.3, shown at
    67467 step 1, values float32 
    67468 
    67469 > volume #2 show
    67470 
    67471 > turn z 21.17647 models #2 center #3
    67472 
    67473 > volume copy #2
    67474 
    67475 Opened 1unit_rim.mrc copy as #7, grid size 250,250,250, pixel 4.3, shown at
    67476 step 1, values float32 
    67477 
    67478 > volume #2 show
    67479 
    67480 > turn z 21.17647 models #2 center #3
    67481 
    67482 > volume copy #2
    67483 
    67484 Opened 1unit_rim.mrc copy as #8, grid size 250,250,250, pixel 4.3, shown at
    67485 step 1, values float32 
    67486 
    67487 > volume #2 show
    67488 
    67489 > turn z 21.17647 models #2 center #3
    67490 
    67491 > volume copy #2
    67492 
    67493 Opened 1unit_rim.mrc copy as #9, grid size 250,250,250, pixel 4.3, shown at
    67494 step 1, values float32 
    67495 
    67496 > volume #2 show
    67497 
    67498 > turn z 21.17647 models #2 center #3
    67499 
    67500 > volume copy #2
    67501 
    67502 Opened 1unit_rim.mrc copy as #10, grid size 250,250,250, pixel 4.3, shown at
    67503 step 1, values float32 
    67504 
    67505 > volume #2 show
    67506 
    67507 > turn z 21.17647 models #2 center #3
    67508 
    67509 > volume copy #2
    67510 
    67511 Opened 1unit_rim.mrc copy as #11, grid size 250,250,250, pixel 4.3, shown at
    67512 step 1, values float32 
    67513 
    67514 > volume #2 show
    67515 
    67516 > turn z 21.17647 models #2 center #3
    67517 
    67518 > volume copy #2
    67519 
    67520 Opened 1unit_rim.mrc copy as #12, grid size 250,250,250, pixel 4.3, shown at
    67521 step 1, values float32 
    67522 
    67523 > volume #2 show
    67524 
    67525 > turn z 21.17647 models #2 center #3
    67526 
    67527 > volume copy #2
    67528 
    67529 Opened 1unit_rim.mrc copy as #13, grid size 250,250,250, pixel 4.3, shown at
    67530 step 1, values float32 
    67531 
    67532 > volume #2 show
    67533 
    67534 > turn z 21.17647 models #2 center #3
    67535 
    67536 > volume copy #2
    67537 
    67538 Opened 1unit_rim.mrc copy as #14, grid size 250,250,250, pixel 4.3, shown at
    67539 step 1, values float32 
    67540 
    67541 > volume #2 show
    67542 
    67543 > turn z 21.17647 models #2 center #3
    67544 
    67545 > volume copy #2
    67546 
    67547 Opened 1unit_rim.mrc copy as #15, grid size 250,250,250, pixel 4.3, shown at
    67548 step 1, values float32 
    67549 
    67550 > volume #2 show
    67551 
    67552 > turn z 21.17647 models #2 center #3
    67553 
    67554 > volume copy #2
    67555 
    67556 Opened 1unit_rim.mrc copy as #16, grid size 250,250,250, pixel 4.3, shown at
    67557 step 1, values float32 
    67558 
    67559 > volume #2 show
    67560 
    67561 > turn z 21.17647 models #2 center #3
    67562 
    67563 > volume copy #2
    67564 
    67565 Opened 1unit_rim.mrc copy as #17, grid size 250,250,250, pixel 4.3, shown at
    67566 step 1, values float32 
    67567 
    67568 > volume #2 show
    67569 
    67570 > turn z 21.17647 models #2 center #3
    67571 
    67572 > volume copy #2
    67573 
    67574 Opened 1unit_rim.mrc copy as #18, grid size 250,250,250, pixel 4.3, shown at
    67575 step 1, values float32 
    67576 
    67577 > volume #2 show
    67578 
    67579 > turn z 21.17647 models #2 center #3
    67580 
    67581 > volume copy #2
    67582 
    67583 Opened 1unit_rim.mrc copy as #19, grid size 250,250,250, pixel 4.3, shown at
    67584 step 1, values float32 
    67585 
    67586 > volume #2 show
    67587 
    67588 > turn z 21.17647 models #2 center #3
    67589 
    67590 > volume copy #2
    67591 
    67592 Opened 1unit_rim.mrc copy as #20, grid size 250,250,250, pixel 4.3, shown at
    67593 step 1, values float32 
    67594 
    67595 > volume #2 show
    67596 
    67597 > hide #!2 models
    67598 
    67599 > hide #!20 models
    67600 
    67601 > close #4-20
    67602 
    67603 > show #!2 models
    67604 
    67605 > volume gaussian #2 sDev 3
    67606 
    67607 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    67608 at step 1, values float32 
    67609 
    67610 > volume #4 level 0.008185
    67611 
    67612 > turn z 21.17647 models #4 center #3
    67613 
    67614 > volume copy #4
    67615 
    67616 Opened 1unit_rim.mrc gaussian copy as #5, grid size 250,250,250, pixel 4.3,
    67617 shown at step 1, values float32 
    67618 
    67619 > volume #4 show
    67620 
    67621 > turn z 21.17647 models #4 center #3
    67622 
    67623 > volume copy #4
    67624 
    67625 Opened 1unit_rim.mrc gaussian copy as #6, grid size 250,250,250, pixel 4.3,
    67626 shown at step 1, values float32 
    67627 
    67628 > volume #4 show
    67629 
    67630 > turn z 21.17647 models #4 center #3
    67631 
    67632 > volume copy #4
    67633 
    67634 Opened 1unit_rim.mrc gaussian copy as #7, grid size 250,250,250, pixel 4.3,
    67635 shown at step 1, values float32 
    67636 
    67637 > volume #4 show
    67638 
    67639 > turn z 21.17647 models #4 center #3
    67640 
    67641 > volume copy #4
    67642 
    67643 Opened 1unit_rim.mrc gaussian copy as #8, grid size 250,250,250, pixel 4.3,
    67644 shown at step 1, values float32 
    67645 
    67646 > volume #4 show
    67647 
    67648 > turn z 21.17647 models #4 center #3
    67649 
    67650 > volume copy #4
    67651 
    67652 Opened 1unit_rim.mrc gaussian copy as #9, grid size 250,250,250, pixel 4.3,
    67653 shown at step 1, values float32 
    67654 
    67655 > volume #4 show
    67656 
    67657 > turn z 21.17647 models #4 center #3
    67658 
    67659 > volume copy #4
    67660 
    67661 Opened 1unit_rim.mrc gaussian copy as #10, grid size 250,250,250, pixel 4.3,
    67662 shown at step 1, values float32 
    67663 
    67664 > volume #4 show
    67665 
    67666 > turn z 21.17647 models #4 center #3
    67667 
    67668 > volume copy #4
    67669 
    67670 Opened 1unit_rim.mrc gaussian copy as #11, grid size 250,250,250, pixel 4.3,
    67671 shown at step 1, values float32 
    67672 
    67673 > volume #4 show
    67674 
    67675 > turn z 21.17647 models #4 center #3
    67676 
    67677 > volume copy #4
    67678 
    67679 Opened 1unit_rim.mrc gaussian copy as #12, grid size 250,250,250, pixel 4.3,
    67680 shown at step 1, values float32 
    67681 
    67682 > volume #4 show
    67683 
    67684 > turn z 21.17647 models #4 center #3
    67685 
    67686 > volume copy #4
    67687 
    67688 Opened 1unit_rim.mrc gaussian copy as #13, grid size 250,250,250, pixel 4.3,
    67689 shown at step 1, values float32 
    67690 
    67691 > volume #4 show
    67692 
    67693 > turn z 21.17647 models #4 center #3
    67694 
    67695 > volume copy #4
    67696 
    67697 Opened 1unit_rim.mrc gaussian copy as #14, grid size 250,250,250, pixel 4.3,
    67698 shown at step 1, values float32 
    67699 
    67700 > volume #4 show
    67701 
    67702 > turn z 21.17647 models #4 center #3
    67703 
    67704 > volume copy #4
    67705 
    67706 Opened 1unit_rim.mrc gaussian copy as #15, grid size 250,250,250, pixel 4.3,
    67707 shown at step 1, values float32 
    67708 
    67709 > volume #4 show
    67710 
    67711 > turn z 21.17647 models #4 center #3
    67712 
    67713 > volume copy #4
    67714 
    67715 Opened 1unit_rim.mrc gaussian copy as #16, grid size 250,250,250, pixel 4.3,
    67716 shown at step 1, values float32 
    67717 
    67718 > volume #4 show
    67719 
    67720 > turn z 21.17647 models #4 center #3
    67721 
    67722 > volume copy #4
    67723 
    67724 Opened 1unit_rim.mrc gaussian copy as #17, grid size 250,250,250, pixel 4.3,
    67725 shown at step 1, values float32 
    67726 
    67727 > volume #4 show
    67728 
    67729 > turn z 21.17647 models #4 center #3
    67730 
    67731 > volume copy #4
    67732 
    67733 Opened 1unit_rim.mrc gaussian copy as #18, grid size 250,250,250, pixel 4.3,
    67734 shown at step 1, values float32 
    67735 
    67736 > volume #4 show
    67737 
    67738 > turn z 21.17647 models #4 center #3
    67739 
    67740 > volume copy #4
    67741 
    67742 Opened 1unit_rim.mrc gaussian copy as #19, grid size 250,250,250, pixel 4.3,
    67743 shown at step 1, values float32 
    67744 
    67745 > volume #4 show
    67746 
    67747 > turn z 21.17647 models #4 center #3
    67748 
    67749 > volume copy #4
    67750 
    67751 Opened 1unit_rim.mrc gaussian copy as #20, grid size 250,250,250, pixel 4.3,
    67752 shown at step 1, values float32 
    67753 
    67754 > volume #4 show
    67755 
    67756 > hide #!4 models
    67757 
    67758 > open /Users/shoichitachiyama/Desktop/tmp/1unit_PflA.mrc
    67759 
    67760 Opened 1unit_PflA.mrc as #21, grid size 250,250,250, pixel 4.3, shown at level
    67761 0.00904, step 1, values float32 
    67762 
    67763 > turn z 21.17647 models #21 center #3
    67764 
    67765 > volume copy #21
    67766 
    67767 Opened 1unit_PflA.mrc copy as #22, grid size 250,250,250, pixel 4.3, shown at
    67768 step 1, values float32 
    67769 
    67770 > volume #21 show
    67771 
    67772 > turn z 21.17647 models #21 center #3
    67773 
    67774 > volume copy #21
    67775 
    67776 Opened 1unit_PflA.mrc copy as #23, grid size 250,250,250, pixel 4.3, shown at
    67777 step 1, values float32 
    67778 
    67779 > volume #21 show
    67780 
    67781 > turn z 21.17647 models #21 center #3
    67782 
    67783 > volume copy #21
    67784 
    67785 Opened 1unit_PflA.mrc copy as #24, grid size 250,250,250, pixel 4.3, shown at
    67786 step 1, values float32 
    67787 
    67788 > volume #21 show
    67789 
    67790 > turn z 21.17647 models #21 center #3
    67791 
    67792 > volume copy #21
    67793 
    67794 Opened 1unit_PflA.mrc copy as #25, grid size 250,250,250, pixel 4.3, shown at
    67795 step 1, values float32 
    67796 
    67797 > volume #21 show
    67798 
    67799 > turn z 21.17647 models #21 center #3
    67800 
    67801 > volume copy #21
    67802 
    67803 Opened 1unit_PflA.mrc copy as #26, grid size 250,250,250, pixel 4.3, shown at
    67804 step 1, values float32 
    67805 
    67806 > volume #21 show
    67807 
    67808 > turn z 21.17647 models #21 center #3
    67809 
    67810 > volume copy #21
    67811 
    67812 Opened 1unit_PflA.mrc copy as #27, grid size 250,250,250, pixel 4.3, shown at
    67813 step 1, values float32 
    67814 
    67815 > volume #21 show
    67816 
    67817 > turn z 21.17647 models #21 center #3
    67818 
    67819 > volume copy #21
    67820 
    67821 Opened 1unit_PflA.mrc copy as #28, grid size 250,250,250, pixel 4.3, shown at
    67822 step 1, values float32 
    67823 
    67824 > volume #21 show
    67825 
    67826 > turn z 21.17647 models #21 center #3
    67827 
    67828 > volume copy #21
    67829 
    67830 Opened 1unit_PflA.mrc copy as #29, grid size 250,250,250, pixel 4.3, shown at
    67831 step 1, values float32 
    67832 
    67833 > volume #21 show
    67834 
    67835 > turn z 21.17647 models #21 center #3
    67836 
    67837 > volume copy #21
    67838 
    67839 Opened 1unit_PflA.mrc copy as #30, grid size 250,250,250, pixel 4.3, shown at
    67840 step 1, values float32 
    67841 
    67842 > volume #21 show
    67843 
    67844 > turn z 21.17647 models #21 center #3
    67845 
    67846 > volume copy #21
    67847 
    67848 Opened 1unit_PflA.mrc copy as #31, grid size 250,250,250, pixel 4.3, shown at
    67849 step 1, values float32 
    67850 
    67851 > volume #21 show
    67852 
    67853 > turn z 21.17647 models #21 center #3
    67854 
    67855 > volume copy #21
    67856 
    67857 Opened 1unit_PflA.mrc copy as #32, grid size 250,250,250, pixel 4.3, shown at
    67858 step 1, values float32 
    67859 
    67860 > volume #21 show
    67861 
    67862 > turn z 21.17647 models #21 center #3
    67863 
    67864 > volume copy #21
    67865 
    67866 Opened 1unit_PflA.mrc copy as #33, grid size 250,250,250, pixel 4.3, shown at
    67867 step 1, values float32 
    67868 
    67869 > volume #21 show
    67870 
    67871 > turn z 21.17647 models #21 center #3
    67872 
    67873 > volume copy #21
    67874 
    67875 Opened 1unit_PflA.mrc copy as #34, grid size 250,250,250, pixel 4.3, shown at
    67876 step 1, values float32 
    67877 
    67878 > volume #21 show
    67879 
    67880 > turn z 21.17647 models #21 center #3
    67881 
    67882 > volume copy #21
    67883 
    67884 Opened 1unit_PflA.mrc copy as #35, grid size 250,250,250, pixel 4.3, shown at
    67885 step 1, values float32 
    67886 
    67887 > volume #21 show
    67888 
    67889 > turn z 21.17647 models #21 center #3
    67890 
    67891 > volume copy #21
    67892 
    67893 Opened 1unit_PflA.mrc copy as #36, grid size 250,250,250, pixel 4.3, shown at
    67894 step 1, values float32 
    67895 
    67896 > volume #21 show
    67897 
    67898 > turn z 21.17647 models #21 center #3
    67899 
    67900 > volume copy #21
    67901 
    67902 Opened 1unit_PflA.mrc copy as #37, grid size 250,250,250, pixel 4.3, shown at
    67903 step 1, values float32 
    67904 
    67905 > volume #21 show
    67906 
    67907 > turn z 21.17647 models #21 center #3
    67908 
    67909 > volume copy #21
    67910 
    67911 Opened 1unit_PflA.mrc copy as #38, grid size 250,250,250, pixel 4.3, shown at
    67912 step 1, values float32 
    67913 
    67914 > volume #21 show
    67915 
    67916 > hide #!21 models
    67917 
    67918 > open /Users/shoichitachiyama/Desktop/tmp/FliL_out.mrc
    67919 
    67920 Opened FliL_out.mrc as #39, grid size 250,250,250, pixel 4.3, shown at level
    67921 0.00908, step 1, values float32 
    67922 
    67923 > hide #!38 models
    67924 
    67925 > hide #!37 models
    67926 
    67927 > hide #!36 models
    67928 
    67929 > hide #!35 models
    67930 
    67931 > hide #!34 models
    67932 
    67933 > hide #!33 models
    67934 
    67935 > hide #!31 models
    67936 
    67937 > hide #!32 models
    67938 
    67939 > hide #!30 models
    67940 
    67941 > hide #!29 models
    67942 
    67943 > hide #!27 models
    67944 
    67945 > hide #!28 models
    67946 
    67947 > hide #!26 models
    67948 
    67949 > hide #!25 models
    67950 
    67951 > hide #!24 models
    67952 
    67953 > hide #!23 models
    67954 
    67955 > hide #!22 models
    67956 
    67957 > hide #!20 models
    67958 
    67959 > hide #!18 models
    67960 
    67961 > hide #!19 models
    67962 
    67963 > hide #!17 models
    67964 
    67965 > hide #!16 models
    67966 
    67967 > hide #!15 models
    67968 
    67969 > hide #!14 models
    67970 
    67971 > hide #!13 models
    67972 
    67973 > hide #!12 models
    67974 
    67975 > hide #!11 models
    67976 
    67977 > hide #!10 models
    67978 
    67979 > hide #!9 models
    67980 
    67981 > hide #!8 models
    67982 
    67983 > hide #!7 models
    67984 
    67985 > hide #!6 models
    67986 
    67987 > hide #!5 models
    67988 
    67989 > hide #!1 models
    67990 
    67991 > show #!1 models
    67992 
    67993 > hide #!1 models
    67994 
    67995 > show #!1 models
    67996 
    67997 > volume gaussian #39 sDev 2
    67998 
    67999 Opened FliL_out.mrc gaussian as #40, grid size 250,250,250, pixel 4.3, shown
    68000 at step 1, values float32 
    68001 
    68002 > turn z 21.17647 models #40 center #3
    68003 
    68004 > volume copy #40
    68005 
    68006 Opened FliL_out.mrc gaussian copy as #41, grid size 250,250,250, pixel 4.3,
    68007 shown at step 1, values float32 
    68008 
    68009 > volume #40 show
    68010 
    68011 > turn z 21.17647 models #40 center #3
    68012 
    68013 > volume copy #40
    68014 
    68015 Opened FliL_out.mrc gaussian copy as #42, grid size 250,250,250, pixel 4.3,
    68016 shown at step 1, values float32 
    68017 
    68018 > volume #40 show
    68019 
    68020 > turn z 21.17647 models #40 center #3
    68021 
    68022 > volume copy #40
    68023 
    68024 Opened FliL_out.mrc gaussian copy as #43, grid size 250,250,250, pixel 4.3,
    68025 shown at step 1, values float32 
    68026 
    68027 > volume #40 show
    68028 
    68029 > turn z 21.17647 models #40 center #3
    68030 
    68031 > volume copy #40
    68032 
    68033 Opened FliL_out.mrc gaussian copy as #44, grid size 250,250,250, pixel 4.3,
    68034 shown at step 1, values float32 
    68035 
    68036 > volume #40 show
    68037 
    68038 > turn z 21.17647 models #40 center #3
    68039 
    68040 > volume copy #40
    68041 
    68042 Opened FliL_out.mrc gaussian copy as #45, grid size 250,250,250, pixel 4.3,
    68043 shown at step 1, values float32 
    68044 
    68045 > volume #40 show
    68046 
    68047 > turn z 21.17647 models #40 center #3
    68048 
    68049 > volume copy #40
    68050 
    68051 Opened FliL_out.mrc gaussian copy as #46, grid size 250,250,250, pixel 4.3,
    68052 shown at step 1, values float32 
    68053 
    68054 > volume #40 show
    68055 
    68056 > turn z 21.17647 models #40 center #3
    68057 
    68058 > volume copy #40
    68059 
    68060 Opened FliL_out.mrc gaussian copy as #47, grid size 250,250,250, pixel 4.3,
    68061 shown at step 1, values float32 
    68062 
    68063 > volume #40 show
    68064 
    68065 > turn z 21.17647 models #40 center #3
    68066 
    68067 > volume copy #40
    68068 
    68069 Opened FliL_out.mrc gaussian copy as #48, grid size 250,250,250, pixel 4.3,
    68070 shown at step 1, values float32 
    68071 
    68072 > volume #40 show
    68073 
    68074 > turn z 21.17647 models #40 center #3
    68075 
    68076 > volume copy #40
    68077 
    68078 Opened FliL_out.mrc gaussian copy as #49, grid size 250,250,250, pixel 4.3,
    68079 shown at step 1, values float32 
    68080 
    68081 > volume #40 show
    68082 
    68083 > turn z 21.17647 models #40 center #3
    68084 
    68085 > volume copy #40
    68086 
    68087 Opened FliL_out.mrc gaussian copy as #50, grid size 250,250,250, pixel 4.3,
    68088 shown at step 1, values float32 
    68089 
    68090 > volume #40 show
    68091 
    68092 > turn z 21.17647 models #40 center #3
    68093 
    68094 > volume copy #40
    68095 
    68096 Opened FliL_out.mrc gaussian copy as #51, grid size 250,250,250, pixel 4.3,
    68097 shown at step 1, values float32 
    68098 
    68099 > volume #40 show
    68100 
    68101 > turn z 21.17647 models #40 center #3
    68102 
    68103 > volume copy #40
    68104 
    68105 Opened FliL_out.mrc gaussian copy as #52, grid size 250,250,250, pixel 4.3,
    68106 shown at step 1, values float32 
    68107 
    68108 > volume #40 show
    68109 
    68110 > turn z 21.17647 models #40 center #3
    68111 
    68112 > volume copy #40
    68113 
    68114 Opened FliL_out.mrc gaussian copy as #53, grid size 250,250,250, pixel 4.3,
    68115 shown at step 1, values float32 
    68116 
    68117 > volume #40 show
    68118 
    68119 > turn z 21.17647 models #40 center #3
    68120 
    68121 > volume copy #40
    68122 
    68123 Opened FliL_out.mrc gaussian copy as #54, grid size 250,250,250, pixel 4.3,
    68124 shown at step 1, values float32 
    68125 
    68126 > volume #40 show
    68127 
    68128 > turn z 21.17647 models #40 center #3
    68129 
    68130 > volume copy #40
    68131 
    68132 Opened FliL_out.mrc gaussian copy as #55, grid size 250,250,250, pixel 4.3,
    68133 shown at step 1, values float32 
    68134 
    68135 > volume #40 show
    68136 
    68137 > turn z 21.17647 models #40 center #3
    68138 
    68139 > volume copy #40
    68140 
    68141 Opened FliL_out.mrc gaussian copy as #56, grid size 250,250,250, pixel 4.3,
    68142 shown at step 1, values float32 
    68143 
    68144 > volume #40 show
    68145 
    68146 > turn z 21.17647 models #40 center #3
    68147 
    68148 > volume copy #40
    68149 
    68150 Opened FliL_out.mrc gaussian copy as #57, grid size 250,250,250, pixel 4.3,
    68151 shown at step 1, values float32 
    68152 
    68153 > volume #40 show
    68154 
    68155 > open /Users/shoichitachiyama/Desktop/tmp/FliL.mrc
    68156 
    68157 Opened FliL.mrc as #58, grid size 250,250,250, pixel 4.3, shown at level
    68158 0.00921, step 1, values float32 
    68159 
    68160 > close #40-58
    68161 
    68162 > hide #!1 models
    68163 
    68164 > show #!39 models
    68165 
    68166 > ui tool show "Map Eraser"
    68167 
    68168 Can only have one displayed volume when erasing 
    68169 
    68170 [Repeated 1 time(s)]
    68171 
    68172 > hide #!3 models
    68173 
    68174 > volume erase #39 center 850.21,719.14,614.23 radius 179.9
    68175 
    68176 Opened FliL_out.mrc copy as #41, grid size 250,250,250, pixel 4.3, shown at
    68177 step 1, values float32 
    68178 
    68179 > close #40
    68180 
    68181 > show #!3 models
    68182 
    68183 > close #39
    68184 
    68185 > view orient
    68186 
    68187 > turn z 21.17647 models #41 center #3
    68188 
    68189 > volume copy #41
    68190 
    68191 Opened FliL_out.mrc copy as #39, grid size 250,250,250, pixel 4.3, shown at
    68192 step 1, values float32 
    68193 
    68194 > volume #41 show
    68195 
    68196 > turn z 21.17647 models #41 center #3
    68197 
    68198 > volume copy #41
    68199 
    68200 Opened FliL_out.mrc copy as #40, grid size 250,250,250, pixel 4.3, shown at
    68201 step 1, values float32 
    68202 
    68203 > volume #41 show
    68204 
    68205 > turn z 21.17647 models #41 center #3
    68206 
    68207 > volume copy #41
    68208 
    68209 Opened FliL_out.mrc copy as #42, grid size 250,250,250, pixel 4.3, shown at
    68210 step 1, values float32 
    68211 
    68212 > volume #41 show
    68213 
    68214 > turn z 21.17647 models #41 center #3
    68215 
    68216 > volume copy #41
    68217 
    68218 Opened FliL_out.mrc copy as #43, grid size 250,250,250, pixel 4.3, shown at
    68219 step 1, values float32 
    68220 
    68221 > volume #41 show
    68222 
    68223 > turn z 21.17647 models #41 center #3
    68224 
    68225 > volume copy #41
    68226 
    68227 Opened FliL_out.mrc copy as #44, grid size 250,250,250, pixel 4.3, shown at
    68228 step 1, values float32 
    68229 
    68230 > volume #41 show
    68231 
    68232 > turn z 21.17647 models #41 center #3
    68233 
    68234 > volume copy #41
    68235 
    68236 Opened FliL_out.mrc copy as #45, grid size 250,250,250, pixel 4.3, shown at
    68237 step 1, values float32 
    68238 
    68239 > volume #41 show
    68240 
    68241 > turn z 21.17647 models #41 center #3
    68242 
    68243 > volume copy #41
    68244 
    68245 Opened FliL_out.mrc copy as #46, grid size 250,250,250, pixel 4.3, shown at
    68246 step 1, values float32 
    68247 
    68248 > volume #41 show
    68249 
    68250 > turn z 21.17647 models #41 center #3
    68251 
    68252 > volume copy #41
    68253 
    68254 Opened FliL_out.mrc copy as #47, grid size 250,250,250, pixel 4.3, shown at
    68255 step 1, values float32 
    68256 
    68257 > volume #41 show
    68258 
    68259 > turn z 21.17647 models #41 center #3
    68260 
    68261 > volume copy #41
    68262 
    68263 Opened FliL_out.mrc copy as #48, grid size 250,250,250, pixel 4.3, shown at
    68264 step 1, values float32 
    68265 
    68266 > volume #41 show
    68267 
    68268 > turn z 21.17647 models #41 center #3
    68269 
    68270 > volume copy #41
    68271 
    68272 Opened FliL_out.mrc copy as #49, grid size 250,250,250, pixel 4.3, shown at
    68273 step 1, values float32 
    68274 
    68275 > volume #41 show
    68276 
    68277 > turn z 21.17647 models #41 center #3
    68278 
    68279 > volume copy #41
    68280 
    68281 Opened FliL_out.mrc copy as #50, grid size 250,250,250, pixel 4.3, shown at
    68282 step 1, values float32 
    68283 
    68284 > volume #41 show
    68285 
    68286 > turn z 21.17647 models #41 center #3
    68287 
    68288 > volume copy #41
    68289 
    68290 Opened FliL_out.mrc copy as #51, grid size 250,250,250, pixel 4.3, shown at
    68291 step 1, values float32 
    68292 
    68293 > volume #41 show
    68294 
    68295 > turn z 21.17647 models #41 center #3
    68296 
    68297 > volume copy #41
    68298 
    68299 Opened FliL_out.mrc copy as #52, grid size 250,250,250, pixel 4.3, shown at
    68300 step 1, values float32 
    68301 
    68302 > volume #41 show
    68303 
    68304 > turn z 21.17647 models #41 center #3
    68305 
    68306 > volume copy #41
    68307 
    68308 Opened FliL_out.mrc copy as #53, grid size 250,250,250, pixel 4.3, shown at
    68309 step 1, values float32 
    68310 
    68311 > volume #41 show
    68312 
    68313 > turn z 21.17647 models #41 center #3
    68314 
    68315 > volume copy #41
    68316 
    68317 Opened FliL_out.mrc copy as #54, grid size 250,250,250, pixel 4.3, shown at
    68318 step 1, values float32 
    68319 
    68320 > volume #41 show
    68321 
    68322 > turn z 21.17647 models #41 center #3
    68323 
    68324 > volume copy #41
    68325 
    68326 Opened FliL_out.mrc copy as #55, grid size 250,250,250, pixel 4.3, shown at
    68327 step 1, values float32 
    68328 
    68329 > volume #41 show
    68330 
    68331 > turn z 21.17647 models #41 center #3
    68332 
    68333 > volume copy #41
    68334 
    68335 Opened FliL_out.mrc copy as #56, grid size 250,250,250, pixel 4.3, shown at
    68336 step 1, values float32 
    68337 
    68338 > volume #41 show
    68339 
    68340 > open /Users/shoichitachiyama/Desktop/tmp/FliL.mrc
    68341 
    68342 Opened FliL.mrc as #57, grid size 250,250,250, pixel 4.3, shown at level
    68343 0.00921, step 1, values float32 
    68344 
    68345 > view orient
    68346 
    68347 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68348 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68349 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Cage-Mono-Good.mrc"
    68350 
    68351 Opened Cage-Mono-Good.mrc as #58, grid size 250,250,250, pixel 4.3, shown at
    68352 level 0.00905, step 1, values float32 
    68353 
    68354 > view orient
    68355 
    68356 > turn z 21.17647 models #58 center #3
    68357 
    68358 > volume copy #58
    68359 
    68360 Opened Cage-Mono-Good.mrc copy as #59, grid size 250,250,250, pixel 4.3, shown
    68361 at step 1, values float32 
    68362 
    68363 > volume #58 show
    68364 
    68365 > turn z 21.17647 models #58 center #3
    68366 
    68367 > volume copy #58
    68368 
    68369 Opened Cage-Mono-Good.mrc copy as #60, grid size 250,250,250, pixel 4.3, shown
    68370 at step 1, values float32 
    68371 
    68372 > volume #58 show
    68373 
    68374 > turn z 21.17647 models #58 center #3
    68375 
    68376 > volume copy #58
    68377 
    68378 Opened Cage-Mono-Good.mrc copy as #61, grid size 250,250,250, pixel 4.3, shown
    68379 at step 1, values float32 
    68380 
    68381 > volume #58 show
    68382 
    68383 > turn z 21.17647 models #58 center #3
    68384 
    68385 > volume copy #58
    68386 
    68387 Opened Cage-Mono-Good.mrc copy as #62, grid size 250,250,250, pixel 4.3, shown
    68388 at step 1, values float32 
    68389 
    68390 > volume #58 show
    68391 
    68392 > turn z 21.17647 models #58 center #3
    68393 
    68394 > volume copy #58
    68395 
    68396 Opened Cage-Mono-Good.mrc copy as #63, grid size 250,250,250, pixel 4.3, shown
    68397 at step 1, values float32 
    68398 
    68399 > volume #58 show
    68400 
    68401 > turn z 21.17647 models #58 center #3
    68402 
    68403 > volume copy #58
    68404 
    68405 Opened Cage-Mono-Good.mrc copy as #64, grid size 250,250,250, pixel 4.3, shown
    68406 at step 1, values float32 
    68407 
    68408 > volume #58 show
    68409 
    68410 > turn z 21.17647 models #58 center #3
    68411 
    68412 > volume copy #58
    68413 
    68414 Opened Cage-Mono-Good.mrc copy as #65, grid size 250,250,250, pixel 4.3, shown
    68415 at step 1, values float32 
    68416 
    68417 > volume #58 show
    68418 
    68419 > turn z 21.17647 models #58 center #3
    68420 
    68421 > volume copy #58
    68422 
    68423 Opened Cage-Mono-Good.mrc copy as #66, grid size 250,250,250, pixel 4.3, shown
    68424 at step 1, values float32 
    68425 
    68426 > volume #58 show
    68427 
    68428 > turn z 21.17647 models #58 center #3
    68429 
    68430 > volume copy #58
    68431 
    68432 Opened Cage-Mono-Good.mrc copy as #67, grid size 250,250,250, pixel 4.3, shown
    68433 at step 1, values float32 
    68434 
    68435 > volume #58 show
    68436 
    68437 > turn z 21.17647 models #58 center #3
    68438 
    68439 > volume copy #58
    68440 
    68441 Opened Cage-Mono-Good.mrc copy as #68, grid size 250,250,250, pixel 4.3, shown
    68442 at step 1, values float32 
    68443 
    68444 > volume #58 show
    68445 
    68446 > turn z 21.17647 models #58 center #3
    68447 
    68448 > volume copy #58
    68449 
    68450 Opened Cage-Mono-Good.mrc copy as #69, grid size 250,250,250, pixel 4.3, shown
    68451 at step 1, values float32 
    68452 
    68453 > volume #58 show
    68454 
    68455 > turn z 21.17647 models #58 center #3
    68456 
    68457 > volume copy #58
    68458 
    68459 Opened Cage-Mono-Good.mrc copy as #70, grid size 250,250,250, pixel 4.3, shown
    68460 at step 1, values float32 
    68461 
    68462 > volume #58 show
    68463 
    68464 > turn z 21.17647 models #58 center #3
    68465 
    68466 > volume copy #58
    68467 
    68468 Opened Cage-Mono-Good.mrc copy as #71, grid size 250,250,250, pixel 4.3, shown
    68469 at step 1, values float32 
    68470 
    68471 > volume #58 show
    68472 
    68473 > turn z 21.17647 models #58 center #3
    68474 
    68475 > volume copy #58
    68476 
    68477 Opened Cage-Mono-Good.mrc copy as #72, grid size 250,250,250, pixel 4.3, shown
    68478 at step 1, values float32 
    68479 
    68480 > volume #58 show
    68481 
    68482 > turn z 21.17647 models #58 center #3
    68483 
    68484 > volume copy #58
    68485 
    68486 Opened Cage-Mono-Good.mrc copy as #73, grid size 250,250,250, pixel 4.3, shown
    68487 at step 1, values float32 
    68488 
    68489 > volume #58 show
    68490 
    68491 > turn z 21.17647 models #58 center #3
    68492 
    68493 > volume copy #58
    68494 
    68495 Opened Cage-Mono-Good.mrc copy as #74, grid size 250,250,250, pixel 4.3, shown
    68496 at step 1, values float32 
    68497 
    68498 > volume #58 show
    68499 
    68500 > turn z 21.17647 models #58 center #3
    68501 
    68502 > volume copy #58
    68503 
    68504 Opened Cage-Mono-Good.mrc copy as #75, grid size 250,250,250, pixel 4.3, shown
    68505 at step 1, values float32 
    68506 
    68507 > volume #58 show
    68508 
    68509 > surface dust #1-58 size 30
    68510 
    68511 > volume #75 level 0.01374
    68512 
    68513 > volume #1-75 level 0.01374
    68514 
    68515 > view orient
    68516 
    68517 > open /Users/shoichitachiyama/Desktop/tmp/MS-ring.mrc
    68518 
    68519 Opened MS-ring.mrc as #76, grid size 250,250,250, pixel 4.3, shown at level
    68520 0.00931, step 1, values float32 
    68521 
    68522 > open /Users/shoichitachiyama/Desktop/tmp/E-ring.mrc
    68523 
    68524 Opened E-ring.mrc as #77, grid size 250,250,250, pixel 4.3, shown at level
    68525 0.00927, step 1, values float32 
    68526 
    68527 > volume gaussian #77 sDev 2
    68528 
    68529 Opened E-ring.mrc gaussian as #78, grid size 250,250,250, pixel 4.3, shown at
    68530 step 1, values float32 
    68531 
    68532 > close #77
    68533 
    68534 > volume #1-77 level 0.01374
    68535 
    68536 > volume #1-78 level 0.01374
    68537 
    68538 > show #!4 models
    68539 
    68540 > show #!5 models
    68541 
    68542 > show #!6 models
    68543 
    68544 > show #!7 models
    68545 
    68546 > show #!8 models
    68547 
    68548 > show #!9 models
    68549 
    68550 > show #!10 models
    68551 
    68552 > show #!11 models
    68553 
    68554 > show #!12 models
    68555 
    68556 > show #!13 models
    68557 
    68558 > show #!14 models
    68559 
    68560 > show #!15 models
    68561 
    68562 > show #!16 models
    68563 
    68564 > show #!17 models
    68565 
    68566 > show #!18 models
    68567 
    68568 > show #!19 models
    68569 
    68570 > show #!20 models
    68571 
    68572 > show #!2 models
    68573 
    68574 > hide #!2 models
    68575 
    68576 > hide #!20 models
    68577 
    68578 > show #!20 models
    68579 
    68580 > hide #!20 models
    68581 
    68582 > show #!20 models
    68583 
    68584 > show #!20
    68585 
    68586 > hide #!20 models
    68587 
    68588 > show #!20 models
    68589 
    68590 > hide #20.1 models
    68591 
    68592 > show #20.1 models
    68593 
    68594 > hide #!4 models
    68595 
    68596 > show #!4 models
    68597 
    68598 > hide #4.1 models
    68599 
    68600 > show #4.1 models
    68601 
    68602 > hide #!4 models
    68603 
    68604 > show #!1 models
    68605 
    68606 > hide #!1 models
    68607 
    68608 > show #!4 models
    68609 
    68610 > show #!2 models
    68611 
    68612 > hide #!2 models
    68613 
    68614 > close #4
    68615 
    68616 > volume gaussian #2 sDev 3
    68617 
    68618 Opened 1unit_rim.mrc gaussian as #4, grid size 250,250,250, pixel 4.3, shown
    68619 at step 1, values float32 
    68620 
    68621 > volume #1-78 level 0.01374
    68622 
    68623 > show #!21 models
    68624 
    68625 > show #!22 models
    68626 
    68627 > show #!23 models
    68628 
    68629 > show #!24 models
    68630 
    68631 > show #!25 models
    68632 
    68633 > show #!26 models
    68634 
    68635 > show #!27 models
    68636 
    68637 > show #!28 models
    68638 
    68639 > show #!38 models
    68640 
    68641 > show #!37 models
    68642 
    68643 > show #!36 models
    68644 
    68645 > show #!35 models
    68646 
    68647 > show #!34 models
    68648 
    68649 > show #!33 models
    68650 
    68651 > show #!32 models
    68652 
    68653 > show #!31 models
    68654 
    68655 > show #!30 models
    68656 
    68657 > show #!29 models
    68658 
    68659 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68660 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68661 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Basal_disk.mrc"
    68662 
    68663 Opened Basal_disk.mrc as #77, grid size 250,250,250, pixel 4.3, shown at level
    68664 0.128, step 1, values float32 
    68665 
    68666 > volume #77 level 0.0137
    68667 
    68668 > volume gaussian #77 sDev 3
    68669 
    68670 Opened Basal_disk.mrc gaussian as #79, grid size 250,250,250, pixel 4.3, shown
    68671 at step 1, values float32 
    68672 
    68673 > close #77
    68674 
    68675 > volume #79 level 0.0137
    68676 
    68677 > volume #79 level 0.02553
    68678 
    68679 > volume #79 level 0.05953
    68680 
    68681 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68682 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68683 > review/Updated_Figures/07252025/Original-map-deposit/Seg/C-ring-stators.mrc"
    68684 
    68685 Opened C-ring-stators.mrc as #77, grid size 250,250,250, pixel 4.3, shown at
    68686 level 0.0725, step 1, values float32 
    68687 
    68688 > volume #77 level 0.0595
    68689 
    68690 > volume #77 level 0.0137
    68691 
    68692 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68693 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68694 > review/Updated_Figures/07252025/Original-map-deposit/Seg/C-Vring.mrc"
    68695 
    68696 Opened C-Vring.mrc as #80, grid size 250,250,250, pixel 4.3, shown at level
    68697 0.00961, step 1, values float32 
    68698 
    68699 > volume #80 level 0.0137
    68700 
    68701 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68702 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68703 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Exp_ATP.mrc"
    68704 
    68705 Opened Exp_ATP.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    68706 0.00943, step 1, values float32 
    68707 
    68708 > volume #81 level 0.0137
    68709 
    68710 > volume gaussian #81 sDev 4
    68711 
    68712 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    68713 step 1, values float32 
    68714 
    68715 > close #81
    68716 
    68717 > volume #82 level 0.0137
    68718 
    68719 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68720 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68721 > review/Updated_Figures/07252025/Original-map-deposit/Seg/LP-ring.mrc"
    68722 
    68723 Opened LP-ring.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    68724 0.00947, step 1, values float32 
    68725 
    68726 > volume gaussian #81 sDev 3
    68727 
    68728 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    68729 step 1, values float32 
    68730 
    68731 > volume #83 level 0.0137
    68732 
    68733 > close #81
    68734 
    68735 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68736 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68737 > review/Updated_Figures/07252025/Original-map-deposit/Seg/MotB.mrc"
    68738 
    68739 Opened MotB.mrc as #81, grid size 250,250,250, pixel 4.3, shown at level
    68740 0.00929, step 1, values float32 
    68741 
    68742 > volume #81 level 0.0137
    68743 
    68744 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68745 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68746 > review/Updated_Figures/07252025/Original-map-deposit/Seg/PflC.mrc"
    68747 
    68748 Opened PflC.mrc as #84, grid size 250,250,250, pixel 4.3, shown at level
    68749 0.0179, step 1, values float32 
    68750 
    68751 > volume gaussian #84 sDev 3
    68752 
    68753 Opened PflC.mrc gaussian as #85, grid size 250,250,250, pixel 4.3, shown at
    68754 step 1, values float32 
    68755 
    68756 > volume #85 level 0.0137
    68757 
    68758 > volume #85 level 0.03146
    68759 
    68760 > volume #85 level 0.06343
    68761 
    68762 > volume #85 level 0.04389
    68763 
    68764 > surface dust #85\ size 50
    68765 
    68766 Missing or invalid "surfaces" argument: only initial part "#85" of atom
    68767 specifier valid 
    68768 
    68769 > surface dust #85 size 50
    68770 
    68771 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68772 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68773 > review/Updated_Figures/07252025/Original-map-deposit/Seg/PflD.mrc"
    68774 
    68775 Opened PflD.mrc as #86, grid size 250,250,250, pixel 4.3, shown at level
    68776 0.00914, step 1, values float32 
    68777 
    68778 > volume #86 level 0.0137
    68779 
    68780 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68781 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68782 > review/Updated_Figures/07252025/Original-map-deposit/Seg/PilM.mrc"
    68783 
    68784 Opened PilM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level
    68785 0.00952, step 1, values float32 
    68786 
    68787 > close #84
    68788 
    68789 > volume gaussian #85 sDev 3
    68790 
    68791 Opened PflC.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    68792 step 1, values float32 
    68793 
    68794 > show #!85 models
    68795 
    68796 > hide #!84 models
    68797 
    68798 > close #84
    68799 
    68800 > volume gaussian #87 sDev 3
    68801 
    68802 Opened PilM.mrc gaussian as #84, grid size 250,250,250, pixel 4.3, shown at
    68803 step 1, values float32 
    68804 
    68805 > close #87
    68806 
    68807 > volume #84 level 0.0137
    68808 
    68809 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    68810 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    68811 > review/Updated_Figures/07252025/Original-map-deposit/Seg/OM.mrc"
    68812 
    68813 Opened OM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.132,
    68814 step 1, values float32 
    68815 
    68816 > volume #87 level 0.02428
    68817 
    68818 > volume gaussian #87 sDev 7
    68819 
    68820 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at step
    68821 1, values float32 
    68822 
    68823 > volume #88 level 0.02703
    68824 
    68825 > close #87
    68826 
    68827 > open /Users/shoichitachiyama/Desktop/tmp/IM.mrc
    68828 
    68829 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    68830 step 1, values float32 
    68831 
    68832 > volume gaussian #87 sDev 9
    68833 
    68834 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at step
    68835 1, values float32 
    68836 
    68837 > volume #89 level 0.01114
    68838 
    68839 > ui tool show "Side View"
    68840 
    68841 > view orient
    68842 
    68843 > hide #!85 models
    68844 
    68845 > lighting soft
    68846 
    68847 [Repeated 1 time(s)]
    68848 
    68849 > lighting flat
    68850 
    68851 [Repeated 1 time(s)]
    68852 
    68853 > lighting soft
    68854 
    68855 > graphics silhouettes false
    68856 
    68857 > color #21 #eba384ff models
    68858 
    68859 > color #21 #eb9275ff models
    68860 
    68861 > hide #!21 models
    68862 
    68863 > show #!21 models
    68864 
    68865 > hide #!22 models
    68866 
    68867 > show #!22 models
    68868 
    68869 > color #22 #eb3718ff models
    68870 
    68871 > color #22 #eb3d1cff models
    68872 
    68873 > color #22 #eb1334ff models
    68874 
    68875 > color #22-38 #eb1334ff models
    68876 
    68877 > hide #!23 models
    68878 
    68879 > show #!23 models
    68880 
    68881 > hide #!23 models
    68882 
    68883 > show #!23 models
    68884 
    68885 > color #78 #ffc6ffff models
    68886 
    68887 > color #78 #ffe0fdff models
    68888 
    68889 > color #78 #ffd2fbff models
    68890 
    68891 > color #78 #fdd8ffff models
    68892 
    68893 > color #76 #3eff23ff models
    68894 
    68895 > color #76 #1d7710ff models
    68896 
    68897 > color #3 #929292ff models
    68898 
    68899 > color #3 #919191ff models
    68900 
    68901 > color #3 #797979ff models
    68902 
    68903 > color #81 #ff8e21ff models
    68904 
    68905 > color #81 #ff871cff models
    68906 
    68907 > color #81 #ba6315ff models
    68908 
    68909 > volume #89 level 0.006427
    68910 
    68911 > color #86 #2cc9ebff models
    68912 
    68913 > color #58 #24aaffff models
    68914 
    68915 > color #58 #35bdffff models
    68916 
    68917 > color #59 #4496ffff models
    68918 
    68919 > color #59 #488fffff models
    68920 
    68921 > color #59 #2da3ffff models
    68922 
    68923 > color #59 #2698ffff models
    68924 
    68925 > color #59 #2c93ffff models
    68926 
    68927 > color #59-75 #2c93ffff models
    68928 
    68929 > color #4 #ff41fcff models
    68930 
    68931 > color #4 #f046ffff models
    68932 
    68933 > color #4 #fe3dffff models
    68934 
    68935 > color #4-20 #fe3dffff models
    68936 
    68937 > hide #!81 models
    68938 
    68939 > view orient
    68940 
    68941 > color #89 #ffeffbff models
    68942 
    68943 > color #89 #a5ffadff models
    68944 
    68945 > color #89 #466c49ff models
    68946 
    68947 > color #89 #3a5a3dff models
    68948 
    68949 > color #89 #365338ff models
    68950 
    68951 > view orient
    68952 
    68953 > turn x 90
    68954 
    68955 [Repeated 2 time(s)]
    68956 
    68957 > color #75 #2c93fffc models
    68958 
    68959 > color #75 #2c93ffff models
    68960 
    68961 > color #84 #2c93ffff models
    68962 
    68963 > show #!85 models
    68964 
    68965 > color #85 #abe2aeff models
    68966 
    68967 > volume #71 level 0.01374
    68968 
    68969 > volume #74 level 0.007489
    68970 
    68971 > volume #74 level 0.002801
    68972 
    68973 > volume #74 level 0.0137
    68974 
    68975 > volume #89 level 0.01665
    68976 
    68977 > color #44 #fff7b8ff models
    68978 
    68979 > color #44 #ffe68bff models
    68980 
    68981 > color #44 #ffe776ff models
    68982 
    68983 > color #44 #ffe877ff models
    68984 
    68985 > color #44 #e9d46dff models
    68986 
    68987 > color #39-56 #e9d46dff models
    68988 
    68989 > color #77 #919191ff models
    68990 
    68991 > color #77 #797979ff models
    68992 
    68993 > color #82 #797979ff models
    68994 
    68995 > color #80 #797979ff models
    68996 
    68997 > color #88 #4f8f00ff models
    68998 
    68999 > color #88 #008f00ff models
    69000 
    69001 > color #88 #009051ff models
    69002 
    69003 > color #88 #559050ff models
    69004 
    69005 > color #88 #477743ff models
    69006 
    69007 > color #88 #2e4e2cff models
    69008 
    69009 > color #89 #2e4e2cff models
    69010 
    69011 > view orient
    69012 
    69013 > turn x 90
    69014 
    69015 [Repeated 2 time(s)]
    69016 
    69017 > turn y 90
    69018 
    69019 [Repeated 5 time(s)]
    69020 
    69021 > turn y -10
    69022 
    69023 [Repeated 1 time(s)]
    69024 
    69025 > turn x 90
    69026 
    69027 > hide #!85 models
    69028 
    69029 > hide #!86 models
    69030 
    69031 > show #!86 models
    69032 
    69033 > show #!85 models
    69034 
    69035 > hide #!85 models
    69036 
    69037 > show #!81 models
    69038 
    69039 > color #79 #797979ff models
    69040 
    69041 > hide #!79 models
    69042 
    69043 > color #83 #d4fb79ff models
    69044 
    69045 > color #83 #b5fb6cff models
    69046 
    69047 > color #83 #d2fbbfff models
    69048 
    69049 > color #83 #d2fbbbff models
    69050 
    69051 > color #83 #b4fba8ff models
    69052 
    69053 > color #83 #c2fbafff models
    69054 
    69055 > color #83 #c1fbafff models
    69056 
    69057 > hide #!83 models
    69058 
    69059 > volume #78 level 0.0273
    69060 
    69061 > volume #78 level 0.0137
    69062 
    69063 > volume #76 level 0.01374
    69064 
    69065 > volume #76 level 0.006688
    69066 
    69067 > volume #76 level 0.0137
    69068 
    69069 > volume #78 level 0.2392
    69070 
    69071 > volume #78 level 0.1137
    69072 
    69073 > save /Users/shoichitachiyama/Desktop/tmp/Figure-1.cxs includeMaps true
    69074 
    69075 ——— End of log from Fri Jul 25 22:07:01 2025 ———
    69076 
    69077 opened ChimeraX session 
    69078 
    69079 > ui tool show "Side View"
    69080 
    69081 > save /Users/shoichi/Desktop/For_Composition-maps/Global_Segment_Fig1.cxs
    69082 > includeMaps true
    69083 
    69084 ——— End of log from Tue Sep 9 09:30:49 2025 ———
    69085 
    69086 opened ChimeraX session 
    69087 
    69088 > hide #!3 models
    69089 
    69090 > show #!3 models
    69091 
    69092 > hide #!3 models
    69093 
    69094 > hide #!4 models
    69095 
    69096 > hide #!5 models
    69097 
    69098 > hide #!6 models
    69099 
    69100 > hide #!7 models
    69101 
    69102 > hide #!8 models
    69103 
    69104 > hide #!9 models
    69105 
    69106 > hide #!10 models
    69107 
    69108 > hide #!11 models
    69109 
    69110 > hide #!12 models
    69111 
    69112 > hide #!13 models
    69113 
    69114 > hide #!14 models
    69115 
    69116 > hide #!15 models
    69117 
    69118 > hide #!17 models
    69119 
    69120 > hide #!18 models
    69121 
    69122 > hide #!19 models
    69123 
    69124 > hide #!20 models
    69125 
    69126 > hide #!21 models
    69127 
    69128 > hide #!16 models
    69129 
    69130 > hide #!22 models
    69131 
    69132 > hide #!22-57 models
    69133 
    69134 > hide #!88 models
    69135 
    69136 > hide #!89 models
    69137 
    69138 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69139 > Compositions/Resegment_for-C17_FlgY/C17-FlgY_New.mrc"
    69140 
    69141 Opened C17-FlgY_New.mrc as #90, grid size 256,256,256, pixel 2.14, shown at
    69142 level 0.0212, step 1, values float32 
    69143 
    69144 > select add #90
    69145 
    69146 2 models selected 
    69147 
    69148 > ui mousemode right "translate selected models"
    69149 
    69150 > view matrix models #90,1,0,0,245.65,0,1,0,1.0032,0,0,1,74.641
    69151 
    69152 > view matrix models #90,1,0,0,184.1,0,1,0,167.05,0,0,1,228.41
    69153 
    69154 > view matrix models #90,1,0,0,271.38,0,1,0,269.89,0,0,1,245.5
    69155 
    69156 > view matrix models #90,1,0,0,244.99,0,1,0,277.14,0,0,1,184.64
    69157 
    69158 > ui tool show "Fit in Map"
    69159 
    69160 > fitmap #90 inMap #78
    69161 
    69162 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    69163 correlation = 0.1097, correlation about mean = 0.1148, overlap = 135.6 
    69164 steps = 320, shift = 15.1, angle = 1.23 degrees 
    69165  
    69166 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    69167 coordinates: 
    69168 Matrix rotation and translation 
    69169 0.99982891 -0.00230575 0.01835296 226.46472726 
    69170 0.00250823 0.99993617 -0.01101686 275.00777671 
    69171 -0.01832639 0.01106101 0.99977087 181.62569917 
    69172 Axis 0.51247229 0.85140226 0.11174234 
    69173 Axis point 7675.61342484 0.00000000 -1922.49036663 
    69174 Rotation angle (degrees) 1.23427829 
    69175 Shift along axis 370.49441986 
    69176  
    69177 
    69178 > view matrix models
    69179 > #90,0.99983,-0.0023058,0.018353,248.02,0.0025082,0.99994,-0.011017,262.05,-0.018326,0.011061,0.99977,185.52
    69180 
    69181 > view matrix models
    69182 > #90,0.99983,-0.0023058,0.018353,253.83,0.0025082,0.99994,-0.011017,271.25,-0.018326,0.011061,0.99977,188.02
    69183 
    69184 > ui mousemode right "rotate selected models"
    69185 
    69186 > view matrix models
    69187 > #90,0.99448,0.10449,0.0096588,228.95,-0.10438,0.99447,-0.011667,302.12,-0.010824,0.010595,0.99989,186.06
    69188 
    69189 > ui mousemode right "translate selected models"
    69190 
    69191 > view matrix models
    69192 > #90,0.99448,0.10449,0.0096588,229.04,-0.10438,0.99447,-0.011667,285.58,-0.010824,0.010595,0.99989,187.22
    69193 
    69194 > fitmap #90 inMap #78
    69195 
    69196 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    69197 correlation = 0.6839, correlation about mean = 0.321, overlap = 935.3 
    69198 steps = 64, shift = 13.7, angle = 4.51 degrees 
    69199  
    69200 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    69201 coordinates: 
    69202 Matrix rotation and translation 
    69203 0.98351554 0.18082356 0.00011815 217.33566048 
    69204 -0.18082356 0.98351555 0.00001166 316.52533809 
    69205 -0.00011410 -0.00003283 0.99999999 179.33555985 
    69206 Axis -0.00012301 0.00064219 -0.99999979 
    69207 Axis point 1845.32525184 -1033.57351932 0.00000000 
    69208 Rotation angle (degrees) 10.41773572 
    69209 Shift along axis -179.15898502 
    69210  
    69211 
    69212 > fitmap #90 inMap #78
    69213 
    69214 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    69215 correlation = 0.6836, correlation about mean = 0.3202, overlap = 934.5 
    69216 steps = 28, shift = 0.134, angle = 0.000421 degrees 
    69217  
    69218 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    69219 coordinates: 
    69220 Matrix rotation and translation 
    69221 0.98351572 0.18082259 0.00011753 217.33678736 
    69222 -0.18082259 0.98351573 0.00000441 316.52723110 
    69223 -0.00011479 -0.00002559 0.99999999 179.19963162 
    69224 Axis -0.00008294 0.00064239 -0.99999979 
    69225 Axis point 1845.34897778 -1033.62473418 0.00000000 
    69226 Rotation angle (degrees) 10.41767902 
    69227 Shift along axis -179.01428601 
    69228  
    69229 
    69230 > fitmap #90 inMap #78
    69231 
    69232 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    69233 correlation = 0.6839, correlation about mean = 0.3209, overlap = 935.1 
    69234 steps = 28, shift = 0.105, angle = 0.00708 degrees 
    69235  
    69236 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    69237 coordinates: 
    69238 Matrix rotation and translation 
    69239 0.98349340 0.18094397 0.00011842 217.30906338 
    69240 -0.18094397 0.98349341 0.00001137 316.56441860 
    69241 -0.00011441 -0.00003261 0.99999999 179.30672010 
    69242 Axis -0.00012152 0.00064339 -0.99999979 
    69243 Axis point 1844.35230864 -1032.60313161 0.00000000 
    69244 Rotation angle (degrees) 10.42475041 
    69245 Shift along axis -179.12941598 
    69246  
    69247 
    69248 > fitmap #90 inMap #78
    69249 
    69250 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    69251 correlation = 0.6839, correlation about mean = 0.3209, overlap = 935.2 
    69252 steps = 24, shift = 0.00918, angle = 0.00599 degrees 
    69253  
    69254 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    69255 coordinates: 
    69256 Matrix rotation and translation 
    69257 0.98351231 0.18084116 0.00011826 217.33198706 
    69258 -0.18084116 0.98351232 0.00001196 316.53064101 
    69259 -0.00011415 -0.00003315 0.99999999 179.31597535 
    69260 Axis -0.00012470 0.00064260 -0.99999979 
    69261 Axis point 1845.18083989 -1033.43111010 0.00000000 
    69262 Rotation angle (degrees) 10.41876093 
    69263 Shift along axis -179.13963772 
    69264  
    69265 
    69266 > fitmap #90 inMap #78
    69267 
    69268 Fit map C17-FlgY_New.mrc in map E-ring.mrc gaussian using 167766 points 
    69269 correlation = 0.6839, correlation about mean = 0.3209, overlap = 935.2 
    69270 steps = 24, shift = 0.000454, angle = 0.000298 degrees 
    69271  
    69272 Position of C17-FlgY_New.mrc (#90) relative to E-ring.mrc gaussian (#78)
    69273 coordinates: 
    69274 Matrix rotation and translation 
    69275 0.98351325 0.18083604 0.00011821 217.33313816 
    69276 -0.18083604 0.98351326 0.00001201 316.52893273 
    69277 -0.00011409 -0.00003319 0.99999999 179.31642449 
    69278 Axis -0.00012498 0.00064231 -0.99999979 
    69279 Axis point 1845.22172311 -1033.47232911 0.00000000 
    69280 Rotation angle (degrees) 10.41846272 
    69281 Shift along axis -179.14023835 
    69282  
    69283 
    69284 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69285 > Compositions/Resegment_for-C17_FlgY/MS-ring_New.mrc"
    69286 
    69287 Opened MS-ring_New.mrc as #91, grid size 256,256,256, pixel 2.14, shown at
    69288 level 0.0165, step 1, values float32 
    69289 
    69290 > select subtract #90
    69291 
    69292 Nothing selected 
    69293 
    69294 > select add #91
    69295 
    69296 2 models selected 
    69297 
    69298 > view matrix models #91,1,0,0,291.47,0,1,0,121.38,0,0,1,153.39
    69299 
    69300 > view matrix models #91,1,0,0,259.76,0,1,0,253.65,0,0,1,124.48
    69301 
    69302 > view matrix models #91,1,0,0,266.47,0,1,0,253.28,0,0,1,170.43
    69303 
    69304 > view matrix models #91,1,0,0,260.49,0,1,0,263.72,0,0,1,170.63
    69305 
    69306 > fitmap #91 inMap #76
    69307 
    69308 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    69309 correlation = 0.7299, correlation about mean = 0.3966, overlap = 644.1 
    69310 steps = 56, shift = 6.57, angle = 0.63 degrees 
    69311  
    69312 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    69313 Matrix rotation and translation 
    69314 0.99993954 -0.01099523 -0.00014578 265.54423379 
    69315 0.01099524 0.99993955 0.00001435 259.52130179 
    69316 0.00014562 -0.00001595 0.99999999 176.74014177 
    69317 Axis -0.00137748 -0.01324995 0.99991127 
    69318 Axis point -23677.83582371 24302.71072857 0.00000000 
    69319 Rotation angle (degrees) 0.63004917 
    69320 Shift along axis 172.92003226 
    69321  
    69322 
    69323 > fitmap #91 inMap #76
    69324 
    69325 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    69326 correlation = 0.7298, correlation about mean = 0.3962, overlap = 644.3 
    69327 steps = 40, shift = 0.0436, angle = 0.404 degrees 
    69328  
    69329 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    69330 Matrix rotation and translation 
    69331 0.99983748 -0.01802647 0.00025465 267.36720617 
    69332 0.01802647 0.99983751 0.00001754 257.63185173 
    69333 -0.00025492 -0.00001295 0.99999997 176.88955347 
    69334 Axis -0.00084577 0.01413266 0.99989977 
    69335 Axis point -14015.61177085 14966.74136379 0.00000000 
    69336 Rotation angle (degrees) 1.03300013 
    69337 Shift along axis 180.28671713 
    69338  
    69339 
    69340 > fitmap #91 inMap #76
    69341 
    69342 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    69343 correlation = 0.7297, correlation about mean = 0.3958, overlap = 644.7 
    69344 steps = 48, shift = 0.064, angle = 0.0699 degrees 
    69345  
    69346 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    69347 Matrix rotation and translation 
    69348 0.99981486 -0.01924111 0.00016948 267.72835743 
    69349 0.01924110 0.99981487 0.00010263 257.27485766 
    69350 -0.00017142 -0.00009935 0.99999998 176.95402408 
    69351 Axis -0.00524842 0.00885831 0.99994699 
    69352 Axis point -13153.68310891 14089.46165095 0.00000000 
    69353 Rotation angle (degrees) 1.10256055 
    69354 Shift along axis 177.81851213 
    69355  
    69356 
    69357 > fitmap #91 inMap #76
    69358 
    69359 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    69360 correlation = 0.7298, correlation about mean = 0.3963, overlap = 644.2 
    69361 steps = 48, shift = 0.0759, angle = 0.0477 degrees 
    69362  
    69363 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    69364 Matrix rotation and translation 
    69365 0.99979850 -0.02007278 0.00019300 267.95352720 
    69366 0.02007277 0.99979852 0.00008478 257.05746254 
    69367 -0.00019466 -0.00008089 0.99999998 176.87940534 
    69368 Axis -0.00412629 0.00965567 0.99994487 
    69369 Axis point -12584.90928667 13512.07043080 0.00000000 
    69370 Rotation angle (degrees) 1.15022591 
    69371 Shift along axis 178.24606312 
    69372  
    69373 
    69374 > fitmap #91 inMap #76
    69375 
    69376 Fit map MS-ring_New.mrc in map MS-ring.mrc using 167703 points 
    69377 correlation = 0.7297, correlation about mean = 0.3959, overlap = 644.6 
    69378 steps = 40, shift = 0.0654, angle = 0.0573 degrees 
    69379  
    69380 Position of MS-ring_New.mrc (#91) relative to MS-ring.mrc (#76) coordinates: 
    69381 Matrix rotation and translation 
    69382 0.99981759 -0.01909930 -0.00003711 267.75321626 
    69383 0.01909930 0.99981759 0.00007701 257.32313906 
    69384 0.00003563 -0.00007771 1.00000000 176.88069568 
    69385 Axis -0.00405033 -0.00190407 0.99998998 
    69386 Axis point -13354.92044279 14183.73056555 0.00000000 
    69387 Rotation angle (degrees) 1.09438682 
    69388 Shift along axis 175.30447343 
    69389  
    69390 
    69391 > hide #!76 models
    69392 
    69393 > show #!76 models
    69394 
    69395 > select subtract #91
    69396 
    69397 Nothing selected 
    69398 
    69399 > hide #!91 models
    69400 
    69401 > show #!91 models
    69402 
    69403 > hide #!76 models
    69404 
    69405 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69406 > Compositions/Single_Cage_unit.mrc"
    69407 
    69408 Opened Single_Cage_unit.mrc as #92, grid size 200,200,200, pixel 2.14, shown
    69409 at level 0.00107, step 1, values float32 
    69410 
    69411 > hide #!78 models
    69412 
    69413 > select add #92
    69414 
    69415 2 models selected 
    69416 
    69417 > view matrix models #92,1,0,0,704.7,0,1,0,201.74,0,0,1,279.53
    69418 
    69419 > volume #92 level 0.001585
    69420 
    69421 > surface dust #92 size 21.4
    69422 
    69423 > view matrix models #92,1,0,0,603.05,0,1,0,250.24,0,0,1,261.5
    69424 
    69425 > view matrix models #92,1,0,0,598.33,0,1,0,250.84,0,0,1,244.9
    69426 
    69427 > view matrix models #92,1,0,0,575.39,0,1,0,253.1,0,0,1,244.59
    69428 
    69429 > fitmap #92 inMap #73
    69430 
    69431 Fit map Single_Cage_unit.mrc in map Cage-Mono-Good.mrc copy using 34592 points 
    69432 correlation = 0.894, correlation about mean = 0.8133, overlap = 137.7 
    69433 steps = 204, shift = 16.6, angle = 11.3 degrees 
    69434  
    69435 Position of Single_Cage_unit.mrc (#92) relative to Cage-Mono-Good.mrc copy
    69436 (#73) coordinates: 
    69437 Matrix rotation and translation 
    69438 0.85084055 -0.52520357 -0.01521737 688.24289033 
    69439 0.52349429 0.84984002 -0.06103828 395.07505258 
    69440 0.04498985 0.04396764 0.99801942 212.17994558 
    69441 Axis 0.09946944 -0.05703277 0.99340480 
    69442 Axis point -389.02391770 1372.29633513 0.00000000 
    69443 Rotation angle (degrees) 31.85895864 
    69444 Shift along axis 256.70748721 
    69445  
    69446 
    69447 > fitmap #92 inMap #73
    69448 
    69449 Fit map Single_Cage_unit.mrc in map Cage-Mono-Good.mrc copy using 34592 points 
    69450 correlation = 0.8937, correlation about mean = 0.8129, overlap = 137.7 
    69451 steps = 44, shift = 0.14, angle = 0.132 degrees 
    69452  
    69453 Position of Single_Cage_unit.mrc (#92) relative to Cage-Mono-Good.mrc copy
    69454 (#73) coordinates: 
    69455 Matrix rotation and translation 
    69456 0.85111163 -0.52478264 -0.01456634 687.93682375 
    69457 0.52300606 0.84998400 -0.06318116 395.78421808 
    69458 0.04553753 0.04615593 0.99789577 211.64041367 
    69459 Axis 0.10361828 -0.05696018 0.99298479 
    69460 Axis point -391.71924113 1370.91624424 0.00000000 
    69461 Rotation angle (degrees) 31.84313889 
    69462 Shift along axis 258.89460578 
    69463  
    69464 
    69465 > hide #!73 models
    69466 
    69467 > hide #!84 models
    69468 
    69469 > select clear
    69470 
    69471 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69472 > Compositions/Single_MotBpg_unit.mrc"
    69473 
    69474 Opened Single_MotBpg_unit.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    69475 at level 0.000906, step 1, values float32 
    69476 
    69477 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69478 > Compositions/Single_Cage_unit.mrc"
    69479 
    69480 Opened Single_Cage_unit.mrc as #94, grid size 200,200,200, pixel 2.14, shown
    69481 at level 0.00107, step 1, values float32 
    69482 
    69483 > select add #93
    69484 
    69485 2 models selected 
    69486 
    69487 > select add #94
    69488 
    69489 4 models selected 
    69490 
    69491 > view matrix models
    69492 > #93,1,0,0,423.77,0,1,0,326.57,0,0,1,-198.88,#94,1,0,0,423.77,0,1,0,326.57,0,0,1,-198.88
    69493 
    69494 > view matrix models
    69495 > #93,1,0,0,553.22,0,1,0,257.53,0,0,1,-173.52,#94,1,0,0,553.22,0,1,0,257.53,0,0,1,-173.52
    69496 
    69497 > view matrix models
    69498 > #93,1,0,0,633.8,0,1,0,242.26,0,0,1,163.41,#94,1,0,0,633.8,0,1,0,242.26,0,0,1,163.41
    69499 
    69500 > view matrix models
    69501 > #93,1,0,0,584.51,0,1,0,253.75,0,0,1,164.38,#94,1,0,0,584.51,0,1,0,253.75,0,0,1,164.38
    69502 
    69503 > view matrix models
    69504 > #93,1,0,0,584.09,0,1,0,250.32,0,0,1,244.11,#94,1,0,0,584.09,0,1,0,250.32,0,0,1,244.11
    69505 
    69506 > view matrix models
    69507 > #93,1,0,0,568.99,0,1,0,264.34,0,0,1,246.68,#94,1,0,0,568.99,0,1,0,264.34,0,0,1,246.68
    69508 
    69509 > close #94
    69510 
    69511 > surface dust #93 size 21.4
    69512 
    69513 > fitmap #93 inMap #81
    69514 
    69515 Fit map Single_MotBpg_unit.mrc in map MotB.mrc using 79697 points 
    69516 correlation = 0.6163, correlation about mean = 0.7395, overlap = 76.2 
    69517 steps = 1036, shift = 18.9, angle = 15.8 degrees 
    69518  
    69519 Position of Single_MotBpg_unit.mrc (#93) relative to MotB.mrc (#81)
    69520 coordinates: 
    69521 Matrix rotation and translation 
    69522 0.96291147 0.21432700 0.16390679 496.18471925 
    69523 -0.21988562 0.97538880 0.01633999 323.01791718 
    69524 -0.15637075 -0.05177472 0.98634049 282.69998534 
    69525 Axis -0.12524856 0.58892269 -0.79842524 
    69526 Axis point 1945.55949190 -1921.35819287 0.00000000 
    69527 Rotation angle (degrees) 15.77843975 
    69528 Shift along axis -97.62864004 
    69529  
    69530 
    69531 > fitmap #93 inMap #81
    69532 
    69533 Fit map Single_MotBpg_unit.mrc in map MotB.mrc using 79697 points 
    69534 correlation = 0.6164, correlation about mean = 0.7397, overlap = 76.2 
    69535 steps = 64, shift = 0.179, angle = 0.0698 degrees 
    69536  
    69537 Position of Single_MotBpg_unit.mrc (#93) relative to MotB.mrc (#81)
    69538 coordinates: 
    69539 Matrix rotation and translation 
    69540 0.96261273 0.21530646 0.16437718 496.05703745 
    69541 -0.22080365 0.97519165 0.01571595 323.41930659 
    69542 -0.15691551 -0.05142346 0.98627235 282.85027814 
    69543 Axis -0.12300460 0.58863307 -0.79898747 
    69544 Axis point 1937.21793975 -1912.35827810 0.00000000 
    69545 Rotation angle (degrees) 15.83775503 
    69546 Shift along axis -96.63582434 
    69547  
    69548 
    69549 > hide #!81 models
    69550 
    69551 > select clear
    69552 
    69553 > show #!85 models
    69554 
    69555 > save "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69556 > Compositions/Building_Composition.cxs" includeMaps true
    69557 
    69558 ——— End of log from Tue Sep 9 10:34:35 2025 ———
    69559 
    69560 opened ChimeraX session 
    69561 
    69562 > hide #!58-82 models
    69563 
    69564 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69565 > Compositions/Resegment-PflABCD/1unit_PflABCD.mrc"
    69566 
    69567 Opened 1unit_PflABCD.mrc as #94, grid size 200,200,200, pixel 2.14, shown at
    69568 level 0.0254, step 1, values float32 
    69569 
    69570 > volume #94 level 0.006399
    69571 
    69572 > show #!73 models
    69573 
    69574 > select add #94
    69575 
    69576 2 models selected 
    69577 
    69578 > view matrix models #94,1,0,0,134.96,0,1,0,267.28,0,0,1,-152.38
    69579 
    69580 > view matrix models #94,1,0,0,616.66,0,1,0,273.81,0,0,1,250.99
    69581 
    69582 > view matrix models #94,1,0,0,614.55,0,1,0,260.12,0,0,1,251.89
    69583 
    69584 > view matrix models #94,1,0,0,563.09,0,1,0,258.63,0,0,1,232.09
    69585 
    69586 > ui mousemode right "rotate selected models"
    69587 
    69588 > view matrix models
    69589 > #94,0.98847,0.15032,0.017943,537.22,-0.15005,0.98855,-0.015814,295.14,-0.020114,0.012939,0.99971,234.24
    69590 
    69591 > ui mousemode right "translate selected models"
    69592 
    69593 > view matrix models
    69594 > #94,0.98847,0.15032,0.017943,545.83,-0.15005,0.98855,-0.015814,312.83,-0.020114,0.012939,0.99971,240.63
    69595 
    69596 > ui tool show "Fit in Map"
    69597 
    69598 > fitmap #94 inMap #73
    69599 
    69600 Fit map 1unit_PflABCD.mrc in map Cage-Mono-Good.mrc copy using 172147 points 
    69601 correlation = 0.3775, correlation about mean = 0.2345, overlap = 170.4 
    69602 steps = 64, shift = 7.13, angle = 1.7 degrees 
    69603  
    69604 Position of 1unit_PflABCD.mrc (#94) relative to Cage-Mono-Good.mrc copy (#73)
    69605 coordinates: 
    69606 Matrix rotation and translation 
    69607 0.84722403 -0.53100503 0.01565581 683.75620450 
    69608 0.53108654 0.84731663 -0.00127003 378.56488217 
    69609 -0.01259103 0.00939059 0.99987663 237.53110681 
    69610 Axis 0.01003334 0.02658474 0.99959621 
    69611 Axis point -305.96006063 1370.88620298 0.00000000 
    69612 Rotation angle (degrees) 32.09064827 
    69613 Shift along axis 254.35960048 
    69614  
    69615 
    69616 > fitmap #94 inMap #73
    69617 
    69618 Fit map 1unit_PflABCD.mrc in map Cage-Mono-Good.mrc copy using 172147 points 
    69619 correlation = 0.3775, correlation about mean = 0.2345, overlap = 170.4 
    69620 steps = 40, shift = 0.0474, angle = 0.0132 degrees 
    69621  
    69622 Position of 1unit_PflABCD.mrc (#94) relative to Cage-Mono-Good.mrc copy (#73)
    69623 coordinates: 
    69624 Matrix rotation and translation 
    69625 0.84715231 -0.53111398 0.01584006 683.73927411 
    69626 0.53119663 0.84724769 -0.00122224 378.49374197 
    69627 -0.01277131 0.00944961 0.99987379 237.58259702 
    69628 Axis 0.01004173 0.02692202 0.99958710 
    69629 Axis point -305.53002615 1370.48324286 0.00000000 
    69630 Rotation angle (degrees) 32.09838562 
    69631 Shift along axis 254.54024033 
    69632  
    69633 
    69634 > fitmap #94 inMap #73
    69635 
    69636 Fit map 1unit_PflABCD.mrc in map Cage-Mono-Good.mrc copy using 172147 points 
    69637 correlation = 0.3775, correlation about mean = 0.2345, overlap = 170.4 
    69638 steps = 44, shift = 0.0335, angle = 0.016 degrees 
    69639  
    69640 Position of 1unit_PflABCD.mrc (#94) relative to Cage-Mono-Good.mrc copy (#73)
    69641 coordinates: 
    69642 Matrix rotation and translation 
    69643 0.84703176 -0.53130938 0.01573358 683.84612052 
    69644 0.53138952 0.84712689 -0.00110162 378.40957007 
    69645 -0.01274304 0.00929377 0.99987561 237.60613942 
    69646 Axis 0.00977809 0.02678562 0.99959338 
    69647 Axis point -305.09112739 1370.25341209 0.00000000 
    69648 Rotation angle (degrees) 32.11129691 
    69649 Shift along axis 254.33216755 
    69650  
    69651 
    69652 > close #93
    69653 
    69654 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69655 > Compositions/Resegment-PflABCD/1xMotBpg-09092025.mrc"
    69656 
    69657 Opened 1xMotBpg-09092025.mrc as #93, grid size 200,200,200, pixel 2.14, shown
    69658 at level 0.00231, step 1, values float32 
    69659 
    69660 > select subtract #94
    69661 
    69662 Nothing selected 
    69663 
    69664 > select add #93
    69665 
    69666 2 models selected 
    69667 
    69668 > view matrix models #93,1,0,0,321.52,0,1,0,-29.634,0,0,1,-6.3464
    69669 
    69670 > view matrix models #93,1,0,0,590.01,0,1,0,120.49,0,0,1,62.951
    69671 
    69672 > hide #!85 models
    69673 
    69674 > view matrix models #93,1,0,0,612.95,0,1,0,203.95,0,0,1,215.29
    69675 
    69676 > view matrix models #93,1,0,0,562.32,0,1,0,257.83,0,0,1,248.36
    69677 
    69678 > view matrix models #93,1,0,0,563.74,0,1,0,271.47,0,0,1,236.73
    69679 
    69680 > fitmap #93 inMap #94
    69681 
    69682 Fit map 1xMotBpg-09092025.mrc in map 1unit_PflABCD.mrc using 77865 points 
    69683 correlation = 0.9993, correlation about mean = 0.9993, overlap = 14.25 
    69684 steps = 188, shift = 17, angle = 10.3 degrees 
    69685  
    69686 Position of 1xMotBpg-09092025.mrc (#93) relative to 1unit_PflABCD.mrc (#94)
    69687 coordinates: 
    69688 Matrix rotation and translation 
    69689 0.99999961 -0.00039220 0.00078983 0.04468720 
    69690 0.00039242 0.99999989 -0.00027317 0.02089191 
    69691 -0.00078972 0.00027348 0.99999965 0.02286352 
    69692 Axis 0.29605513 0.85544384 0.42493199 
    69693 Axis point 7.00681634 0.00000000 -41.27533441 
    69694 Rotation angle (degrees) 0.05289726 
    69695 Shift along axis 0.04081717 
    69696  
    69697 
    69698 > surface dust #93 size 21.4
    69699 
    69700 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    69701 > includeMaps true
    69702 
    69703 > select subtract #93
    69704 
    69705 Nothing selected 
    69706 
    69707 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69708 > Compositions/Resegment-PflABCD/1xPflD.mrc"
    69709 
    69710 Opened 1xPflD.mrc as #95, grid size 200,200,200, pixel 2.14, shown at level
    69711 0.00228, step 1, values float32 
    69712 
    69713 > select add #94
    69714 
    69715 2 models selected 
    69716 
    69717 > select subtract #94
    69718 
    69719 Nothing selected 
    69720 
    69721 > hide #!86 models
    69722 
    69723 > hide #!73 models
    69724 
    69725 > select add #95
    69726 
    69727 2 models selected 
    69728 
    69729 > view matrix models #95,1,0,0,360.08,0,1,0,557.3,0,0,1,108.22
    69730 
    69731 > view matrix models #95,1,0,0,511.15,0,1,0,235.1,0,0,1,234
    69732 
    69733 > view matrix models #95,1,0,0,548.26,0,1,0,280.14,0,0,1,227.15
    69734 
    69735 > view matrix models #95,1,0,0,568.63,0,1,0,254.58,0,0,1,233.42
    69736 
    69737 > view matrix models #95,1,0,0,573.08,0,1,0,261.87,0,0,1,235.11
    69738 
    69739 > fitmap #95 inMap #94
    69740 
    69741 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 78846 points 
    69742 correlation = 0.8209, correlation about mean = 0.8407, overlap = 5.624 
    69743 steps = 2000, shift = 238, angle = 106 degrees 
    69744  
    69745 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    69746 Matrix rotation and translation 
    69747 0.44871392 -0.03658823 -0.89292616 442.77007253 
    69748 -0.88403945 0.12815784 -0.44949952 586.83714695 
    69749 0.13088188 0.99107864 0.02516077 54.01643407 
    69750 Axis 0.73498676 -0.52234955 -0.43237184 
    69751 Axis point 0.00000000 421.79210823 482.25137983 
    69752 Rotation angle (degrees) 101.47753696 
    69753 Shift along axis -4.45916358 
    69754  
    69755 
    69756 > fitmap #95 inMap #94
    69757 
    69758 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 78846 points 
    69759 correlation = 0.8598, correlation about mean = 0.8825, overlap = 5.862 
    69760 steps = 2000, shift = 181, angle = 78.1 degrees 
    69761  
    69762 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    69763 Matrix rotation and translation 
    69764 -0.02391511 -0.78326783 -0.62122426 657.29982054 
    69765 -0.79318482 -0.36337187 0.48869083 375.16815684 
    69766 -0.60851123 0.50443275 -0.61258607 573.31264207 
    69767 Axis 0.69858872 -0.56417411 -0.44009246 
    69768 Axis point 0.00000000 450.69566568 495.19894104 
    69769 Rotation angle (degrees) 179.35443813 
    69770 Shift along axis -4.78849562 
    69771  
    69772 
    69773 > volume #95 level 0.002032
    69774 
    69775 > ui mousemode right "rotate selected models"
    69776 
    69777 > view matrix models
    69778 > #95,0.98255,0.0020586,0.186,681.77,0.042772,-0.97564,-0.21515,727.54,0.18102,0.21935,-0.95871,774.82
    69779 
    69780 > view matrix models
    69781 > #95,0.93452,-0.2697,0.23225,740.01,-0.25906,-0.96288,-0.075776,759.41,0.24407,0.010648,-0.9697,808.17
    69782 
    69783 > view matrix models
    69784 > #95,0.95575,-0.2707,0.11518,760.63,-0.2702,-0.96259,-0.020269,749.9,0.11635,-0.011749,-0.99314,845.12
    69785 
    69786 > ui mousemode right "translate selected models"
    69787 
    69788 > view matrix models
    69789 > #95,0.95575,-0.2707,0.11518,635.07,-0.2702,-0.96259,-0.020269,809.33,0.11635,-0.011749,-0.99314,807.67
    69790 
    69791 > view matrix models
    69792 > #95,0.95575,-0.2707,0.11518,636.37,-0.2702,-0.96259,-0.020269,771.31,0.11635,-0.011749,-0.99314,834.5
    69793 
    69794 > view matrix models
    69795 > #95,0.95575,-0.2707,0.11518,627.99,-0.2702,-0.96259,-0.020269,758.59,0.11635,-0.011749,-0.99314,823.54
    69796 
    69797 > view matrix models
    69798 > #95,0.95575,-0.2707,0.11518,609.79,-0.2702,-0.96259,-0.020269,772.68,0.11635,-0.011749,-0.99314,826.49
    69799 
    69800 > fitmap #95 inMap #94
    69801 
    69802 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 114776 points 
    69803 correlation = 0.6933, correlation about mean = 0.7102, overlap = 5.309 
    69804 steps = 2000, shift = 130, angle = 50.4 degrees 
    69805  
    69806 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    69807 Matrix rotation and translation 
    69808 0.52455209 -0.11161180 0.84403075 -102.83118592 
    69809 -0.15504536 -0.98731516 -0.03420095 486.03876715 
    69810 0.83714159 -0.11292287 -0.53520312 260.07931488 
    69811 Axis -0.87301496 0.07639984 -0.48167204 
    69812 Axis point 0.00000000 241.88964464 152.13052619 
    69813 Rotation angle (degrees) 177.41587276 
    69814 Shift along axis 1.63351334 
    69815  
    69816 
    69817 > close #95
    69818 
    69819 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69820 > Compositions/Resegment-PflABCD/1xPflD.mrc"
    69821 
    69822 Opened 1xPflD.mrc as #95, grid size 200,200,200, pixel 2.14, shown at level
    69823 0.00228, step 1, values float32 
    69824 
    69825 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69826 > Compositions/Resegment-PflABCD/1unit_PflABCD.mrc"
    69827 
    69828 Opened 1unit_PflABCD.mrc as #96, grid size 200,200,200, pixel 2.14, shown at
    69829 level 0.0254, step 1, values float32 
    69830 
    69831 > select add #95
    69832 
    69833 2 models selected 
    69834 
    69835 > view matrix models #95,1,0,0,658.55,0,1,0,85.496,0,0,1,168.29
    69836 
    69837 > undo
    69838 
    69839 > select add #96
    69840 
    69841 4 models selected 
    69842 
    69843 > view matrix models
    69844 > #95,1,0,0,626.4,0,1,0,50.751,0,0,1,154.84,#96,1,0,0,626.4,0,1,0,50.751,0,0,1,154.84
    69845 
    69846 > view matrix models
    69847 > #95,1,0,0,592.4,0,1,0,246.58,0,0,1,207.61,#96,1,0,0,592.4,0,1,0,246.58,0,0,1,207.61
    69848 
    69849 > view matrix models
    69850 > #95,1,0,0,591.84,0,1,0,256.22,0,0,1,244.02,#96,1,0,0,591.84,0,1,0,256.22,0,0,1,244.02
    69851 
    69852 > view matrix models
    69853 > #95,1,0,0,575.69,0,1,0,261.67,0,0,1,234.11,#96,1,0,0,575.69,0,1,0,261.67,0,0,1,234.11
    69854 
    69855 > view matrix models
    69856 > #95,1,0,0,575.88,0,1,0,260.53,0,0,1,234.52,#96,1,0,0,575.88,0,1,0,260.53,0,0,1,234.52
    69857 
    69858 > view matrix models
    69859 > #95,1,0,0,575.38,0,1,0,263.66,0,0,1,233.96,#96,1,0,0,575.38,0,1,0,263.66,0,0,1,233.96
    69860 
    69861 > view matrix models
    69862 > #95,1,0,0,575.14,0,1,0,258.24,0,0,1,239.73,#96,1,0,0,575.14,0,1,0,258.24,0,0,1,239.73
    69863 
    69864 > ui mousemode right "rotate selected models"
    69865 
    69866 > view matrix models
    69867 > #95,0.99997,2.0466e-05,0.0077597,573.49,-3.7193e-05,1,0.0021554,257.79,-0.0077596,-0.0021556,0.99997,241.85,#96,0.99997,2.0466e-05,0.0077597,573.49,-3.7193e-05,1,0.0021554,257.79,-0.0077596,-0.0021556,0.99997,241.85
    69868 
    69869 > undo
    69870 
    69871 > view matrix models
    69872 > #95,0.97176,0.23585,-0.0074376,532.52,-0.23555,0.97144,0.028666,308.37,0.013986,-0.026104,0.99956,242.4,#96,0.97176,0.23585,-0.0074376,532.52,-0.23555,0.97144,0.028666,308.37,0.013986,-0.026104,0.99956,242.4
    69873 
    69874 > ui mousemode right "translate selected models"
    69875 
    69876 > view matrix models
    69877 > #95,0.97176,0.23585,-0.0074376,541.01,-0.23555,0.97144,0.028666,323.91,0.013986,-0.026104,0.99956,240.71,#96,0.97176,0.23585,-0.0074376,541.01,-0.23555,0.97144,0.028666,323.91,0.013986,-0.026104,0.99956,240.71
    69878 
    69879 > view matrix models
    69880 > #95,0.97176,0.23585,-0.0074376,541.48,-0.23555,0.97144,0.028666,322.49,0.013986,-0.026104,0.99956,240.86,#96,0.97176,0.23585,-0.0074376,541.48,-0.23555,0.97144,0.028666,322.49,0.013986,-0.026104,0.99956,240.86
    69881 
    69882 > view matrix models
    69883 > #95,0.97176,0.23585,-0.0074376,543.62,-0.23555,0.97144,0.028666,335.39,0.013986,-0.026104,0.99956,239.37,#96,0.97176,0.23585,-0.0074376,543.62,-0.23555,0.97144,0.028666,335.39,0.013986,-0.026104,0.99956,239.37
    69884 
    69885 > view orient
    69886 
    69887 > ui mousemode right "rotate selected models"
    69888 
    69889 > view matrix models
    69890 > #95,0.99866,0.050244,-0.012661,578.52,-0.049891,0.9984,0.026772,290.52,0.013986,-0.026104,0.99956,239.37,#96,0.99866,0.050244,-0.012661,578.52,-0.049891,0.9984,0.026772,290.52,0.013986,-0.026104,0.99956,239.37
    69891 
    69892 > ui mousemode right "translate selected models"
    69893 
    69894 > view matrix models
    69895 > #95,0.99866,0.050244,-0.012661,561.81,-0.049891,0.9984,0.026772,290.83,0.013986,-0.026104,0.99956,239.37,#96,0.99866,0.050244,-0.012661,561.81,-0.049891,0.9984,0.026772,290.83,0.013986,-0.026104,0.99956,239.37
    69896 
    69897 > ui mousemode right "rotate selected models"
    69898 
    69899 > view matrix models
    69900 > #95,0.98842,0.15143,-0.0098752,541.85,-0.15111,0.98812,0.02792,314.32,0.013986,-0.026104,0.99956,239.37,#96,0.98842,0.15143,-0.0098752,541.85,-0.15111,0.98812,0.02792,314.32,0.013986,-0.026104,0.99956,239.37
    69901 
    69902 > ui mousemode right "translate selected models"
    69903 
    69904 > view matrix models
    69905 > #95,0.98842,0.15143,-0.0098752,547.66,-0.15111,0.98812,0.02792,301.69,0.013986,-0.026104,0.99956,239.37,#96,0.98842,0.15143,-0.0098752,547.66,-0.15111,0.98812,0.02792,301.69,0.013986,-0.026104,0.99956,239.37
    69906 
    69907 > fitmap #96 inMap #94
    69908 
    69909 Fit map 1unit_PflABCD.mrc in map 1unit_PflABCD.mrc using 79988 points 
    69910 correlation = 1, correlation about mean = 1, overlap = 160.9 
    69911 steps = 84, shift = 3.24, angle = 2.99 degrees 
    69912  
    69913 Position of 1unit_PflABCD.mrc (#96) relative to 1unit_PflABCD.mrc (#94)
    69914 coordinates: 
    69915 Matrix rotation and translation 
    69916 0.99999999 0.00012179 -0.00002993 -0.00800089 
    69917 -0.00012179 0.99999999 -0.00008588 0.02768822 
    69918 0.00002992 0.00008588 1.00000000 -0.01306696 
    69919 Axis 0.56501331 -0.19686455 -0.80125171 
    69920 Axis point 228.14078409 68.02211020 0.00000000 
    69921 Rotation angle (degrees) 0.00870895 
    69922 Shift along axis 0.00049848 
    69923  
    69924 
    69925 > fitmap #95 inMap #94
    69926 
    69927 Fit map 1xPflD.mrc in map 1unit_PflABCD.mrc using 78846 points 
    69928 correlation = 0.8501, correlation about mean = 0.8718, overlap = 5.79 
    69929 steps = 2000, shift = 294, angle = 167 degrees 
    69930  
    69931 Position of 1xPflD.mrc (#95) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    69932 Matrix rotation and translation 
    69933 -0.04205809 -0.56541269 -0.82373515 678.34340473 
    69934 -0.82611959 -0.44401593 0.34695285 446.71743157 
    69935 -0.56192307 0.69509592 -0.44842404 467.46909136 
    69936 Axis 0.68578189 -0.51572470 -0.51354768 
    69937 Axis point 0.00000000 434.70163018 529.49245281 
    69938 Rotation angle (degrees) 165.29577328 
    69939 Shift along axis -5.25525907 
    69940  
    69941 
    69942 > select subtract #96
    69943 
    69944 2 models selected 
    69945 
    69946 > surface dust #95 size 21.4
    69947 
    69948 > view matrix models
    69949 > #95,0.98842,0.15143,-0.0098752,547.97,-0.15111,0.98812,0.02792,301.11,0.013986,-0.026104,0.99956,236.65
    69950 
    69951 > hide #!95 models
    69952 
    69953 > show #!95 models
    69954 
    69955 > view matrix models
    69956 > #95,0.98842,0.15143,-0.0098752,547.84,-0.15111,0.98812,0.02792,301.06,0.013986,-0.026104,0.99956,237.57
    69957 
    69958 > hide #!95 models
    69959 
    69960 > show #!95 models
    69961 
    69962 > hide #!95 models
    69963 
    69964 > show #!95 models
    69965 
    69966 > ui mousemode right "rotate selected models"
    69967 
    69968 > view matrix models
    69969 > #95,0.98973,0.14292,0.00076463,545.98,-0.14287,0.98949,-0.022312,313.97,-0.0039455,0.021974,0.99975,232.44
    69970 
    69971 > hide #!95 models
    69972 
    69973 > show #!95 models
    69974 
    69975 > hide #!95 models
    69976 
    69977 > show #!95 models
    69978 
    69979 > select subtract #95
    69980 
    69981 Nothing selected 
    69982 
    69983 > close #96
    69984 
    69985 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    69986 > includeMaps true
    69987 
    69988 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    69989 > Compositions/Resegment-PflABCD/1xPflC.mrc"
    69990 
    69991 Opened 1xPflC.mrc as #96, grid size 200,200,200, pixel 2.14, shown at level
    69992 0.00265, step 1, values float32 
    69993 
    69994 > select add #96
    69995 
    69996 2 models selected 
    69997 
    69998 > ui mousemode right "translate selected models"
    69999 
    70000 > view matrix models #96,1,0,0,47.658,0,1,0,167.48,0,0,1,-32.861
    70001 
    70002 > view matrix models #96,1,0,0,398.68,0,1,0,90.654,0,0,1,177.19
    70003 
    70004 > view matrix models #96,1,0,0,401.83,0,1,0,160.82,0,0,1,160.74
    70005 
    70006 > hide #!90 models
    70007 
    70008 > view matrix models #96,1,0,0,592.48,0,1,0,257.09,0,0,1,202.08
    70009 
    70010 > view matrix models #96,1,0,0,565.28,0,1,0,293.67,0,0,1,244.67
    70011 
    70012 > ui mousemode right "rotate selected models"
    70013 
    70014 > view matrix models
    70015 > #96,0.93537,0.34387,-0.082687,523.43,-0.34961,0.93434,-0.069212,396.82,0.053457,0.093647,0.99417,214.59
    70016 
    70017 > view matrix models
    70018 > #96,0.97814,0.19907,0.060063,514.76,-0.19581,0.97904,-0.056063,351.76,-0.069964,0.043077,0.99662,251.11
    70019 
    70020 > undo
    70021 
    70022 > ui mousemode right "translate selected models"
    70023 
    70024 > view matrix models
    70025 > #96,0.93537,0.34387,-0.082687,556.57,-0.34961,0.93434,-0.069212,391.56,0.053457,0.093647,0.99417,208.33
    70026 
    70027 > fitmap #96 inMap #94
    70028 
    70029 Fit map 1xPflC.mrc in map 1unit_PflABCD.mrc using 78535 points 
    70030 correlation = 0.9996, correlation about mean = 0.9994, overlap = 49.99 
    70031 steps = 220, shift = 16.6, angle = 11.8 degrees 
    70032  
    70033 Position of 1xPflC.mrc (#96) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    70034 Matrix rotation and translation 
    70035 0.99999792 0.00180027 0.00095518 -0.61225302 
    70036 -0.00180227 0.99999618 0.00209512 -0.27012088 
    70037 -0.00095141 -0.00209684 0.99999735 0.43871009 
    70038 Axis -0.71695761 0.32608723 -0.61614845 
    70039 Axis point 0.00000000 232.71942073 141.89223067 
    70040 Rotation angle (degrees) 0.16750063 
    70041 Shift along axis 0.08056595 
    70042  
    70043 
    70044 > fitmap #96 inMap #94
    70045 
    70046 Fit map 1xPflC.mrc in map 1unit_PflABCD.mrc using 78535 points 
    70047 correlation = 0.9996, correlation about mean = 0.9994, overlap = 50 
    70048 steps = 44, shift = 0.0391, angle = 0.00304 degrees 
    70049  
    70050 Position of 1xPflC.mrc (#96) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    70051 Matrix rotation and translation 
    70052 0.99999790 0.00179596 0.00098457 -0.61146150 
    70053 -0.00179798 0.99999628 0.00205106 -0.29518315 
    70054 -0.00098088 -0.00205282 0.99999741 0.44410267 
    70055 Axis -0.70776292 0.33896566 -0.61981766 
    70056 Axis point 0.00000000 233.48955235 153.83532488 
    70057 Rotation angle (degrees) 0.16611180 
    70058 Shift along axis 0.05745015 
    70059  
    70060 
    70061 > select subtract #96
    70062 
    70063 Nothing selected 
    70064 
    70065 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    70066 > Compositions/Resegment-PflABCD/Single-MotA-ring.mrc"
    70067 
    70068 Opened Single-MotA-ring.mrc as #97, grid size 200,200,200, pixel 2.14, shown
    70069 at level 0.00252, step 1, values float32 
    70070 
    70071 > select add #97
    70072 
    70073 2 models selected 
    70074 
    70075 > view matrix models #97,1,0,0,559.27,0,1,0,54.882,0,0,1,225.63
    70076 
    70077 > view matrix models #97,1,0,0,550.32,0,1,0,274.63,0,0,1,233.61
    70078 
    70079 > fitmap #97 inMap #94
    70080 
    70081 Fit map Single-MotA-ring.mrc in map 1unit_PflABCD.mrc using 78731 points 
    70082 correlation = 0.9998, correlation about mean = 0.9997, overlap = 12.79 
    70083 steps = 228, shift = 17.3, angle = 10.3 degrees 
    70084  
    70085 Position of Single-MotA-ring.mrc (#97) relative to 1unit_PflABCD.mrc (#94)
    70086 coordinates: 
    70087 Matrix rotation and translation 
    70088 1.00000000 0.00004806 0.00006055 -0.00771370 
    70089 -0.00004807 1.00000000 0.00005679 0.02316086 
    70090 -0.00006055 -0.00005679 1.00000000 0.04060887 
    70091 Axis -0.59202396 0.63123982 -0.50104283 
    70092 Axis point 661.04108577 0.00000000 138.75851289 
    70093 Rotation angle (degrees) 0.00549622 
    70094 Shift along axis -0.00116003 
    70095  
    70096 
    70097 > surface dust #97 size 21.4
    70098 
    70099 > select add #96
    70100 
    70101 4 models selected 
    70102 
    70103 > surface dust #96 size 21.4
    70104 
    70105 > surface dust #97 size 21.4
    70106 
    70107 > select clear
    70108 
    70109 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    70110 > Compositions/1xPflAB_region.mrc"
    70111 
    70112 Opened 1xPflAB_region.mrc as #98, grid size 200,200,200, pixel 2.14, shown at
    70113 level 0.00102, step 1, values float32 
    70114 
    70115 > select add #98
    70116 
    70117 2 models selected 
    70118 
    70119 > view matrix models #98,1,0,0,436.2,0,1,0,351.41,0,0,1,126.63
    70120 
    70121 > view matrix models #98,1,0,0,523.29,0,1,0,319.09,0,0,1,220.28
    70122 
    70123 > ui mousemode right "rotate selected models"
    70124 
    70125 > view matrix models
    70126 > #98,0.87364,0.48391,-0.050772,457.98,-0.48465,0.87471,-0.0024665,449.48,0.043217,0.026762,0.99871,205.66
    70127 
    70128 > view matrix models
    70129 > #98,0.95152,0.29602,-0.08357,488.38,-0.29459,0.95518,0.029281,385.12,0.088492,-0.0032432,0.99607,202.97
    70130 
    70131 > ui mousemode right "translate selected models"
    70132 
    70133 > view matrix models
    70134 > #98,0.95152,0.29602,-0.08357,505.6,-0.29459,0.95518,0.029281,327,0.088492,-0.0032432,0.99607,203.92
    70135 
    70136 > view matrix models
    70137 > #98,0.95152,0.29602,-0.08357,517.91,-0.29459,0.95518,0.029281,320,0.088492,-0.0032432,0.99607,212.98
    70138 
    70139 > view matrix models
    70140 > #98,0.95152,0.29602,-0.08357,534.13,-0.29459,0.95518,0.029281,316.29,0.088492,-0.0032432,0.99607,225.17
    70141 
    70142 > view matrix models
    70143 > #98,0.95152,0.29602,-0.08357,530.43,-0.29459,0.95518,0.029281,315.24,0.088492,-0.0032432,0.99607,227.07
    70144 
    70145 > fitmap #98 inMap #94
    70146 
    70147 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    70148 correlation = 0.5966, correlation about mean = 0.4565, overlap = 29.71 
    70149 steps = 664, shift = 32.6, angle = 44.6 degrees 
    70150  
    70151 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    70152 coordinates: 
    70153 Matrix rotation and translation 
    70154 0.95592663 0.29045115 0.04292326 -42.30141462 
    70155 -0.23646452 0.67495658 0.69894073 -91.79425743 
    70156 0.17403680 -0.67828589 0.71389036 192.50582055 
    70157 Axis -0.93030712 -0.08856630 -0.35592791 
    70158 Axis point 0.00000000 180.78761442 218.07439158 
    70159 Rotation angle (degrees) 47.74845368 
    70160 Shift along axis -21.03501029 
    70161  
    70162 
    70163 > fitmap #98 inMap #94
    70164 
    70165 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    70166 correlation = 0.5966, correlation about mean = 0.4565, overlap = 29.71 
    70167 steps = 64, shift = 0.00184, angle = 0.00355 degrees 
    70168  
    70169 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    70170 coordinates: 
    70171 Matrix rotation and translation 
    70172 0.95592836 0.29044793 0.04290646 -42.29555535 
    70173 -0.23644047 0.67492038 0.69898382 -91.80116532 
    70174 0.17405995 -0.67832328 0.71384918 192.51794182 
    70175 Axis -0.93031831 -0.08858917 -0.35589297 
    70176 Axis point 0.00000000 180.78184164 218.07817843 
    70177 Rotation angle (degrees) 47.75138103 
    70178 Shift along axis -21.03486420 
    70179  
    70180 
    70181 > surface dust #98 size 21.4
    70182 
    70183 > hide #!91 models
    70184 
    70185 > hide #!92 models
    70186 
    70187 > hide #!93 models
    70188 
    70189 > hide #!94 models
    70190 
    70191 > show #!94 models
    70192 
    70193 > hide #!95 models
    70194 
    70195 > hide #!96 models
    70196 
    70197 > hide #!97 models
    70198 
    70199 > ui mousemode right "rotate selected models"
    70200 
    70201 > view matrix models
    70202 > #98,0.80298,0.1547,0.57559,457.97,-0.051244,0.98007,-0.19192,297.88,-0.59381,0.12461,0.7949,371.39
    70203 
    70204 > view matrix models
    70205 > #98,0.77375,0.41156,0.48159,426.82,-0.30633,0.9085,-0.28423,388,-0.55451,0.072402,0.82902,367.4
    70206 
    70207 > view matrix models
    70208 > #98,0.72563,0.66601,0.17291,453.53,-0.61766,0.74121,-0.26288,483.34,-0.30324,0.083957,0.94921,285.18
    70209 
    70210 > ui mousemode right "translate selected models"
    70211 
    70212 > view matrix models
    70213 > #98,0.72563,0.66601,0.17291,436.66,-0.61766,0.74121,-0.26288,498.09,-0.30324,0.083957,0.94921,281.71
    70214 
    70215 > ui mousemode right "rotate selected models"
    70216 
    70217 > view matrix models
    70218 > #98,0.93121,0.34943,-0.10363,539.57,-0.36429,0.90125,-0.2346,403.49,0.011419,0.25621,0.96655,174.89
    70219 
    70220 > ui mousemode right "translate selected models"
    70221 
    70222 > view matrix models
    70223 > #98,0.93121,0.34943,-0.10363,549.55,-0.36429,0.90125,-0.2346,419.89,0.011419,0.25621,0.96655,195.07
    70224 
    70225 > view matrix models
    70226 > #98,0.93121,0.34943,-0.10363,540.04,-0.36429,0.90125,-0.2346,424.51,0.011419,0.25621,0.96655,196.08
    70227 
    70228 > fitmap #98 inMap #94
    70229 
    70230 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    70231 correlation = 0.8837, correlation about mean = 0.8256, overlap = 43.6 
    70232 steps = 436, shift = 9.7, angle = 18.1 degrees 
    70233  
    70234 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    70235 coordinates: 
    70236 Matrix rotation and translation 
    70237 0.99999726 0.00117357 0.00202402 -0.58103994 
    70238 -0.00117078 0.99999836 -0.00138321 0.48246498 
    70239 -0.00202564 0.00138083 0.99999699 0.27982521 
    70240 Axis 0.50859335 0.74515350 -0.43136882 
    70241 Axis point 125.65966211 0.00000000 272.99145858 
    70242 Rotation angle (degrees) 0.15569221 
    70243 Shift along axis -0.05671046 
    70244  
    70245 
    70246 > fitmap #98 inMap #94
    70247 
    70248 Fit map 1xPflAB_region.mrc in map 1unit_PflABCD.mrc using 76608 points 
    70249 correlation = 0.8837, correlation about mean = 0.8255, overlap = 43.59 
    70250 steps = 48, shift = 0.0196, angle = 0.00692 degrees 
    70251  
    70252 Position of 1xPflAB_region.mrc (#98) relative to 1unit_PflABCD.mrc (#94)
    70253 coordinates: 
    70254 Matrix rotation and translation 
    70255 0.99999727 0.00115967 0.00202834 -0.57775370 
    70256 -0.00115711 0.99999853 -0.00126335 0.43180142 
    70257 -0.00202980 0.00126100 0.99999714 0.30530944 
    70258 Axis 0.47529436 0.76407878 -0.43620969 
    70259 Axis point 133.30782771 0.00000000 266.77772187 
    70260 Rotation angle (degrees) 0.15215337 
    70261 Shift along axis -0.07785171 
    70262  
    70263 
    70264 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    70265 > includeMaps true
    70266 
    70267 ——— End of log from Tue Sep 9 11:45:50 2025 ———
    70268 
    70269 opened ChimeraX session 
    70270 
    70271 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    70272 > Compositions/Resegment-PflABCD/1xFliL.mrc"
    70273 
    70274 Opened 1xFliL.mrc as #99, grid size 200,200,200, pixel 2.14, shown at level
    70275 0.00238, step 1, values float32 
    70276 
    70277 > select add #99
    70278 
    70279 2 models selected 
    70280 
    70281 > view matrix models #99,1,0,0,412.15,0,1,0,194.7,0,0,1,-151.37
    70282 
    70283 > view matrix models #99,1,0,0,540.78,0,1,0,141.7,0,0,1,232.01
    70284 
    70285 > view matrix models #99,1,0,0,549.52,0,1,0,285.14,0,0,1,213.45
    70286 
    70287 > view matrix models #99,1,0,0,567.09,0,1,0,290.51,0,0,1,228.84
    70288 
    70289 > view matrix models #99,1,0,0,572.06,0,1,0,276.29,0,0,1,237.15
    70290 
    70291 > ui tool show "Fit in Map"
    70292 
    70293 > fitmap #99 inMap #94
    70294 
    70295 Fit map 1xFliL.mrc in map 1unit_PflABCD.mrc using 79950 points 
    70296 correlation = 0.8654, correlation about mean = 0.8142, overlap = 14.02 
    70297 steps = 228, shift = 6.94, angle = 10.3 degrees 
    70298  
    70299 Position of 1xFliL.mrc (#99) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    70300 Matrix rotation and translation 
    70301 0.99999941 0.00067094 -0.00085062 -0.10891124 
    70302 -0.00067114 0.99999975 -0.00022852 0.34103581 
    70303 0.00085047 0.00022909 0.99999961 -0.19995192 
    70304 Axis 0.20663599 -0.76813768 -0.60602481 
    70305 Axis point 351.42628630 0.00000000 -88.61247436 
    70306 Rotation angle (degrees) 0.06344247 
    70307 Shift along axis -0.16329161 
    70308  
    70309 
    70310 > fitmap #99 inMap #94
    70311 
    70312 Fit map 1xFliL.mrc in map 1unit_PflABCD.mrc using 79950 points 
    70313 correlation = 0.8654, correlation about mean = 0.8146, overlap = 14 
    70314 steps = 84, shift = 0.04, angle = 0.0091 degrees 
    70315  
    70316 Position of 1xFliL.mrc (#99) relative to 1unit_PflABCD.mrc (#94) coordinates: 
    70317 Matrix rotation and translation 
    70318 0.99999946 0.00066514 -0.00080258 -0.14033314 
    70319 -0.00066545 0.99999971 -0.00037983 0.40263590 
    70320 0.00080232 0.00038036 0.99999961 -0.20619691 
    70321 Axis 0.34257713 -0.72324753 -0.59962815 
    70322 Axis point 418.11929545 0.00000000 -83.09150205 
    70323 Rotation angle (degrees) 0.06357029 
    70324 Shift along axis -0.21563887 
    70325  
    70326 
    70327 > surface dust #99 size 21.4
    70328 
    70329 > show #!95 models
    70330 
    70331 > hide #!94 models
    70332 
    70333 > show #!93 models
    70334 
    70335 > show #!96 models
    70336 
    70337 > show #!97 models
    70338 
    70339 > show #!92 models
    70340 
    70341 > show #!3 models
    70342 
    70343 > hide #!3 models
    70344 
    70345 > volume gaussian #92 sDev 2
    70346 
    70347 Opened Single_Cage_unit.mrc gaussian as #100, grid size 200,200,200, pixel
    70348 2.14, shown at step 1, values float32 
    70349 
    70350 > close #100
    70351 
    70352 > volume gaussian #92 sDev 2.5
    70353 
    70354 Opened Single_Cage_unit.mrc gaussian as #100, grid size 200,200,200, pixel
    70355 2.14, shown at step 1, values float32 
    70356 
    70357 > surface dust #100 size 58.49
    70358 
    70359 > volume #100 level 0.0004746
    70360 
    70361 > select subtract #99
    70362 
    70363 Nothing selected 
    70364 
    70365 > volume gaussian #93 sDev 2.5
    70366 
    70367 Opened 1xMotBpg-09092025.mrc gaussian as #101, grid size 200,200,200, pixel
    70368 2.14, shown at step 1, values float32 
    70369 
    70370 > surface dust #101 size 58.49
    70371 
    70372 > volume #101 level 0.000475
    70373 
    70374 > surface dust #101 size 70
    70375 
    70376 > surface dust #101 size 60
    70377 
    70378 > hide #!95 models
    70379 
    70380 > hide #!96 models
    70381 
    70382 > hide #!97 models
    70383 
    70384 > hide #!98 models
    70385 
    70386 > hide #!99 models
    70387 
    70388 > hide #!100 models
    70389 
    70390 > ui tool show "Map Eraser"
    70391 
    70392 > close #101
    70393 
    70394 > volume gaussian #93 sDev 2
    70395 
    70396 Opened 1xMotBpg-09092025.mrc gaussian as #101, grid size 200,200,200, pixel
    70397 2.14, shown at step 1, values float32 
    70398 
    70399 > volume erase #101 center 829.76,424.5,513.44 radius 61.846 outside true
    70400 
    70401 > volume erase #101 center 808.45,419.45,496.48 radius 61.846 outside true
    70402 
    70403 > volume erase #101 center 728.23,397.72,499.08 radius 61.846
    70404 
    70405 > volume erase #101 center 764.6,385.97,450.86 radius 61.846
    70406 
    70407 > volume erase #101 center 841.25,386.46,417.05 radius 61.846
    70408 
    70409 > volume erase #101 center 873.63,489.27,496.79 radius 61.846
    70410 
    70411 > close #100
    70412 
    70413 > hide #!101 models
    70414 
    70415 > volume gaussian #92 sDev 2
    70416 
    70417 Opened Single_Cage_unit.mrc gaussian as #100, grid size 200,200,200, pixel
    70418 2.14, shown at step 1, values float32 
    70419 
    70420 > volume erase #100 center 895.5,406.58,415.67 radius 139.1 outside true
    70421 
    70422 > volume erase #100 center 968.62,589.51,395.09 radius 139.1
    70423 
    70424 > volume erase #100 center 772.1,254.71,380.84 radius 139.1
    70425 
    70426 > volume erase #100 center 1062.1,403.04,504.48 radius 139.1
    70427 
    70428 > volume erase #100 center 1010.4,257.36,382.45 radius 139.1
    70429 
    70430 > volume erase #100 center 1041.3,320.67,445.97 radius 139.1
    70431 
    70432 > volume erase #100 center 710.6,460.67,350.75 radius 139.1
    70433 
    70434 > volume erase #100 center 866.66,228.8,548.32 radius 139.1
    70435 
    70436 > volume #100 level 0.0005759
    70437 
    70438 > surface dust #100 size 70
    70439 
    70440 > show #!101 models
    70441 
    70442 > volume gaussian #95 sDev 2
    70443 
    70444 Opened 1xPflD.mrc gaussian as #103, grid size 200,200,200, pixel 2.14, shown
    70445 at step 1, values float32 
    70446 
    70447 > hide #!100 models
    70448 
    70449 > hide #!101 models
    70450 
    70451 > volume erase #103 center 871.21,481.94,542.43 radius 46.652 outside true
    70452 
    70453 > volume erase #103 center 908.86,413.45,538.4 radius 46.652
    70454 
    70455 > volume gaussian #96 sDev 2
    70456 
    70457 Opened 1xPflC.mrc gaussian as #104, grid size 200,200,200, pixel 2.14, shown
    70458 at step 1, values float32 
    70459 
    70460 > hide #!103 models
    70461 
    70462 > show #!103 models
    70463 
    70464 > hide #!103 models
    70465 
    70466 > volume erase #104 center 785.1,444.43,565.63 radius 173.13 outside true
    70467 
    70468 > volume erase #104 center 723.77,506.03,771.26 radius 173.13
    70469 
    70470 > volume erase #104 center 679.19,265.08,669.9 radius 173.13
    70471 
    70472 > volume erase #104 center 712.3,653.46,453.51 radius 173.13
    70473 
    70474 > volume erase #104 center 933.46,435.63,382.11 radius 173.13
    70475 
    70476 > volume erase #104 center 686.53,436.27,325.5 radius 173.13
    70477 
    70478 > volume erase #104 center 919.63,250.56,604.23 radius 173.13
    70479 
    70480 > volume erase #104 center 898.54,244.83,603.89 radius 173.13
    70481 
    70482 [Repeated 1 time(s)]
    70483 
    70484 > volume erase #104 center 680.09,206.07,598.64 radius 173.13
    70485 
    70486 > volume erase #104 center 895.71,248.28,603.49 radius 173.13
    70487 
    70488 > volume erase #104 center 681.24,655.87,555.01 radius 173.13
    70489 
    70490 > volume erase #104 center 820.74,703.21,533.09 radius 173.13
    70491 
    70492 > volume erase #104 center 870.76,722.05,585.21 radius 173.13
    70493 
    70494 > volume erase #104 center 959.91,689.99,485.26 radius 173.13
    70495 
    70496 > volume erase #104 center 535.57,456.82,733.8 radius 173.13
    70497 
    70498 > volume erase #104 center 742.24,477.25,675.98 radius 91.378
    70499 
    70500 > volume erase #104 center 707.14,403.77,596.19 radius 33.17
    70501 
    70502 > volume erase #104 center 614.96,420.41,513.49 radius 33.17
    70503 
    70504 > volume erase #104 center 736.63,433.42,613.02 radius 33.17
    70505 
    70506 > volume erase #104 center 834.45,555.87,590.53 radius 33.17
    70507 
    70508 > show #!103 models
    70509 
    70510 > show #!98 models
    70511 
    70512 > hide #!98 models
    70513 
    70514 > volume gaussian #98 sDev 2
    70515 
    70516 Opened 1xPflAB_region.mrc gaussian as #105, grid size 200,200,200, pixel 2.14,
    70517 shown at step 1, values float32 
    70518 
    70519 > hide #!103 models
    70520 
    70521 > hide #!104 models
    70522 
    70523 > close #105
    70524 
    70525 > volume gaussian #98 sDev 1.5
    70526 
    70527 Opened 1xPflAB_region.mrc gaussian as #105, grid size 200,200,200, pixel 2.14,
    70528 shown at step 1, values float32 
    70529 
    70530 > volume erase #105 center 781.9,485.71,512.43 radius 147.45 outside true
    70531 
    70532 > volume erase #105 center 758.02,633.26,590.41 radius 147.45
    70533 
    70534 > volume erase #105 center 695.55,312.58,428.26 radius 147.45
    70535 
    70536 > volume erase #105 center 950.23,321.56,442.66 radius 147.45
    70537 
    70538 > volume erase #105 center 793.41,400.92,664.64 radius 147.45
    70539 
    70540 > volume erase #105 center 735.08,553.48,317.21 radius 147.45
    70541 
    70542 > volume erase #105 center 807.62,404.1,298.54 radius 147.45
    70543 
    70544 > volume #105 level 0.0006923
    70545 
    70546 > volume erase #105 center 817.59,488.09,548.79 radius 45.796
    70547 
    70548 > close #105
    70549 
    70550 > volume gaussian #98 sDev 1.5
    70551 
    70552 Opened 1xPflAB_region.mrc gaussian as #105, grid size 200,200,200, pixel 2.14,
    70553 shown at step 1, values float32 
    70554 
    70555 > volume erase #105 center 781.31,461.6,497.58 radius 148.73 outside true
    70556 
    70557 > volume erase #105 center 791.02,318.44,601.06 radius 148.73
    70558 
    70559 > volume erase #105 center 745.49,326.98,361.1 radius 148.73
    70560 
    70561 > volume erase #105 center 759.36,497.86,295.72 radius 148.73
    70562 
    70563 > volume erase #105 center 789.13,543.88,682.73 radius 148.73
    70564 
    70565 > volume erase #105 center 733.56,666.85,457.34 radius 148.73
    70566 
    70567 > volume erase #105 center 961.03,325.33,517.64 radius 148.73
    70568 
    70569 > volume #105 level 0.0009229
    70570 
    70571 > hide #102 models
    70572 
    70573 > show #!99 models
    70574 
    70575 > volume gaussian #99 sDev 2
    70576 
    70577 Opened 1xFliL.mrc gaussian as #106, grid size 200,200,200, pixel 2.14, shown
    70578 at step 1, values float32 
    70579 
    70580 > hide #!105 models
    70581 
    70582 > show #102 models
    70583 
    70584 > volume erase #106 center 813.72,389.77,462.24 radius 81.32 outside true
    70585 
    70586 > volume erase #106 center 822.6,364.5,336.25 radius 81.32
    70587 
    70588 > volume erase #106 center 758.13,418.61,344.41 radius 81.32
    70589 
    70590 > volume erase #106 center 697.35,350.59,412.64 radius 81.32
    70591 
    70592 > volume erase #106 center 764.38,274.6,414.23 radius 81.32
    70593 
    70594 > volume erase #106 center 919.39,299.8,428.71 radius 81.32
    70595 
    70596 > volume erase #106 center 690.31,438.35,408.57 radius 81.32
    70597 
    70598 > volume erase #106 center 802.55,400.1,569.96 radius 81.32
    70599 
    70600 > volume erase #106 center 840,286.64,550.41 radius 81.32
    70601 
    70602 > volume erase #106 center 864.62,409.05,368.26 radius 50.076
    70603 
    70604 > volume erase #106 center 870.87,331.2,485.64 radius 50.076
    70605 
    70606 > hide #102 models
    70607 
    70608 > show #!101 models
    70609 
    70610 > show #!103 models
    70611 
    70612 > show #!104 models
    70613 
    70614 > show #!105 models
    70615 
    70616 > show #!100 models
    70617 
    70618 > show #!3 models
    70619 
    70620 > view orient
    70621 
    70622 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    70623 > includeMaps true
    70624 
    70625 > turn z 21.176471 models #100 center #3
    70626 
    70627 > volume copy #100
    70628 
    70629 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    70630 pixel 2.14, shown at step 1, values float32 
    70631 
    70632 > volume #100 show
    70633 
    70634 > turn z 21.176471 models #100 center #3
    70635 
    70636 > volume copy #100
    70637 
    70638 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    70639 pixel 2.14, shown at step 1, values float32 
    70640 
    70641 > volume #100 show
    70642 
    70643 > turn z 21.176471 models #100 center #3
    70644 
    70645 > volume copy #100
    70646 
    70647 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    70648 pixel 2.14, shown at step 1, values float32 
    70649 
    70650 > volume #100 show
    70651 
    70652 > turn z 21.176471 models #100 center #3
    70653 
    70654 > volume copy #100
    70655 
    70656 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    70657 pixel 2.14, shown at step 1, values float32 
    70658 
    70659 > volume #100 show
    70660 
    70661 > turn z 21.176471 models #100 center #3
    70662 
    70663 > volume copy #100
    70664 
    70665 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    70666 pixel 2.14, shown at step 1, values float32 
    70667 
    70668 > volume #100 show
    70669 
    70670 > turn z 21.176471 models #100 center #3
    70671 
    70672 > volume copy #100
    70673 
    70674 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    70675 pixel 2.14, shown at step 1, values float32 
    70676 
    70677 > volume #100 show
    70678 
    70679 > turn z 21.176471 models #100 center #3
    70680 
    70681 > volume copy #100
    70682 
    70683 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    70684 pixel 2.14, shown at step 1, values float32 
    70685 
    70686 > volume #100 show
    70687 
    70688 > turn z 21.176471 models #100 center #3
    70689 
    70690 > volume copy #100
    70691 
    70692 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    70693 pixel 2.14, shown at step 1, values float32 
    70694 
    70695 > volume #100 show
    70696 
    70697 > turn z 21.176471 models #100 center #3
    70698 
    70699 > volume copy #100
    70700 
    70701 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    70702 pixel 2.14, shown at step 1, values float32 
    70703 
    70704 > volume #100 show
    70705 
    70706 > turn z 21.176471 models #100 center #3
    70707 
    70708 > volume copy #100
    70709 
    70710 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    70711 pixel 2.14, shown at step 1, values float32 
    70712 
    70713 > volume #100 show
    70714 
    70715 > turn z 21.176471 models #100 center #3
    70716 
    70717 > volume copy #100
    70718 
    70719 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    70720 pixel 2.14, shown at step 1, values float32 
    70721 
    70722 > volume #100 show
    70723 
    70724 > turn z 21.176471 models #100 center #3
    70725 
    70726 > volume copy #100
    70727 
    70728 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    70729 pixel 2.14, shown at step 1, values float32 
    70730 
    70731 > volume #100 show
    70732 
    70733 > turn z 21.176471 models #100 center #3
    70734 
    70735 > volume copy #100
    70736 
    70737 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    70738 pixel 2.14, shown at step 1, values float32 
    70739 
    70740 > volume #100 show
    70741 
    70742 > turn z 21.176471 models #100 center #3
    70743 
    70744 > volume copy #100
    70745 
    70746 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    70747 pixel 2.14, shown at step 1, values float32 
    70748 
    70749 > volume #100 show
    70750 
    70751 > turn z 21.176471 models #100 center #3
    70752 
    70753 > volume copy #100
    70754 
    70755 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    70756 pixel 2.14, shown at step 1, values float32 
    70757 
    70758 > volume #100 show
    70759 
    70760 > turn z 21.176471 models #100 center #3
    70761 
    70762 > volume copy #100
    70763 
    70764 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    70765 pixel 2.14, shown at step 1, values float32 
    70766 
    70767 > volume #100 show
    70768 
    70769 > turn z 21.176471 models #100 center #3
    70770 
    70771 > volume copy #100
    70772 
    70773 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    70774 pixel 2.14, shown at step 1, values float32 
    70775 
    70776 > volume #100 show
    70777 
    70778 > turn z 21.176471 models #101 center #3
    70779 
    70780 > volume copy #101
    70781 
    70782 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    70783 pixel 2.14, shown at step 1, values float32 
    70784 
    70785 > volume #101 show
    70786 
    70787 > turn z 21.176471 models #101 center #3
    70788 
    70789 > volume copy #101
    70790 
    70791 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    70792 pixel 2.14, shown at step 1, values float32 
    70793 
    70794 > volume #101 show
    70795 
    70796 > turn z 21.176471 models #101 center #3
    70797 
    70798 > volume copy #101
    70799 
    70800 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    70801 pixel 2.14, shown at step 1, values float32 
    70802 
    70803 > volume #101 show
    70804 
    70805 > turn z 21.176471 models #101 center #3
    70806 
    70807 > volume copy #101
    70808 
    70809 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    70810 pixel 2.14, shown at step 1, values float32 
    70811 
    70812 > volume #101 show
    70813 
    70814 > turn z 21.176471 models #101 center #3
    70815 
    70816 > volume copy #101
    70817 
    70818 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    70819 pixel 2.14, shown at step 1, values float32 
    70820 
    70821 > volume #101 show
    70822 
    70823 > turn z 21.176471 models #101 center #3
    70824 
    70825 > volume copy #101
    70826 
    70827 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    70828 pixel 2.14, shown at step 1, values float32 
    70829 
    70830 > volume #101 show
    70831 
    70832 > turn z 21.176471 models #101 center #3
    70833 
    70834 > volume copy #101
    70835 
    70836 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    70837 pixel 2.14, shown at step 1, values float32 
    70838 
    70839 > volume #101 show
    70840 
    70841 > turn z 21.176471 models #101 center #3
    70842 
    70843 > volume copy #101
    70844 
    70845 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    70846 pixel 2.14, shown at step 1, values float32 
    70847 
    70848 > volume #101 show
    70849 
    70850 > turn z 21.176471 models #101 center #3
    70851 
    70852 > volume copy #101
    70853 
    70854 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    70855 pixel 2.14, shown at step 1, values float32 
    70856 
    70857 > volume #101 show
    70858 
    70859 > turn z 21.176471 models #101 center #3
    70860 
    70861 > volume copy #101
    70862 
    70863 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    70864 pixel 2.14, shown at step 1, values float32 
    70865 
    70866 > volume #101 show
    70867 
    70868 > turn z 21.176471 models #101 center #3
    70869 
    70870 > volume copy #101
    70871 
    70872 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    70873 pixel 2.14, shown at step 1, values float32 
    70874 
    70875 > volume #101 show
    70876 
    70877 > turn z 21.176471 models #101 center #3
    70878 
    70879 > volume copy #101
    70880 
    70881 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    70882 pixel 2.14, shown at step 1, values float32 
    70883 
    70884 > volume #101 show
    70885 
    70886 > turn z 21.176471 models #101 center #3
    70887 
    70888 > volume copy #101
    70889 
    70890 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    70891 pixel 2.14, shown at step 1, values float32 
    70892 
    70893 > volume #101 show
    70894 
    70895 > turn z 21.176471 models #101 center #3
    70896 
    70897 > volume copy #101
    70898 
    70899 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    70900 pixel 2.14, shown at step 1, values float32 
    70901 
    70902 > volume #101 show
    70903 
    70904 > turn z 21.176471 models #101 center #3
    70905 
    70906 > volume copy #101
    70907 
    70908 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    70909 pixel 2.14, shown at step 1, values float32 
    70910 
    70911 > volume #101 show
    70912 
    70913 > turn z 21.176471 models #101 center #3
    70914 
    70915 > volume copy #101
    70916 
    70917 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    70918 pixel 2.14, shown at step 1, values float32 
    70919 
    70920 > volume #101 show
    70921 
    70922 > turn z 21.176471 models #101 center #3
    70923 
    70924 > volume copy #101
    70925 
    70926 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    70927 pixel 2.14, shown at step 1, values float32 
    70928 
    70929 > volume #101 show
    70930 
    70931 > turn z 21.176471 models #103 center #3
    70932 
    70933 > volume copy #103
    70934 
    70935 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    70936 shown at step 1, values float32 
    70937 
    70938 > volume #103 show
    70939 
    70940 > turn z 21.176471 models #103 center #3
    70941 
    70942 > volume copy #103
    70943 
    70944 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    70945 shown at step 1, values float32 
    70946 
    70947 > volume #103 show
    70948 
    70949 > turn z 21.176471 models #103 center #3
    70950 
    70951 > volume copy #103
    70952 
    70953 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    70954 shown at step 1, values float32 
    70955 
    70956 > volume #103 show
    70957 
    70958 > turn z 21.176471 models #103 center #3
    70959 
    70960 > volume copy #103
    70961 
    70962 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    70963 shown at step 1, values float32 
    70964 
    70965 > volume #103 show
    70966 
    70967 > turn z 21.176471 models #103 center #3
    70968 
    70969 > volume copy #103
    70970 
    70971 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    70972 shown at step 1, values float32 
    70973 
    70974 > volume #103 show
    70975 
    70976 > turn z 21.176471 models #103 center #3
    70977 
    70978 > volume copy #103
    70979 
    70980 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    70981 shown at step 1, values float32 
    70982 
    70983 > volume #103 show
    70984 
    70985 > turn z 21.176471 models #103 center #3
    70986 
    70987 > volume copy #103
    70988 
    70989 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    70990 shown at step 1, values float32 
    70991 
    70992 > volume #103 show
    70993 
    70994 > turn z 21.176471 models #103 center #3
    70995 
    70996 > volume copy #103
    70997 
    70998 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    70999 shown at step 1, values float32 
    71000 
    71001 > volume #103 show
    71002 
    71003 > turn z 21.176471 models #103 center #3
    71004 
    71005 > volume copy #103
    71006 
    71007 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    71008 shown at step 1, values float32 
    71009 
    71010 > volume #103 show
    71011 
    71012 > turn z 21.176471 models #103 center #3
    71013 
    71014 > volume copy #103
    71015 
    71016 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    71017 shown at step 1, values float32 
    71018 
    71019 > volume #103 show
    71020 
    71021 > turn z 21.176471 models #103 center #3
    71022 
    71023 > volume copy #103
    71024 
    71025 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    71026 shown at step 1, values float32 
    71027 
    71028 > volume #103 show
    71029 
    71030 > turn z 21.176471 models #103 center #3
    71031 
    71032 > volume copy #103
    71033 
    71034 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    71035 shown at step 1, values float32 
    71036 
    71037 > volume #103 show
    71038 
    71039 > turn z 21.176471 models #103 center #3
    71040 
    71041 > volume copy #103
    71042 
    71043 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    71044 shown at step 1, values float32 
    71045 
    71046 > volume #103 show
    71047 
    71048 > turn z 21.176471 models #103 center #3
    71049 
    71050 > volume copy #103
    71051 
    71052 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    71053 shown at step 1, values float32 
    71054 
    71055 > volume #103 show
    71056 
    71057 > turn z 21.176471 models #103 center #3
    71058 
    71059 > volume copy #103
    71060 
    71061 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    71062 shown at step 1, values float32 
    71063 
    71064 > volume #103 show
    71065 
    71066 > turn z 21.176471 models #103 center #3
    71067 
    71068 > volume copy #103
    71069 
    71070 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    71071 shown at step 1, values float32 
    71072 
    71073 > volume #103 show
    71074 
    71075 > turn z 21.176471 models #103 center #3
    71076 
    71077 > volume copy #103
    71078 
    71079 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    71080 shown at step 1, values float32 
    71081 
    71082 > volume #103 show
    71083 
    71084 > turn z 21.176471 models #104 center #3
    71085 
    71086 > volume copy #104
    71087 
    71088 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    71089 shown at step 1, values float32 
    71090 
    71091 > volume #104 show
    71092 
    71093 > turn z 21.176471 models #104 center #3
    71094 
    71095 > volume copy #104
    71096 
    71097 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    71098 shown at step 1, values float32 
    71099 
    71100 > volume #104 show
    71101 
    71102 > turn z 21.176471 models #104 center #3
    71103 
    71104 > volume copy #104
    71105 
    71106 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    71107 shown at step 1, values float32 
    71108 
    71109 > volume #104 show
    71110 
    71111 > turn z 21.176471 models #104 center #3
    71112 
    71113 > volume copy #104
    71114 
    71115 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    71116 shown at step 1, values float32 
    71117 
    71118 > volume #104 show
    71119 
    71120 > turn z 21.176471 models #104 center #3
    71121 
    71122 > volume copy #104
    71123 
    71124 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    71125 shown at step 1, values float32 
    71126 
    71127 > volume #104 show
    71128 
    71129 > turn z 21.176471 models #104 center #3
    71130 
    71131 > volume copy #104
    71132 
    71133 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    71134 shown at step 1, values float32 
    71135 
    71136 > volume #104 show
    71137 
    71138 > turn z 21.176471 models #104 center #3
    71139 
    71140 > volume copy #104
    71141 
    71142 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    71143 shown at step 1, values float32 
    71144 
    71145 > volume #104 show
    71146 
    71147 > turn z 21.176471 models #104 center #3
    71148 
    71149 > volume copy #104
    71150 
    71151 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    71152 shown at step 1, values float32 
    71153 
    71154 > volume #104 show
    71155 
    71156 > turn z 21.176471 models #104 center #3
    71157 
    71158 > volume copy #104
    71159 
    71160 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    71161 shown at step 1, values float32 
    71162 
    71163 > volume #104 show
    71164 
    71165 > turn z 21.176471 models #104 center #3
    71166 
    71167 > volume copy #104
    71168 
    71169 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    71170 shown at step 1, values float32 
    71171 
    71172 > volume #104 show
    71173 
    71174 > turn z 21.176471 models #104 center #3
    71175 
    71176 > volume copy #104
    71177 
    71178 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    71179 shown at step 1, values float32 
    71180 
    71181 > volume #104 show
    71182 
    71183 > turn z 21.176471 models #104 center #3
    71184 
    71185 > volume copy #104
    71186 
    71187 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    71188 shown at step 1, values float32 
    71189 
    71190 > volume #104 show
    71191 
    71192 > turn z 21.176471 models #104 center #3
    71193 
    71194 > volume copy #104
    71195 
    71196 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    71197 shown at step 1, values float32 
    71198 
    71199 > volume #104 show
    71200 
    71201 > turn z 21.176471 models #104 center #3
    71202 
    71203 > volume copy #104
    71204 
    71205 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    71206 shown at step 1, values float32 
    71207 
    71208 > volume #104 show
    71209 
    71210 > turn z 21.176471 models #104 center #3
    71211 
    71212 > volume copy #104
    71213 
    71214 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    71215 shown at step 1, values float32 
    71216 
    71217 > volume #104 show
    71218 
    71219 > turn z 21.176471 models #104 center #3
    71220 
    71221 > volume copy #104
    71222 
    71223 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    71224 shown at step 1, values float32 
    71225 
    71226 > volume #104 show
    71227 
    71228 > turn z 21.176471 models #104 center #3
    71229 
    71230 > volume copy #104
    71231 
    71232 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    71233 shown at step 1, values float32 
    71234 
    71235 > volume #104 show
    71236 
    71237 > turn z 21.176471 models #106 center #3
    71238 
    71239 > volume copy #106
    71240 
    71241 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    71242 shown at step 1, values float32 
    71243 
    71244 > volume #106 show
    71245 
    71246 > turn z 21.176471 models #106 center #3
    71247 
    71248 > volume copy #106
    71249 
    71250 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    71251 shown at step 1, values float32 
    71252 
    71253 > volume #106 show
    71254 
    71255 > turn z 21.176471 models #106 center #3
    71256 
    71257 > volume copy #106
    71258 
    71259 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    71260 shown at step 1, values float32 
    71261 
    71262 > volume #106 show
    71263 
    71264 > turn z 21.176471 models #106 center #3
    71265 
    71266 > volume copy #106
    71267 
    71268 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    71269 shown at step 1, values float32 
    71270 
    71271 > volume #106 show
    71272 
    71273 > turn z 21.176471 models #106 center #3
    71274 
    71275 > volume copy #106
    71276 
    71277 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    71278 shown at step 1, values float32 
    71279 
    71280 > volume #106 show
    71281 
    71282 > turn z 21.176471 models #106 center #3
    71283 
    71284 > volume copy #106
    71285 
    71286 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    71287 shown at step 1, values float32 
    71288 
    71289 > volume #106 show
    71290 
    71291 > turn z 21.176471 models #106 center #3
    71292 
    71293 > volume copy #106
    71294 
    71295 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    71296 shown at step 1, values float32 
    71297 
    71298 > volume #106 show
    71299 
    71300 > turn z 21.176471 models #106 center #3
    71301 
    71302 > volume copy #106
    71303 
    71304 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    71305 shown at step 1, values float32 
    71306 
    71307 > volume #106 show
    71308 
    71309 > turn z 21.176471 models #106 center #3
    71310 
    71311 > volume copy #106
    71312 
    71313 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    71314 shown at step 1, values float32 
    71315 
    71316 > volume #106 show
    71317 
    71318 > turn z 21.176471 models #106 center #3
    71319 
    71320 > volume copy #106
    71321 
    71322 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    71323 shown at step 1, values float32 
    71324 
    71325 > volume #106 show
    71326 
    71327 > turn z 21.176471 models #106 center #3
    71328 
    71329 > volume copy #106
    71330 
    71331 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    71332 shown at step 1, values float32 
    71333 
    71334 > volume #106 show
    71335 
    71336 > turn z 21.176471 models #106 center #3
    71337 
    71338 > volume copy #106
    71339 
    71340 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    71341 shown at step 1, values float32 
    71342 
    71343 > volume #106 show
    71344 
    71345 > turn z 21.176471 models #106 center #3
    71346 
    71347 > volume copy #106
    71348 
    71349 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    71350 shown at step 1, values float32 
    71351 
    71352 > volume #106 show
    71353 
    71354 > turn z 21.176471 models #106 center #3
    71355 
    71356 > volume copy #106
    71357 
    71358 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    71359 shown at step 1, values float32 
    71360 
    71361 > volume #106 show
    71362 
    71363 > turn z 21.176471 models #106 center #3
    71364 
    71365 > volume copy #106
    71366 
    71367 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    71368 shown at step 1, values float32 
    71369 
    71370 > volume #106 show
    71371 
    71372 > turn z 21.176471 models #106 center #3
    71373 
    71374 > volume copy #106
    71375 
    71376 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    71377 shown at step 1, values float32 
    71378 
    71379 > volume #106 show
    71380 
    71381 > turn z 21.176471 models #106 center #3
    71382 
    71383 > volume copy #106
    71384 
    71385 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    71386 shown at step 1, values float32 
    71387 
    71388 > volume #106 show
    71389 
    71390 > show #!79 models
    71391 
    71392 > hide #!79 models
    71393 
    71394 > show #!79 models
    71395 
    71396 > volume #79 level 0.1628
    71397 
    71398 > volume #79 level 0.1593
    71399 
    71400 > surface dust #3 size 43
    71401 
    71402 > surface dust #79 size 43
    71403 
    71404 > surface dust #101 size 21.4
    71405 
    71406 > surface dust #100 size 21.4
    71407 
    71408 > surface dust #103 size 21.4
    71409 
    71410 > surface dust #104 size 21.4
    71411 
    71412 > surface dust #105 size 21.4
    71413 
    71414 > surface dust #106 size 21.4
    71415 
    71416 > surface dust #107 size 21.4
    71417 
    71418 > surface dust #108 size 21.4
    71419 
    71420 > surface dust #109 size 21.4
    71421 
    71422 > surface dust #110 size 21.4
    71423 
    71424 > surface dust #111 size 21.4
    71425 
    71426 > surface dust #112 size 21.4
    71427 
    71428 > surface dust #113 size 21.4
    71429 
    71430 > surface dust #114 size 21.4
    71431 
    71432 > surface dust #115 size 21.4
    71433 
    71434 > surface dust #116 size 21.4
    71435 
    71436 > surface dust #117 size 21.4
    71437 
    71438 > surface dust #118 size 21.4
    71439 
    71440 > surface dust #119 size 21.4
    71441 
    71442 > surface dust #120 size 21.4
    71443 
    71444 > surface dust #121 size 21.4
    71445 
    71446 > surface dust #122 size 21.4
    71447 
    71448 > surface dust #123 size 21.4
    71449 
    71450 > surface dust #124 size 21.4
    71451 
    71452 > surface dust #125 size 21.4
    71453 
    71454 > surface dust #126 size 21.4
    71455 
    71456 > surface dust #127 size 21.4
    71457 
    71458 > surface dust #128 size 21.4
    71459 
    71460 > surface dust #129 size 21.4
    71461 
    71462 > surface dust #130 size 21.4
    71463 
    71464 > surface dust #131 size 21.4
    71465 
    71466 > surface dust #132 size 21.4
    71467 
    71468 > surface dust #133 size 21.4
    71469 
    71470 > surface dust #134 size 21.4
    71471 
    71472 > surface dust #135 size 21.4
    71473 
    71474 > surface dust #136 size 21.4
    71475 
    71476 > surface dust #137 size 21.4
    71477 
    71478 > surface dust #138 size 21.4
    71479 
    71480 > surface dust #139 size 21.4
    71481 
    71482 > surface dust #140 size 21.4
    71483 
    71484 > surface dust #141 size 21.4
    71485 
    71486 > surface dust #142 size 21.4
    71487 
    71488 > surface dust #143 size 21.4
    71489 
    71490 > surface dust #144 size 21.4
    71491 
    71492 > surface dust #145 size 21.4
    71493 
    71494 > surface dust #146 size 21.4
    71495 
    71496 > surface dust #147 size 21.4
    71497 
    71498 > surface dust #148 size 21.4
    71499 
    71500 > surface dust #149 size 21.4
    71501 
    71502 > surface dust #150 size 21.4
    71503 
    71504 > surface dust #151 size 21.4
    71505 
    71506 > surface dust #152 size 21.4
    71507 
    71508 > surface dust #153 size 21.4
    71509 
    71510 > surface dust #154 size 21.4
    71511 
    71512 > surface dust #155 size 21.4
    71513 
    71514 > surface dust #156 size 21.4
    71515 
    71516 > surface dust #157 size 21.4
    71517 
    71518 > surface dust #158 size 21.4
    71519 
    71520 > surface dust #159 size 21.4
    71521 
    71522 > surface dust #160 size 21.4
    71523 
    71524 > surface dust #161 size 21.4
    71525 
    71526 > surface dust #162 size 21.4
    71527 
    71528 > surface dust #163 size 21.4
    71529 
    71530 > surface dust #164 size 21.4
    71531 
    71532 > surface dust #165 size 21.4
    71533 
    71534 > surface dust #166 size 21.4
    71535 
    71536 > surface dust #167 size 21.4
    71537 
    71538 > surface dust #168 size 21.4
    71539 
    71540 > surface dust #169 size 21.4
    71541 
    71542 > surface dust #170 size 21.4
    71543 
    71544 > surface dust #171 size 21.4
    71545 
    71546 > surface dust #172 size 21.4
    71547 
    71548 > surface dust #173 size 21.4
    71549 
    71550 > surface dust #174 size 21.4
    71551 
    71552 > surface dust #175 size 21.4
    71553 
    71554 > surface dust #176 size 21.4
    71555 
    71556 > surface dust #177 size 21.4
    71557 
    71558 > surface dust #178 size 21.4
    71559 
    71560 > surface dust #179 size 21.4
    71561 
    71562 > surface dust #180 size 21.4
    71563 
    71564 > surface dust #181 size 21.4
    71565 
    71566 > surface dust #182 size 21.4
    71567 
    71568 > surface dust #183 size 21.4
    71569 
    71570 > surface dust #184 size 21.4
    71571 
    71572 > surface dust #185 size 21.4
    71573 
    71574 > surface dust #186 size 21.4
    71575 
    71576 > surface dust #187 size 21.4
    71577 
    71578 > surface dust #188 size 21.4
    71579 
    71580 > surface dust #189 size 21.4
    71581 
    71582 > surface dust #190 size 21.4
    71583 
    71584 > surface dust #191 size 21.4
    71585 
    71586 > show #!90 models
    71587 
    71588 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    71589 > includeMaps true
    71590 
    71591 > show #!97 models
    71592 
    71593 > hide #!97 models
    71594 
    71595 > hide #!90 models
    71596 
    71597 > hide #!100-191 models
    71598 
    71599 > hide #!3 models
    71600 
    71601 > hide #!79 models
    71602 
    71603 > show #!97 models
    71604 
    71605 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    71606 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-review/PDB/From_PDB/6ykm-
    71607 > MotA-only.pdb"
    71608 
    71609 Chain information for 6ykm-MotA-only.pdb #192 
    71610 --- 
    71611 Chain | Description 
    71612 A B C D E | No description available 
    71613  
    71614 
    71615 > select add #192
    71616 
    71617 9770 atoms, 9945 bonds, 1275 residues, 1 model selected 
    71618 
    71619 > hide sel atoms
    71620 
    71621 > show sel cartoons
    71622 
    71623 > color #97 #737259ff models
    71624 
    71625 > color #97 #737259a6 models
    71626 
    71627 > ui mousemode right "translate selected models"
    71628 
    71629 > view matrix models #192,1,0,0,310.87,0,1,0,-71.092,0,0,1,-263.17
    71630 
    71631 > view matrix models #192,1,0,0,391.76,0,1,0,95.092,0,0,1,29.173
    71632 
    71633 > view matrix models #192,1,0,0,519.88,0,1,0,106.67,0,0,1,-21.308
    71634 
    71635 > view matrix models #192,1,0,0,516.85,0,1,0,73.428,0,0,1,-24.051
    71636 
    71637 > view matrix models #192,1,0,0,517.91,0,1,0,71.221,0,0,1,-27.42
    71638 
    71639 > ui tool show "Fit in Map"
    71640 
    71641 > fitmap #192 inMap #97
    71642 
    71643 Fit molecule 6ykm-MotA-only.pdb (#192) to map Single-MotA-ring.mrc (#97) using
    71644 9770 atoms 
    71645 average map value = 0.01292, steps = 92 
    71646 shifted from previous position = 2.78 
    71647 rotated from previous position = 16.5 degrees 
    71648 atoms outside contour = 2537, contour level = 0.0025221 
    71649  
    71650 Position of 6ykm-MotA-only.pdb (#192) relative to Single-MotA-ring.mrc (#97)
    71651 coordinates: 
    71652 Matrix rotation and translation 
    71653 0.93131251 -0.36421870 -0.00132323 101.07630370 
    71654 0.35563891 0.90857781 0.21910574 -362.60912716 
    71655 -0.07860015 -0.20452651 0.97570022 -161.37208721 
    71656 Axis -0.50502926 0.09212496 0.85817157 
    71657 Axis point 909.62525032 -203.15588010 0.00000000 
    71658 Rotation angle (degrees) 24.79756955 
    71659 Shift along axis -222.93678080 
    71660  
    71661 
    71662 > fitmap #192 inMap #97
    71663 
    71664 Fit molecule 6ykm-MotA-only.pdb (#192) to map Single-MotA-ring.mrc (#97) using
    71665 9770 atoms 
    71666 average map value = 0.01292, steps = 48 
    71667 shifted from previous position = 0.00729 
    71668 rotated from previous position = 0.0262 degrees 
    71669 atoms outside contour = 2539, contour level = 0.0025221 
    71670  
    71671 Position of 6ykm-MotA-only.pdb (#192) relative to Single-MotA-ring.mrc (#97)
    71672 coordinates: 
    71673 Matrix rotation and translation 
    71674 0.93120884 -0.36448253 -0.00160501 101.30546334 
    71675 0.35597140 0.90850003 0.21888822 -362.59823396 
    71676 -0.07832278 -0.20440199 0.97574862 -161.50864836 
    71677 Axis -0.50444835 0.09142700 0.85858777 
    71678 Axis point 909.38164504 -202.21982554 0.00000000 
    71679 Rotation angle (degrees) 24.80665576 
    71680 Shift along axis -222.92399207 
    71681  
    71682 
    71683 > fitmap #192 inMap #97
    71684 
    71685 Fit molecule 6ykm-MotA-only.pdb (#192) to map Single-MotA-ring.mrc (#97) using
    71686 9770 atoms 
    71687 average map value = 0.01292, steps = 40 
    71688 shifted from previous position = 0.01 
    71689 rotated from previous position = 0.015 degrees 
    71690 atoms outside contour = 2536, contour level = 0.0025221 
    71691  
    71692 Position of 6ykm-MotA-only.pdb (#192) relative to Single-MotA-ring.mrc (#97)
    71693 coordinates: 
    71694 Matrix rotation and translation 
    71695 0.93129340 -0.36426674 -0.00152769 101.17469277 
    71696 0.35573768 0.90856941 0.21898022 -362.58654619 
    71697 -0.07837920 -0.20447829 0.97572810 -161.46755438 
    71698 Axis -0.50482262 0.09161791 0.85834741 
    71699 Axis point 909.74182257 -202.73730925 0.00000000 
    71700 Rotation angle (degrees) 24.79754405 
    71701 Shift along axis -222.88995165 
    71702  
    71703 
    71704 > mlp sel
    71705 
    71706 Map values for surface "6ykm-MotA-only.pdb_A SES surface": minimum -26.09,
    71707 mean -2.55, maximum 24.94 
    71708 Map values for surface "6ykm-MotA-only.pdb_B SES surface": minimum -27.18,
    71709 mean -2.418, maximum 22.6 
    71710 Map values for surface "6ykm-MotA-only.pdb_C SES surface": minimum -26.36,
    71711 mean -2.366, maximum 24.6 
    71712 Map values for surface "6ykm-MotA-only.pdb_D SES surface": minimum -26.03,
    71713 mean -2.469, maximum 23.72 
    71714 Map values for surface "6ykm-MotA-only.pdb_E SES surface": minimum -26.34,
    71715 mean -2.365, maximum 23.11 
    71716 To also show corresponding color key, enter the above mlp command and add key
    71717 true 
    71718 
    71719 > ui tool show "Map Eraser"
    71720 
    71721 > show #102 models
    71722 
    71723 > view matrix models
    71724 > #192,0.97885,-0.19883,0.048188,384.41,0.18517,0.96116,0.20465,-13.223,-0.087008,-0.1914,0.97765,12.45
    71725 
    71726 > undo
    71727 
    71728 > select clear
    71729 
    71730 > select add #102
    71731 
    71732 1 model selected 
    71733 
    71734 > view matrix models #102,1,0,0,788.35,0,1,0,256.25,0,0,1,288.69
    71735 
    71736 > view matrix models #102,1,0,0,784.54,0,1,0,305.75,0,0,1,416.73
    71737 
    71738 > view matrix models #102,1,0,0,718.1,0,1,0,348.68,0,0,1,409.91
    71739 
    71740 > view matrix models #102,1,0,0,731.08,0,1,0,362.38,0,0,1,395.61
    71741 
    71742 > view matrix models #102,1,0,0,734.14,0,1,0,360.72,0,0,1,396.43
    71743 
    71744 > volume erase #97 center 734.14,360.72,396.43 radius 57.78
    71745 
    71746 > view matrix models #102,1,0,0,759.05,0,1,0,325.9,0,0,1,411.92
    71747 
    71748 > view matrix models #102,1,0,0,747.75,0,1,0,328.06,0,0,1,382.84
    71749 
    71750 > view matrix models #102,1,0,0,757.86,0,1,0,330.48,0,0,1,382.37
    71751 
    71752 > volume erase #97 center 757.86,330.48,382.37 radius 57.78
    71753 
    71754 > view matrix models #102,1,0,0,786.76,0,1,0,312.14,0,0,1,387.44
    71755 
    71756 > view matrix models #102,1,0,0,803.59,0,1,0,313.69,0,0,1,379.29
    71757 
    71758 > view matrix models #102,1,0,0,804.48,0,1,0,337.58,0,0,1,373.35
    71759 
    71760 > view matrix models #102,1,0,0,818.78,0,1,0,337.73,0,0,1,376.33
    71761 
    71762 > view matrix models #102,1,0,0,792.94,0,1,0,334.51,0,0,1,371.06
    71763 
    71764 > view matrix models #102,1,0,0,793.98,0,1,0,338.04,0,0,1,370.31
    71765 
    71766 > volume erase #97 center 793.98,338.04,370.31 radius 34.026
    71767 
    71768 > view matrix models #102,1,0,0,830.25,0,1,0,321.5,0,0,1,375.05
    71769 
    71770 > view matrix models #102,1,0,0,828.35,0,1,0,333.31,0,0,1,377.56
    71771 
    71772 > view matrix models #102,1,0,0,825.74,0,1,0,335.74,0,0,1,372.92
    71773 
    71774 > volume erase #97 center 825.74,335.74,372.92 radius 34.026
    71775 
    71776 > view matrix models #102,1,0,0,901.77,0,1,0,340.29,0,0,1,357.06
    71777 
    71778 > view matrix models #102,1,0,0,900.5,0,1,0,433.21,0,0,1,350.14
    71779 
    71780 > view matrix models #102,1,0,0,865.47,0,1,0,457.69,0,0,1,353.3
    71781 
    71782 > view matrix models #102,1,0,0,860.08,0,1,0,465.23,0,0,1,366.42
    71783 
    71784 > view matrix models #102,1,0,0,865.43,0,1,0,455.46,0,0,1,363.77
    71785 
    71786 > view matrix models #102,1,0,0,865.17,0,1,0,456.67,0,0,1,368.81
    71787 
    71788 > view matrix models #102,1,0,0,864.49,0,1,0,455.82,0,0,1,367.83
    71789 
    71790 > volume erase #97 center 864.49,455.82,367.83 radius 34.026
    71791 
    71792 > view matrix models #102,1,0,0,867.81,0,1,0,480.17,0,0,1,444.3
    71793 
    71794 > select subtract #102
    71795 
    71796 Nothing selected 
    71797 
    71798 > hide #102 models
    71799 
    71800 > hide #!97 models
    71801 
    71802 > show #!97 models
    71803 
    71804 > volume gaussian #97 sDev 3
    71805 
    71806 Opened Single-MotA-ring.mrc gaussian as #193, grid size 200,200,200, pixel
    71807 2.14, shown at step 1, values float32 
    71808 
    71809 > close #192
    71810 
    71811 > show #102 models
    71812 
    71813 > select add #102
    71814 
    71815 1 model selected 
    71816 
    71817 > view matrix models #102,1,0,0,887.49,0,1,0,431.5,0,0,1,364.44
    71818 
    71819 > view matrix models #102,1,0,0,868.09,0,1,0,448.32,0,0,1,341.15
    71820 
    71821 > view matrix models #102,1,0,0,807.1,0,1,0,406.62,0,0,1,348.07
    71822 
    71823 > close #193
    71824 
    71825 > volume gaussian #97 sDev 2.5
    71826 
    71827 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    71828 2.14, shown at step 1, values float32 
    71829 
    71830 > view matrix models #102,1,0,0,803.3,0,1,0,389.04,0,0,1,345.78
    71831 
    71832 > view matrix models #102,1,0,0,803.04,0,1,0,388.19,0,0,1,344.76
    71833 
    71834 > volume erase #192 center 803.04,388.19,344.76 radius 95.872 outside true
    71835 
    71836 > view matrix models #102,1,0,0,880.05,0,1,0,312.71,0,0,1,375.72
    71837 
    71838 > view matrix models #102,1,0,0,911.02,0,1,0,290.22,0,0,1,367.19
    71839 
    71840 > view matrix models #102,1,0,0,903.26,0,1,0,290.16,0,0,1,356.47
    71841 
    71842 > volume erase #192 center 903.26,290.16,356.47 radius 95.872
    71843 
    71844 > view matrix models #102,1,0,0,704.54,0,1,0,494.29,0,0,1,454.96
    71845 
    71846 > view matrix models #102,1,0,0,920.06,0,1,0,337.52,0,0,1,465.3
    71847 
    71848 > view matrix models #102,1,0,0,954.27,0,1,0,349.71,0,0,1,390.14
    71849 
    71850 > view matrix models #102,1,0,0,937.78,0,1,0,341.52,0,0,1,354.61
    71851 
    71852 > volume erase #192 center 937.78,341.52,354.61 radius 95.872
    71853 
    71854 > view matrix models #102,1,0,0,666.62,0,1,0,406.86,0,0,1,403.15
    71855 
    71856 > view matrix models #102,1,0,0,660.26,0,1,0,395.83,0,0,1,351.92
    71857 
    71858 > view matrix models #102,1,0,0,661.04,0,1,0,391.4,0,0,1,351.38
    71859 
    71860 > volume erase #192 center 661.04,391.4,351.38 radius 95.872
    71861 
    71862 > view matrix models #102,1,0,0,676.12,0,1,0,484.84,0,0,1,354.56
    71863 
    71864 > view matrix models #102,1,0,0,702.87,0,1,0,477.99,0,0,1,428.6
    71865 
    71866 > view matrix models #102,1,0,0,700.58,0,1,0,477.63,0,0,1,427.48
    71867 
    71868 > volume erase #192 center 700.58,477.63,427.48 radius 95.872
    71869 
    71870 > view matrix models #102,1,0,0,883.6,0,1,0,474.85,0,0,1,475.41
    71871 
    71872 > view matrix models #102,1,0,0,932.14,0,1,0,438.27,0,0,1,440.71
    71873 
    71874 > volume erase #192 center 932.14,438.27,440.71 radius 95.872
    71875 
    71876 > view matrix models #102,1,0,0,768.92,0,1,0,240.95,0,0,1,416.7
    71877 
    71878 > view matrix models #102,1,0,0,793.99,0,1,0,270.9,0,0,1,420.59
    71879 
    71880 > volume erase #192 center 793.99,270.9,420.59 radius 95.872
    71881 
    71882 > view matrix models #102,1,0,0,676.43,0,1,0,405.35,0,0,1,378.69
    71883 
    71884 > view matrix models #102,1,0,0,782.9,0,1,0,435.12,0,0,1,230.53
    71885 
    71886 > view matrix models #102,1,0,0,765.87,0,1,0,440.24,0,0,1,190.93
    71887 
    71888 > view matrix models #102,1,0,0,743.92,0,1,0,443.98,0,0,1,207.31
    71889 
    71890 > volume erase #192 center 743.92,443.98,207.31 radius 95.872
    71891 
    71892 > view matrix models #102,1,0,0,925.02,0,1,0,347.27,0,0,1,398.05
    71893 
    71894 > view matrix models #102,1,0,0,935.11,0,1,0,333.41,0,0,1,394.61
    71895 
    71896 > view matrix models #102,1,0,0,933.41,0,1,0,336.1,0,0,1,396.05
    71897 
    71898 > volume erase #192 center 933.41,336.1,396.05 radius 95.872
    71899 
    71900 > view matrix models #102,1,0,0,870.11,0,1,0,279.66,0,0,1,377.67
    71901 
    71902 > view matrix models #102,1,0,0,870.66,0,1,0,278.42,0,0,1,378.1
    71903 
    71904 > view matrix models #102,1,0,0,879.46,0,1,0,272.12,0,0,1,393.49
    71905 
    71906 > view matrix models #102,1,0,0,859.15,0,1,0,261.05,0,0,1,400.57
    71907 
    71908 > view matrix models #102,1,0,0,842.56,0,1,0,273,0,0,1,410.65
    71909 
    71910 > view matrix models #102,1,0,0,844.02,0,1,0,277.85,0,0,1,413.99
    71911 
    71912 > volume erase #192 center 844.02,277.85,413.99 radius 95.872
    71913 
    71914 > volume #192 level 0.0009973
    71915 
    71916 > view matrix models #102,1,0,0,693.07,0,1,0,376.22,0,0,1,306.54
    71917 
    71918 > view matrix models #102,1,0,0,654.03,0,1,0,430.61,0,0,1,272.39
    71919 
    71920 > view matrix models #102,1,0,0,683.58,0,1,0,476.06,0,0,1,279.66
    71921 
    71922 > view matrix models #102,1,0,0,686.22,0,1,0,476.68,0,0,1,282.82
    71923 
    71924 > volume erase #192 center 686.22,476.68,282.82 radius 95.872
    71925 
    71926 > view matrix models #102,1,0,0,643.64,0,1,0,373.51,0,0,1,242.64
    71927 
    71928 > select subtract #102
    71929 
    71930 Nothing selected 
    71931 
    71932 > hide #102 models
    71933 
    71934 > show #!3 models
    71935 
    71936 > view orient
    71937 
    71938 > turn z 21.176471 models #192 center #3
    71939 
    71940 > volume copy #192
    71941 
    71942 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    71943 pixel 2.14, shown at step 1, values float32 
    71944 
    71945 > volume #192 show
    71946 
    71947 > turn z 21.176471 models #192 center #3
    71948 
    71949 > volume copy #192
    71950 
    71951 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    71952 pixel 2.14, shown at step 1, values float32 
    71953 
    71954 > volume #192 show
    71955 
    71956 > turn z 21.176471 models #192 center #3
    71957 
    71958 > volume copy #192
    71959 
    71960 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    71961 pixel 2.14, shown at step 1, values float32 
    71962 
    71963 > volume #192 show
    71964 
    71965 > turn z 21.176471 models #192 center #3
    71966 
    71967 > volume copy #192
    71968 
    71969 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    71970 pixel 2.14, shown at step 1, values float32 
    71971 
    71972 > volume #192 show
    71973 
    71974 > turn z 21.176471 models #192 center #3
    71975 
    71976 > volume copy #192
    71977 
    71978 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    71979 pixel 2.14, shown at step 1, values float32 
    71980 
    71981 > volume #192 show
    71982 
    71983 > turn z 21.176471 models #192 center #3
    71984 
    71985 > volume copy #192
    71986 
    71987 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    71988 pixel 2.14, shown at step 1, values float32 
    71989 
    71990 > volume #192 show
    71991 
    71992 > turn z 21.176471 models #192 center #3
    71993 
    71994 > volume copy #192
    71995 
    71996 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    71997 pixel 2.14, shown at step 1, values float32 
    71998 
    71999 > volume #192 show
    72000 
    72001 > turn z 21.176471 models #192 center #3
    72002 
    72003 > volume copy #192
    72004 
    72005 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    72006 pixel 2.14, shown at step 1, values float32 
    72007 
    72008 > volume #192 show
    72009 
    72010 > turn z 21.176471 models #192 center #3
    72011 
    72012 > volume copy #192
    72013 
    72014 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    72015 pixel 2.14, shown at step 1, values float32 
    72016 
    72017 > volume #192 show
    72018 
    72019 > turn z 21.176471 models #192 center #3
    72020 
    72021 > volume copy #192
    72022 
    72023 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    72024 pixel 2.14, shown at step 1, values float32 
    72025 
    72026 > volume #192 show
    72027 
    72028 > turn z 21.176471 models #192 center #3
    72029 
    72030 > volume copy #192
    72031 
    72032 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    72033 pixel 2.14, shown at step 1, values float32 
    72034 
    72035 > volume #192 show
    72036 
    72037 > turn z 21.176471 models #192 center #3
    72038 
    72039 > volume copy #192
    72040 
    72041 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    72042 pixel 2.14, shown at step 1, values float32 
    72043 
    72044 > volume #192 show
    72045 
    72046 > turn z 21.176471 models #192 center #3
    72047 
    72048 > volume copy #192
    72049 
    72050 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    72051 pixel 2.14, shown at step 1, values float32 
    72052 
    72053 > volume #192 show
    72054 
    72055 > turn z 21.176471 models #192 center #3
    72056 
    72057 > volume copy #192
    72058 
    72059 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    72060 pixel 2.14, shown at step 1, values float32 
    72061 
    72062 > volume #192 show
    72063 
    72064 > turn z 21.176471 models #192 center #3
    72065 
    72066 > volume copy #192
    72067 
    72068 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    72069 pixel 2.14, shown at step 1, values float32 
    72070 
    72071 > volume #192 show
    72072 
    72073 > turn z 21.176471 models #192 center #3
    72074 
    72075 > volume copy #192
    72076 
    72077 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    72078 pixel 2.14, shown at step 1, values float32 
    72079 
    72080 > volume #192 show
    72081 
    72082 > turn z 21.176471 models #192 center #3
    72083 
    72084 > volume copy #192
    72085 
    72086 Opened Single-MotA-ring.mrc gaussian copy as #209, grid size 200,200,200,
    72087 pixel 2.14, shown at step 1, values float32 
    72088 
    72089 > volume #192 show
    72090 
    72091 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    72092 > includeMaps true
    72093 
    72094 > hide #!192 models
    72095 
    72096 > hide #!192-209 models
    72097 
    72098 > show #!98 models
    72099 
    72100 > show #!90 models
    72101 
    72102 > color #98 #b2ffffe5 models
    72103 
    72104 > color #98 #b2ffff75 models
    72105 
    72106 > color #98 #b2fffff5 models
    72107 
    72108 > ui tool show "Segment Map"
    72109 
    72110 Segmenting 1xPflAB_region.mrc, density threshold 0.001017 
    72111 Showing 675 region surfaces 
    72112 23655 watershed regions, grouped to 675 regions 
    72113 Showing 1xPflAB_region.seg - 675 regions, 675 surfaces 
    72114 
    72115 > select add #102
    72116 
    72117 676 models selected 
    72118 
    72119 > select clear
    72120 
    72121 > select #102.5
    72122 
    72123 1 model selected 
    72124 
    72125 > select add #102.3
    72126 
    72127 2 models selected 
    72128 
    72129 > select add #102.1
    72130 
    72131 3 models selected 
    72132 
    72133 > select add #102.6
    72134 
    72135 4 models selected 
    72136 
    72137 > select add #102.2
    72138 
    72139 5 models selected 
    72140 
    72141 > select add #102.7
    72142 
    72143 6 models selected 
    72144 
    72145 > select add #102.4
    72146 
    72147 7 models selected 
    72148 
    72149 > select add #102.8
    72150 
    72151 8 models selected 
    72152 Opened 1xPflAB_region_imasked as #210, grid size 200,200,200, pixel 2.14,
    72153 shown at step 1, values float32 
    72154 Segmenting 1xPflAB_region_imasked, density threshold 0.001017 
    72155 Showing 8 region surfaces 
    72156 648 watershed regions, grouped to 8 regions 
    72157 Showing 1xPflAB_region_imasked.seg - 8 regions, 8 surfaces 
    72158 
    72159 > select add #102
    72160 
    72161 9 models selected 
    72162 
    72163 > view matrix models #102,1,0,0,566.55,0,1,0,259.03,0,0,1,150.41
    72164 
    72165 > view matrix models #102,1,0,0,578.08,0,1,0,255.38,0,0,1,143.97
    72166 
    72167 > view matrix models #102,1,0,0,577.11,0,1,0,271.9,0,0,1,244.58
    72168 
    72169 > view matrix models #102,1,0,0,588.42,0,1,0,262.38,0,0,1,243.75
    72170 
    72171 > ui mousemode right "rotate selected models"
    72172 
    72173 > view matrix models
    72174 > #102,0.97772,0.20961,-0.010793,550.06,-0.20924,0.97745,0.028377,302.47,0.016498,-0.025486,0.99954,246.07
    72175 
    72176 > ui mousemode right "translate selected models"
    72177 
    72178 > view matrix models
    72179 > #102,0.97772,0.20961,-0.010793,538.58,-0.20924,0.97745,0.028377,319.31,0.016498,-0.025486,0.99954,246.45
    72180 
    72181 > ui mousemode right "rotate selected models"
    72182 
    72183 > view matrix models
    72184 > #102,0.98149,0.19125,-0.010081,541.64,-0.19094,0.98126,0.025775,315.43,0.014822,-0.023373,0.99962,246.3
    72185 
    72186 > select clear
    72187 
    72188 > select #102.4
    72189 
    72190 1 model selected 
    72191 
    72192 > select add #102.7
    72193 
    72194 2 models selected 
    72195 
    72196 > select add #102.8
    72197 
    72198 3 models selected 
    72199 
    72200 > select add #102.2
    72201 
    72202 4 models selected 
    72203 
    72204 > select add #102.6
    72205 
    72206 5 models selected 
    72207 
    72208 > select add #102.1
    72209 
    72210 6 models selected 
    72211 Grouped 6 regions 
    72212 
    72213 > hide #!98 models
    72214 
    72215 > show #!98 models
    72216 
    72217 > hide #!98 models
    72218 
    72219 > hide #!210 models
    72220 
    72221 > show #!210 models
    72222 
    72223 > hide #!210 models
    72224 
    72225 Opened 1xPflAB_region_imasked_imasked as #211, grid size 200,200,200, pixel
    72226 2.14, shown at step 1, values float32 
    72227 
    72228 > save "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    72229 > Compositions/Resegment-PflABCD/PflAB_wout_FlgYoverlap.mrc" models #211
    72230 
    72231 > close #210-211
    72232 
    72233 > hide #!102 models
    72234 
    72235 > select add #102
    72236 
    72237 4 models selected 
    72238 
    72239 > show #!98 models
    72240 
    72241 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    72242 > Compositions/Resegment-PflABCD/PflAB_wout_FlgYoverlap.mrc"
    72243 
    72244 Opened PflAB_wout_FlgYoverlap.mrc as #210, grid size 200,200,200, pixel 2.14,
    72245 shown at level 0.000859, step 1, values float32 
    72246 
    72247 > select subtract #102
    72248 
    72249 Nothing selected 
    72250 
    72251 > select add #210
    72252 
    72253 2 models selected 
    72254 
    72255 > ui mousemode right "translate selected models"
    72256 
    72257 > view matrix models #210,1,0,0,578.72,0,1,0,299.37,0,0,1,-24.019
    72258 
    72259 > view matrix models #210,1,0,0,597.07,0,1,0,372.63,0,0,1,194.65
    72260 
    72261 > view matrix models #210,1,0,0,582.41,0,1,0,264.41,0,0,1,235.27
    72262 
    72263 > view matrix models #210,1,0,0,582.02,0,1,0,269.07,0,0,1,236.36
    72264 
    72265 > ui mousemode right "rotate selected models"
    72266 
    72267 > view matrix models
    72268 > #210,0.99419,0.10498,0.023912,555.81,-0.10552,0.99417,0.022294,288.03,-0.021432,-0.024687,0.99947,246.29
    72269 
    72270 > ui mousemode right "translate selected models"
    72271 
    72272 > view matrix models
    72273 > #210,0.99419,0.10498,0.023912,549.46,-0.10552,0.99417,0.022294,288.68,-0.021432,-0.024687,0.99947,247.85
    72274 
    72275 > ui mousemode right "rotate selected models"
    72276 
    72277 > view matrix models
    72278 > #210,0.97904,0.19809,0.04735,527.87,-0.20002,0.97897,0.040111,308.25,-0.038409,-0.048742,0.99807,256.89
    72279 
    72280 > ui mousemode right "translate selected models"
    72281 
    72282 > view matrix models
    72283 > #210,0.97904,0.19809,0.04735,523.15,-0.20002,0.97897,0.040111,316.32,-0.038409,-0.048742,0.99807,259.68
    72284 
    72285 > ui tool show "Fit in Map"
    72286 
    72287 > fitmap #210 inMap #98
    72288 
    72289 Fit map PflAB_wout_FlgYoverlap.mrc in map 1xPflAB_region.mrc using 78673
    72290 points 
    72291 correlation = 0.9999, correlation about mean = 0.9999, overlap = 42.54 
    72292 steps = 116, shift = 4.67, angle = 3.81 degrees 
    72293  
    72294 Position of PflAB_wout_FlgYoverlap.mrc (#210) relative to 1xPflAB_region.mrc
    72295 (#98) coordinates: 
    72296 Matrix rotation and translation 
    72297 0.99999941 0.00097539 -0.00048027 -0.15166260 
    72298 -0.00097521 0.99999945 0.00038164 0.17245805 
    72299 0.00048065 -0.00038117 0.99999981 -0.04876032 
    72300 Axis -0.33103101 -0.41700049 -0.84648040 
    72301 Axis point 185.12467932 148.96149283 0.00000000 
    72302 Rotation angle (degrees) 0.06601510 
    72303 Shift along axis 0.01956459 
    72304  
    72305 
    72306 > hide #!98 models
    72307 
    72308 > hide #!90 models
    72309 
    72310 > show #!90 models
    72311 
    72312 > hide #!90 models
    72313 
    72314 > hide #!3 models
    72315 
    72316 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    72317 > includeMaps true
    72318 
    72319 > ui tool show "Map Eraser"
    72320 
    72321 > volume erase #210 center 835.67,491,484.11 radius 101.9 outside true
    72322 
    72323 Opened PflAB_wout_FlgYoverlap.mrc copy as #212, grid size 200,200,200, pixel
    72324 2.14, shown at step 1, values float32 
    72325 
    72326 > volume erase #212 center 823.89,475.9,348.44 radius 101.86
    72327 
    72328 > volume erase #212 center 801.02,500.32,620.78 radius 101.86
    72329 
    72330 > volume erase #212 center 829.94,495.06,519.59 radius 24.396
    72331 
    72332 > volume erase #212 center 841.94,492.69,530.53 radius 24.396
    72333 
    72334 > volume erase #212 center 827.71,490.99,487.99 radius 14.124
    72335 
    72336 > volume erase #212 center 783.67,459.74,522.55 radius 14.124
    72337 
    72338 > volume erase #212 center 789.67,438.9,515.7 radius 14.124
    72339 
    72340 > volume erase #212 center 755.55,439.13,496.87 radius 14.124
    72341 
    72342 [Repeated 1 time(s)]
    72343 
    72344 > volume erase #212 center 787.55,562.02,481.72 radius 44.512
    72345 
    72346 > volume erase #212 center 728.45,527.69,481.76 radius 44.512
    72347 
    72348 > volume erase #212 center 798.57,566.03,524.86 radius 44.512
    72349 
    72350 > volume erase #212 center 929.77,486.91,451.38 radius 44.512
    72351 
    72352 > volume erase #212 center 903.46,411.82,475.64 radius 44.512
    72353 
    72354 > volume erase #212 center 878.86,414.21,523.76 radius 44.512
    72355 
    72356 > volume erase #212 center 843.04,448.66,511.91 radius 14.124
    72357 
    72358 > volume erase #212 center 809.36,484.73,510.77 radius 14.124
    72359 
    72360 > volume erase #212 center 845.37,512.41,449.17 radius 14.124
    72361 
    72362 [Repeated 1 time(s)]
    72363 
    72364 > hide #211 models
    72365 
    72366 > show #!210 models
    72367 
    72368 > hide #!210 models
    72369 
    72370 > select subtract #210
    72371 
    72372 Nothing selected 
    72373 
    72374 > view orient
    72375 
    72376 > show #!3 models
    72377 
    72378 > view orient
    72379 
    72380 > turn z 21.176471 models #212 center #3
    72381 
    72382 > volume copy #212
    72383 
    72384 Opened PflAB_wout_FlgYoverlap.mrc copy as #213, grid size 200,200,200, pixel
    72385 2.14, shown at step 1, values float32 
    72386 
    72387 > volume #212 show
    72388 
    72389 > turn z 21.176471 models #212 center #3
    72390 
    72391 > volume copy #212
    72392 
    72393 Opened PflAB_wout_FlgYoverlap.mrc copy as #214, grid size 200,200,200, pixel
    72394 2.14, shown at step 1, values float32 
    72395 
    72396 > volume #212 show
    72397 
    72398 > turn z 21.176471 models #212 center #3
    72399 
    72400 > volume copy #212
    72401 
    72402 Opened PflAB_wout_FlgYoverlap.mrc copy as #215, grid size 200,200,200, pixel
    72403 2.14, shown at step 1, values float32 
    72404 
    72405 > volume #212 show
    72406 
    72407 > turn z 21.176471 models #212 center #3
    72408 
    72409 > volume copy #212
    72410 
    72411 Opened PflAB_wout_FlgYoverlap.mrc copy as #216, grid size 200,200,200, pixel
    72412 2.14, shown at step 1, values float32 
    72413 
    72414 > volume #212 show
    72415 
    72416 > turn z 21.176471 models #212 center #3
    72417 
    72418 > volume copy #212
    72419 
    72420 Opened PflAB_wout_FlgYoverlap.mrc copy as #217, grid size 200,200,200, pixel
    72421 2.14, shown at step 1, values float32 
    72422 
    72423 > volume #212 show
    72424 
    72425 > turn z 21.176471 models #212 center #3
    72426 
    72427 > volume copy #212
    72428 
    72429 Opened PflAB_wout_FlgYoverlap.mrc copy as #218, grid size 200,200,200, pixel
    72430 2.14, shown at step 1, values float32 
    72431 
    72432 > volume #212 show
    72433 
    72434 > turn z 21.176471 models #212 center #3
    72435 
    72436 > volume copy #212
    72437 
    72438 Opened PflAB_wout_FlgYoverlap.mrc copy as #219, grid size 200,200,200, pixel
    72439 2.14, shown at step 1, values float32 
    72440 
    72441 > volume #212 show
    72442 
    72443 > turn z 21.176471 models #212 center #3
    72444 
    72445 > volume copy #212
    72446 
    72447 Opened PflAB_wout_FlgYoverlap.mrc copy as #220, grid size 200,200,200, pixel
    72448 2.14, shown at step 1, values float32 
    72449 
    72450 > volume #212 show
    72451 
    72452 > turn z 21.176471 models #212 center #3
    72453 
    72454 > volume copy #212
    72455 
    72456 Opened PflAB_wout_FlgYoverlap.mrc copy as #221, grid size 200,200,200, pixel
    72457 2.14, shown at step 1, values float32 
    72458 
    72459 > volume #212 show
    72460 
    72461 > turn z 21.176471 models #212 center #3
    72462 
    72463 > volume copy #212
    72464 
    72465 Opened PflAB_wout_FlgYoverlap.mrc copy as #222, grid size 200,200,200, pixel
    72466 2.14, shown at step 1, values float32 
    72467 
    72468 > volume #212 show
    72469 
    72470 > turn z 21.176471 models #212 center #3
    72471 
    72472 > volume copy #212
    72473 
    72474 Opened PflAB_wout_FlgYoverlap.mrc copy as #223, grid size 200,200,200, pixel
    72475 2.14, shown at step 1, values float32 
    72476 
    72477 > volume #212 show
    72478 
    72479 > turn z 21.176471 models #212 center #3
    72480 
    72481 > volume copy #212
    72482 
    72483 Opened PflAB_wout_FlgYoverlap.mrc copy as #224, grid size 200,200,200, pixel
    72484 2.14, shown at step 1, values float32 
    72485 
    72486 > volume #212 show
    72487 
    72488 > turn z 21.176471 models #212 center #3
    72489 
    72490 > volume copy #212
    72491 
    72492 Opened PflAB_wout_FlgYoverlap.mrc copy as #225, grid size 200,200,200, pixel
    72493 2.14, shown at step 1, values float32 
    72494 
    72495 > volume #212 show
    72496 
    72497 > turn z 21.176471 models #212 center #3
    72498 
    72499 > volume copy #212
    72500 
    72501 Opened PflAB_wout_FlgYoverlap.mrc copy as #226, grid size 200,200,200, pixel
    72502 2.14, shown at step 1, values float32 
    72503 
    72504 > volume #212 show
    72505 
    72506 > turn z 21.176471 models #212 center #3
    72507 
    72508 > volume copy #212
    72509 
    72510 Opened PflAB_wout_FlgYoverlap.mrc copy as #227, grid size 200,200,200, pixel
    72511 2.14, shown at step 1, values float32 
    72512 
    72513 > volume #212 show
    72514 
    72515 > turn z 21.176471 models #212 center #3
    72516 
    72517 > volume copy #212
    72518 
    72519 Opened PflAB_wout_FlgYoverlap.mrc copy as #228, grid size 200,200,200, pixel
    72520 2.14, shown at step 1, values float32 
    72521 
    72522 > volume #212 show
    72523 
    72524 > turn z 21.176471 models #212 center #3
    72525 
    72526 > volume copy #212
    72527 
    72528 Opened PflAB_wout_FlgYoverlap.mrc copy as #229, grid size 200,200,200, pixel
    72529 2.14, shown at step 1, values float32 
    72530 
    72531 > volume #212 show
    72532 
    72533 > show #!90 models
    72534 
    72535 > surface dust #3 size 43
    72536 
    72537 > surface dust #90 size 21.4
    72538 
    72539 > surface dust #212 size 21.4
    72540 
    72541 > surface dust #213 size 21.4
    72542 
    72543 > surface dust #214 size 21.4
    72544 
    72545 > surface dust #215 size 21.4
    72546 
    72547 > surface dust #216 size 21.4
    72548 
    72549 > surface dust #217 size 21.4
    72550 
    72551 > surface dust #218 size 21.4
    72552 
    72553 > surface dust #219 size 21.4
    72554 
    72555 > surface dust #220 size 21.4
    72556 
    72557 > surface dust #221 size 21.4
    72558 
    72559 > surface dust #222 size 21.4
    72560 
    72561 > surface dust #223 size 21.4
    72562 
    72563 > surface dust #224 size 21.4
    72564 
    72565 > surface dust #225 size 21.4
    72566 
    72567 > surface dust #226 size 21.4
    72568 
    72569 > surface dust #227 size 21.4
    72570 
    72571 > surface dust #228 size 21.4
    72572 
    72573 > surface dust #229 size 21.4
    72574 
    72575 > close #213-229
    72576 
    72577 > volume gaussian #212 sDev 2
    72578 
    72579 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian as #213, grid size
    72580 200,200,200, pixel 2.14, shown at step 1, values float32 
    72581 
    72582 > volume #213 level 0.000211
    72583 
    72584 > close #213
    72585 
    72586 > volume gaussian #212 sDev 1.5
    72587 
    72588 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian as #213, grid size
    72589 200,200,200, pixel 2.14, shown at step 1, values float32 
    72590 
    72591 > volume #213 level 0.0002265
    72592 
    72593 > surface dust #3 size 43
    72594 
    72595 > surface dust #90 size 21.4
    72596 
    72597 > surface dust #213 size 21.4
    72598 
    72599 > view orient
    72600 
    72601 > turn z 21.176471 models #213 center #3
    72602 
    72603 > volume copy #213
    72604 
    72605 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    72606 200,200,200, pixel 2.14, shown at step 1, values float32 
    72607 
    72608 > volume #213 show
    72609 
    72610 > turn z 21.176471 models #213 center #3
    72611 
    72612 > volume copy #213
    72613 
    72614 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    72615 200,200,200, pixel 2.14, shown at step 1, values float32 
    72616 
    72617 > volume #213 show
    72618 
    72619 > turn z 21.176471 models #213 center #3
    72620 
    72621 > volume copy #213
    72622 
    72623 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    72624 200,200,200, pixel 2.14, shown at step 1, values float32 
    72625 
    72626 > volume #213 show
    72627 
    72628 > turn z 21.176471 models #213 center #3
    72629 
    72630 > volume copy #213
    72631 
    72632 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    72633 200,200,200, pixel 2.14, shown at step 1, values float32 
    72634 
    72635 > volume #213 show
    72636 
    72637 > turn z 21.176471 models #213 center #3
    72638 
    72639 > volume copy #213
    72640 
    72641 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    72642 200,200,200, pixel 2.14, shown at step 1, values float32 
    72643 
    72644 > volume #213 show
    72645 
    72646 > turn z 21.176471 models #213 center #3
    72647 
    72648 > volume copy #213
    72649 
    72650 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    72651 200,200,200, pixel 2.14, shown at step 1, values float32 
    72652 
    72653 > volume #213 show
    72654 
    72655 > turn z 21.176471 models #213 center #3
    72656 
    72657 > volume copy #213
    72658 
    72659 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    72660 200,200,200, pixel 2.14, shown at step 1, values float32 
    72661 
    72662 > volume #213 show
    72663 
    72664 > turn z 21.176471 models #213 center #3
    72665 
    72666 > volume copy #213
    72667 
    72668 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    72669 200,200,200, pixel 2.14, shown at step 1, values float32 
    72670 
    72671 > volume #213 show
    72672 
    72673 > turn z 21.176471 models #213 center #3
    72674 
    72675 > volume copy #213
    72676 
    72677 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    72678 200,200,200, pixel 2.14, shown at step 1, values float32 
    72679 
    72680 > volume #213 show
    72681 
    72682 > turn z 21.176471 models #213 center #3
    72683 
    72684 > volume copy #213
    72685 
    72686 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    72687 200,200,200, pixel 2.14, shown at step 1, values float32 
    72688 
    72689 > volume #213 show
    72690 
    72691 > turn z 21.176471 models #213 center #3
    72692 
    72693 > volume copy #213
    72694 
    72695 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    72696 200,200,200, pixel 2.14, shown at step 1, values float32 
    72697 
    72698 > volume #213 show
    72699 
    72700 > turn z 21.176471 models #213 center #3
    72701 
    72702 > volume copy #213
    72703 
    72704 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    72705 200,200,200, pixel 2.14, shown at step 1, values float32 
    72706 
    72707 > volume #213 show
    72708 
    72709 > turn z 21.176471 models #213 center #3
    72710 
    72711 > volume copy #213
    72712 
    72713 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    72714 200,200,200, pixel 2.14, shown at step 1, values float32 
    72715 
    72716 > volume #213 show
    72717 
    72718 > turn z 21.176471 models #213 center #3
    72719 
    72720 > volume copy #213
    72721 
    72722 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    72723 200,200,200, pixel 2.14, shown at step 1, values float32 
    72724 
    72725 > volume #213 show
    72726 
    72727 > turn z 21.176471 models #213 center #3
    72728 
    72729 > volume copy #213
    72730 
    72731 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    72732 200,200,200, pixel 2.14, shown at step 1, values float32 
    72733 
    72734 > volume #213 show
    72735 
    72736 > turn z 21.176471 models #213 center #3
    72737 
    72738 > volume copy #213
    72739 
    72740 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    72741 200,200,200, pixel 2.14, shown at step 1, values float32 
    72742 
    72743 > volume #213 show
    72744 
    72745 > turn z 21.176471 models #213 center #3
    72746 
    72747 > volume copy #213
    72748 
    72749 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    72750 200,200,200, pixel 2.14, shown at step 1, values float32 
    72751 
    72752 > volume #213 show
    72753 
    72754 > surface dust #213-230 size 58.49
    72755 
    72756 > surface dust #213-230 size 70.49
    72757 
    72758 > surface dust #213-230 size 90.49
    72759 
    72760 > volume #228 level 0.0004499
    72761 
    72762 > volume #213-230 level 0.0004499
    72763 
    72764 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    72765 > includeMaps true
    72766 
    72767 > volume #90 level 0.01875
    72768 
    72769 > volume #90 level 0.01518
    72770 
    72771 > volume #90 level 0.02124
    72772 
    72773 > volume #90 level 0.02053
    72774 
    72775 > volume gaussian #90 sDev 1.5
    72776 
    72777 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    72778 shown at step 1, values float32 
    72779 
    72780 > close #231
    72781 
    72782 > volume #90 level 0.01518
    72783 
    72784 > volume gaussian #90 sDev 1
    72785 
    72786 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    72787 shown at step 1, values float32 
    72788 
    72789 > close #231
    72790 
    72791 > volume gaussian #90 sDev 1.5
    72792 
    72793 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    72794 shown at step 1, values float32 
    72795 
    72796 > volume #231 level 0.01124
    72797 
    72798 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    72799 > includeMaps true
    72800 
    72801 > show #!91 models
    72802 
    72803 > volume #91 level 0.001924
    72804 
    72805 > hide #!213 models
    72806 
    72807 > hide #!213-231 models
    72808 
    72809 > ui tool show "Segment Map"
    72810 
    72811 Segmenting MS-ring_New.mrc, density threshold 0.001924 
    72812 Showing 111 region surfaces 
    72813 5377 watershed regions, grouped to 111 regions 
    72814 Showing MS-ring_New.seg - 111 regions, 111 surfaces 
    72815 
    72816 > select add #102
    72817 
    72818 112 models selected 
    72819 
    72820 > ui mousemode right "translate selected models"
    72821 
    72822 > view matrix models #102,1,0,0,134.06,0,1,0,22.057,0,0,1,235.23
    72823 
    72824 > view matrix models #102,1,0,0,216.74,0,1,0,265.66,0,0,1,164.2
    72825 
    72826 > view matrix models #102,1,0,0,61,0,1,0,246.94,0,0,1,179.32
    72827 
    72828 > view matrix models #102,1,0,0,59.391,0,1,0,246.74,0,0,1,178.18
    72829 
    72830 > hide #!91 models
    72831 
    72832 > show #!91 models
    72833 
    72834 > hide #!91 models
    72835 
    72836 > show #!91 models
    72837 
    72838 > select clear
    72839 
    72840 > select #102.43
    72841 
    72842 1 model selected 
    72843 
    72844 > select add #102.30
    72845 
    72846 2 models selected 
    72847 
    72848 > select #102.43
    72849 
    72850 1 model selected 
    72851 
    72852 > select add #102.60
    72853 
    72854 2 models selected 
    72855 
    72856 > select add #102.22
    72857 
    72858 3 models selected 
    72859 Grouped 3 regions 
    72860 
    72861 > select #102.22
    72862 
    72863 1 model selected 
    72864 Ungrouped to 3 regions 
    72865 
    72866 > select #102.112
    72867 
    72868 1 model selected 
    72869 Ungrouped to 2 regions 
    72870 Ungrouped to 13 regions 
    72871 
    72872 > select subtract #102.114
    72873 
    72874 12 models selected 
    72875 Grouped 12 regions 
    72876 
    72877 > select add #102.60
    72878 
    72879 2 models selected 
    72880 
    72881 > select add #102.30
    72882 
    72883 3 models selected 
    72884 
    72885 > select #102.30
    72886 
    72887 1 model selected 
    72888 Ungrouped to 2 regions 
    72889 
    72890 > select subtract #102.113
    72891 
    72892 1 model selected 
    72893 
    72894 > select #102.113
    72895 
    72896 1 model selected 
    72897 Ungrouped to 9 regions 
    72898 
    72899 > select subtract #102.118
    72900 
    72901 8 models selected 
    72902 Grouped 8 regions 
    72903 
    72904 > select add #102.112
    72905 
    72906 2 models selected 
    72907 
    72908 > select add #102.60
    72909 
    72910 3 models selected 
    72911 
    72912 > select add #102.22
    72913 
    72914 4 models selected 
    72915 
    72916 > select add #102.24
    72917 
    72918 5 models selected 
    72919 Grouped 5 regions 
    72920 
    72921 > select add #102.43
    72922 
    72923 2 models selected 
    72924 
    72925 > select add #102.34
    72926 
    72927 3 models selected 
    72928 
    72929 > select add #102.37
    72930 
    72931 4 models selected 
    72932 Grouped 4 regions 
    72933 
    72934 > select #102.81
    72935 
    72936 1 model selected 
    72937 Ungrouped to 2 regions 
    72938 Ungrouped to 11 regions 
    72939 
    72940 > select subtract #102.117
    72941 
    72942 10 models selected 
    72943 Grouped 10 regions 
    72944 
    72945 > select #102.117
    72946 
    72947 1 model selected 
    72948 Ungrouped to 2 regions 
    72949 
    72950 > select subtract #102.34
    72951 
    72952 1 model selected 
    72953 
    72954 > select add #102.24
    72955 
    72956 2 models selected 
    72957 
    72958 > select add #102.22
    72959 
    72960 3 models selected 
    72961 Grouped 3 regions 
    72962 
    72963 > select #102.114
    72964 
    72965 1 model selected 
    72966 Ungrouped to 3 regions 
    72967 Ungrouped to 0 regions 
    72968 
    72969 > select #102.30
    72970 
    72971 1 model selected 
    72972 
    72973 > select add #102.22
    72974 
    72975 2 models selected 
    72976 
    72977 > select #102.30
    72978 
    72979 1 model selected 
    72980 
    72981 > select #102.74
    72982 
    72983 1 model selected 
    72984 
    72985 > select add #102.18
    72986 
    72987 2 models selected 
    72988 Ungrouped to 5 regions 
    72989 Ungrouped to 39 regions 
    72990 Ungrouped to 113 regions 
    72991 
    72992 > select subtract #102.247
    72993 
    72994 112 models selected 
    72995 
    72996 > select subtract #102.43
    72997 
    72998 111 models selected 
    72999 Grouped 111 regions 
    73000 
    73001 > select #102.129
    73002 
    73003 1 model selected 
    73004 
    73005 > select add #102.130
    73006 
    73007 2 models selected 
    73008 
    73009 > select #102.60
    73010 
    73011 1 model selected 
    73012 
    73013 > select add #102.130
    73014 
    73015 2 models selected 
    73016 
    73017 > select add #102.129
    73018 
    73019 3 models selected 
    73020 
    73021 > select add #102.151
    73022 
    73023 4 models selected 
    73024 Grouped 4 regions 
    73025 
    73026 > select #102.16
    73027 
    73028 1 model selected 
    73029 
    73030 > select #102.80
    73031 
    73032 1 model selected 
    73033 
    73034 > select add #102.60
    73035 
    73036 2 models selected 
    73037 
    73038 > select #102.80
    73039 
    73040 1 model selected 
    73041 
    73042 > select add #102.60
    73043 
    73044 2 models selected 
    73045 Grouped 2 regions 
    73046 
    73047 > select add #102.41
    73048 
    73049 2 models selected 
    73050 
    73051 > select add #102.32
    73052 
    73053 3 models selected 
    73054 
    73055 > select add #102.52
    73056 
    73057 4 models selected 
    73058 
    73059 > select #102.52
    73060 
    73061 1 model selected 
    73062 Ungrouped to 2 regions 
    73063 Ungrouped to 13 regions 
    73064 
    73065 > select subtract #102.81
    73066 
    73067 12 models selected 
    73068 Grouped 12 regions 
    73069 
    73070 > select add #102.82
    73071 
    73072 2 models selected 
    73073 
    73074 > select #102.32
    73075 
    73076 1 model selected 
    73077 
    73078 > select add #102.36
    73079 
    73080 2 models selected 
    73081 
    73082 > select #102.36
    73083 
    73084 1 model selected 
    73085 
    73086 > select #102.36
    73087 
    73088 1 model selected 
    73089 Ungrouped to 2 regions 
    73090 Ungrouped to 17 regions 
    73091 
    73092 > select subtract #102.119
    73093 
    73094 16 models selected 
    73095 Grouped 16 regions 
    73096 
    73097 > select add #102.32
    73098 
    73099 2 models selected 
    73100 
    73101 > select add #102.52
    73102 
    73103 3 models selected 
    73104 
    73105 > select add #102.35
    73106 
    73107 4 models selected 
    73108 
    73109 > select add #102.22
    73110 
    73111 5 models selected 
    73112 Grouped 5 regions 
    73113 
    73114 > select #102.82
    73115 
    73116 1 model selected 
    73117 Ungrouped to 2 regions 
    73118 Ungrouped to 10 regions 
    73119 Ungrouped to 37 regions 
    73120 
    73121 > select #102.52
    73122 
    73123 1 model selected 
    73124 
    73125 > select add #102.22
    73126 
    73127 2 models selected 
    73128 
    73129 > select #102.22
    73130 
    73131 1 model selected 
    73132 
    73133 > select #102.16
    73134 
    73135 1 model selected 
    73136 
    73137 > select add #102.41
    73138 
    73139 2 models selected 
    73140 
    73141 > select #102.41
    73142 
    73143 1 model selected 
    73144 
    73145 > select add #102.22
    73146 
    73147 2 models selected 
    73148 Grouped 2 regions 
    73149 
    73150 > select add #102.60
    73151 
    73152 2 models selected 
    73153 Grouped 2 regions 
    73154 
    73155 > select #102.16
    73156 
    73157 1 model selected 
    73158 Ungrouped to 3 regions 
    73159 Ungrouped to 26 regions 
    73160 Ungrouped to 83 regions 
    73161 
    73162 > select subtract #102.216
    73163 
    73164 82 models selected 
    73165 
    73166 > select subtract #102.217
    73167 
    73168 81 models selected 
    73169 Grouped 81 regions 
    73170 
    73171 > select add #102.22
    73172 
    73173 2 models selected 
    73174 Grouped 2 regions 
    73175 Drag select of 4720, 858 of 940 triangles, 4879, 4874, 4882, 4881, 4936, 4935,
    73176 4934, 4889, 4718, 700 of 764 triangles, 4710, 946 of 1008 triangles, 4876,
    73177 4711, 854 of 896 triangles, 4705, 722 of 756 triangles 
    73178 Grouped 15 regions 
    73179 Opened MS-ring_New_imasked as #211, grid size 256,256,256, pixel 2.14, shown
    73180 at step 1, values float32 
    73181 
    73182 > save "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    73183 > Compositions/Resegment_for-C17_FlgY/MS-ring_New_polished.mrc" models #211
    73184 
    73185 > hide #!102 models
    73186 
    73187 > select add #102
    73188 
    73189 147 models selected 
    73190 
    73191 > select subtract #102
    73192 
    73193 Nothing selected 
    73194 
    73195 > select add #211
    73196 
    73197 2 models selected 
    73198 
    73199 > hide #!91 models
    73200 
    73201 > volume gaussian #211 sDev 2
    73202 
    73203 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    73204 2.14, shown at step 1, values float32 
    73205 
    73206 > close #232
    73207 
    73208 > volume gaussian #211 sDev 1.5
    73209 
    73210 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    73211 2.14, shown at step 1, values float32 
    73212 
    73213 > volume #232 level 0.009738
    73214 
    73215 > save /Users/shoichi/Desktop/For_Composition-maps/Building_Composition.cxs
    73216 > includeMaps true
    73217 
    73218 > select subtract #211
    73219 
    73220 Nothing selected 
    73221 
    73222 > show #!212 models
    73223 
    73224 > show #!212-231 models
    73225 
    73226 > close #211
    73227 
    73228 > hide #!212 models
    73229 
    73230 > show #!212 models
    73231 
    73232 > hide #!230 models
    73233 
    73234 > hide #!229 models
    73235 
    73236 > show #!230 models
    73237 
    73238 > show #!229 models
    73239 
    73240 > hide #!212 models
    73241 
    73242 > hide #!229 models
    73243 
    73244 > show #!229 models
    73245 
    73246 > hide #!213 models
    73247 
    73248 > hide #!230 models
    73249 
    73250 > show #!230 models
    73251 
    73252 > hide #!230 models
    73253 
    73254 > show #!230 models
    73255 
    73256 > hide #!230 models
    73257 
    73258 > hide #!229 models
    73259 
    73260 > hide #!228 models
    73261 
    73262 > show #!230 models
    73263 
    73264 > show #!229 models
    73265 
    73266 > show #!228 models
    73267 
    73268 > hide #!214 models
    73269 
    73270 > show #!214 models
    73271 
    73272 > hide #!214 models
    73273 
    73274 > show #!214 models
    73275 
    73276 > hide #!214 models
    73277 
    73278 > hide #!230 models
    73279 
    73280 > show #!230 models
    73281 
    73282 > hide #!215 models
    73283 
    73284 > show #!215 models
    73285 
    73286 > show #!214 models
    73287 
    73288 > show #!213 models
    73289 
    73290 > close #213
    73291 
    73292 > show #!212 models
    73293 
    73294 > hide #!212 models
    73295 
    73296 > show #!212 models
    73297 
    73298 > hide #!212 models
    73299 
    73300 > close #212
    73301 
    73302 > show #!210 models
    73303 
    73304 > hide #!210 models
    73305 
    73306 > close #210
    73307 
    73308 > show #!209 models
    73309 
    73310 > show #!192-208 models
    73311 
    73312 > hide #!209 models
    73313 
    73314 > hide #!192 models
    73315 
    73316 > show #!192 models
    73317 
    73318 > hide #!208 models
    73319 
    73320 > show #!208 models
    73321 
    73322 > show #!209 models
    73323 
    73324 > hide #!209 models
    73325 
    73326 > close #209
    73327 
    73328 > show #!175-191 models
    73329 
    73330 > hide #!175 models
    73331 
    73332 > hide #!191 models
    73333 
    73334 > show #!191 models
    73335 
    73336 > show #!175 models
    73337 
    73338 > show #!168-174 models
    73339 
    73340 > show #!158-174 models
    73341 
    73342 > hide #!158 models
    73343 
    73344 > show #!158 models
    73345 
    73346 > hide #!174 models
    73347 
    73348 > show #!174 models
    73349 
    73350 > show #!141-157 models
    73351 
    73352 > hide #!141 models
    73353 
    73354 > show #!141 models
    73355 
    73356 > hide #!157 models
    73357 
    73358 > show #!157 models
    73359 
    73360 > hide #!141 models
    73361 
    73362 > show #!141 models
    73363 
    73364 > show #!124 models
    73365 
    73366 > show #!140 models
    73367 
    73368 > show #!125-139 models
    73369 
    73370 > show #!107 models
    73371 
    73372 > show #!123 models
    73373 
    73374 > show #!108-122 models
    73375 
    73376 > show #!79 models
    73377 
    73378 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    73379 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    73380 > review/Updated_Figures/07252025/Original-map-deposit/Seg/Basal_disk.mrc"
    73381 
    73382 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    73383 level 0.128, step 1, values float32 
    73384 
    73385 > volume #209 level 0.1571
    73386 
    73387 > close #79
    73388 
    73389 > color #209 #797979ff models
    73390 
    73391 > close #4-76
    73392 
    73393 > show #!80 models
    73394 
    73395 > show #!77 models
    73396 
    73397 > hide #!77 models
    73398 
    73399 > show #!82 models
    73400 
    73401 > hide #!82 models
    73402 
    73403 > show #!82 models
    73404 
    73405 > close #81
    73406 
    73407 > close #78
    73408 
    73409 > show #!77 models
    73410 
    73411 > show #!83 models
    73412 
    73413 > close #84-86
    73414 
    73415 > show #!87 models
    73416 
    73417 > hide #!87 models
    73418 
    73419 > show #!88 models
    73420 
    73421 > hide #!88 models
    73422 
    73423 > show #!90 models
    73424 
    73425 > close #90-106
    73426 
    73427 > show #!88 models
    73428 
    73429 > show #!89 models
    73430 
    73431 > color #88 #70887aff models
    73432 
    73433 > color #89 #70887aff models
    73434 
    73435 > save /Users/shoichi/Desktop/For_Composition-
    73436 > maps/Cleanup_Building_Composition.cxs includeMaps true
    73437 
    73438 ——— End of log from Tue Sep 9 13:34:58 2025 ———
    73439 
    73440 opened ChimeraX session 
    73441 
    73442 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    73443 > Compositions/WT_Deposited_Maps/C-Vrings.mrc"
    73444 
    73445 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    73446 0.0283, step 1, values float32 
    73447 
    73448 > open "/Users/shoichi/Desktop/For_Composition-maps/Segmented for
    73449 > Compositions/WT_Deposited_Maps/C-Vrings.mrc"
    73450 
    73451 Opened C-Vrings.mrc as #5, grid size 250,250,250, pixel 4.3, shown at level
    73452 0.0283, step 1, values float32 
    73453 
    73454 > hide #!80 models
    73455 
    73456 > hide #!3 models
    73457 
    73458 > show #!3 models
    73459 
    73460 > hide #!4 models
    73461 
    73462 > hide #!5 models
    73463 
    73464 > hide #!77 models
    73465 
    73466 > show #!77 models
    73467 
    73468 > close #77
    73469 
    73470 > show #!4 models
    73471 
    73472 > close #5,80
    73473 
    73474 > close #2
    73475 
    73476 > show #!1 models
    73477 
    73478 > hide #!1 models
    73479 
    73480 > show #!1 models
    73481 
    73482 > hide #!1 models
    73483 
    73484 > hide #!107 models
    73485 
    73486 > color #4 #797979ff models
    73487 
    73488 > hide #!107-232 models
    73489 
    73490 > hide #!89 models
    73491 
    73492 > hide #!83 models
    73493 
    73494 > hide #!82 models
    73495 
    73496 > hide #!4 models
    73497 
    73498 > hide #!3 models
    73499 
    73500 > ui tool show "Map Eraser"
    73501 
    73502 > volume erase #88 center 101.29,313.39,686.09 radius 138.91
    73503 
    73504 > close #2
    73505 
    73506 > show #!107-232 models
    73507 
    73508 > show #!89 models
    73509 
    73510 > show #!3 models
    73511 
    73512 > show #!4 models
    73513 
    73514 > show #!82 models
    73515 
    73516 > save /Users/shoichi/Desktop/For_Composition-
    73517 > maps/Cleanup_Building_Composition.cxs includeMaps true
    73518 
    73519 > view orient
    73520 
    73521 > turn x 90
    73522 
    73523 [Repeated 2 time(s)]
    73524 
    73525 > color #158-174 #7b80ffff models
    73526 
    73527 > color #141-157 #adffc1ff models
    73528 
    73529 > color #107-123 #0b6dffff models
    73530 
    73531 > view orient
    73532 
    73533 > ui tool show "Side View"
    73534 
    73535 > color #214-230 #ff0002ff models
    73536 
    73537 > color #231 #dbb3e2ff models
    73538 
    73539 > color #232 #348e42ff models
    73540 
    73541 > color #175-191 #e2cf7bff models
    73542 
    73543 > color #192-208 #a69b32ff models
    73544 
    73545 > color #124-140 #be41c5ff models
    73546 
    73547 > color #124-140 #b86006ff models
    73548 
    73549 > save /Users/shoichi/Desktop/For_Composition-
    73550 > maps/Cleanup_Building_Composition.cxs includeMaps true
    73551 
    73552 > hide #!4 models
    73553 
    73554 > hide #!4-209 models
    73555 
    73556 > hide #!231 models
    73557 
    73558 > hide #!232 models
    73559 
    73560 > ui tool show "Surface Color"
    73561 
    73562 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    73563 
    73564 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff center
    73565 > 821.11,612.79,486.31
    73566 
    73567 Surface Color: could not parse center "0" as 3 numbers 
    73568 
    73569 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    73570 
    73571 Surface Color: could not parse center "0" as 3 numbers 
    73572 
    73573 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    73574 
    73575 Surface Color: could not parse center "0" as 3 numbers 
    73576 
    73577 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff
    73578 
    73579 Surface Color: could not parse center "0" as 3 numbers 
    73580 
    73581 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff
    73582 
    73583 > color radial #214.1 palette 337.7,#ff0000:429.9,#ffffff:522,#0000ff center
    73584 > 821.11,612.79,486.31
    73585 
    73586 > color radial #214.1 palette 137.7,#ff0000:429.9,#ffffff:522,#0000ff center
    73587 > 821.11,612.79,486.31
    73588 
    73589 [Repeated 1 time(s)]
    73590 
    73591 > color radial #214.1 palette 137.7,#ff0000:129.9,#ffffff:122,#0000ff center
    73592 > 821.11,612.79,486.31
    73593 
    73594 Surface Color: could not parse center "" as 3 numbers 
    73595 
    73596 > color radial #214.1 palette 137.7,#ff0000:129.9,#ffffff:122,#0000ff
    73597 
    73598 Surface Color: could not parse center "" as 3 numbers 
    73599 
    73600 > color radial #214.1 palette 137.7,#ff0000:129.9,#ffffff:122,#0000ff
    73601 
    73602 Surface Color: could not parse center "" as 3 numbers 
    73603 
    73604 > color radial #214.1 palette 17.7,#ff0000:129.9,#ffffff:122,#0000ff
    73605 
    73606 Surface Color: could not parse center "" as 3 numbers 
    73607 
    73608 > color radial #214.1 palette 97.7,#ff0000:129.9,#ffffff:122,#0000ff
    73609 
    73610 Surface Color: could not parse center "" as 3 numbers 
    73611 
    73612 > color radial #214.1 palette 117.7,#ff0000:129.9,#ffffff:122,#0000ff
    73613 
    73614 Surface Color: could not parse center "" as 3 numbers 
    73615 
    73616 > color radial #214.1 palette 117.7,#ff0000:129.9,#ffffff:122,#0000ff
    73617 
    73618 Surface Color: could not parse center "" as 3 numbers 
    73619 
    73620 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    73621 
    73622 Surface Color: could not parse center "" as 3 numbers 
    73623 
    73624 > color radial #214.1 palette #ff0000:#ffffff:#0000ff
    73625 
    73626 Surface Color: could not parse center "" as 3 numbers 
    73627 
    73628 > color radial #214.1 palette #ff0000:#ffffff:#0000ff:#808080:#808080:#808080
    73629 
    73630 Surface Color: could not parse center "" as 3 numbers 
    73631 
    73632 > color radial #214.1 palette
    73633 > 337.7,#ff0000:374.6,#ff0000:411.4,#0000ff:448.3,#808080:485.1,#808080:522,#808080
    73634 
    73635 Surface Color: could not parse center "" as 3 numbers 
    73636 
    73637 > color radial #214.1 palette
    73638 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73639 
    73640 Surface Color: could not parse center "" as 3 numbers 
    73641 
    73642 > color radial #214.1 palette
    73643 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73644 
    73645 Surface Color: could not parse center "" as 3 numbers 
    73646 
    73647 > color cylindrical #214.1 palette
    73648 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73649 
    73650 Surface Color: could not parse center "" as 3 numbers 
    73651 
    73652 > color radial #214.1 palette
    73653 > 337.7,#ff0000:374.6,#ff0000:411.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73654 
    73655 Surface Color: could not parse center "" as 3 numbers 
    73656 
    73657 > color radial #214.1 palette
    73658 > 337.7,#ff0000:374.6,#ff0000:390.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73659 
    73660 Surface Color: could not parse center "" as 3 numbers 
    73661 
    73662 > color radial #214.1 palette
    73663 > 337.7,#ff0000:374.6,#ff0000:400.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73664 
    73665 Surface Color: could not parse center "" as 3 numbers 
    73666 
    73667 > color radial #214.1 palette
    73668 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73669 
    73670 Surface Color: could not parse center "" as 3 numbers 
    73671 
    73672 > color radial #214.1 palette
    73673 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#808080:485.1,#808080:522,#808080
    73674 
    73675 Surface Color: could not parse center "" as 3 numbers 
    73676 
    73677 > color radial #214.1 palette
    73678 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#923e6f:485.1,#808080:522,#808080
    73679 
    73680 Surface Color: could not parse center "" as 3 numbers 
    73681 
    73682 > color radial #214.1 palette
    73683 > 337.7,#ff0000:374.6,#ff0000:410.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    73684 
    73685 Surface Color: could not parse center "" as 3 numbers 
    73686 
    73687 > color radial #214.1 palette
    73688 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    73689 
    73690 Surface Color: could not parse center "" as 3 numbers 
    73691 
    73692 > color radial #214.1 palette
    73693 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    73694 
    73695 > color radial #214.1 palette
    73696 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    73697 > center 614.38,336.59,237.88
    73698 
    73699 [Repeated 2 time(s)]
    73700 
    73701 > color radial #214.1 palette
    73702 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f:485.1,#ff40ff:522,#ff40ff
    73703 > center 537.21,536.85,714.3
    73704 
    73705 > color radial #214.1 palette
    73706 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff0000:448.3,#923e6f center
    73707 > 537.21,536.85,714.3
    73708 
    73709 [Repeated 1 time(s)]
    73710 
    73711 > color radial #214.1 palette
    73712 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73713 > 537.21,536.85,714.3
    73714 
    73715 > color cylindrical #214.1 palette
    73716 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73717 > 537.21,536.85,714.3
    73718 
    73719 > color cylindrical #214.1 palette
    73720 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73721 > 537.21,536.85,714.3 axis 0,0,0
    73722 
    73723 > color cylindrical #214.1 palette
    73724 > 337.7,#ff0000:374.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73725 > 537.21,536.85,714.3 axis 0,0,-1
    73726 
    73727 > color cylindrical #214.1 palette
    73728 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73729 > 537.21,536.85,714.3 axis 0,0,-1
    73730 
    73731 > color cylindrical #214.1 palette
    73732 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73733 > 537.21,536.85,714.3 axis 0,-1,-1
    73734 
    73735 > color cylindrical #214.1 palette
    73736 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73737 > 537.21,536.85,714.3 axis 0,-0.5,-1
    73738 
    73739 > color cylindrical #214.1 palette
    73740 > 337.7,#ff0000:354.6,#ff0000:405.4,#ff40ff:448.3,#923e6f center
    73741 > 537.21,536.85,714.3 axis 0,1,-1
    73742 
    73743 > color cylindrical #214.1 palette
    73744 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    73745 > 537.21,536.85,714.3 axis 0,1,-1
    73746 
    73747 > color radial #214.1 palette
    73748 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    73749 > 537.21,536.85,714.3
    73750 
    73751 [Repeated 2 time(s)]
    73752 
    73753 > color radial #214.1 palette
    73754 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    73755 > 821.11,612.79,486.31
    73756 
    73757 > show #!232 models
    73758 
    73759 > color radial #214.1 palette
    73760 > 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff:448.3,#923e6f center
    73761 > 536.27,535.94,464.54
    73762 
    73763 > color radial #214.1 palette 337.7,#ff0000:354.6,#ff0000:415.4,#ff40ff center
    73764 > 536.27,535.94,464.54
    73765 
    73766 [Repeated 1 time(s)]
    73767 
    73768 > color radial #214.1 palette 137.7,#ff0000:354.6,#ff0000:415.4,#ff40ff center
    73769 > 536.27,535.94,464.54
    73770 
    73771 [Repeated 1 time(s)]
    73772 
    73773 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:415.4,#ff40ff center
    73774 > 536.27,535.94,464.54
    73775 
    73776 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:315.4,#ff40ff center
    73777 > 536.27,535.94,464.54
    73778 
    73779 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:215.4,#ff40ff center
    73780 > 536.27,535.94,464.54
    73781 
    73782 > color radial #214.1 palette 137.7,#ff0000:254.6,#ff0000:315.4,#ff40ff center
    73783 > 536.27,535.94,464.54
    73784 
    73785 > color radial #214.1 palette 137.7,#ff0000:354.6,#ff0000:315.4,#ff40ff center
    73786 > 536.27,535.94,464.54
    73787 
    73788 > color radial #214.1 palette 137.7,#ff0000:554.6,#ff0000:315.4,#ff40ff center
    73789 > 536.27,535.94,464.54
    73790 
    73791 > color radial #214.1 palette 137.7,#ff0000:554.6,#ff40ff center
    73792 > 536.27,535.94,464.54
    73793 
    73794 > key red:138 #ff40ff:555 showTool true
    73795 
    73796 > ui mousemode right "color key"
    73797 
    73798 > key red:138 #ff40ff:555 showTool true
    73799 
    73800 > close #2
    73801 
    73802 > ui mousemode right "map eraser"
    73803 
    73804 > close #2
    73805 
    73806 > color radial #214.1 palette 137.7,#ff0000:554.6,#ff40ff center
    73807 > 536.27,535.94,464.54
    73808 
    73809 > color radial #214.1 palette #ff0000:#ff40ff center 536.27,535.94,464.54
    73810 
    73811 [Repeated 1 time(s)]
    73812 
    73813 > color radial #214.1 palette 213.6,#ff0000:400,#ff0000 center
    73814 > 536.27,535.94,464.54
    73815 
    73816 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff center
    73817 > 536.27,535.94,464.54
    73818 
    73819 > color radial #214.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    73820 > 536.27,535.94,464.54
    73821 
    73822 > color radial #215.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    73823 > 536.27,535.94,464.54
    73824 
    73825 > color radial #216.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    73826 > 536.27,535.94,464.54
    73827 
    73828 > color radial #217.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    73829 > 536.27,535.94,464.54
    73830 
    73831 > color radial #2178.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    73832 > 536.27,535.94,464.54
    73833 
    73834 > color radial #2179.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    73835 > 536.27,535.94,464.54
    73836 
    73837 > color radial #21710.1 palette 213.6,#ff0000:306.8,#ff0000:350,#ff40ff center
    73838 > 536.27,535.94,464.54
    73839 
    73840 > view orient
    73841 
    73842 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff:#923e6f center
    73843 > 536.27,535.94,464.54
    73844 
    73845 > color radial #214.1 palette
    73846 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#923e6f center
    73847 > 536.27,535.94,464.54
    73848 
    73849 [Repeated 1 time(s)]
    73850 
    73851 > color radial #214.1 palette
    73852 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    73853 > 536.27,535.94,464.54
    73854 
    73855 [Repeated 2 time(s)]
    73856 
    73857 > color radial #214.1 palette
    73858 > 213.6,#ff0000:205.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    73859 > 536.27,535.94,464.54
    73860 
    73861 [Repeated 1 time(s)]
    73862 
    73863 > color radial #214.1 palette
    73864 > 213.6,#ff0000:255.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    73865 > 536.27,535.94,464.54
    73866 
    73867 > color radial #214.1 palette
    73868 > 213.6,#ff0000:285.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    73869 > 536.27,535.94,464.54
    73870 
    73871 > hide #!215 models
    73872 
    73873 > hide #!216 models
    73874 
    73875 > hide #!217 models
    73876 
    73877 > hide #!218 models
    73878 
    73879 > color radial #214.1 palette
    73880 > 213.6,#ff0000:285.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    73881 > 536.27,535.94,464.54
    73882 
    73883 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff center
    73884 > 536.27,535.94,464.54
    73885 
    73886 > color radial #214.1 palette
    73887 > 213.6,#ff0000:260.2,#ff0000:306.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    73888 > 536.27,535.94,464.54
    73889 
    73890 > color radial #214.1 palette
    73891 > 213.6,#ff0000:260.2,#ff0000:296.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    73892 > 536.27,535.94,464.54
    73893 
    73894 > color radial #214.1 palette
    73895 > 213.6,#ff0000:260.2,#ff0000:270.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    73896 > 536.27,535.94,464.54
    73897 
    73898 > color radial #214.1 palette
    73899 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:353.4,#ff40ff:400,#ff40ff center
    73900 > 536.27,535.94,464.54
    73901 
    73902 > color radial #214.1 palette
    73903 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:373.4,#ff40ff:400,#ff40ff center
    73904 > 536.27,535.94,464.54
    73905 
    73906 > color radial #214.1 palette
    73907 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:373.4,#ff40ff:400,#ff40ff center
    73908 > 536.27,535.94,364.54
    73909 
    73910 > color radial #214.1 palette
    73911 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:303.4,#ff40ff:400,#ff40ff center
    73912 > 536.27,535.94,364.54
    73913 
    73914 > color radial #214.1 palette
    73915 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    73916 > 536.27,535.94,364.54
    73917 
    73918 > color radial #214.1 palette
    73919 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    73920 > 536.27,535.94,304.54
    73921 
    73922 > color radial #214.1 palette
    73923 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    73924 > 536.27,535.94,394.54
    73925 
    73926 > color radial #214.1 palette
    73927 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#f82288:400,#ff40ff center
    73928 > 536.27,535.94,394.54
    73929 
    73930 [Repeated 1 time(s)]
    73931 
    73932 > color radial #214.1 palette
    73933 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#f82288:400,#ff40ff center
    73934 > 536.27,535.94,404.54
    73935 
    73936 [Repeated 1 time(s)]
    73937 
    73938 > color radial #214.1 palette
    73939 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73940 > 536.27,535.94,404.54
    73941 
    73942 [Repeated 1 time(s)]
    73943 
    73944 > color radial #214.1 palette
    73945 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73946 > 536.27,435.94,404.54
    73947 
    73948 > color radial #214.1 palette
    73949 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73950 > 536.27,635.94,404.54
    73951 
    73952 > color radial #214.1 palette
    73953 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73954 > 536.27,535.94,404.54
    73955 
    73956 > color radial #214.1 palette
    73957 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73958 > 436.27,535.94,404.54
    73959 
    73960 > color radial #214.1 palette
    73961 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73962 > 536.27,535.94,404.54
    73963 
    73964 > color radial #214.1 palette
    73965 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73966 > 636.27,535.94,404.54
    73967 
    73968 > color radial #214.1 palette
    73969 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73970 > 586.27,535.94,404.54
    73971 
    73972 > color radial #214.1 palette
    73973 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73974 > 556.27,535.94,404.54
    73975 
    73976 > color radial #214.1 palette
    73977 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73978 > 546.27,535.94,404.54
    73979 
    73980 > color radial #214.1 palette
    73981 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73982 > 536.27,535.94,404.54
    73983 
    73984 > color radial #214.1 palette
    73985 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73986 > 526.27,535.94,404.54
    73987 
    73988 > color radial #214.1 palette
    73989 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73990 > 520.27,535.94,404.54
    73991 
    73992 > color radial #214.1 palette
    73993 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73994 > 510.27,535.94,404.54
    73995 
    73996 > color radial #214.1 palette
    73997 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    73998 > 520.27,535.94,404.54
    73999 
    74000 > color radial #214.1 palette
    74001 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    74002 > 520.27,525.94,404.54
    74003 
    74004 > color radial #214.1 palette
    74005 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    74006 > 520.27,545.94,404.54
    74007 
    74008 > color radial #214.1 palette
    74009 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    74010 > 520.27,555.94,404.54
    74011 
    74012 > color radial #214.1 palette
    74013 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    74014 > 520.27,585.94,404.54
    74015 
    74016 > color radial #214.1 palette
    74017 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    74018 > 520.27,555.94,404.54
    74019 
    74020 > color radial #214.1 palette
    74021 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    74022 > 520.27,525.94,404.54
    74023 
    74024 > color radial #214.1 palette
    74025 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#e926ac:400,#ff40ff center
    74026 > 520.27,545.94,404.54
    74027 
    74028 > color radial #214.1 palette
    74029 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74030 > 520.27,545.94,404.54
    74031 
    74032 [Repeated 1 time(s)]
    74033 
    74034 > color radial #214.1 palette
    74035 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74036 > 520.27,545.94,394.54
    74037 
    74038 [Repeated 1 time(s)]
    74039 
    74040 > color radial #214.1 palette
    74041 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74042 > 520.27,545.94,384.54
    74043 
    74044 > color radial #214.1 palette
    74045 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74046 > 520.27,545.94,304.54
    74047 
    74048 > color radial #214.1 palette
    74049 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74050 > 520.27,545.94,454.54
    74051 
    74052 > color radial #214.1 palette
    74053 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74054 > 520.27,545.94,434.54
    74055 
    74056 > color radial #214.1 palette
    74057 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74058 > 520.27,545.94,424.54
    74059 
    74060 > color radial #214.1 palette
    74061 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74062 > 520.27,545.94,414.54
    74063 
    74064 > color radial #214.1 palette
    74065 > 213.6,#ff0000:270.2,#ff0000:285.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74066 > 520.27,545.94,418.54
    74067 
    74068 > color radial #214.1 palette
    74069 > 213.6,#ff0000:270.2,#ff0000:295.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74070 > 520.27,545.94,418.54
    74071 
    74072 > color radial #214.1 palette
    74073 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74074 > 520.27,545.94,418.54
    74075 
    74076 > color radial #214.1 palette
    74077 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74078 > 520.27,245.94,418.54
    74079 
    74080 > color radial #214.1 palette
    74081 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74082 > 520.27,445.94,418.54
    74083 
    74084 > color radial #214.1 palette
    74085 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74086 > 520.27,545.94,418.54
    74087 
    74088 > color radial #214.1 palette
    74089 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74090 > 520.27,445.94,418.54
    74091 
    74092 > color radial #214.1 palette
    74093 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74094 > 520.27,465.94,418.54
    74095 
    74096 > color radial #214.1 palette
    74097 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74098 > 520.27,435.94,418.54
    74099 
    74100 > color radial #214.1 palette
    74101 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74102 > 420.27,435.94,418.54
    74103 
    74104 > color radial #214.1 palette
    74105 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74106 > 620.27,435.94,418.54
    74107 
    74108 > color radial #214.1 palette
    74109 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74110 > 520.27,435.94,418.54
    74111 
    74112 > color radial #214.1 palette
    74113 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74114 > 525.27,435.94,418.54
    74115 
    74116 > color radial #214.1 palette
    74117 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74118 > 565.27,435.94,418.54
    74119 
    74120 > color radial #214.1 palette
    74121 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74122 > 545.27,435.94,418.54
    74123 
    74124 > color radial #214.1 palette
    74125 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74126 > 540.27,435.94,418.54
    74127 
    74128 > show #!215 models
    74129 
    74130 > show #!216 models
    74131 
    74132 > show #!217 models
    74133 
    74134 > show #!218 models
    74135 
    74136 > color radial #215.1 palette
    74137 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74138 > 540.27,435.94,418.54
    74139 
    74140 > color radial #216.1 palette
    74141 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74142 > 540.27,435.94,418.54
    74143 
    74144 > color radial #217.1 palette
    74145 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:403.4,#ff40ff:400,#ff40ff center
    74146 > 540.27,435.94,418.54
    74147 
    74148 > color radial #217.1 palette
    74149 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    74150 > 540.27,435.94,418.54
    74151 
    74152 > color radial #214.1 palette
    74153 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    74154 > 540.27,435.94,418.54
    74155 
    74156 [Repeated 1 time(s)]
    74157 
    74158 > hide #!215 models
    74159 
    74160 > hide #!216 models
    74161 
    74162 > hide #!217 models
    74163 
    74164 > color radial #214.1 palette
    74165 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    74166 > 540.27,435.94,418.54
    74167 
    74168 > color radial #214.1 palette
    74169 > 213.6,#ff0000:270.2,#ff0000:305.8,#ff0000:400,#ff40ff:403.4,#ff40ff center
    74170 > 536.27,535.94,464.54
    74171 
    74172 > color radial #214.1 palette #ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff
    74173 > center 536.27,535.94,464.54
    74174 
    74175 > color radial #214.1 palette
    74176 > 213.6,#ff0000:250.8,#ff0000:298.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74177 > center 536.27,535.94,464.54
    74178 
    74179 > color radial #214.1 palette
    74180 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74181 > center 536.27,535.94,464.54
    74182 
    74183 [Repeated 1 time(s)]
    74184 
    74185 > color radial #214.1 palette
    74186 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74187 > center 536.27,535.94,564.54
    74188 
    74189 > color radial #214.1 palette
    74190 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74191 > center 536.27,535.94,404.54
    74192 
    74193 > color radial #214.1 palette
    74194 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74195 > center 536.27,535.94,564.54
    74196 
    74197 > color radial #214.1 palette
    74198 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74199 > center 536.27,535.94,594.54
    74200 
    74201 > color radial #214.1 palette
    74202 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74203 > center 536.27,535.94,564.54
    74204 
    74205 > color radial #214.1 palette
    74206 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74207 > center 536.27,535.94,524.54
    74208 
    74209 > color radial #214.1 palette
    74210 > 213.6,#ff0000:250.8,#ff0000:288.1,#ff0000:325.4,#ff40ff:362.7,#ff40ff:400,#ff40ff
    74211 > center 536.27,535.94,464.54
    74212 
    74213 [Repeated 1 time(s)]
    74214 
    74215 > color radial #214.1 palette
    74216 > #ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff:#808080 center
    74217 > 536.27,535.94,464.54
    74218 
    74219 > color radial #214.1 palette
    74220 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#808080
    74221 > center 536.27,535.94,464.54
    74222 
    74223 > color radial #214.1 palette
    74224 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#808080
    74225 > center 536.27,535.94,464.54
    74226 
    74227 > color radial #214.1 palette
    74228 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74229 > center 536.27,535.94,464.54
    74230 
    74231 [Repeated 1 time(s)]
    74232 
    74233 > color radial #214.1 palette
    74234 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74235 > center 764,548,517
    74236 
    74237 > color radial #214.1 palette
    74238 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74239 > center 536.27,535.94,464.54
    74240 
    74241 > color radial #214.1 palette
    74242 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74243 > center 536.27,535.94,464.54
    74244 
    74245 > color cylindrical #214.1 palette
    74246 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74247 > center 536.27,535.94,464.54 axis 0,1,-1
    74248 
    74249 > color cylindrical #214.1 palette
    74250 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74251 > center 536.27,535.94,464.54 axis 0,0,0
    74252 
    74253 > color cylindrical #214.1 palette
    74254 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74255 > center 536.27,535.94,464.54 axis 0,1,0
    74256 
    74257 > color cylindrical #214.1 palette
    74258 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74259 > center 536.27,535.94,464.54 axis 0,-0.1,0
    74260 
    74261 [Repeated 1 time(s)]
    74262 
    74263 > color cylindrical #214.1 palette
    74264 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74265 > center 536.27,535.94,464.54 axis 0,0,0
    74266 
    74267 > color cylindrical #214.1 palette
    74268 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74269 > center 536.27,535.94,464.54 axis 1,0,0
    74270 
    74271 > color cylindrical #214.1 palette
    74272 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74273 > center 536.27,535.94,464.54 axis 0,0,0
    74274 
    74275 > color cylindrical #214.1 palette
    74276 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74277 > center 536.27,535.94,464.54
    74278 
    74279 > color cylindrical #214.1 palette
    74280 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74281 > center 536.27,535.94,464.54 axis 0,0,2
    74282 
    74283 > color cylindrical #214.1 palette
    74284 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74285 > center 536.27,535.94,464.54 axis 0,0,1.5
    74286 
    74287 [Repeated 1 time(s)]
    74288 
    74289 > color cylindrical #214.1 palette
    74290 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74291 > center 536.27,535.94,464.54 axis 0,0,1.1
    74292 
    74293 > color cylindrical #214.1 palette
    74294 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74295 > center 536.27,535.94,464.54
    74296 
    74297 > color cylindrical #214.1 palette
    74298 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74299 > center 536.27,535.94,464.54 axis 1,0,1
    74300 
    74301 > color cylindrical #214.1 palette
    74302 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74303 > center 536.27,535.94,464.54
    74304 
    74305 > color cylindrical #214.1 palette
    74306 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74307 > center 536.27,535.94,464.54 axis 0,0,0
    74308 
    74309 > key red:214 red:245 red:276 red:287 #ff40ff:358 #ff40ff:369 #ff40ff:400
    74310 > showTool true
    74311 
    74312 > ui mousemode right "color key"
    74313 
    74314 > help help:user/tools/surfacecolor.html
    74315 
    74316 > color cylindrical #214.1 palette
    74317 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ed2e81:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74318 > center 536.27,535.94,464.54 axis 0,0,0
    74319 
    74320 [Repeated 1 time(s)]
    74321 
    74322 > color cylindrical #214.1 palette
    74323 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#e13e63:357.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74324 > center 536.27,535.94,464.54 axis 0,0,0
    74325 
    74326 [Repeated 2 time(s)]
    74327 
    74328 > color cylindrical #214.1 palette
    74329 > #ff0000:#ff0000:#ff0000:#e13e63:#ff40ff:#ff40ff:#ff40ff center
    74330 > 536.27,535.94,464.54 axis 0,0,0
    74331 
    74332 [Repeated 1 time(s)]
    74333 
    74334 > color cylindrical #214.1 palette
    74335 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74336 > center 536.27,535.94,464.54 axis 0,0,0
    74337 
    74338 > color radial #214.1 palette
    74339 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74340 > center 536.27,535.94,464.54
    74341 
    74342 [Repeated 2 time(s)]
    74343 
    74344 > color radial #214.1 palette
    74345 > #ff0000:#ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff center
    74346 > 536.27,535.94,464.54
    74347 
    74348 > color radial #214.1 palette
    74349 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74350 > center 536.27,535.94,464.54
    74351 
    74352 [Repeated 1 time(s)]
    74353 
    74354 > color radial #214.1 palette
    74355 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:300.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74356 > center 536.27,535.94,464.54
    74357 
    74358 > color cylindrical #214.1 palette
    74359 > #ff0000:#ff0000:#ff0000:#ff0000:#ff40ff:#ff40ff:#ff40ff center
    74360 > 536.27,535.94,464.54 axis 0,0,0
    74361 
    74362 > color cylindrical #214.1 palette
    74363 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:306.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74364 > center 536.27,535.94,464.54 axis 0,0,0
    74365 
    74366 > color cylindrical #214.1 palette
    74367 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:286.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74368 > center 536.27,535.94,464.54 axis 0,0,0
    74369 
    74370 > color cylindrical #214.1 palette
    74371 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:289.8,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74372 > center 536.27,535.94,464.54 axis 0,0,0
    74373 
    74374 [Repeated 1 time(s)]
    74375 
    74376 > color cylindrical #214.1 palette
    74377 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74378 > center 536.27,535.94,464.54 axis 0,0,0
    74379 
    74380 [Repeated 1 time(s)]
    74381 
    74382 > color cylindrical #214.1 palette
    74383 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:299,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74384 > center 536.27,535.94,464.54 axis 0,0,0
    74385 
    74386 [Repeated 1 time(s)]
    74387 
    74388 > color cylindrical #214.1 palette
    74389 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:310,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74390 > center 536.27,535.94,464.54 axis 0,0,0
    74391 
    74392 > color cylindrical #214.1 palette
    74393 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74394 > center 536.27,535.94,464.54 axis 0,0,0
    74395 
    74396 > color cylindrical #214.1 palette
    74397 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74398 > center 536.27,535.94,464.54 axis 0,0,-1
    74399 
    74400 > color cylindrical #214.1 palette
    74401 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74402 > center 536.27,535.94,464.54
    74403 
    74404 > color cylindrical #214.1 palette
    74405 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74406 > center 536.27,535.94,464.54 axis 0,0,2
    74407 
    74408 > color cylindrical #214.1 palette
    74409 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74410 > center 536.27,535.94,464.54 axis 0,0,3
    74411 
    74412 [Repeated 2 time(s)]
    74413 
    74414 > color cylindrical #214.1 palette
    74415 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74416 > center 536.27,535.94,464.54 axis 0,0,-3
    74417 
    74418 [Repeated 1 time(s)]
    74419 
    74420 > color cylindrical #214.1 palette
    74421 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74422 > center 536.27,535.94,464.54 axis 0,0,-2
    74423 
    74424 [Repeated 1 time(s)]
    74425 
    74426 > color cylindrical #214.1 palette
    74427 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:290,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74428 > center 536.27,535.94,464.54 axis 0,0,0
    74429 
    74430 [Repeated 1 time(s)]
    74431 
    74432 > color cylindrical #214.1 palette
    74433 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74434 > center 536.27,535.94,464.54 axis 0,-2,0
    74435 
    74436 > color cylindrical #214.1 palette
    74437 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74438 > center 536.27,535.94,464.54 axis 0,2,0
    74439 
    74440 [Repeated 2 time(s)]
    74441 
    74442 > color cylindrical #214.1 palette
    74443 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74444 > center 536.27,535.94,464.54 axis 0,4,0
    74445 
    74446 [Repeated 2 time(s)]
    74447 
    74448 > color cylindrical #214.1 palette
    74449 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74450 > center 536.27,535.94,464.54 axis 0,2,0
    74451 
    74452 > color cylindrical #214.1 palette
    74453 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74454 > center 536.27,535.94,464.54 axis 0,5,0
    74455 
    74456 [Repeated 1 time(s)]
    74457 
    74458 > color cylindrical #214.1 palette
    74459 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74460 > center 536.27,535.94,464.54 axis 0,4,0
    74461 
    74462 [Repeated 1 time(s)]
    74463 
    74464 > color cylindrical #214.1 palette
    74465 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74466 > center 536.27,535.94,464.54 axis 0,-2,0
    74467 
    74468 [Repeated 1 time(s)]
    74469 
    74470 > color cylindrical #214.1 palette
    74471 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74472 > center 536.27,535.94,464.54 axis 0,-5,0
    74473 
    74474 > color cylindrical #214.1 palette
    74475 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74476 > center 536.27,535.94,464.54 axis 0,5,0
    74477 
    74478 [Repeated 1 time(s)]
    74479 
    74480 > color cylindrical #214.1 palette
    74481 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74482 > center 536.27,535.94,464.54 axis 0,2,0
    74483 
    74484 [Repeated 4 time(s)]
    74485 
    74486 > color cylindrical #214.1 palette
    74487 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74488 > center 536.27,535.94,464.54 axis 0,0,0
    74489 
    74490 [Repeated 1 time(s)]
    74491 
    74492 > color cylindrical #214.1 palette
    74493 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74494 > center 536.27,535.94,464.54 axis 0,-2,0
    74495 
    74496 > color cylindrical #214.1 palette
    74497 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74498 > center 536.27,535.94,464.54 axis 0,2,0
    74499 
    74500 [Repeated 4 time(s)]
    74501 
    74502 > color cylindrical #214.1 palette
    74503 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74504 > center 536.27,535.94,464.54 axis 0,0,0
    74505 
    74506 > color cylindrical #214.1 palette
    74507 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74508 > center 536.27,535.94,464.54 axis 0,2,0
    74509 
    74510 > color cylindrical #214.1 palette
    74511 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74512 > center 536.27,535.94,464.54 axis 0,0,0
    74513 
    74514 > color cylindrical #214.1 palette
    74515 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74516 > center 536.27,535.94,464.54 axis 0,-2,0
    74517 
    74518 > color cylindrical #214.1 palette
    74519 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74520 > center 536.27,535.94,464.54 axis 0,0,0
    74521 
    74522 > color cylindrical #214.1 palette
    74523 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74524 > center 536.27,535.94,464.54 axis 1,0,0
    74525 
    74526 > color cylindrical #214.1 palette
    74527 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74528 > center 536.27,535.94,464.54 axis -1,0,0
    74529 
    74530 [Repeated 1 time(s)]
    74531 
    74532 > color cylindrical #214.1 palette
    74533 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74534 > center 536.27,535.94,464.54 axis 0,0,0
    74535 
    74536 > select ~sel & ##selected
    74537 
    74538 Nothing selected 
    74539 
    74540 > color cylindrical #214.1 palette
    74541 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74542 > center 536.27,535.94,464.54 axis -1,0,0
    74543 
    74544 > color cylindrical #214.1 palette
    74545 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74546 > center 536.27,535.94,464.54 axis -2,0,0
    74547 
    74548 > color cylindrical #214.1 palette
    74549 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74550 > center 536.27,535.94,464.54 axis 2,0,0
    74551 
    74552 [Repeated 1 time(s)]
    74553 
    74554 > color cylindrical #214.1 palette
    74555 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74556 > center 536.27,535.94,464.54 axis 0,0,0
    74557 
    74558 > color cylindrical #214.1 palette
    74559 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74560 > center 536.27,535.94,464.54 axis 0,0,-2
    74561 
    74562 [Repeated 2 time(s)]
    74563 
    74564 > color cylindrical #214.1 palette
    74565 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74566 > center 536.27,535.94,464.54 axis 0,-2,-2
    74567 
    74568 > color cylindrical #214.1 palette
    74569 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74570 > center 536.27,535.94,464.54 axis 0,2,-2
    74571 
    74572 > color cylindrical #214.1 palette
    74573 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74574 > center 536.27,535.94,464.54 axis 0,0,-2
    74575 
    74576 > color cylindrical #214.1 palette
    74577 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74578 > center 536.27,535.94,464.54 axis 0,10,-2
    74579 
    74580 > color cylindrical #214.1 palette
    74581 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74582 > center 536.27,535.94,464.54 axis 0,-100,-2
    74583 
    74584 [Repeated 1 time(s)]
    74585 
    74586 > color cylindrical #214.1 palette
    74587 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74588 > center 536.27,535.94,464.54 axis 0,0,-2
    74589 
    74590 > color cylindrical #214.1 palette
    74591 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74592 > center 536.27,535.94,464.54 axis 0,-100,-2
    74593 
    74594 > color cylindrical #214.1 palette
    74595 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74596 > center 536.27,535.94,464.54 axis 0,0,-2
    74597 
    74598 > color cylindrical #214.1 palette
    74599 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74600 > center 536.27,535.94,464.54 axis 0,0,-10
    74601 
    74602 [Repeated 2 time(s)]
    74603 
    74604 > color cylindrical #214.1 palette
    74605 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74606 > center 536.27,535.94,464.54 axis 0,0,0
    74607 
    74608 [Repeated 2 time(s)]
    74609 
    74610 > color cylindrical #214.1 palette
    74611 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74612 > center 536.27,535.94,464.54 axis 0,0,100
    74613 
    74614 [Repeated 1 time(s)]
    74615 
    74616 > color cylindrical #214.1 palette
    74617 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74618 > center 536.27,535.94,464.54 axis 0,0,-10
    74619 
    74620 > color cylindrical #214.1 palette
    74621 > 213.6,#ff0000:244.6,#ff0000:275.7,#ff0000:285,#ff0000:337.9,#ff40ff:369,#ff40ff:400,#ff40ff
    74622 > center 536.27,535.94,464.54 axis 0,0,0
    74623 
    74624 [Repeated 2 time(s)]
    74625 
    74626 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:275.7,#ed00e2
    74627 > center 536.27,535.94,464.54 axis 0,0,0
    74628 
    74629 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:305.7,#ed00e2
    74630 > center 536.27,535.94,464.54 axis 0,0,0
    74631 
    74632 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:505.7,#ed00e2
    74633 > center 536.27,535.94,464.54 axis 0,0,0
    74634 
    74635 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:405.7,#ed00e2
    74636 > center 536.27,535.94,464.54 axis 0,0,0
    74637 
    74638 > color cylindrical #214.1 palette 213.6,#ff0000:244.6,#ff0000:355.7,#ed00e2
    74639 > center 536.27,535.94,464.54 axis 0,0,0
    74640 
    74641 > color cylindrical #214.1 palette #ff0000:#ff0000:#ed00e2:#ff0000 center
    74642 > 536.27,535.94,464.54 axis 0,0,0
    74643 
    74644 > color cylindrical #214.1 palette
    74645 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff0000:400,#ff40ff center
    74646 > 536.27,535.94,464.54 axis 0,0,0
    74647 
    74648 > color cylindrical #214.1 palette
    74649 > 213.6,#ff0000:275.7,#ff0000:30.9,#ff0000:400,#ff40ff center
    74650 > 536.27,535.94,464.54 axis 0,0,0
    74651 
    74652 > color cylindrical #214.1 palette
    74653 > 213.6,#ff0000:275.7,#ff0000:300.9,#ff0000:400,#ff40ff center
    74654 > 536.27,535.94,464.54 axis 0,0,0
    74655 
    74656 > color cylindrical #214.1 palette
    74657 > 213.6,#ff0000:275.7,#ff0000:280.9,#ff0000:400,#ff40ff center
    74658 > 536.27,535.94,464.54 axis 0,0,0
    74659 
    74660 > color cylindrical #214.1 palette
    74661 > 213.6,#ff0000:235.7,#ff0000:280.9,#ff0000:400,#ff40ff center
    74662 > 536.27,535.94,464.54 axis 0,0,0
    74663 
    74664 > color cylindrical #214.1 palette
    74665 > 213.6,#ff0000:235.7,#ff0000:240.9,#ff0000:400,#ff40ff center
    74666 > 536.27,535.94,464.54 axis 0,0,0
    74667 
    74668 > color cylindrical #214.1 palette
    74669 > 213.6,#ff0000:235.7,#ff0000:250.9,#ff0000:400,#ff40ff center
    74670 > 536.27,535.94,464.54 axis 0,0,0
    74671 
    74672 > color cylindrical #214.1 palette
    74673 > 213.6,#ff0000:235.7,#ff0000:260.9,#ff0000:400,#ff40ff center
    74674 > 536.27,535.94,464.54 axis 0,0,0
    74675 
    74676 [Repeated 2 time(s)]
    74677 
    74678 > color cylindrical #214.1 palette
    74679 > 213.6,#ff0000:235.7,#ff0000:270.9,#ff0000:400,#ff40ff center
    74680 > 536.27,535.94,464.54 axis 0,0,0
    74681 
    74682 [Repeated 2 time(s)]
    74683 
    74684 > color cylindrical #214.1 palette
    74685 > 213.6,#ff0000:235.7,#ff0000:280.9,#ff0000:400,#ff40ff center
    74686 > 536.27,535.94,464.54 axis 0,0,0
    74687 
    74688 [Repeated 1 time(s)]
    74689 
    74690 > color cylindrical #214.1 palette
    74691 > 213.6,#ff0000:235.7,#ff0000:280.9,#ff40ff:400,#ff40ff center
    74692 > 536.27,535.94,464.54 axis 0,0,0
    74693 
    74694 > color cylindrical #214.1 palette
    74695 > 213.6,#ff0000:235.7,#ff0000:380.9,#ff40ff:400,#ff40ff center
    74696 > 536.27,535.94,464.54 axis 0,0,0
    74697 
    74698 > color cylindrical #214.1 palette
    74699 > 213.6,#ff0000:235.7,#ff0000:480.9,#ff40ff:400,#ff40ff center
    74700 > 536.27,535.94,464.54 axis 0,0,0
    74701 
    74702 > color cylindrical #214.1 palette
    74703 > 213.6,#ff0000:235.7,#ff0000:480.9,#ff40ff:500,#ff40ff center
    74704 > 536.27,535.94,464.54 axis 0,0,0
    74705 
    74706 > color cylindrical #214.1 palette
    74707 > 213.6,#ff0000:235.7,#ff0000:450.9,#ff40ff:500,#ff40ff center
    74708 > 536.27,535.94,464.54 axis 0,0,0
    74709 
    74710 > color cylindrical #214.1 palette
    74711 > 213.6,#ff0000:235.7,#ff0000:420.9,#ff40ff:500,#ff40ff center
    74712 > 536.27,535.94,464.54 axis 0,0,0
    74713 
    74714 > color radial #214.1 palette
    74715 > 213.6,#ff0000:235.7,#ff0000:420.9,#ff40ff:500,#ff40ff center
    74716 > 536.27,535.94,464.54
    74717 
    74718 [Repeated 7 time(s)]
    74719 
    74720 > color radial #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff center
    74721 > 536.27,535.94,464.54
    74722 
    74723 [Repeated 1 time(s)]
    74724 
    74725 > color radial #214.1 palette
    74726 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    74727 > 536.27,535.94,464.54
    74728 
    74729 [Repeated 1 time(s)]
    74730 
    74731 > color radial #214.1 palette
    74732 > 213.6,#ff0000:285.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    74733 > 536.27,535.94,464.54
    74734 
    74735 > color radial #214.1 palette
    74736 > 213.6,#ff0000:285,#ff0000:337.9,#ff40ff:400,#ff40ff center
    74737 > 536.27,535.94,464.54
    74738 
    74739 > color radial #214.1 palette
    74740 > 213.6,#ff0000:285,#ff0000:347.9,#ff40ff:400,#ff40ff center
    74741 > 536.27,535.94,464.54
    74742 
    74743 > color radial #214.1 palette
    74744 > 213.6,#ff0000:285,#ff0000:335.9,#ff40ff:400,#ff40ff center
    74745 > 536.27,535.94,464.54
    74746 
    74747 > color radial #214.1 palette
    74748 > 213.6,#ff0000:285,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74749 > 536.27,535.94,464.54
    74750 
    74751 [Repeated 1 time(s)]
    74752 
    74753 > color radial #214.1 palette
    74754 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74755 > 536.27,535.94,464.54
    74756 
    74757 > color cylindrical #214.1 palette
    74758 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74759 > 536.27,535.94,464.54 axis 0,0,-1
    74760 
    74761 [Repeated 1 time(s)]
    74762 
    74763 > color cylindrical #214.1 palette
    74764 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74765 > 536.27,535.94,464.54 axis 0,0,-2
    74766 
    74767 [Repeated 1 time(s)]
    74768 
    74769 > color cylindrical #214.1 palette
    74770 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74771 > 536.27,535.94,464.54 axis 0,0,2
    74772 
    74773 [Repeated 1 time(s)]
    74774 
    74775 > color cylindrical #214.1 palette
    74776 > 213.6,#ff0000:288,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74777 > 536.27,535.94,464.54 axis 0,0,5
    74778 
    74779 [Repeated 3 time(s)]
    74780 
    74781 > color cylindrical #214.1 palette
    74782 > 213.6,#ff0000:280,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74783 > 536.27,535.94,464.54 axis 0,0,5
    74784 
    74785 [Repeated 1 time(s)]
    74786 
    74787 > color cylindrical #214.1 palette
    74788 > 213.6,#ff0000:270,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74789 > 536.27,535.94,464.54 axis 0,0,5
    74790 
    74791 > color cylindrical #214.1 palette
    74792 > 213.6,#ff0000:270,#ff0000:333.9,#ff40ff:400,#ff40ff center
    74793 > 536.27,535.94,464.54 axis 0,0,0
    74794 
    74795 [Repeated 1 time(s)]
    74796 
    74797 > color cylindrical #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff center
    74798 > 536.27,535.94,464.54 axis 0,0,0
    74799 
    74800 [Repeated 1 time(s)]
    74801 
    74802 > color cylindrical #214.1 palette
    74803 > 213.6,#ff0000:275.7,#ff0000:337.9,#ff40ff:400,#ff40ff center
    74804 > 536.27,535.94,464.54 axis 0,0,0
    74805 
    74806 [Repeated 1 time(s)]
    74807 
    74808 > color cylindrical #214.1 palette #ff0000:#ff0000:#ff40ff:#ff40ff center
    74809 > 536.27,535.94,464.54 axis 0,0,10
    74810 
    74811 > close #2
    74812 
    74813 > ui mousemode right "map eraser"
    74814 
    74815 > color cylindrical #214.1 palette
    74816 > 211.8,#ff0000:274,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74817 > 536.27,535.94,464.54 axis 0,0,0
    74818 
    74819 [Repeated 1 time(s)]
    74820 
    74821 > color cylindrical #214.1 palette
    74822 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74823 > 536.27,535.94,464.54 axis 0,0,0
    74824 
    74825 [Repeated 1 time(s)]
    74826 
    74827 > color cylindrical #215.1 palette
    74828 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74829 > 536.27,535.94,464.54 axis 0,0,0
    74830 
    74831 > show #!215 models
    74832 
    74833 > show #!216 models
    74834 
    74835 > show #!217 models
    74836 
    74837 > color radial #214.1 palette
    74838 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74839 > 536.27,535.94,464.54
    74840 
    74841 [Repeated 1 time(s)]
    74842 
    74843 > color radial #230.1 palette
    74844 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74845 > 536.27,535.94,464.54
    74846 
    74847 > color radial #231.1 palette
    74848 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74849 > 536.27,535.94,464.54
    74850 
    74851 > color radial #229.1 palette
    74852 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74853 > 536.27,535.94,464.54
    74854 
    74855 > color radial #228.1 palette
    74856 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74857 > 536.27,535.94,464.54
    74858 
    74859 > color radial #227.1 palette
    74860 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74861 > 536.27,535.94,464.54
    74862 
    74863 > color radial #226.1 palette
    74864 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74865 > 536.27,535.94,464.54
    74866 
    74867 > color radial #225.1 palette
    74868 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74869 > 536.27,535.94,464.54
    74870 
    74871 > color radial #224.1 palette
    74872 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74873 > 536.27,535.94,464.54
    74874 
    74875 > color radial #223.1 palette
    74876 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74877 > 536.27,535.94,464.54
    74878 
    74879 > color radial #222.1 palette
    74880 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74881 > 536.27,535.94,464.54
    74882 
    74883 > color radial #221.1 palette
    74884 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74885 > 536.27,535.94,464.54
    74886 
    74887 > color radial #220.1 palette
    74888 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74889 > 536.27,535.94,464.54
    74890 
    74891 > color radial #219.1 palette
    74892 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74893 > 536.27,535.94,464.54
    74894 
    74895 > color radial #218.1 palette
    74896 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74897 > 536.27,535.94,464.54
    74898 
    74899 > color radial #217.1 palette
    74900 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74901 > 536.27,535.94,464.54
    74902 
    74903 > color radial #216.1 palette
    74904 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74905 > 536.27,535.94,464.54
    74906 
    74907 > color radial #215.1 palette
    74908 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74909 > 536.27,535.94,464.54
    74910 
    74911 > color radial #214.1 palette
    74912 > 211.8,#ff0000:278,#ff0000:336.1,#ff40ff:398.2,#ff40ff center
    74913 > 536.27,535.94,464.54
    74914 
    74915 > show #!231 models
    74916 
    74917 > color #231 #dbb3e2ff models
    74918 
    74919 > color #231 #ff0002ff models
    74920 
    74921 > hide #!231 models
    74922 
    74923 > show #!231 models
    74924 
    74925 > color radial #231.1 palette
    74926 > 211.8,#dbb3e2:278,#dbb3e2:336.1,#ff0002:398.2,#ff0002 center
    74927 > 534.95,535.83,501.33
    74928 
    74929 > color radial #231.1 palette #dbb3e2:#dbb3e2:#ff0002:#ff0002 center
    74930 > 534.95,535.83,501.33
    74931 
    74932 > color radial #231.1 palette
    74933 > 69.6,#dbb3e2:126.8,#dbb3e2:184,#ff0002:241.3,#ff0002 center
    74934 > 534.95,535.83,501.33
    74935 
    74936 > color radial #231.1 palette
    74937 > 69.6,#f6d9ff:126.8,#f6d9ff:184,#ff0002:241.3,#ff0002 center
    74938 > 534.95,535.83,501.33
    74939 
    74940 [Repeated 1 time(s)]
    74941 
    74942 > color #231 orchid models
    74943 
    74944 > color radial #231.1 palette
    74945 > 69.6,#f6d9ff:126.8,#fbbdff:184,#ff0002:241.3,#ff0002 center
    74946 > 534.95,535.83,501.33
    74947 
    74948 > color radial #231.1 palette
    74949 > 69.6,#fdd5f8:126.8,#fbbdff:184,#ff0002:241.3,#ff0002 center
    74950 > 534.95,535.83,501.33
    74951 
    74952 [Repeated 2 time(s)]
    74953 
    74954 > color radial #231.1 palette
    74955 > 69.6,#fdd5f8:126.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    74956 > 534.95,535.83,501.33
    74957 
    74958 > color radial #231.1 palette
    74959 > 69.6,#fdd5f8:136.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    74960 > 534.95,535.83,501.33
    74961 
    74962 [Repeated 1 time(s)]
    74963 
    74964 > color radial #231.1 palette
    74965 > 69.6,#fdd5f8:140.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    74966 > 534.95,535.83,501.33
    74967 
    74968 [Repeated 1 time(s)]
    74969 
    74970 > color radial #231.1 palette
    74971 > 69.6,#fdd5f8:145.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    74972 > 534.95,535.83,501.33
    74973 
    74974 > color radial #231.1 palette
    74975 > 69.6,#fdd5f8:155.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    74976 > 534.95,535.83,501.33
    74977 
    74978 > color radial #231.1 palette
    74979 > 69.6,#fdd5f8:160.8,#fdd5f8:184,#ff0002:241.3,#ff0002 center
    74980 > 534.95,535.83,501.33
    74981 
    74982 > color radial #231.1 palette
    74983 > 69.6,#fdd5f8:160.8,#fdd5f8:184,#ed92a9:241.3,#ff0002 center
    74984 > 534.95,535.83,501.33
    74985 
    74986 > color radial #231.1 palette
    74987 > 69.6,#fdd5f8:155.8,#fdd5f8:184,#ed92a9:241.3,#ff0002 center
    74988 > 534.95,535.83,501.33
    74989 
    74990 [Repeated 2 time(s)]
    74991 
    74992 > color radial #231.1 palette
    74993 > 69.6,#fdd5f8:155.8,#fdd5f8:180,#ed92a9:241.3,#ff0002 center
    74994 > 534.95,535.83,501.33
    74995 
    74996 > color radial #231.1 palette
    74997 > 69.6,#fdd5f8:155.8,#fdd5f8:170,#ed92a9:241.3,#ff0002 center
    74998 > 534.95,535.83,501.33
    74999 
    75000 > show #!209 models
    75001 
    75002 > show #!208 models
    75003 
    75004 > show #!207 models
    75005 
    75006 > show #!206 models
    75007 
    75008 > show #!107-205 models
    75009 
    75010 > show #!89 models
    75011 
    75012 > show #!88 models
    75013 
    75014 > show #!4 models
    75015 
    75016 > save /Users/shoichi/Desktop/For_Composition-
    75017 > maps/Cleanup2_Building_Composition.cxs includeMaps true
    75018 
    75019 > view orient
    75020 
    75021 > turn x 90
    75022 
    75023 [Repeated 2 time(s)]
    75024 
    75025 > save /Users/shoichi/Desktop/Composition1.png supersample 2
    75026 > transparentBackground true
    75027 
    75028 > turn x 20
    75029 
    75030 > turn x -20
    75031 
    75032 > turn x 10
    75033 
    75034 > hide #!3 models
    75035 
    75036 > show #!3 models
    75037 
    75038 > hide #!88 models
    75039 
    75040 > show #!82 models
    75041 
    75042 > hide #!82 models
    75043 
    75044 > show #!88 models
    75045 
    75046 > view orient
    75047 
    75048 > turn x 90
    75049 
    75050 [Repeated 2 time(s)]
    75051 
    75052 > turn x 10
    75053 
    75054 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    75055 > transparentBackground true
    75056 
    75057 > turn x -10
    75058 
    75059 > turn y 90
    75060 
    75061 [Repeated 3 time(s)]
    75062 
    75063 > turn y 10
    75064 
    75065 [Repeated 8 time(s)]
    75066 
    75067 > turn x 10
    75068 
    75069 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    75070 > transparentBackground true
    75071 
    75072 > hide #!4 models
    75073 
    75074 > hide #!88 models
    75075 
    75076 > hide #!89 models
    75077 
    75078 > hide #!107-140 models
    75079 
    75080 > hide #!209 models
    75081 
    75082 > turn x 10
    75083 
    75084 > show #!88-140 models
    75085 
    75086 > show #!83 models
    75087 
    75088 > turn x -10
    75089 
    75090 [Repeated 1 time(s)]
    75091 
    75092 > turn x 15
    75093 
    75094 > view name P1
    75095 
    75096 > show #!209 models
    75097 
    75098 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    75099 > transparentBackground true
    75100 
    75101 > hide #!209 models
    75102 
    75103 > hide #!83 models
    75104 
    75105 > hide #!88 models
    75106 
    75107 > hide #!107-140 models
    75108 
    75109 > hide #!175-232 models
    75110 
    75111 > show #!107 models
    75112 
    75113 > show #!108 models
    75114 
    75115 > show #!109 models
    75116 
    75117 > show #!110 models
    75118 
    75119 > show #!111 models
    75120 
    75121 > show #!112 models
    75122 
    75123 > show #!113 models
    75124 
    75125 > show #!114 models
    75126 
    75127 > show #!115 models
    75128 
    75129 > show #!116 models
    75130 
    75131 > show #!117 models
    75132 
    75133 > show #!118 models
    75134 
    75135 > show #!119 models
    75136 
    75137 > show #!120 models
    75138 
    75139 > show #!121 models
    75140 
    75141 > show #!122 models
    75142 
    75143 > hide #!122 models
    75144 
    75145 > show #!122 models
    75146 
    75147 > show #!214 models
    75148 
    75149 > show #!215 models
    75150 
    75151 > show #!216 models
    75152 
    75153 > show #!217 models
    75154 
    75155 > show #!218 models
    75156 
    75157 > show #!219 models
    75158 
    75159 > show #!220 models
    75160 
    75161 > show #!221 models
    75162 
    75163 > show #!222 models
    75164 
    75165 > show #!223 models
    75166 
    75167 > show #!224 models
    75168 
    75169 > show #!225 models
    75170 
    75171 > show #!226 models
    75172 
    75173 > show #!227 models
    75174 
    75175 > show #!228 models
    75176 
    75177 > show #!229 models
    75178 
    75179 > hide #!141-174 models
    75180 
    75181 > show #!230 models
    75182 
    75183 > show #!231 models
    75184 
    75185 > turn x -15
    75186 
    75187 > turn x 20
    75188 
    75189 > turn x 5
    75190 
    75191 > show #!123 models
    75192 
    75193 > view name P2
    75194 
    75195 > show #!175-232 models
    75196 
    75197 > show #!124-174 models
    75198 
    75199 > show #!88 models
    75200 
    75201 > turn x -5
    75202 
    75203 > show #!4 models
    75204 
    75205 > save /Users/shoichi/Desktop/Composition2.png supersample 2
    75206 > transparentBackground true
    75207 
    75208 > hide #!88 models
    75209 
    75210 > hide #!89 models
    75211 
    75212 > hide #!4 models
    75213 
    75214 > hide #!3 models
    75215 
    75216 > hide #!209 models
    75217 
    75218 > hide #!175-232 models
    75219 
    75220 > hide #!107-123 models
    75221 
    75222 > hide #!107-140 models
    75223 
    75224 > save /Users/shoichi/Desktop/Composition_medial.png supersample 2
    75225 > transparentBackground true
    75226 
    75227 > hide #!141-174 models
    75228 
    75229 > show #!107-140 models
    75230 
    75231 > show #!175-191 models
    75232 
    75233 > show #!214-232 models
    75234 
    75235 > select ~sel & ##selected
    75236 
    75237 Nothing selected 
    75238 
    75239 > select ~sel & ##selected
    75240 
    75241 Nothing selected 
    75242 
    75243 > select ~sel & ##selected
    75244 
    75245 Nothing selected 
    75246 
    75247 > select ~sel & ##selected
    75248 
    75249 Nothing selected 
    75250 
    75251 > select ~sel & ##selected
    75252 
    75253 Nothing selected 
    75254 
    75255 > view P2
    75256 
    75257 > turn x 205
    75258 
    75259 > turn x -205
    75260 
    75261 > turn x -20
    75262 
    75263 > view p2
    75264 
    75265 Expected an objects specifier or a view name or a keyword 
    75266 
    75267 > view P2
    75268 
    75269 > view -25
    75270 
    75271 Expected an objects specifier or a view name or a keyword 
    75272 
    75273 > turn x 25
    75274 
    75275 > turn x -25
    75276 
    75277 [Repeated 1 time(s)]
    75278 
    75279 > select add #107
    75280 
    75281 2 models selected 
    75282 
    75283 > select add #108
    75284 
    75285 4 models selected 
    75286 
    75287 > select add #109
    75288 
    75289 6 models selected 
    75290 
    75291 > select add #110
    75292 
    75293 8 models selected 
    75294 
    75295 > select add #111
    75296 
    75297 10 models selected 
    75298 
    75299 > select add #112
    75300 
    75301 12 models selected 
    75302 
    75303 > select add #113
    75304 
    75305 14 models selected 
    75306 
    75307 > select add #115
    75308 
    75309 16 models selected 
    75310 
    75311 > select add #114
    75312 
    75313 18 models selected 
    75314 
    75315 > select add #116
    75316 
    75317 20 models selected 
    75318 
    75319 > select add #117
    75320 
    75321 22 models selected 
    75322 
    75323 > select add #118
    75324 
    75325 24 models selected 
    75326 
    75327 > select add #119
    75328 
    75329 26 models selected 
    75330 
    75331 > select add #120
    75332 
    75333 28 models selected 
    75334 
    75335 > select add #121
    75336 
    75337 30 models selected 
    75338 
    75339 > select add #122
    75340 
    75341 32 models selected 
    75342 
    75343 > ui mousemode right "crop volume"
    75344 
    75345 > volume #232 region 0,0,26,255,255,255
    75346 
    75347 > volume #231 region 3,0,0,255,255,255
    75348 
    75349 > volume #231 region 0,0,0,255,255,255
    75350 
    75351 > select add #123
    75352 
    75353 34 models selected 
    75354 
    75355 > hide #!124-232 models
    75356 
    75357 > volume sel showOutlineBox true
    75358 
    75359 > volume #116 region 0,0,0,199,199,199
    75360 
    75361 > volume #115 region 0,0,0,192,199,199
    75362 
    75363 > volume #116 region 0,0,0,199,199,199
    75364 
    75365 [Repeated 1 time(s)]
    75366 
    75367 > view orient
    75368 
    75369 > turn x 90
    75370 
    75371 [Repeated 2 time(s)]
    75372 
    75373 > volume #120 region 0,0,2,199,199,199
    75374 
    75375 > select clear
    75376 
    75377 > volume #120 region 0,0,61,199,199,199
    75378 
    75379 > volume #121 region 0,0,62,199,199,199
    75380 
    75381 > volume #122 region 0,0,0,199,199,199
    75382 
    75383 [Repeated 1 time(s)]
    75384 
    75385 > volume #119 region 0,0,0,199,199,199
    75386 
    75387 > select clear
    75388 
    75389 > hide #!107 models
    75390 
    75391 > show #!107 models
    75392 
    75393 > hide #!107 models
    75394 
    75395 > hide #!108 models
    75396 
    75397 > hide #!109 models
    75398 
    75399 > hide #!110 models
    75400 
    75401 > hide #!111 models
    75402 
    75403 > hide #!112 models
    75404 
    75405 > hide #!113 models
    75406 
    75407 > hide #!114 models
    75408 
    75409 > hide #!115 models
    75410 
    75411 > hide #!116 models
    75412 
    75413 > hide #!117 models
    75414 
    75415 > hide #!118 models
    75416 
    75417 > hide #!122 models
    75418 
    75419 > show #!122 models
    75420 
    75421 > hide #!123 models
    75422 
    75423 > hide #!122 models
    75424 
    75425 > hide #!119 models
    75426 
    75427 > volume #121 region 0,0,62,199,199,199
    75428 
    75429 > volume #121 region 0,0,62,190,199,199
    75430 
    75431 > volume #121 region 0,0,0,190,199,199
    75432 
    75433 > hide #!120 models
    75434 
    75435 > show #!120 models
    75436 
    75437 > hide #!121 models
    75438 
    75439 > volume #120 region 0,0,0,199,199,199
    75440 
    75441 > show #!121 models
    75442 
    75443 > show #!122 models
    75444 
    75445 > volume #!120-122 showOutlineBox false
    75446 
    75447 > show #!107 models
    75448 
    75449 > show #!108 models
    75450 
    75451 > show #!109 models
    75452 
    75453 > show #!110 models
    75454 
    75455 > show #!111 models
    75456 
    75457 > show #!112 models
    75458 
    75459 > show #!113 models
    75460 
    75461 > show #!114 models
    75462 
    75463 > show #!115 models
    75464 
    75465 > show #!116 models
    75466 
    75467 > show #!118 models
    75468 
    75469 > show #!117 models
    75470 
    75471 > show #!119 models
    75472 
    75473 > show #!123 models
    75474 
    75475 > view P2
    75476 
    75477 > volume #!107-123 showOutlineBox false
    75478 
    75479 > select ~sel & ##selected
    75480 
    75481 Nothing selected 
    75482 
    75483 > view P1
    75484 
    75485 > view P2
    75486 
    75487 > show #!89 models
    75488 
    75489 > hide #!89 models
    75490 
    75491 > hide #!108 models
    75492 
    75493 > hide #!109 models
    75494 
    75495 > hide #!110 models
    75496 
    75497 > hide #!111 models
    75498 
    75499 > hide #!112 models
    75500 
    75501 > hide #!107 models
    75502 
    75503 > hide #!113 models
    75504 
    75505 > hide #!114 models
    75506 
    75507 > hide #!115 models
    75508 
    75509 > hide #!123 models
    75510 
    75511 > hide #!122 models
    75512 
    75513 > hide #!121 models
    75514 
    75515 > hide #!120 models
    75516 
    75517 > hide #!119 models
    75518 
    75519 > hide #!118 models
    75520 
    75521 > hide #!117 models
    75522 
    75523 > volume #116 region 0,0,0,199,199,199
    75524 
    75525 > volume #!116 showOutlineBox true
    75526 
    75527 > volume #116 region 0,0,61,199,199,199
    75528 
    75529 > volume #!116 showOutlineBox false
    75530 
    75531 > show #!107 models
    75532 
    75533 > show #!108 models
    75534 
    75535 > show #!109 models
    75536 
    75537 > show #!110 models
    75538 
    75539 > show #!111 models
    75540 
    75541 > show #!112 models
    75542 
    75543 > show #!113 models
    75544 
    75545 > show #!115 models
    75546 
    75547 > show #!114 models
    75548 
    75549 > show #!117 models
    75550 
    75551 > show #!118 models
    75552 
    75553 > show #!119 models
    75554 
    75555 > show #!120 models
    75556 
    75557 > show #!121 models
    75558 
    75559 > show #!122 models
    75560 
    75561 > show #!123 models
    75562 
    75563 > volume #107-123 region 0,0,61,199,199,199
    75564 
    75565 > view P2
    75566 
    75567 > show #!124 models
    75568 
    75569 > show #!125 models
    75570 
    75571 > show #!126 models
    75572 
    75573 > show #!127 models
    75574 
    75575 > show #!128 models
    75576 
    75577 > show #!129 models
    75578 
    75579 > show #!130 models
    75580 
    75581 > show #!131 models
    75582 
    75583 > show #!132 models
    75584 
    75585 > show #!133 models
    75586 
    75587 > show #!134 models
    75588 
    75589 > show #!135 models
    75590 
    75591 > show #!136 models
    75592 
    75593 > show #!137 models
    75594 
    75595 > show #!138 models
    75596 
    75597 > show #!139 models
    75598 
    75599 > show #!140 models
    75600 
    75601 > show #!175-191 models
    75602 
    75603 > show #!214-232 models
    75604 
    75605 > save /Users/shoichi/Desktop/Composition3_medial.png supersample 2
    75606 > transparentBackground true
    75607 
    75608 > hide #!214-232 models
    75609 
    75610 > hide #!175-191 models
    75611 
    75612 > hide #!107-140 models
    75613 
    75614 > show #!192-208 models
    75615 
    75616 > show #!4 models
    75617 
    75618 > hide #!4 models
    75619 
    75620 > hide #!192 models
    75621 
    75622 > hide #!193 models
    75623 
    75624 > hide #!194 models
    75625 
    75626 > hide #!195 models
    75627 
    75628 > hide #!196 models
    75629 
    75630 > hide #!197 models
    75631 
    75632 > hide #!198 models
    75633 
    75634 > hide #!199 models
    75635 
    75636 > hide #!200 models
    75637 
    75638 > hide #!201 models
    75639 
    75640 > hide #!202 models
    75641 
    75642 > hide #!203 models
    75643 
    75644 > hide #!204 models
    75645 
    75646 > hide #!205 models
    75647 
    75648 > hide #!206 models
    75649 
    75650 > hide #!207 models
    75651 
    75652 > hide #!208 models
    75653 
    75654 > show #!107 models
    75655 
    75656 > hide #!107 models
    75657 
    75658 > show #!118 models
    75659 
    75660 > hide #!118 models
    75661 
    75662 > show #!115 models
    75663 
    75664 > volume #!115 showOutlineBox true
    75665 
    75666 > volume #115 region 0,0,61,190,199,199
    75667 
    75668 > volume #115 region 0,0,0,190,199,199
    75669 
    75670 > volume #115 region 0,0,0,199,199,199
    75671 
    75672 > volume #115 region 0,0,0,199,199,71
    75673 
    75674 > volume #!115 showOutlineBox false
    75675 
    75676 > view P2
    75677 
    75678 > volume #107-123 region 0,0,0,199,199,71
    75679 
    75680 > show #!107 models
    75681 
    75682 > show #!108 models
    75683 
    75684 > show #!109 models
    75685 
    75686 > show #!110 models
    75687 
    75688 > show #!111 models
    75689 
    75690 > show #!112 models
    75691 
    75692 > show #!113 models
    75693 
    75694 > show #!114 models
    75695 
    75696 > show #!116 models
    75697 
    75698 > show #!117 models
    75699 
    75700 > show #!118 models
    75701 
    75702 > show #!119 models
    75703 
    75704 > show #!120 models
    75705 
    75706 > show #!121 models
    75707 
    75708 > show #!122 models
    75709 
    75710 > show #!123 models
    75711 
    75712 > show #!192-208 models
    75713 
    75714 > show #!4 models
    75715 
    75716 > save /Users/shoichi/Desktop/Composition4_medial.png supersample 2
    75717 > transparentBackground true
    75718 
    75719 > save /Users/shoichi/Desktop/For_Composition-
    75720 > maps/Cleanup3_Building_Composition.cxs includeMaps true
    75721 
    75722 ——— End of log from Tue Sep 9 15:35:44 2025 ———
    75723 
    75724 opened ChimeraX session 
    75725 
    75726 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75727 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75728 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    75729 > MOdels/1xPflCD_Cage.pdb"
    75730 
    75731 Chain information for 1xPflCD_Cage.pdb #2 
    75732 --- 
    75733 Chain | Description 
    75734 A D | No description available 
    75735 B E | No description available 
    75736 C F | No description available 
    75737 L X | No description available 
    75738 c | No description available 
    75739  
    75740 
    75741 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    75742 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    75743 > review/Updated_Figures/09092025/For_Composition-maps/Segmented for
    75744 > Compositions/Resegment-PflABCD/1unit_PflABCD.mrc"
    75745 
    75746 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    75747 level 0.0254, step 1, values float32 
    75748 
    75749 > show #!167 models
    75750 
    75751 > select add #5
    75752 
    75753 2 models selected 
    75754 
    75755 > ui mousemode right "translate selected models"
    75756 
    75757 > view matrix models #5,1,0,0,80.692,0,1,0,230.3,0,0,1,221.48
    75758 
    75759 > volume #5 level 0.008421
    75760 
    75761 > ui mousemode right "rotate selected models"
    75762 
    75763 > view matrix models
    75764 > #5,-0.6421,0.50185,-0.57953,470.1,-0.70423,-0.68485,0.1872,606.29,-0.30294,0.52833,0.79316,245.39
    75765 
    75766 > ui mousemode right "translate selected models"
    75767 
    75768 > view matrix models
    75769 > #5,-0.6421,0.50185,-0.57953,483.03,-0.70423,-0.68485,0.1872,692.04,-0.30294,0.52833,0.79316,292.23
    75770 
    75771 > ui mousemode right "rotate selected models"
    75772 
    75773 > view matrix models
    75774 > #5,-0.61177,0.59906,-0.51658,446.98,-0.77868,-0.57101,0.26,672.85,-0.13922,0.56132,0.81581,247.87
    75775 
    75776 > ui mousemode right "translate selected models"
    75777 
    75778 > view matrix models
    75779 > #5,-0.61177,0.59906,-0.51658,427.64,-0.77868,-0.57101,0.26,661.19,-0.13922,0.56132,0.81581,225.95
    75780 
    75781 > ui mousemode right "rotate selected models"
    75782 
    75783 > view matrix models
    75784 > #5,-0.95336,0.20464,-0.22189,496.22,-0.26238,-0.92522,0.27407,608.04,-0.14921,0.31951,0.93576,240.2
    75785 
    75786 > ui mousemode right "translate selected models"
    75787 
    75788 > view matrix models
    75789 > #5,-0.95336,0.20464,-0.22189,525,-0.26238,-0.92522,0.27407,604.74,-0.14921,0.31951,0.93576,250.78
    75790 
    75791 > view matrix models
    75792 > #5,-0.95336,0.20464,-0.22189,510.51,-0.26238,-0.92522,0.27407,600.04,-0.14921,0.31951,0.93576,217.04
    75793 
    75794 > volume #5 level 0.004039
    75795 
    75796 > ui tool show "Fit in Map"
    75797 
    75798 > fitmap #2 inMap #167
    75799 
    75800 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1xPflC.mrc gaussian copy (#167)
    75801 using 16838 atoms 
    75802 average map value = 0, steps = 24 
    75803 shifted from previous position = 0 
    75804 rotated from previous position = 0 degrees 
    75805 atoms outside contour = 16838, contour level = 0.0010738 
    75806  
    75807 Position of 1xPflCD_Cage.pdb (#2) relative to 1xPflC.mrc gaussian copy (#167)
    75808 coordinates: 
    75809 Matrix rotation and translation 
    75810 -0.93089425 -0.36503026 -0.01374048 661.01120682 
    75811 0.36496286 -0.93099409 0.00721828 514.09260469 
    75812 -0.01542720 0.00170469 0.99987954 -232.71151912 
    75813 Axis -0.00755270 0.00231052 0.99996881 
    75814 Axis point 280.98545554 319.62206504 0.00000000 
    75815 Rotation angle (degrees) 158.59192822 
    75816 Shift along axis -236.50885839 
    75817  
    75818 
    75819 > fitmap #2 inMap #167
    75820 
    75821 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1xPflC.mrc gaussian copy (#167)
    75822 using 16838 atoms 
    75823 average map value = 0, steps = 24 
    75824 shifted from previous position = 0 
    75825 rotated from previous position = 0 degrees 
    75826 atoms outside contour = 16838, contour level = 0.0010738 
    75827  
    75828 Position of 1xPflCD_Cage.pdb (#2) relative to 1xPflC.mrc gaussian copy (#167)
    75829 coordinates: 
    75830 Matrix rotation and translation 
    75831 -0.93089425 -0.36503026 -0.01374048 661.01120682 
    75832 0.36496286 -0.93099409 0.00721828 514.09260469 
    75833 -0.01542720 0.00170469 0.99987954 -232.71151912 
    75834 Axis -0.00755270 0.00231052 0.99996881 
    75835 Axis point 280.98545554 319.62206504 0.00000000 
    75836 Rotation angle (degrees) 158.59192822 
    75837 Shift along axis -236.50885839 
    75838  
    75839 
    75840 > fitmap #2 inMap #167
    75841 
    75842 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1xPflC.mrc gaussian copy (#167)
    75843 using 16838 atoms 
    75844 average map value = 0, steps = 24 
    75845 shifted from previous position = 0 
    75846 rotated from previous position = 0 degrees 
    75847 atoms outside contour = 16838, contour level = 0.0010738 
    75848  
    75849 Position of 1xPflCD_Cage.pdb (#2) relative to 1xPflC.mrc gaussian copy (#167)
    75850 coordinates: 
    75851 Matrix rotation and translation 
    75852 -0.93089425 -0.36503026 -0.01374048 661.01120682 
    75853 0.36496286 -0.93099409 0.00721828 514.09260469 
    75854 -0.01542720 0.00170469 0.99987954 -232.71151912 
    75855 Axis -0.00755270 0.00231052 0.99996881 
    75856 Axis point 280.98545554 319.62206504 0.00000000 
    75857 Rotation angle (degrees) 158.59192822 
    75858 Shift along axis -236.50885839 
    75859  
    75860 
    75861 > view matrix models
    75862 > #5,-0.95336,0.20464,-0.22189,513.13,-0.26238,-0.92522,0.27407,604.03,-0.14921,0.31951,0.93576,224.15
    75863 
    75864 > hide #2 models
    75865 
    75866 > show #2 models
    75867 
    75868 > fitmap #5 inMap #167
    75869 
    75870 Fit map 1unit_PflABCD.mrc in map 1xPflC.mrc gaussian copy using 190573 points 
    75871 correlation = 0.5216, correlation about mean = 0.3123, overlap = 47.08 
    75872 steps = 344, shift = 27.3, angle = 21 degrees 
    75873  
    75874 Position of 1unit_PflABCD.mrc (#5) relative to 1xPflC.mrc gaussian copy (#167)
    75875 coordinates: 
    75876 Matrix rotation and translation 
    75877 0.99999427 -0.00337820 -0.00022407 0.72474418 
    75878 0.00337640 0.99996544 -0.00759714 1.76410533 
    75879 0.00024973 0.00759634 0.99997112 -1.22720418 
    75880 Axis 0.91339733 -0.02848334 0.40607144 
    75881 Axis point 0.00000000 168.49545384 231.86504758 
    75882 Rotation angle (degrees) 0.47653568 
    75883 Shift along axis 0.11339922 
    75884  
    75885 
    75886 > fitmap #5 inMap #167
    75887 
    75888 Fit map 1unit_PflABCD.mrc in map 1xPflC.mrc gaussian copy using 190573 points 
    75889 correlation = 0.5216, correlation about mean = 0.3123, overlap = 47.08 
    75890 steps = 348, shift = 0.0392, angle = 0.0232 degrees 
    75891  
    75892 Position of 1unit_PflABCD.mrc (#5) relative to 1xPflC.mrc gaussian copy (#167)
    75893 coordinates: 
    75894 Matrix rotation and translation 
    75895 0.99999449 -0.00329623 -0.00039375 0.75967208 
    75896 0.00329329 0.99996837 -0.00723968 1.66087378 
    75897 0.00041760 0.00723834 0.99997372 -1.20368478 
    75898 Axis 0.90898107 -0.05093893 0.41371324 
    75899 Axis point 0.00000000 173.29551538 229.41493132 
    75900 Rotation angle (degrees) 0.45630135 
    75901 Shift along axis 0.10794406 
    75902  
    75903 
    75904 > hide #!167 models
    75905 
    75906 > show #!167 models
    75907 
    75908 > hide #!167 models
    75909 
    75910 > show #!167 models
    75911 
    75912 > hide #!167 models
    75913 
    75914 > hide #!116 models
    75915 
    75916 > show #!116 models
    75917 
    75918 > hide #!5 models
    75919 
    75920 > show #!5 models
    75921 
    75922 > hide #!107-208 models
    75923 
    75924 > hide #!4 models
    75925 
    75926 > select subtract #5
    75927 
    75928 Nothing selected 
    75929 
    75930 > hide #2 models
    75931 
    75932 > show #!116 models
    75933 
    75934 > hide #!5 models
    75935 
    75936 > ui mousemode right "crop volume"
    75937 
    75938 > volume #!116 showOutlineBox true
    75939 
    75940 > volume #116 region 0,0,0,199,199,199
    75941 
    75942 > volume #!116 showOutlineBox false
    75943 
    75944 > show #!5 models
    75945 
    75946 > fitmap #5 inMap #116
    75947 
    75948 Fit map 1unit_PflABCD.mrc in map Single_Cage_unit.mrc gaussian copy using
    75949 190573 points 
    75950 correlation = 0.3822, correlation about mean = 0.2659, overlap = 25.07 
    75951 steps = 152, shift = 5.38, angle = 3.77 degrees 
    75952  
    75953 Position of 1unit_PflABCD.mrc (#5) relative to Single_Cage_unit.mrc gaussian
    75954 copy (#116) coordinates: 
    75955 Matrix rotation and translation 
    75956 0.99999606 0.00065533 0.00272954 -0.53391967 
    75957 -0.00065318 0.99999948 -0.00078927 0.34391796 
    75958 -0.00273006 0.00078748 0.99999597 1.00968152 
    75959 Axis 0.27038883 0.93623691 -0.22438877 
    75960 Axis point 365.53335285 0.00000000 191.28738668 
    75961 Rotation angle (degrees) 0.16705855 
    75962 Shift along axis -0.04893842 
    75963  
    75964 
    75965 > fitmap #5 inMap #116
    75966 
    75967 Fit map 1unit_PflABCD.mrc in map Single_Cage_unit.mrc gaussian copy using
    75968 190573 points 
    75969 correlation = 0.3822, correlation about mean = 0.2659, overlap = 25.07 
    75970 steps = 88, shift = 0.0155, angle = 0.00166 degrees 
    75971  
    75972 Position of 1unit_PflABCD.mrc (#5) relative to Single_Cage_unit.mrc gaussian
    75973 copy (#116) coordinates: 
    75974 Matrix rotation and translation 
    75975 0.99999613 0.00063824 0.00270904 -0.52681767 
    75976 -0.00063614 0.99999950 -0.00077787 0.32314980 
    75977 -0.00270953 0.00077615 0.99999603 1.01356127 
    75978 Axis 0.26889614 0.93758759 -0.22050937 
    75979 Axis point 368.73544003 0.00000000 188.82225704 
    75980 Rotation angle (degrees) 0.16556403 
    75981 Shift along axis -0.06217775 
    75982  
    75983 
    75984 > show #!169 models
    75985 
    75986 > hide #!169 models
    75987 
    75988 > show #!170 models
    75989 
    75990 > hide #!170 models
    75991 
    75992 > show #!168 models
    75993 
    75994 > hide #!168 models
    75995 
    75996 > show #!167 models
    75997 
    75998 > hide #!167 models
    75999 
    76000 > hide #!5 models
    76001 
    76002 > show #!5 models
    76003 
    76004 > hide #!5 models
    76005 
    76006 > show #!5 models
    76007 
    76008 > show #2 models
    76009 
    76010 > hide #!116 models
    76011 
    76012 > select add #2
    76013 
    76014 16838 atoms, 17164 bonds, 2046 residues, 1 model selected 
    76015 
    76016 > hide sel atoms
    76017 
    76018 > show sel cartoons
    76019 
    76020 > ui mousemode right "translate selected models"
    76021 
    76022 > view matrix models #2,1,0,0,-60.581,0,1,0,237.84,0,0,1,277.4
    76023 
    76024 > ui mousemode right "rotate selected models"
    76025 
    76026 > view matrix models
    76027 > #2,-0.96014,-0.24492,-0.13469,614.58,0.2033,-0.94262,0.26485,691.24,-0.19182,0.22691,0.95484,276.75
    76028 
    76029 > ui mousemode right "translate selected models"
    76030 
    76031 > view matrix models
    76032 > #2,-0.96014,-0.24492,-0.13469,589.79,0.2033,-0.94262,0.26485,626.99,-0.19182,0.22691,0.95484,242.85
    76033 
    76034 > color #5 #b2b2b284 models
    76035 
    76036 > color #5 #424242ff models
    76037 
    76038 > color #5 #42424259 models
    76039 
    76040 > color #5 #011993ff models
    76041 
    76042 > color #5 #0119937e models
    76043 
    76044 > color #5 #919191ff models
    76045 
    76046 > color #5 #919191a6 models
    76047 
    76048 > view matrix models
    76049 > #2,-0.96014,-0.24492,-0.13469,585.55,0.2033,-0.94262,0.26485,622.04,-0.19182,0.22691,0.95484,245.15
    76050 
    76051 > view matrix models
    76052 > #2,-0.96014,-0.24492,-0.13469,585.03,0.2033,-0.94262,0.26485,611.84,-0.19182,0.22691,0.95484,242.16
    76053 
    76054 > ui mousemode right "rotate selected models"
    76055 
    76056 > view matrix models
    76057 > #2,-0.95226,-0.27654,-0.12934,590.84,0.26842,-0.96023,0.076866,639.34,-0.14545,0.03848,0.98862,276.56
    76058 
    76059 > ui mousemode right "translate selected models"
    76060 
    76061 > view matrix models
    76062 > #2,-0.95226,-0.27654,-0.12934,585.15,0.26842,-0.96023,0.076866,637.34,-0.14545,0.03848,0.98862,271.71
    76063 
    76064 > ui mousemode right "rotate selected models"
    76065 
    76066 > view matrix models
    76067 > #2,-0.95679,-0.2842,0.061569,546.71,0.29013,-0.94724,0.13623,614.1,0.019605,0.1482,0.98876,191.12
    76068 
    76069 > fitmap #2 inMap #5
    76070 
    76071 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    76072 atoms 
    76073 average map value = 0.01933, steps = 168 
    76074 shifted from previous position = 7.72 
    76075 rotated from previous position = 18.1 degrees 
    76076 atoms outside contour = 5997, contour level = 0.0040392 
    76077  
    76078 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    76079 coordinates: 
    76080 Matrix rotation and translation 
    76081 0.93390400 0.35699461 0.01944616 -83.87195291 
    76082 -0.35735917 0.93374270 0.02046929 -6.42039720 
    76083 -0.01085029 -0.02606561 0.99960134 13.41569388 
    76084 Axis -0.06494673 0.04228343 -0.99699249 
    76085 Axis point -58.81330121 225.54168847 0.00000000 
    76086 Rotation angle (degrees) 20.99302791 
    76087 Shift along axis -8.19961325 
    76088  
    76089 
    76090 > fitmap #2 inMap #5
    76091 
    76092 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    76093 atoms 
    76094 average map value = 0.01933, steps = 76 
    76095 shifted from previous position = 0.0902 
    76096 rotated from previous position = 0.154 degrees 
    76097 atoms outside contour = 6009, contour level = 0.0040392 
    76098  
    76099 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    76100 coordinates: 
    76101 Matrix rotation and translation 
    76102 0.93466237 0.35494294 0.02053659 -83.73886216 
    76103 -0.35535012 0.93448287 0.02163452 -7.57451421 
    76104 -0.01151208 -0.02751865 0.99955499 14.08003530 
    76105 Axis -0.06896631 0.04496716 -0.99660504 
    76106 Axis point -61.93151124 226.19228646 0.00000000 
    76107 Rotation angle (degrees) 20.87659476 
    76108 Shift along axis -8.59767797 
    76109  
    76110 
    76111 > fitmap #2 inMap #5
    76112 
    76113 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    76114 atoms 
    76115 average map value = 0.01933, steps = 48 
    76116 shifted from previous position = 0.0214 
    76117 rotated from previous position = 0.0103 degrees 
    76118 atoms outside contour = 6008, contour level = 0.0040392 
    76119  
    76120 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    76121 coordinates: 
    76122 Matrix rotation and translation 
    76123 0.93469030 0.35486797 0.02056115 -83.72895675 
    76124 -0.35527402 0.93451546 0.02147615 -7.55397195 
    76125 -0.01159352 -0.02737840 0.99955790 14.06270804 
    76126 Axis -0.06856333 0.04512642 -0.99662564 
    76127 Axis point -61.86572666 226.22279870 0.00000000 
    76128 Rotation angle (degrees) 20.87149527 
    76129 Shift along axis -8.61540333 
    76130  
    76131 
    76132 > fitmap #2 inMap #5
    76133 
    76134 Fit molecule 1xPflCD_Cage.pdb (#2) to map 1unit_PflABCD.mrc (#5) using 16838
    76135 atoms 
    76136 average map value = 0.01933, steps = 56 
    76137 shifted from previous position = 0.0107 
    76138 rotated from previous position = 0.0116 degrees 
    76139 atoms outside contour = 6009, contour level = 0.0040392 
    76140  
    76141 Position of 1xPflCD_Cage.pdb (#2) relative to 1unit_PflABCD.mrc (#5)
    76142 coordinates: 
    76143 Matrix rotation and translation 
    76144 0.93473343 0.35475057 0.02062632 -83.71657322 
    76145 -0.35516013 0.93455536 0.02162309 -7.63854291 
    76146 -0.01160564 -0.02753747 0.99955339 14.11922303 
    76147 Axis -0.06901274 0.04524798 -0.99658911 
    76148 Axis point -62.09609546 226.24343703 0.00000000 
    76149 Rotation angle (degrees) 20.86518068 
    76150 Shift along axis -8.63918276 
    76151  
    76152 
    76153 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    76154 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    76155 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    76156 > MOdels/3XPflAB_FlgY.pdb"
    76157 
    76158 Chain information for 3XPflAB_FlgY.pdb #6 
    76159 --- 
    76160 Chain | Description 
    76161 BN BO BV BW BX BY | No description available 
    76162 d j l | No description available 
    76163 e i k m | No description available 
    76164 n r s | No description available 
    76165  
    76166 
    76167 > select add #6
    76168 
    76169 63449 atoms, 64516 bonds, 4 pseudobonds, 7818 residues, 3 models selected 
    76170 
    76171 > select subtract #2
    76172 
    76173 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 2 models selected 
    76174 
    76175 > hide sel atoms
    76176 
    76177 > show sel cartoons
    76178 
    76179 > view matrix models
    76180 > #6,-0.85325,-0.37765,-0.35965,473.03,0.36819,0.052161,-0.92829,359.54,0.36933,-0.92448,0.094543,348.99
    76181 
    76182 > select add #2
    76183 
    76184 63449 atoms, 64516 bonds, 4 pseudobonds, 7818 residues, 3 models selected 
    76185 
    76186 > select subtract #2
    76187 
    76188 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 2 models selected 
    76189 
    76190 > select add #2
    76191 
    76192 63449 atoms, 64516 bonds, 4 pseudobonds, 7818 residues, 3 models selected 
    76193 
    76194 > show sel surfaces
    76195 
    76196 [Repeated 1 time(s)]
    76197 
    76198 > select subtract #2
    76199 
    76200 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 27 models selected 
    76201 
    76202 > hide sel surfaces
    76203 
    76204 > ui mousemode right "translate selected models"
    76205 
    76206 > view matrix models
    76207 > #6,-0.85325,-0.37765,-0.35965,683.92,0.36819,0.052161,-0.92829,755.71,0.36933,-0.92448,0.094543,627.45
    76208 
    76209 > hide #!5 models
    76210 
    76211 > select subtract #6
    76212 
    76213 16 models selected 
    76214 
    76215 > show #!220 models
    76216 
    76217 > hide #!220 models
    76218 
    76219 > show #!221 models
    76220 
    76221 > show #!220 models
    76222 
    76223 > hide #!221 models
    76224 
    76225 > show #!219 models
    76226 
    76227 > hide #!220 models
    76228 
    76229 > show #!221 models
    76230 
    76231 > hide #!219 models
    76232 
    76233 > show #!222 models
    76234 
    76235 > hide #!221 models
    76236 
    76237 > select add #6
    76238 
    76239 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 2 models selected 
    76240 
    76241 > ui mousemode right "rotate selected models"
    76242 
    76243 > view matrix models
    76244 > #6,-0.93213,-0.35311,0.080327,579.82,0.34092,-0.93047,-0.13417,747.47,0.12212,-0.097678,0.9877,280.21
    76245 
    76246 > view matrix models
    76247 > #6,-0.99919,0.022167,0.033662,530.26,-0.025248,-0.99525,-0.094066,810.62,0.031416,-0.09484,0.995,292.87
    76248 
    76249 > select subtract #6
    76250 
    76251 16 models selected 
    76252 
    76253 > select add #6.16
    76254 
    76255 5071 atoms, 621 residues, 1 model selected 
    76256 
    76257 > select subtract #6.16
    76258 
    76259 1 model selected 
    76260 
    76261 > select add #6.15
    76262 
    76263 5071 atoms, 621 residues, 1 model selected 
    76264 
    76265 > select subtract #6.15
    76266 
    76267 1 model selected 
    76268 
    76269 > select add #6.17
    76270 
    76271 5071 atoms, 621 residues, 1 model selected 
    76272 
    76273 > select add #6.14
    76274 
    76275 10174 atoms, 1254 residues, 2 models selected 
    76276 
    76277 > select add #6.7
    76278 
    76279 11409 atoms, 1409 residues, 3 models selected 
    76280 
    76281 > select add #6.6
    76282 
    76283 12644 atoms, 1564 residues, 4 models selected 
    76284 
    76285 > select add #6.8
    76286 
    76287 13836 atoms, 1713 residues, 5 models selected 
    76288 
    76289 > select subtract #6.8
    76290 
    76291 12644 atoms, 1564 residues, 6 models selected 
    76292 
    76293 > select add #6.11
    76294 
    76295 13836 atoms, 1713 residues, 5 models selected 
    76296 
    76297 > select subtract #6.11
    76298 
    76299 12644 atoms, 1564 residues, 6 models selected 
    76300 
    76301 > select add #6.13
    76302 
    76303 13836 atoms, 1713 residues, 5 models selected 
    76304 
    76305 > save /Users/shoichi/Desktop/1xSpoke_CJ_Motor.pdb selectedOnly true
    76306 
    76307 > hide #!6 models
    76308 
    76309 > select add #6
    76310 
    76311 46611 atoms, 47352 bonds, 4 pseudobonds, 5772 residues, 7 models selected 
    76312 
    76313 > select subtract #6
    76314 
    76315 16 models selected 
    76316 
    76317 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    76318 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    76319 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    76320 > MOdels/1xSpoke_CJ_Motor.pdb"
    76321 
    76322 Chain information for 1xSpoke_CJ_Motor.pdb #7 
    76323 --- 
    76324 Chain | Description 
    76325 BX BY | No description available 
    76326 l | No description available 
    76327 m | No description available 
    76328 s | No description available 
    76329  
    76330 
    76331 > select add #7
    76332 
    76333 13836 atoms, 14052 bonds, 1 pseudobond, 1713 residues, 2 models selected 
    76334 
    76335 > hide sel atoms
    76336 
    76337 > show sel cartoons
    76338 
    76339 > ui mousemode right "translate selected models"
    76340 
    76341 > view matrix models #7,1,0,0,-54.012,0,1,0,-20.553,0,0,1,-29.087
    76342 
    76343 > ui mousemode right "rotate selected models"
    76344 
    76345 > view matrix models
    76346 > #7,0.99857,-0.053266,-0.0039696,-22.221,0.053222,0.99853,-0.010383,-33.881,0.0045168,0.010157,0.99994,-36.281
    76347 
    76348 > ui mousemode right "translate selected models"
    76349 
    76350 > view matrix models
    76351 > #7,0.99857,-0.053266,-0.0039696,-17.363,0.053222,0.99853,-0.010383,-44.843,0.0045168,0.010157,0.99994,-42.768
    76352 
    76353 > fitmap #7 inMap #222
    76354 
    76355 Fit molecule 1xSpoke_CJ_Motor.pdb (#7) to map PflAB_wout_FlgYoverlap.mrc copy
    76356 gaussian copy (#222) using 13836 atoms 
    76357 average map value = 0.02438, steps = 204 
    76358 shifted from previous position = 6.65 
    76359 rotated from previous position = 6.75 degrees 
    76360 atoms outside contour = 4993, contour level = 0.0004499 
    76361  
    76362 Position of 1xSpoke_CJ_Motor.pdb (#7) relative to PflAB_wout_FlgYoverlap.mrc
    76363 copy gaussian copy (#222) coordinates: 
    76364 Matrix rotation and translation 
    76365 -0.99965128 -0.02618670 0.00340238 556.96158410 
    76366 0.02589175 -0.99730701 -0.06861736 808.84662249 
    76367 0.00519008 -0.06850534 0.99763725 -240.57212998 
    76368 Axis 0.00214975 -0.03430677 0.99940904 
    76369 Axis point 273.52667764 403.92860329 0.00000000 
    76370 Rotation angle (degrees) 178.50701132 
    76371 Shift along axis -266.98154610 
    76372  
    76373 
    76374 > fitmap #7 inMap #222
    76375 
    76376 Fit molecule 1xSpoke_CJ_Motor.pdb (#7) to map PflAB_wout_FlgYoverlap.mrc copy
    76377 gaussian copy (#222) using 13836 atoms 
    76378 average map value = 0.02438, steps = 44 
    76379 shifted from previous position = 0.0144 
    76380 rotated from previous position = 0.00619 degrees 
    76381 atoms outside contour = 4992, contour level = 0.0004499 
    76382  
    76383 Position of 1xSpoke_CJ_Motor.pdb (#7) relative to PflAB_wout_FlgYoverlap.mrc
    76384 copy gaussian copy (#222) coordinates: 
    76385 Matrix rotation and translation 
    76386 -0.99965351 -0.02609545 0.00344778 556.88186534 
    76387 0.02579779 -0.99731191 -0.06858150 808.85550471 
    76388 0.00522817 -0.06846880 0.99763956 -240.59375219 
    76389 Axis 0.00217063 -0.03428859 0.99940962 
    76390 Axis point 273.50781632 403.92144783 0.00000000 
    76391 Rotation angle (degrees) 178.51232305 
    76392 Shift along axis -266.97744043 
    76393  
    76394 
    76395 > fitmap #7 inMap #222
    76396 
    76397 Fit molecule 1xSpoke_CJ_Motor.pdb (#7) to map PflAB_wout_FlgYoverlap.mrc copy
    76398 gaussian copy (#222) using 13836 atoms 
    76399 average map value = 0.02438, steps = 48 
    76400 shifted from previous position = 0.0296 
    76401 rotated from previous position = 0.0109 degrees 
    76402 atoms outside contour = 4995, contour level = 0.0004499 
    76403  
    76404 Position of 1xSpoke_CJ_Motor.pdb (#7) relative to PflAB_wout_FlgYoverlap.mrc
    76405 copy gaussian copy (#222) coordinates: 
    76406 Matrix rotation and translation 
    76407 -0.99964881 -0.02627730 0.00342810 556.97440083 
    76408 0.02598082 -0.99731057 -0.06853194 808.79029165 
    76409 0.00521972 -0.06841881 0.99764303 -240.62901755 
    76410 Axis 0.00216360 -0.03426374 0.99941048 
    76411 Axis point 273.51713513 403.91728791 0.00000000 
    76412 Rotation angle (degrees) 178.50186152 
    76413 Shift along axis -266.99427237 
    76414  
    76415 
    76416 > show #!231 models
    76417 
    76418 > hide #!231 models
    76419 
    76420 > show #!231 models
    76421 
    76422 > hide #!231 models
    76423 
    76424 > select clear
    76425 
    76426 > save /Users/shoichi/Desktop/For_Composition-
    76427 > maps/Building_Whole_Model_09102025.cxs includeMaps true
    76428 
    76429 ——— End of log from Wed Sep 10 09:47:44 2025 ———
    76430 
    76431 opened ChimeraX session 
    76432 
    76433 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    76434 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    76435 > review/Updated_Figures/09092025/For_Composition-maps/Individual-
    76436 > MOdels/CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb"
    76437 
    76438 Chain information for CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb 
    76439 --- 
    76440 Chain | Description 
    76441 8.2/A 8.2/B 8.2/C 8.2/D 8.2/E | No description available 
    76442 8.3/A 8.3/B 8.3/C 8.3/D 8.3/E 8.3/F 8.3/G 8.3/H 8.3/I 8.3/J | No description available 
    76443 8.1/K | No description available 
    76444 8.1/L | No description available 
    76445  
    76446 
    76447 > show #!5 models
    76448 
    76449 > hide #!222 models
    76450 
    76451 > select add #8
    76452 
    76453 22449 atoms, 22826 bonds, 2863 residues, 4 models selected 
    76454 
    76455 > hide sel atoms
    76456 
    76457 > show sel cartoons
    76458 
    76459 > view matrix models #8,1,0,0,-1.3908,0,1,0,28.13,0,0,1,-68.149
    76460 
    76461 > view matrix models #8,1,0,0,-79.74,0,1,0,194.81,0,0,1,-74.266
    76462 
    76463 > view matrix models #8,1,0,0,-53.901,0,1,0,217.25,0,0,1,-20.022
    76464 
    76465 > view matrix models #8,1,0,0,-90.497,0,1,0,182.48,0,0,1,-19.698
    76466 
    76467 > view matrix models #8,1,0,0,-100.46,0,1,0,189.34,0,0,1,-6.9565
    76468 
    76469 > combine #8
    76470 
    76471 Remapping chain ID 'A' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'M' 
    76472 Remapping chain ID 'B' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'N' 
    76473 Remapping chain ID 'C' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'O' 
    76474 Remapping chain ID 'D' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'P' 
    76475 Remapping chain ID 'E' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'Q' 
    76476 
    76477 > select subtract #8
    76478 
    76479 Nothing selected 
    76480 
    76481 > select add #9
    76482 
    76483 22449 atoms, 22826 bonds, 2863 residues, 1 model selected 
    76484 
    76485 > ui tool show "Fit in Map"
    76486 
    76487 > fitmap #9 inMap #5
    76488 
    76489 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    76490 average map value = 0.01753, steps = 376 
    76491 shifted from previous position = 3.05 
    76492 rotated from previous position = 47.8 degrees 
    76493 atoms outside contour = 6935, contour level = 0.0040392 
    76494  
    76495 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    76496 Matrix rotation and translation 
    76497 -0.37231233 -0.92574324 -0.06620400 689.67970535 
    76498 0.92810605 -0.37123742 -0.02831844 -45.51260744 
    76499 0.00163820 -0.07198764 0.99740417 -211.57576799 
    76500 Axis -0.02353369 -0.03656071 0.99905429 
    76501 Axis point 360.53272668 204.80726333 0.00000000 
    76502 Rotation angle (degrees) 111.90524931 
    76503 Shift along axis -225.94241130 
    76504  
    76505 
    76506 > fitmap #9 inMap #5
    76507 
    76508 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    76509 average map value = 0.01753, steps = 44 
    76510 shifted from previous position = 0.0386 
    76511 rotated from previous position = 0.201 degrees 
    76512 atoms outside contour = 6938, contour level = 0.0040392 
    76513  
    76514 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    76515 Matrix rotation and translation 
    76516 -0.36905755 -0.92703861 -0.06630186 689.01362618 
    76517 0.92940486 -0.36798102 -0.02822339 -47.00421936 
    76518 0.00176635 -0.07203732 0.99740037 -211.59378907 
    76519 Axis -0.02357860 -0.03663111 0.99905066 
    76520 Axis point 360.77496452 204.70035063 0.00000000 
    76521 Rotation angle (degrees) 111.70446120 
    76522 Shift along axis -225.91707373 
    76523  
    76524 
    76525 > hide #!8 models
    76526 
    76527 > select subtract #9
    76528 
    76529 Nothing selected 
    76530 
    76531 > show #!3 models
    76532 
    76533 > view orient
    76534 
    76535 > sym #9 C17 copies true center #3
    76536 
    76537 Made 17 copies for combination symmetry C17 
    76538 
    76539 > close #10
    76540 
    76541 > show #!8 models
    76542 
    76543 > select add #8.3
    76544 
    76545 8580 atoms, 8710 bonds, 1070 residues, 1 model selected 
    76546 
    76547 > select subtract #8.3
    76548 
    76549 Nothing selected 
    76550 
    76551 > select add #8.1
    76552 
    76553 4099 atoms, 4171 bonds, 518 residues, 1 model selected 
    76554 
    76555 > select subtract #8.1
    76556 
    76557 Nothing selected 
    76558 
    76559 > select add #8.2
    76560 
    76561 9770 atoms, 9945 bonds, 1275 residues, 1 model selected 
    76562 
    76563 > color #8.2 #a69b32ff models
    76564 
    76565 > color #8.1 #b86006ff models
    76566 
    76567 > color #8.3 #e2cf7bff models
    76568 
    76569 > select clear
    76570 
    76571 > close #9
    76572 
    76573 > combine #8
    76574 
    76575 Remapping chain ID 'A' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'M' 
    76576 Remapping chain ID 'B' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'N' 
    76577 Remapping chain ID 'C' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'O' 
    76578 Remapping chain ID 'D' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'P' 
    76579 Remapping chain ID 'E' in CJ_Stator_Complex_with6ykm_Bb_CjFliL.pdb #8.3 to 'Q' 
    76580 
    76581 > hide #!8 models
    76582 
    76583 > fitmap #9 inMap #5
    76584 
    76585 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    76586 average map value = 0.01753, steps = 376 
    76587 shifted from previous position = 3.05 
    76588 rotated from previous position = 47.8 degrees 
    76589 atoms outside contour = 6935, contour level = 0.0040392 
    76590  
    76591 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    76592 Matrix rotation and translation 
    76593 -0.37231233 -0.92574324 -0.06620400 689.67970535 
    76594 0.92810605 -0.37123742 -0.02831844 -45.51260744 
    76595 0.00163820 -0.07198764 0.99740417 -211.57576799 
    76596 Axis -0.02353369 -0.03656071 0.99905429 
    76597 Axis point 360.53272668 204.80726333 0.00000000 
    76598 Rotation angle (degrees) 111.90524931 
    76599 Shift along axis -225.94241130 
    76600  
    76601 
    76602 > fitmap #9 inMap #5
    76603 
    76604 Fit molecule combination (#9) to map 1unit_PflABCD.mrc (#5) using 22449 atoms 
    76605 average map value = 0.01753, steps = 44 
    76606 shifted from previous position = 0.0386 
    76607 rotated from previous position = 0.201 degrees 
    76608 atoms outside contour = 6938, contour level = 0.0040392 
    76609  
    76610 Position of combination (#9) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    76611 Matrix rotation and translation 
    76612 -0.36905755 -0.92703861 -0.06630186 689.01362618 
    76613 0.92940486 -0.36798102 -0.02822339 -47.00421936 
    76614 0.00176635 -0.07203732 0.99740037 -211.59378907 
    76615 Axis -0.02357860 -0.03663111 0.99905066 
    76616 Axis point 360.77496452 204.70035063 0.00000000 
    76617 Rotation angle (degrees) 111.70446120 
    76618 Shift along axis -225.91707373 
    76619  
    76620 
    76621 > hide #!7 models
    76622 
    76623 > show #!7 models
    76624 
    76625 > split #7
    76626 
    76627 Split 1xSpoke_CJ_Motor.pdb (#7) into 5 models 
    76628 Chain information for 1xSpoke_CJ_Motor.pdb BX #7.1 
    76629 --- 
    76630 Chain | Description 
    76631 BX | No description available 
    76632  
    76633 Chain information for 1xSpoke_CJ_Motor.pdb BY #7.2 
    76634 --- 
    76635 Chain | Description 
    76636 BY | No description available 
    76637  
    76638 Chain information for 1xSpoke_CJ_Motor.pdb l #7.3 
    76639 --- 
    76640 Chain | Description 
    76641 l | No description available 
    76642  
    76643 Chain information for 1xSpoke_CJ_Motor.pdb m #7.4 
    76644 --- 
    76645 Chain | Description 
    76646 m | No description available 
    76647  
    76648 Chain information for 1xSpoke_CJ_Motor.pdb s #7.5 
    76649 --- 
    76650 Chain | Description 
    76651 s | No description available 
    76652  
    76653 
    76654 > color #7.5 #ff0002ff models
    76655 
    76656 > color #7.3 #ff0002ff models
    76657 
    76658 > color #7.4 magenta models
    76659 
    76660 > select add #7.1
    76661 
    76662 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    76663 
    76664 > select subtract #7.1
    76665 
    76666 Nothing selected 
    76667 
    76668 > select add #7.2
    76669 
    76670 1235 atoms, 1241 bonds, 155 residues, 1 model selected 
    76671 
    76672 > select subtract #7.2
    76673 
    76674 Nothing selected 
    76675 
    76676 > color #7.2 snow models
    76677 
    76678 > color #7.1 #dbb3e2ff models
    76679 
    76680 > select clear
    76681 
    76682 > hide #!5 models
    76683 
    76684 > color #2.9 #7b80ffff
    76685 
    76686 > color #2.7 #adffc1ff models
    76687 
    76688 > color #2.8 #adffc1ff models
    76689 
    76690 > color #2.2 #0b6dffff models
    76691 
    76692 > color #2.5 #0b6dffff models
    76693 
    76694 > color #2.2 #0b6dffff models
    76695 
    76696 [Repeated 1 time(s)]
    76697 
    76698 > hide #2.2 models
    76699 
    76700 > show #2.2 models
    76701 
    76702 > hide #2.3 models
    76703 
    76704 > show #2.3 models
    76705 
    76706 > hide #2.6 models
    76707 
    76708 > show #2.6 models
    76709 
    76710 > color #2.3 #20e0ffff models
    76711 
    76712 > color #2.6 #20e0ffff models
    76713 
    76714 > color #2.9 #a7c5d2ff models
    76715 
    76716 > select add #2.4
    76717 
    76718 2637 atoms, 319 residues, 1 model selected 
    76719 
    76720 > select add #2.1
    76721 
    76722 5274 atoms, 638 residues, 2 models selected 
    76723 
    76724 > color #2.4 #a7c5d2ff models
    76725 
    76726 > color #2.1 #a7c5d2ff models
    76727 
    76728 > color #2.9 #7b80ffff
    76729 
    76730 > select add #2
    76731 
    76732 16838 atoms, 17164 bonds, 2046 residues, 3 models selected 
    76733 
    76734 > hide sel surfaces
    76735 
    76736 [Repeated 2 time(s)]
    76737 
    76738 > show sel surfaces
    76739 
    76740 > hide sel surfaces
    76741 
    76742 > show sel surfaces
    76743 
    76744 > hide sel surfaces
    76745 
    76746 > select clear
    76747 
    76748 > color #2.9 #7b80ffff models
    76749 
    76750 > select add #2.9
    76751 
    76752 2854 atoms, 356 residues, 1 model selected 
    76753 
    76754 > color sel #7b80ffff models
    76755 
    76756 > save /Users/shoichi/Desktop/For_Composition-
    76757 > maps/Building_Whole_Model_09102025.cxs includeMaps true
    76758 
    76759 ——— End of log from Wed Sep 10 10:14:24 2025 ———
    76760 
    76761 opened ChimeraX session 
    76762 
    76763 > open /Users/shoichi/Desktop/For_Composition-maps/Individual-
    76764 > MOdels/REDO_PflCD-models_08312025.pdb
    76765 
    76766 Summary of feedback from opening /Users/shoichi/Desktop/For_Composition-
    76767 maps/Individual-MOdels/REDO_PflCD-models_08312025.pdb 
    76768 --- 
    76769 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY V 2 LEU V 49 1 48 
    76770 Start residue of secondary structure not found: HELIX 2 2 LEU V 50 GLU V 91 1
    76771 42 
    76772 Start residue of secondary structure not found: HELIX 3 3 ASN V 93 GLU V 100 1
    76773 8 
    76774 Start residue of secondary structure not found: HELIX 4 4 ILE V 105 PHE V 111
    76775 1 7 
    76776 Start residue of secondary structure not found: HELIX 5 5 LEU V 112 LYS V 114
    76777 1 3 
    76778 112 messages similar to the above omitted 
    76779  
    76780 Chain information for REDO_PflCD-models_08312025.pdb 
    76781 --- 
    76782 Chain | Description 
    76783 10.4/A 10.7/A | No description available 
    76784 10.5/B 10.8/B | No description available 
    76785 10.6/C 10.9/C | No description available 
    76786 10.3/L 10.1/X | No description available 
    76787 10.2/c | No description available 
    76788  
    76789 
    76790 > select add #10
    76791 
    76792 19692 atoms, 17164 bonds, 2402 residues, 11 models selected 
    76793 
    76794 > close #2
    76795 
    76796 > close #10
    76797 
    76798 > open /Users/shoichi/Desktop/For_Composition-maps/Individual-
    76799 > MOdels/REDO_PflCD-models_08312025.pdb
    76800 
    76801 Summary of feedback from opening /Users/shoichi/Desktop/For_Composition-
    76802 maps/Individual-MOdels/REDO_PflCD-models_08312025.pdb 
    76803 --- 
    76804 warnings | Start residue of secondary structure not found: HELIX 1 1 GLY V 2 LEU V 49 1 48 
    76805 Start residue of secondary structure not found: HELIX 2 2 LEU V 50 GLU V 91 1
    76806 42 
    76807 Start residue of secondary structure not found: HELIX 3 3 ASN V 93 GLU V 100 1
    76808 8 
    76809 Start residue of secondary structure not found: HELIX 4 4 ILE V 105 PHE V 111
    76810 1 7 
    76811 Start residue of secondary structure not found: HELIX 5 5 LEU V 112 LYS V 114
    76812 1 3 
    76813 112 messages similar to the above omitted 
    76814  
    76815 Chain information for REDO_PflCD-models_08312025.pdb 
    76816 --- 
    76817 Chain | Description 
    76818 2.4/A 2.7/A | No description available 
    76819 2.5/B 2.8/B | No description available 
    76820 2.6/C 2.9/C | No description available 
    76821 2.3/L 2.1/X | No description available 
    76822 2.2/c | No description available 
    76823  
    76824 
    76825 > comvine #2
    76826 
    76827 Unknown command: comvine #2 
    76828 
    76829 > combine #2
    76830 
    76831 Remapping chain ID 'A' in REDO_PflCD-models_08312025.pdb #2.7 to 'D' 
    76832 Remapping chain ID 'B' in REDO_PflCD-models_08312025.pdb #2.8 to 'E' 
    76833 Remapping chain ID 'C' in REDO_PflCD-models_08312025.pdb #2.9 to 'F' 
    76834 
    76835 > hide #!2 models
    76836 
    76837 > select add #10
    76838 
    76839 16838 atoms, 17164 bonds, 2046 residues, 1 model selected 
    76840 
    76841 > show #!5 models
    76842 
    76843 > view matrix models #10,1,0,0,-66.119,0,1,0,297.99,0,0,1,268.4
    76844 
    76845 > ui mousemode right "rotate selected models"
    76846 
    76847 > view matrix models
    76848 > #10,-0.95072,0.31003,-0.0040457,468.78,-0.29554,-0.91006,-0.2906,767.92,-0.093776,-0.27508,0.95684,351.74
    76849 
    76850 > view matrix models
    76851 > #10,-0.9545,0.29649,-0.032018,478.35,-0.29182,-0.95074,-0.1046,732.41,-0.061454,-0.090496,0.994,303.19
    76852 
    76853 > ui mousemode right "translate selected models"
    76854 
    76855 > view matrix models
    76856 > #10,-0.9545,0.29649,-0.032018,452.79,-0.29182,-0.95074,-0.1046,737.3,-0.061454,-0.090496,0.994,298.1
    76857 
    76858 > view matrix models
    76859 > #10,-0.9545,0.29649,-0.032018,455.76,-0.29182,-0.95074,-0.1046,720.62,-0.061454,-0.090496,0.994,275.89
    76860 
    76861 > ui mousemode right "rotate selected models"
    76862 
    76863 > view matrix models
    76864 > #10,-0.95587,0.29187,-0.033485,457.26,-0.2895,-0.95519,-0.061727,711.18,-0.05,-0.049309,0.99753,264.84
    76865 
    76866 > view matrix models
    76867 > #10,-0.95708,0.28776,-0.034602,458.55,-0.28705,-0.95762,-0.023947,702.49,-0.040026,-0.012987,0.99911,255.47
    76868 
    76869 > view matrix models
    76870 > #10,-0.96072,0.27506,-0.036986,462.28,-0.27734,-0.95649,0.090607,674.05,-0.010455,0.097305,0.9952,229.16
    76871 
    76872 > ui mousemode right "translate selected models"
    76873 
    76874 > view matrix models
    76875 > #10,-0.96072,0.27506,-0.036986,453.38,-0.27734,-0.95649,0.090607,674.4,-0.010455,0.097305,0.9952,223.09
    76876 
    76877 > ui tool show "Fit in Map"
    76878 
    76879 > fitmap #10 inMap #5
    76880 
    76881 Fit molecule combination (#10) to map 1unit_PflABCD.mrc (#5) using 16838 atoms 
    76882 average map value = 0.01933, steps = 148 
    76883 shifted from previous position = 0.6 
    76884 rotated from previous position = 6.51 degrees 
    76885 atoms outside contour = 6009, contour level = 0.0040392 
    76886  
    76887 Position of combination (#10) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    76888 Matrix rotation and translation 
    76889 0.99978746 -0.01369900 0.01540661 -1.96965866 
    76890 0.01385561 0.99985294 -0.01010505 -0.38605904 
    76891 -0.01526592 0.01031637 0.99983024 3.93373941 
    76892 Axis 0.44382919 0.66662167 0.59885824 
    76893 Axis point 207.81185233 0.00000000 165.97832449 
    76894 Rotation angle (degrees) 1.31826030 
    76895 Shift along axis 1.22420494 
    76896  
    76897 
    76898 > fitmap #10 inMap #5
    76899 
    76900 Fit molecule combination (#10) to map 1unit_PflABCD.mrc (#5) using 16838 atoms 
    76901 average map value = 0.01933, steps = 60 
    76902 shifted from previous position = 0.0104 
    76903 rotated from previous position = 0.0484 degrees 
    76904 atoms outside contour = 6008, contour level = 0.0040392 
    76905  
    76906 Position of combination (#10) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    76907 Matrix rotation and translation 
    76908 0.99977046 -0.01439237 0.01587084 -1.95437557 
    76909 0.01455160 0.99984447 -0.00996391 -0.62329819 
    76910 -0.01572497 0.01019256 0.99982440 4.10187121 
    76911 Axis 0.42566169 0.66723604 0.61123498 
    76912 Axis point 210.11065821 0.00000000 159.95939567 
    76913 Rotation angle (degrees) 1.35669785 
    76914 Shift along axis 1.25941735 
    76915  
    76916 
    76917 > fitmap #10 inMap #5
    76918 
    76919 Fit molecule combination (#10) to map 1unit_PflABCD.mrc (#5) using 16838 atoms 
    76920 average map value = 0.01933, steps = 48 
    76921 shifted from previous position = 0.0231 
    76922 rotated from previous position = 0.023 degrees 
    76923 atoms outside contour = 6008, contour level = 0.0040392 
    76924  
    76925 Position of combination (#10) relative to 1unit_PflABCD.mrc (#5) coordinates: 
    76926 Matrix rotation and translation 
    76927 0.99976392 -0.01471991 0.01598165 -1.91902377 
    76928 0.01487698 0.99984175 -0.00975445 -0.78952502 
    76929 -0.01583553 0.00998990 0.99982470 4.17352203 
    76930 Axis 0.41366794 0.66660833 0.62009045 
    76931 Axis point 212.18158954 0.00000000 156.02708131 
    76932 Rotation angle (degrees) 1.36749217 
    76933 Shift along axis 1.26781860 
    76934  
    76935 
    76936 > select clear
    76937 
    76938 > select add #10
    76939 
    76940 16838 atoms, 17164 bonds, 2046 residues, 1 model selected 
    76941 Alignment identifier is 1 
    76942 Alignment identifier is 10/c 
    76943 Alignment identifier is 2 
    76944 Alignment identifier is 3 
    76945 Alignment identifier is 4 
    76946 
    76947 > select #10/C,F:148-189
    76948 
    76949 684 atoms, 694 bonds, 84 residues, 1 model selected 
    76950 
    76951 > select #10/C,F
    76952 
    76953 3084 atoms, 3126 bonds, 378 residues, 1 model selected 
    76954 
    76955 > color sel #20e0ffff models
    76956 
    76957 > split #10
    76958 
    76959 Split combination (#10) into 9 models 
    76960 Chain information for combination A #10.1 
    76961 --- 
    76962 Chain | Description 
    76963 A | No description available 
    76964  
    76965 Chain information for combination B #10.2 
    76966 --- 
    76967 Chain | Description 
    76968 B | No description available 
    76969  
    76970 Chain information for combination C #10.3 
    76971 --- 
    76972 Chain | Description 
    76973 C | No description available 
    76974  
    76975 Chain information for combination D #10.4 
    76976 --- 
    76977 Chain | Description 
    76978 D | No description available 
    76979  
    76980 Chain information for combination E #10.5 
    76981 --- 
    76982 Chain | Description 
    76983 E | No description available 
    76984  
    76985 Chain information for combination F #10.6 
    76986 --- 
    76987 Chain | Description 
    76988 F | No description available 
    76989  
    76990 Chain information for combination L #10.7 
    76991 --- 
    76992 Chain | Description 
    76993 L | No description available 
    76994  
    76995 Chain information for combination X #10.8 
    76996 --- 
    76997 Chain | Description 
    76998 X | No description available 
    76999  
    77000 Chain information for combination c #10.9 
    77001 --- 
    77002 Chain | Description 
    77003 c | No description available 
    77004  
    77005 
    77006 > select add #10.1
    77007 
    77008 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    77009 
    77010 > select add #10.2
    77011 
    77012 4095 atoms, 4174 bonds, 494 residues, 2 models selected 
    77013 
    77014 > select subtract #10.2
    77015 
    77016 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    77017 
    77018 > select add #10.4
    77019 
    77020 5274 atoms, 5372 bonds, 638 residues, 2 models selected 
    77021 
    77022 > color #10.1 #a7c5d2ff models
    77023 
    77024 > color #10.3 #a7c5d2ff models
    77025 
    77026 > color #10.4 #a7c5d2ff models
    77027 
    77028 > select clear
    77029 
    77030 > select add #10.2
    77031 
    77032 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    77033 
    77034 > select add #10.6
    77035 
    77036 3000 atoms, 3051 bonds, 364 residues, 2 models selected 
    77037 
    77038 > select subtract #10.6
    77039 
    77040 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    77041 
    77042 > select add #10.7
    77043 
    77044 2813 atoms, 2876 bonds, 337 residues, 2 models selected 
    77045 
    77046 > select subtract #10.7
    77047 
    77048 1458 atoms, 1488 bonds, 175 residues, 1 model selected 
    77049 
    77050 > select add #10.5
    77051 
    77052 2916 atoms, 2976 bonds, 350 residues, 2 models selected 
    77053 
    77054 > color #10.2 #0b6dffff models
    77055 
    77056 > color #10.5 #0b6dffff models
    77057 
    77058 > select clear
    77059 
    77060 > select add #10.4
    77061 
    77062 2637 atoms, 2686 bonds, 319 residues, 1 model selected 
    77063 
    77064 > select subtract #10.4
    77065 
    77066 Nothing selected 
    77067 
    77068 > select add #10.3
    77069 
    77070 1542 atoms, 1563 bonds, 189 residues, 1 model selected 
    77071 
    77072 > select add #10.6
    77073 
    77074 3084 atoms, 3126 bonds, 378 residues, 2 models selected 
    77075 
    77076 > color #10.6 #20e0ffff models
    77077 
    77078 > color #10.3 #20e0ffff models
    77079 
    77080 > select clear
    77081 
    77082 > select add #10.6
    77083 
    77084 1542 atoms, 1563 bonds, 189 residues, 1 model selected 
    77085 
    77086 > select subtract #10.6
    77087 
    77088 Nothing selected 
    77089 
    77090 > select add #10.7
    77091 
    77092 1355 atoms, 1388 bonds, 162 residues, 1 model selected 
    77093 
    77094 > select add #10.8
    77095 
    77096 2710 atoms, 2776 bonds, 324 residues, 2 models selected 
    77097 
    77098 > color #10.7 #adffc1ff models
    77099 
    77100 > color #10.8 #adffc1ff models
    77101 
    77102 > color #10.9 #7b80ffff models
    77103 
    77104 > select clear
    77105 
    77106 > combine #10
    77107 
    77108 > hide #!10 models
    77109 
    77110 > show #!10 models
    77111 
    77112 > hide #!10 models
    77113 
    77114 > select add #9
    77115 
    77116 22449 atoms, 22826 bonds, 2863 residues, 1 model selected 
    77117 
    77118 > select subtract #9
    77119 
    77120 Nothing selected 
    77121 
    77122 > select add #7
    77123 
    77124 13836 atoms, 14052 bonds, 1 pseudobond, 1713 residues, 7 models selected 
    77125 
    77126 > select subtract #7
    77127 
    77128 Nothing selected 
    77129 
    77130 > combine #7
    77131 
    77132 > hide #!7 models
    77133 
    77134 > hide #!5 models
    77135 
    77136 > view orient
    77137 
    77138 > sym #9 C17 copies true center #3
    77139 
    77140 Made 17 copies for combination symmetry C17 
    77141 
    77142 > sym #11 C17 copies true center #3
    77143 
    77144 Made 17 copies for combination symmetry C17 
    77145 
    77146 > sym #12 C17 copies true center #3
    77147 
    77148 Made 17 copies for combination symmetry C17 
    77149 
    77150 > open /Users/shoichi/Desktop/For_Composition-maps/Individual-
    77151 > MOdels/HP_FliF.pdb
    77152 
    77153 Summary of feedback from opening /Users/shoichi/Desktop/For_Composition-
    77154 maps/Individual-MOdels/HP_FliF.pdb 
    77155 --- 
    77156 warnings | Start residue of secondary structure not found: HELIX 270 270 ILEAA 227 VALAA 261 1 35 
    77157 Start residue of secondary structure not found: HELIX 271 271 LYSAA 264 LYSAA
    77158 266 1 3 
    77159 Start residue of secondary structure not found: HELIX 272 272 ASPAA 392 ILEAA
    77160 406 1 15 
    77161 Start residue of secondary structure not found: HELIX 273 273 SERAA 436 VALAA
    77162 489 1 54 
    77163 Start residue of secondary structure not found: HELIX 274 274 ILEAB 227 VALAB
    77164 261 1 35 
    77165 242 messages similar to the above omitted 
    77166  
    77167 Chain information for HP_FliF.pdb #16 
    77168 --- 
    77169 Chain | Description 
    77170 0 1 2 3 4 5 6 7 8 9 AA AB AC AD AE AF AG AH AI AJ AK AL AM AN AO AP AQ AR AS q r s t u v w x y z | No description available 
    77171 A B C D E F G H I J K L M N O P Q R S T U | No description available 
    77172 V W X Y Z a b c d e f g h i j k l m n o p | No description available 
    77173  
    77174 
    77175 > color #16 #348e42ff models
    77176 
    77177 > lighting soft
    77178 
    77179 > lighting simple
    77180 
    77181 > save /Users/shoichi/Desktop/For_Composition-
    77182 > maps/Building_Whole_Model_09102025.cxs includeMaps true
    77183 
    77184 [Repeated 1 time(s)]
    77185 
    77186 > hide #!13 models
    77187 
    77188 > hide #!14 models
    77189 
    77190 > hide #!15 models
    77191 
    77192 > hide #16 models
    77193 
    77194 > lighting soft
    77195 
    77196 > view orient
    77197 
    77198 > turn x 90
    77199 
    77200 [Repeated 2 time(s)]
    77201 
    77202 > show #!4 models
    77203 
    77204 > show #!5 models
    77205 
    77206 > hide #!5 models
    77207 
    77208 > show #!82-232 models
    77209 
    77210 > hide #!82-232 models
    77211 
    77212 > hide #!3 models
    77213 
    77214 > hide #!4 models
    77215 
    77216 > show #!109 models
    77217 
    77218 > volume #!109 showOutlineBox true
    77219 
    77220 > ui mousemode right "crop volume"
    77221 
    77222 > volume #109 region 0,0,0,199,199,62
    77223 
    77224 > volume #109 region 0,0,0,199,199,199
    77225 
    77226 > volume #109 region 32,0,0,199,199,199
    77227 
    77228 > volume #109 region 0,0,0,199,199,199
    77229 
    77230 > volume #109 region 0,0,0,199,199,165
    77231 
    77232 > volume #109 region 0,0,65,199,199,165
    77233 
    77234 > volume #109 region 0,0,0,199,199,165
    77235 
    77236 > volume #!109 showOutlineBox false
    77237 
    77238 > select ~sel & ##selected
    77239 
    77240 Nothing selected 
    77241 
    77242 > volume #107-123 region 0,0,0,199,199,165
    77243 
    77244 > show #!82-232 models
    77245 
    77246 > show #!3 models
    77247 
    77248 > show #!4 models
    77249 
    77250 Drag select of 82 Exp_ATP.mrc gaussian 
    77251 
    77252 > select subtract #82
    77253 
    77254 Nothing selected 
    77255 
    77256 > hide #!82 models
    77257 
    77258 > view orient
    77259 
    77260 > turn x 90
    77261 
    77262 [Repeated 2 time(s)]
    77263 
    77264 > turn z-0.1 90
    77265 
    77266 Expected an axis vector or a keyword 
    77267 
    77268 > turn z-0.1
    77269 
    77270 Expected an axis vector or a keyword 
    77271 
    77272 > turn z -0.1
    77273 
    77274 [Repeated 1 time(s)]
    77275 
    77276 > view name P1
    77277 
    77278 > save /Users/shoichi/Desktop/Comp_1a.png supersample 2 transparentBackground
    77279 > true
    77280 
    77281 > turn x 15
    77282 
    77283 > turn x -15
    77284 
    77285 > turn x 10
    77286 
    77287 > save /Users/shoichi/Desktop/For_Composition-
    77288 > maps/Building_Whole_Model_09102025.cxs includeMaps true
    77289 
    77290 > save /Users/shoichi/Desktop/For_Composition-
    77291 > maps/Building_Whole_Model_09102025_Backup.cxs includeMaps true
    77292 
    77293 ——— End of log from Wed Sep 10 10:46:36 2025 ———
    77294 
    77295 opened ChimeraX session 
    77296 
    77297 > view orient
    77298 
    77299 > show #!13 models
    77300 
    77301 > hide #!13 models
    77302 
    77303 > turn x 90
    77304 
    77305 [Repeated 2 time(s)]
    77306 
    77307 > turn y 90
    77308 
    77309 > turn x 25
    77310 
    77311 > turn x -25
    77312 
    77313 > turn x 15
    77314 
    77315 [Repeated 1 time(s)]
    77316 
    77317 > turn x -15
    77318 
    77319 [Repeated 1 time(s)]
    77320 
    77321 > turn x 10
    77322 
    77323 > view name P1
    77324 
    77325 > save /Users/shoichitachiyama/Desktop/Side-10.png supersample 2
    77326 > transparentBackground true
    77327 
    77328 > hide #!88 models
    77329 
    77330 > hide #!209 models
    77331 
    77332 The cached device pixel ratio value was stale on window expose. Please file a
    77333 QTBUG which explains how to reproduce. 
    77334 
    77335 > hide #!124-174 models
    77336 
    77337 > hide #!83 models
    77338 
    77339 > hide #!3 models
    77340 
    77341 > turn x 10
    77342 
    77343 [Repeated 1 time(s)]
    77344 
    77345 > view orient
    77346 
    77347 > turn x 90
    77348 
    77349 [Repeated 2 time(s)]
    77350 
    77351 > turn y 90
    77352 
    77353 > turn x 30
    77354 
    77355 > turn x -30
    77356 
    77357 > turn x 45
    77358 
    77359 > save /Users/shoichitachiyama/Desktop/Side-45.png supersample 2
    77360 > transparentBackground true
    77361 
    77362 > turn x 45
    77363 
    77364 > save /Users/shoichitachiyama/Desktop/Side-90.png supersample 2
    77365 > transparentBackground true
    77366 
    77367 > save /Users/shoichitachiyama/Desktop/Composition-with-color.cxs includeMaps
    77368 > true
    77369 
    77370 ——— End of log from Sat Sep 20 19:10:23 2025 ———
    77371 
    77372 opened ChimeraX session 
    77373 
    77374 > color #107 #0b6dfffd models
    77375 
    77376 > color #107 #0b6dffff models
    77377 
    77378 > color #107 #5A97FF models
    77379 
    77380 > color #107 #73E0FF models
    77381 
    77382 > color #107 #5A97FF models
    77383 
    77384 > color #107 #20e0ffff models
    77385 
    77386 > color #107 #adffc1ff models
    77387 
    77388 > color #107 #20e0ffff models
    77389 
    77390 > color #107 #1fffffff models
    77391 
    77392 > color #107 #2c90dfff models
    77393 
    77394 > color #107 #5A97FF models
    77395 
    77396 > color #107-123 #5A97FF models
    77397 
    77398 > hide #!87 models
    77399 
    77400 > color #124 #FFBF1D models
    77401 
    77402 > show #!124 models
    77403 
    77404 > color #124-140 #FFBF1D models
    77405 
    77406 > show #!125 models
    77407 
    77408 > show #!126 models
    77409 
    77410 > show #!127 models
    77411 
    77412 > show #!128 models
    77413 
    77414 > show #!129 models
    77415 
    77416 > show #!130 models
    77417 
    77418 > show #!131 models
    77419 
    77420 > show #!132 models
    77421 
    77422 > show #!133 models
    77423 
    77424 > show #!134 models
    77425 
    77426 > show #!135 models
    77427 
    77428 > show #!136 models
    77429 
    77430 > show #!137 models
    77431 
    77432 > show #!138 models
    77433 
    77434 > show #!139 models
    77435 
    77436 > show #!140 models
    77437 
    77438 > show #!140-157 models
    77439 
    77440 > color #141-157 #17198B models
    77441 
    77442 > lighting soft
    77443 
    77444 > show #!140-174 models
    77445 
    77446 > color #158-174 #765FF3 models
    77447 
    77448 > color #175-191 #714B0E models
    77449 
    77450 > color #192-208 #FFFF00 models
    77451 
    77452 > show #!209 models
    77453 
    77454 > show #!3 models
    77455 
    77456 > view P1
    77457 
    77458 > view orient
    77459 
    77460 > show #!88 models
    77461 
    77462 > turn x 90
    77463 
    77464 [Repeated 2 time(s)]
    77465 
    77466 > turn y 90
    77467 
    77468 [Repeated 4 time(s)]
    77469 
    77470 > view orient
    77471 
    77472 > turn x 90
    77473 
    77474 [Repeated 2 time(s)]
    77475 
    77476 > turn y 90
    77477 
    77478 > view P10
    77479 
    77480 Expected an objects specifier or a view name or a keyword 
    77481 
    77482 > view name P10
    77483 
    77484 > turn z 0.1
    77485 
    77486 > turn z -0.1
    77487 
    77488 [Repeated 2 time(s)]
    77489 
    77490 > view name P10
    77491 
    77492 > save /Users/shoichi/Desktop/Fig.1a-09072025.png supersample 2
    77493 > transparentBackground true
    77494 
    77495 > turn x -90
    77496 
    77497 > turn x 90
    77498 
    77499 [Repeated 1 time(s)]
    77500 
    77501 > hide #!88 models
    77502 
    77503 > hide #!89 models
    77504 
    77505 > hide #!209 models
    77506 
    77507 > hide #!158-174 models
    77508 
    77509 > ui tool show "Side View"
    77510 
    77511 > save /Users/shoichi/Desktop/Fig.1b-09072025.png supersample 2
    77512 > transparentBackground true
    77513 
    77514 > hide #!3 models
    77515 
    77516 > hide #!4 models
    77517 
    77518 > hide #!107-157 models
    77519 
    77520 > hide #!175-208 models
    77521 
    77522 > hide #!232 models
    77523 
    77524 > hide #!214 models
    77525 
    77526 > hide #!215 models
    77527 
    77528 > hide #!216 models
    77529 
    77530 > hide #!217 models
    77531 
    77532 > hide #!218 models
    77533 
    77534 > hide #!219 models
    77535 
    77536 > hide #!221 models
    77537 
    77538 > hide #!220 models
    77539 
    77540 > hide #!222 models
    77541 
    77542 > hide #!223 models
    77543 
    77544 > hide #!224 models
    77545 
    77546 > hide #!225 models
    77547 
    77548 > hide #!226 models
    77549 
    77550 > hide #!227 models
    77551 
    77552 > hide #!228 models
    77553 
    77554 > hide #!229 models
    77555 
    77556 > hide #!230 models
    77557 
    77558 > surface dust #231 size 21.4
    77559 
    77560 > save /Users/shoichi/Desktop/Fig.2b-09072025.png supersample 2
    77561 > transparentBackground true
    77562 
    77563 > show #!223 models
    77564 
    77565 > hide #!223 models
    77566 
    77567 > show #!224 models
    77568 
    77569 > hide #!224 models
    77570 
    77571 > show #!225 models
    77572 
    77573 > hide #!225 models
    77574 
    77575 > show #!226 models
    77576 
    77577 > show #!227 models
    77578 
    77579 > show #!228 models
    77580 
    77581 > hide #!228 models
    77582 
    77583 > show #!225 models
    77584 
    77585 > show #!224 models
    77586 
    77587 > hide #!231 models
    77588 
    77589 > show #!231 models
    77590 
    77591 > show #!228 models
    77592 
    77593 > show #!229 models
    77594 
    77595 > show #!230 models
    77596 
    77597 > show #!222 models
    77598 
    77599 > show #!223 models
    77600 
    77601 > show #!221 models
    77602 
    77603 > hide #!221 models
    77604 
    77605 > hide #!222 models
    77606 
    77607 > hide #!223 models
    77608 
    77609 > hide #!225 models
    77610 
    77611 > hide #!226 models
    77612 
    77613 > hide #!227 models
    77614 
    77615 > hide #!228 models
    77616 
    77617 > hide #!229 models
    77618 
    77619 > hide #!230 models
    77620 
    77621 > hide #!231 models
    77622 
    77623 > show #!231 models
    77624 
    77625 > show #!230 models
    77626 
    77627 > save /Users/shoichi/Desktop/Composition-before-JMB-color.cxs includeMaps
    77628 > true
    77629 
    77630 ——— End of log from Sat Sep 27 12:14:37 2025 ———
    77631 
    77632 opened ChimeraX session 
    77633 
    77634 > show #!214 models
    77635 
    77636 > show #!214-232 models
    77637 
    77638 > show #!209 models
    77639 
    77640 > hide #!209 models
    77641 
    77642 > show #!175-191 models
    77643 
    77644 > show #!141-157 models
    77645 
    77646 > show #!124-140 models
    77647 
    77648 > show #!107-140 models
    77649 
    77650 > show #!3 models
    77651 
    77652 > ui tool show "Side View"
    77653 
    77654 > color #141 #9d4594ff models
    77655 
    77656 > color #141 #adffc1ff models
    77657 
    77658 > color #141-157 #adffc1ff models
    77659 
    77660 > save /Users/shoichitachiyama/Desktop/Fig1A-top.png supersample 2
    77661 > transparentBackground true
    77662 
    77663 > turn x 90
    77664 
    77665 > turn x -90
    77666 
    77667 > show #!158 models
    77668 
    77669 > show #!158-174 models
    77670 
    77671 > show #!192-208 models
    77672 
    77673 > show #!209 models
    77674 
    77675 > show #!88 models
    77676 
    77677 > show #!89 models
    77678 
    77679 > show #!4 models
    77680 
    77681 > save /Users/shoichitachiyama/Desktop/Fig1A-Side.png supersample 2
    77682 > transparentBackground true
    77683 
    77684 > hide #!107 models
    77685 
    77686 > hide #!108 models
    77687 
    77688 > hide #!109 models
    77689 
    77690 > hide #!110 models
    77691 
    77692 > save /Users/shoichitachiyama/Desktop/Fig1-Updated_09282025.cxs includeMaps
    77693 > true
    77694 
    77695 > close session
    77696 
    77697 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    77698 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    77699 > review/Manuscript/09262025/New Images/Composition-Transparent-Fig2.cxs"
    77700 
    77701 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    77702 level 0.0137, step 1, values float32 
    77703 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    77704 step 1, values float32 
    77705 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    77706 level 0.0137, step 1, values float32 
    77707 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    77708 level 0.0137, step 1, values float32 
    77709 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    77710 level 0.027, step 1, values float32 
    77711 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    77712 step 1, values float32 
    77713 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    77714 level 0.0166, step 1, values float32 
    77715 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    77716 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77717 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    77718 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77719 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    77720 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77721 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    77722 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77723 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    77724 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77725 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    77726 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77727 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    77728 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77729 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    77730 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77731 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    77732 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77733 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    77734 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77735 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    77736 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77737 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    77738 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77739 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    77740 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77741 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    77742 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77743 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    77744 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77745 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    77746 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77747 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    77748 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77749 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    77750 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77751 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    77752 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77753 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    77754 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77755 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    77756 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77757 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    77758 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77759 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    77760 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77761 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    77762 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77763 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    77764 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77765 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    77766 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77767 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    77768 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77769 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    77770 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77771 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    77772 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77773 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    77774 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77775 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    77776 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77777 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    77778 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77779 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    77780 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77781 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    77782 pixel 2.14, shown at level 0.000793, step 1, values float32 
    77783 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    77784 shown at level 0.000785, step 1, values float32 
    77785 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    77786 shown at level 0.000785, step 1, values float32 
    77787 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    77788 shown at level 0.000785, step 1, values float32 
    77789 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    77790 shown at level 0.000785, step 1, values float32 
    77791 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    77792 shown at level 0.000785, step 1, values float32 
    77793 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    77794 shown at level 0.000785, step 1, values float32 
    77795 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    77796 shown at level 0.000785, step 1, values float32 
    77797 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    77798 shown at level 0.000785, step 1, values float32 
    77799 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    77800 shown at level 0.000785, step 1, values float32 
    77801 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    77802 shown at level 0.000785, step 1, values float32 
    77803 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    77804 shown at level 0.000785, step 1, values float32 
    77805 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    77806 shown at level 0.000785, step 1, values float32 
    77807 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    77808 shown at level 0.000785, step 1, values float32 
    77809 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    77810 shown at level 0.000785, step 1, values float32 
    77811 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    77812 shown at level 0.000785, step 1, values float32 
    77813 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    77814 shown at level 0.000785, step 1, values float32 
    77815 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    77816 shown at level 0.000785, step 1, values float32 
    77817 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    77818 shown at level 0.00107, step 1, values float32 
    77819 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    77820 shown at level 0.00107, step 1, values float32 
    77821 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    77822 shown at level 0.00107, step 1, values float32 
    77823 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    77824 shown at level 0.00107, step 1, values float32 
    77825 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    77826 shown at level 0.00107, step 1, values float32 
    77827 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    77828 shown at level 0.00107, step 1, values float32 
    77829 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    77830 shown at level 0.00107, step 1, values float32 
    77831 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    77832 shown at level 0.00107, step 1, values float32 
    77833 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    77834 shown at level 0.00107, step 1, values float32 
    77835 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    77836 shown at level 0.00107, step 1, values float32 
    77837 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    77838 shown at level 0.00107, step 1, values float32 
    77839 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    77840 shown at level 0.00107, step 1, values float32 
    77841 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    77842 shown at level 0.00107, step 1, values float32 
    77843 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    77844 shown at level 0.00107, step 1, values float32 
    77845 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    77846 shown at level 0.00107, step 1, values float32 
    77847 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    77848 shown at level 0.00107, step 1, values float32 
    77849 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    77850 shown at level 0.00107, step 1, values float32 
    77851 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    77852 shown at level 0.000848, step 1, values float32 
    77853 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    77854 shown at level 0.000848, step 1, values float32 
    77855 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    77856 shown at level 0.000848, step 1, values float32 
    77857 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    77858 shown at level 0.000848, step 1, values float32 
    77859 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    77860 shown at level 0.000848, step 1, values float32 
    77861 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    77862 shown at level 0.000848, step 1, values float32 
    77863 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    77864 shown at level 0.000848, step 1, values float32 
    77865 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    77866 shown at level 0.000848, step 1, values float32 
    77867 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    77868 shown at level 0.000848, step 1, values float32 
    77869 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    77870 shown at level 0.000848, step 1, values float32 
    77871 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    77872 shown at level 0.000848, step 1, values float32 
    77873 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    77874 shown at level 0.000848, step 1, values float32 
    77875 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    77876 shown at level 0.000848, step 1, values float32 
    77877 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    77878 shown at level 0.000848, step 1, values float32 
    77879 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    77880 shown at level 0.000848, step 1, values float32 
    77881 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    77882 shown at level 0.000848, step 1, values float32 
    77883 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    77884 shown at level 0.000848, step 1, values float32 
    77885 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    77886 2.14, shown at level 0.000997, step 1, values float32 
    77887 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    77888 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77889 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    77890 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77891 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    77892 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77893 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    77894 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77895 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    77896 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77897 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    77898 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77899 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    77900 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77901 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    77902 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77903 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    77904 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77905 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    77906 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77907 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    77908 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77909 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    77910 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77911 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    77912 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77913 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    77914 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77915 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    77916 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77917 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    77918 pixel 2.14, shown at level 0.000997, step 1, values float32 
    77919 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    77920 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77921 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    77922 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77923 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    77924 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77925 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    77926 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77927 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    77928 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77929 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    77930 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77931 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    77932 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77933 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    77934 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77935 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    77936 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77937 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    77938 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77939 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    77940 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77941 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    77942 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77943 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    77944 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77945 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    77946 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77947 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    77948 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77949 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    77950 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77951 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    77952 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    77953 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    77954 shown at level 0.0112, step 1, values float32 
    77955 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    77956 2.14, shown at level 0.00974, step 1, values float32 
    77957 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    77958 level 0.157, step 1, values float32 
    77959 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    77960 0.0283, step 1, values float32 
    77961 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    77962 level 0.00404, step 1, values float32 
    77963 Opened 3xFlgY.mrc as #22, grid size 256,256,256, pixel 2.14, shown at level
    77964 0.0112, step 1, values float32 
    77965 Opened 1xPflB.mrc as #26, grid size 200,200,200, pixel 2.14, shown at level
    77966 0.00045, step 1, values float32 
    77967 Opened 1xFlgY.mrc as #29, grid size 256,256,256, pixel 2.14, shown at level
    77968 0.0112, step 1, values float32 
    77969 Opened 1xPflB.mrc as #30, grid size 200,200,200, pixel 2.14, shown at level
    77970 0.00045, step 1, values float32 
    77971 opened ChimeraX session 
    77972 Showing 3xFlgY.seg - 23 regions, 23 surfaces 
    77973 
    77974 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    77975 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    77976 > review/Manuscript/09262025/New Images/Composition-Transparent-Fig2.cxs"
    77977 
    77978 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    77979 level 0.0137, step 1, values float32 
    77980 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    77981 step 1, values float32 
    77982 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    77983 level 0.0137, step 1, values float32 
    77984 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    77985 level 0.0137, step 1, values float32 
    77986 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    77987 level 0.027, step 1, values float32 
    77988 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    77989 step 1, values float32 
    77990 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    77991 level 0.0166, step 1, values float32 
    77992 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    77993 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77994 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    77995 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77996 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    77997 pixel 2.14, shown at level 0.000576, step 1, values float32 
    77998 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    77999 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78000 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    78001 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78002 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    78003 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78004 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    78005 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78006 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    78007 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78008 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    78009 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78010 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    78011 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78012 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    78013 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78014 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    78015 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78016 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    78017 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78018 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    78019 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78020 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    78021 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78022 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    78023 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78024 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    78025 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78026 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    78027 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78028 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    78029 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78030 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    78031 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78032 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    78033 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78034 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    78035 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78036 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    78037 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78038 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    78039 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78040 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    78041 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78042 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    78043 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78044 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    78045 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78046 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    78047 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78048 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    78049 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78050 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    78051 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78052 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    78053 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78054 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    78055 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78056 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    78057 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78058 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    78059 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78060 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    78061 shown at level 0.000785, step 1, values float32 
    78062 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    78063 shown at level 0.000785, step 1, values float32 
    78064 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    78065 shown at level 0.000785, step 1, values float32 
    78066 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    78067 shown at level 0.000785, step 1, values float32 
    78068 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    78069 shown at level 0.000785, step 1, values float32 
    78070 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    78071 shown at level 0.000785, step 1, values float32 
    78072 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    78073 shown at level 0.000785, step 1, values float32 
    78074 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    78075 shown at level 0.000785, step 1, values float32 
    78076 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    78077 shown at level 0.000785, step 1, values float32 
    78078 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    78079 shown at level 0.000785, step 1, values float32 
    78080 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    78081 shown at level 0.000785, step 1, values float32 
    78082 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    78083 shown at level 0.000785, step 1, values float32 
    78084 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    78085 shown at level 0.000785, step 1, values float32 
    78086 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    78087 shown at level 0.000785, step 1, values float32 
    78088 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    78089 shown at level 0.000785, step 1, values float32 
    78090 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    78091 shown at level 0.000785, step 1, values float32 
    78092 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    78093 shown at level 0.000785, step 1, values float32 
    78094 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    78095 shown at level 0.00107, step 1, values float32 
    78096 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    78097 shown at level 0.00107, step 1, values float32 
    78098 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    78099 shown at level 0.00107, step 1, values float32 
    78100 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    78101 shown at level 0.00107, step 1, values float32 
    78102 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    78103 shown at level 0.00107, step 1, values float32 
    78104 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    78105 shown at level 0.00107, step 1, values float32 
    78106 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    78107 shown at level 0.00107, step 1, values float32 
    78108 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    78109 shown at level 0.00107, step 1, values float32 
    78110 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    78111 shown at level 0.00107, step 1, values float32 
    78112 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    78113 shown at level 0.00107, step 1, values float32 
    78114 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    78115 shown at level 0.00107, step 1, values float32 
    78116 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    78117 shown at level 0.00107, step 1, values float32 
    78118 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    78119 shown at level 0.00107, step 1, values float32 
    78120 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    78121 shown at level 0.00107, step 1, values float32 
    78122 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    78123 shown at level 0.00107, step 1, values float32 
    78124 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    78125 shown at level 0.00107, step 1, values float32 
    78126 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    78127 shown at level 0.00107, step 1, values float32 
    78128 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    78129 shown at level 0.000848, step 1, values float32 
    78130 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    78131 shown at level 0.000848, step 1, values float32 
    78132 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    78133 shown at level 0.000848, step 1, values float32 
    78134 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    78135 shown at level 0.000848, step 1, values float32 
    78136 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    78137 shown at level 0.000848, step 1, values float32 
    78138 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    78139 shown at level 0.000848, step 1, values float32 
    78140 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    78141 shown at level 0.000848, step 1, values float32 
    78142 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    78143 shown at level 0.000848, step 1, values float32 
    78144 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    78145 shown at level 0.000848, step 1, values float32 
    78146 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    78147 shown at level 0.000848, step 1, values float32 
    78148 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    78149 shown at level 0.000848, step 1, values float32 
    78150 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    78151 shown at level 0.000848, step 1, values float32 
    78152 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    78153 shown at level 0.000848, step 1, values float32 
    78154 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    78155 shown at level 0.000848, step 1, values float32 
    78156 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    78157 shown at level 0.000848, step 1, values float32 
    78158 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    78159 shown at level 0.000848, step 1, values float32 
    78160 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    78161 shown at level 0.000848, step 1, values float32 
    78162 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    78163 2.14, shown at level 0.000997, step 1, values float32 
    78164 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    78165 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78166 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    78167 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78168 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    78169 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78170 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    78171 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78172 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    78173 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78174 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    78175 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78176 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    78177 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78178 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    78179 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78180 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    78181 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78182 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    78183 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78184 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    78185 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78186 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    78187 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78188 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    78189 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78190 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    78191 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78192 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    78193 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78194 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    78195 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78196 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    78197 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78198 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    78199 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78200 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    78201 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78202 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    78203 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78204 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    78205 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78206 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    78207 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78208 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    78209 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78210 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    78211 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78212 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    78213 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78214 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    78215 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78216 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    78217 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78218 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    78219 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78220 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    78221 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78222 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    78223 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78224 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    78225 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78226 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    78227 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78228 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    78229 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78230 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    78231 shown at level 0.0112, step 1, values float32 
    78232 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    78233 2.14, shown at level 0.00974, step 1, values float32 
    78234 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    78235 level 0.157, step 1, values float32 
    78236 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    78237 0.0283, step 1, values float32 
    78238 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    78239 level 0.00404, step 1, values float32 
    78240 Opened 3xFlgY.mrc as #22, grid size 256,256,256, pixel 2.14, shown at level
    78241 0.0112, step 1, values float32 
    78242 Opened 1xPflB.mrc as #26, grid size 200,200,200, pixel 2.14, shown at level
    78243 0.00045, step 1, values float32 
    78244 Opened 1xFlgY.mrc as #29, grid size 256,256,256, pixel 2.14, shown at level
    78245 0.0112, step 1, values float32 
    78246 Opened 1xPflB.mrc as #30, grid size 200,200,200, pixel 2.14, shown at level
    78247 0.00045, step 1, values float32 
    78248 opened ChimeraX session 
    78249 Showing 3xFlgY.seg - 23 regions, 23 surfaces 
    78250 
    78251 > hide #!21 models
    78252 
    78253 > hide #!25 models
    78254 
    78255 > show #!25 models
    78256 
    78257 > select add #25
    78258 
    78259 78642 atoms, 79390 bonds, 9775 residues, 18 models selected 
    78260 
    78261 > show #!14 models
    78262 
    78263 > hide #!14 models
    78264 
    78265 > show #!15 models
    78266 
    78267 > hide #!15 models
    78268 
    78269 Alignment identifier is 1 
    78270 Alignment identifier is 2 
    78271 
    78272 > select #25.1/BX-BY:155 #25.2/BX-BY:155 #25.3/BX-BY:155 #25.4/BX-BY:155
    78273 > #25.5/BX-BY:155 #25.6/BX-BY:155 #25.7/BX-BY:155 #25.8/BX-BY:155 #25.9/BX-
    78274 > BY:155 #25.10/BX-BY:155 #25.11/BX-BY:155 #25.12/BX-BY:155 #25.13/BX-BY:155
    78275 > #25.14/BX-BY:155 #25.15/BX-BY:155 #25.16/BX-BY:155 #25.17/BX-BY:155
    78276 
    78277 306 atoms, 272 bonds, 34 residues, 17 models selected 
    78278 
    78279 > select #25.1/BX-BY #25.2/BX-BY #25.3/BX-BY #25.4/BX-BY #25.5/BX-BY #25.6/BX-
    78280 > BY #25.7/BX-BY #25.8/BX-BY #25.9/BX-BY #25.10/BX-BY #25.11/BX-BY #25.12/BX-
    78281 > BY #25.13/BX-BY #25.14/BX-BY #25.15/BX-BY #25.16/BX-BY #25.17/BX-BY
    78282 
    78283 41990 atoms, 42194 bonds, 5270 residues, 17 models selected 
    78284 1 [ID: 1] region 34 chains [1-155] RMSD: 191.985 
    78285  
    78286 
    78287 > select #25.1/s:788 #25.2/s:788 #25.3/s:788 #25.4/s:788 #25.5/s:788
    78288 > #25.6/s:788 #25.7/s:788 #25.8/s:788 #25.9/s:788 #25.10/s:788 #25.11/s:788
    78289 > #25.12/s:788 #25.13/s:788 #25.14/s:788 #25.15/s:788 #25.16/s:788
    78290 > #25.17/s:788
    78291 
    78292 170 atoms, 153 bonds, 17 residues, 17 models selected 
    78293 
    78294 > select #25.1/s #25.2/s #25.3/s #25.4/s #25.5/s #25.6/s #25.7/s #25.8/s
    78295 > #25.9/s #25.10/s #25.11/s #25.12/s #25.13/s #25.14/s #25.15/s #25.16/s
    78296 > #25.17/s
    78297 
    78298 36652 atoms, 37196 bonds, 4505 residues, 17 models selected 
    78299 2 [ID: 2] region 17 chains [1-265] RMSD: 281.686 
    78300  
    78301 
    78302 > hide sel cartoons
    78303 
    78304 > show #!14 models
    78305 
    78306 > hide #!14 models
    78307 
    78308 > show #!13 models
    78309 
    78310 > hide #!13 models
    78311 
    78312 > show #!15 models
    78313 
    78314 > select add #15
    78315 
    78316 271864 atoms, 276080 bonds, 17 pseudobonds, 33626 residues, 69 models selected 
    78317 
    78318 > select add #25
    78319 
    78320 313854 atoms, 318274 bonds, 17 pseudobonds, 38896 residues, 155 models
    78321 selected 
    78322 
    78323 > select subtract #25
    78324 
    78325 235212 atoms, 238884 bonds, 17 pseudobonds, 29121 residues, 171 models
    78326 selected 
    78327 
    78328 > hide #!25 models
    78329 
    78330 Drag select of 231 C17-FlgY_New.mrc gaussian 
    78331 
    78332 > hide #!231 models
    78333 
    78334 > select subtract #231
    78335 
    78336 Nothing selected 
    78337 
    78338 > select add #15
    78339 
    78340 235212 atoms, 238884 bonds, 17 pseudobonds, 29121 residues, 35 models selected 
    78341 
    78342 > hide sel surfaces
    78343 
    78344 > show sel cartoons
    78345 
    78346 Alignment identifier is 1 
    78347 Alignment identifier is 2 
    78348 Alignment identifier is 3 
    78349 Alignment identifier is 4 
    78350 
    78351 > select #15.1/l:163 #15.2/l:163 #15.3/l:163 #15.4/l:163 #15.5/l:163
    78352 > #15.6/l:163 #15.7/l:163 #15.8/l:163 #15.9/l:163 #15.10/l:163 #15.11/l:163
    78353 > #15.12/l:163 #15.13/l:163 #15.14/l:163 #15.15/l:163 #15.16/l:163
    78354 > #15.17/l:163
    78355 
    78356 119 atoms, 102 bonds, 17 residues, 17 models selected 
    78357 
    78358 > select #15.1/l #15.2/l #15.3/l #15.4/l #15.5/l #15.6/l #15.7/l #15.8/l
    78359 > #15.9/l #15.10/l #15.11/l #15.12/l #15.13/l #15.14/l #15.15/l #15.16/l
    78360 > #15.17/l
    78361 
    78362 20264 atoms, 20706 bonds, 2533 residues, 17 models selected 
    78363 2 [ID: 2] region 17 chains [1-149] RMSD: 503.595 
    78364  
    78365 
    78366 > select #15.1/BX-BY:155 #15.2/BX-BY:155 #15.3/BX-BY:155 #15.4/BX-BY:155
    78367 > #15.5/BX-BY:155 #15.6/BX-BY:155 #15.7/BX-BY:155 #15.8/BX-BY:155 #15.9/BX-
    78368 > BY:155 #15.10/BX-BY:155 #15.11/BX-BY:155 #15.12/BX-BY:155 #15.13/BX-BY:155
    78369 > #15.14/BX-BY:155 #15.15/BX-BY:155 #15.16/BX-BY:155 #15.17/BX-BY:155
    78370 
    78371 306 atoms, 272 bonds, 34 residues, 17 models selected 
    78372 
    78373 > select #15.1/BX-BY #15.2/BX-BY #15.3/BX-BY #15.4/BX-BY #15.5/BX-BY #15.6/BX-
    78374 > BY #15.7/BX-BY #15.8/BX-BY #15.9/BX-BY #15.10/BX-BY #15.11/BX-BY #15.12/BX-
    78375 > BY #15.13/BX-BY #15.14/BX-BY #15.15/BX-BY #15.16/BX-BY #15.17/BX-BY
    78376 
    78377 41990 atoms, 42194 bonds, 5270 residues, 17 models selected 
    78378 1 [ID: 1] region 34 chains [1-155] RMSD: 191.261 
    78379  
    78380 
    78381 > hide sel cartoons
    78382 
    78383 > select clear
    78384 
    78385 > show #!25 models
    78386 
    78387 > show #!231 models
    78388 
    78389 > hide #!231 models
    78390 
    78391 Drag select of 29121 residues, 17 pseudobonds 
    78392 
    78393 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/FlgY-
    78394 > PflABrings_09282025.pdb selectedOnly true
    78395 
    78396 > close session
    78397 
    78398 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    78399 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    78400 > review/Manuscript/09262025/Comtenue--9252026/Contenue-
    78401 > ver2-Fig3_from_09252025.cxs"
    78402 
    78403 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    78404 level 0.0137, step 1, values float32 
    78405 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    78406 step 1, values float32 
    78407 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    78408 level 0.0137, step 1, values float32 
    78409 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    78410 level 0.0137, step 1, values float32 
    78411 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    78412 level 0.027, step 1, values float32 
    78413 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    78414 step 1, values float32 
    78415 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    78416 level 0.0166, step 1, values float32 
    78417 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    78418 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78419 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    78420 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78421 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    78422 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78423 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    78424 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78425 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    78426 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78427 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    78428 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78429 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    78430 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78431 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    78432 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78433 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    78434 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78435 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    78436 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78437 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    78438 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78439 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    78440 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78441 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    78442 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78443 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    78444 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78445 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    78446 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78447 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    78448 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78449 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    78450 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78451 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    78452 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78453 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    78454 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78455 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    78456 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78457 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    78458 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78459 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    78460 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78461 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    78462 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78463 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    78464 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78465 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    78466 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78467 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    78468 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78469 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    78470 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78471 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    78472 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78473 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    78474 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78475 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    78476 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78477 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    78478 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78479 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    78480 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78481 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    78482 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78483 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    78484 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78485 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    78486 shown at level 0.000785, step 1, values float32 
    78487 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    78488 shown at level 0.000785, step 1, values float32 
    78489 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    78490 shown at level 0.000785, step 1, values float32 
    78491 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    78492 shown at level 0.000785, step 1, values float32 
    78493 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    78494 shown at level 0.000785, step 1, values float32 
    78495 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    78496 shown at level 0.000785, step 1, values float32 
    78497 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    78498 shown at level 0.000785, step 1, values float32 
    78499 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    78500 shown at level 0.000785, step 1, values float32 
    78501 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    78502 shown at level 0.000785, step 1, values float32 
    78503 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    78504 shown at level 0.000785, step 1, values float32 
    78505 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    78506 shown at level 0.000785, step 1, values float32 
    78507 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    78508 shown at level 0.000785, step 1, values float32 
    78509 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    78510 shown at level 0.000785, step 1, values float32 
    78511 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    78512 shown at level 0.000785, step 1, values float32 
    78513 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    78514 shown at level 0.000785, step 1, values float32 
    78515 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    78516 shown at level 0.000785, step 1, values float32 
    78517 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    78518 shown at level 0.000785, step 1, values float32 
    78519 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    78520 shown at level 0.00107, step 1, values float32 
    78521 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    78522 shown at level 0.00107, step 1, values float32 
    78523 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    78524 shown at level 0.00107, step 1, values float32 
    78525 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    78526 shown at level 0.00107, step 1, values float32 
    78527 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    78528 shown at level 0.00107, step 1, values float32 
    78529 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    78530 shown at level 0.00107, step 1, values float32 
    78531 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    78532 shown at level 0.00107, step 1, values float32 
    78533 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    78534 shown at level 0.00107, step 1, values float32 
    78535 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    78536 shown at level 0.00107, step 1, values float32 
    78537 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    78538 shown at level 0.00107, step 1, values float32 
    78539 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    78540 shown at level 0.00107, step 1, values float32 
    78541 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    78542 shown at level 0.00107, step 1, values float32 
    78543 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    78544 shown at level 0.00107, step 1, values float32 
    78545 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    78546 shown at level 0.00107, step 1, values float32 
    78547 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    78548 shown at level 0.00107, step 1, values float32 
    78549 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    78550 shown at level 0.00107, step 1, values float32 
    78551 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    78552 shown at level 0.00107, step 1, values float32 
    78553 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    78554 shown at level 0.000848, step 1, values float32 
    78555 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    78556 shown at level 0.000848, step 1, values float32 
    78557 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    78558 shown at level 0.000848, step 1, values float32 
    78559 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    78560 shown at level 0.000848, step 1, values float32 
    78561 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    78562 shown at level 0.000848, step 1, values float32 
    78563 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    78564 shown at level 0.000848, step 1, values float32 
    78565 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    78566 shown at level 0.000848, step 1, values float32 
    78567 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    78568 shown at level 0.000848, step 1, values float32 
    78569 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    78570 shown at level 0.000848, step 1, values float32 
    78571 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    78572 shown at level 0.000848, step 1, values float32 
    78573 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    78574 shown at level 0.000848, step 1, values float32 
    78575 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    78576 shown at level 0.000848, step 1, values float32 
    78577 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    78578 shown at level 0.000848, step 1, values float32 
    78579 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    78580 shown at level 0.000848, step 1, values float32 
    78581 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    78582 shown at level 0.000848, step 1, values float32 
    78583 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    78584 shown at level 0.000848, step 1, values float32 
    78585 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    78586 shown at level 0.000848, step 1, values float32 
    78587 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    78588 2.14, shown at level 0.000997, step 1, values float32 
    78589 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    78590 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78591 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    78592 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78593 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    78594 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78595 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    78596 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78597 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    78598 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78599 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    78600 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78601 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    78602 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78603 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    78604 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78605 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    78606 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78607 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    78608 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78609 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    78610 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78611 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    78612 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78613 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    78614 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78615 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    78616 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78617 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    78618 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78619 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    78620 pixel 2.14, shown at level 0.000997, step 1, values float32 
    78621 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    78622 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78623 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    78624 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78625 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    78626 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78627 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    78628 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78629 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    78630 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78631 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    78632 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78633 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    78634 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78635 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    78636 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78637 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    78638 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78639 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    78640 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78641 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    78642 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78643 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    78644 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78645 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    78646 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78647 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    78648 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78649 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    78650 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78651 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    78652 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78653 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    78654 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    78655 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    78656 shown at level 0.0112, step 1, values float32 
    78657 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    78658 2.14, shown at level 0.00974, step 1, values float32 
    78659 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    78660 level 0.157, step 1, values float32 
    78661 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    78662 0.0283, step 1, values float32 
    78663 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    78664 level 0.00404, step 1, values float32 
    78665 Opened PflAB_wout_FlgYoverlap_imasked as #18, grid size 200,200,200, pixel
    78666 2.14, shown at level 0.00045, step 1, values float32 
    78667 Opened PflC-only-Model-area.mrc as #19, grid size 200,200,200, pixel 2.14,
    78668 shown at level 0.00107, step 1, values float32 
    78669 Opened PflC-only-Model-area.mrc copy as #20, grid size 200,200,200, pixel
    78670 2.14, shown at level 0.00107, step 1, values float32 
    78671 Opened PflC-only-Model-area.mrc copy as #21, grid size 200,200,200, pixel
    78672 2.14, shown at level 0.00107, step 1, values float32 
    78673 Opened PflC-only-Model-area.mrc copy as #22, grid size 200,200,200, pixel
    78674 2.14, shown at level 0.00107, step 1, values float32 
    78675 Opened PflC-only-Model-area.mrc copy as #23, grid size 200,200,200, pixel
    78676 2.14, shown at level 0.00107, step 1, values float32 
    78677 Opened PflC-only-Model-area.mrc copy as #24, grid size 200,200,200, pixel
    78678 2.14, shown at level 0.00107, step 1, values float32 
    78679 Opened PflC-only-Model-area.mrc copy as #25, grid size 200,200,200, pixel
    78680 2.14, shown at level 0.00107, step 1, values float32 
    78681 Opened PflC-only-Model-area.mrc copy as #26, grid size 200,200,200, pixel
    78682 2.14, shown at level 0.00107, step 1, values float32 
    78683 Opened PflC-only-Model-area.mrc copy as #27, grid size 200,200,200, pixel
    78684 2.14, shown at level 0.00107, step 1, values float32 
    78685 Opened PflC-only-Model-area.mrc copy as #28, grid size 200,200,200, pixel
    78686 2.14, shown at level 0.00107, step 1, values float32 
    78687 Opened PflC-only-Model-area.mrc copy as #29, grid size 200,200,200, pixel
    78688 2.14, shown at level 0.00107, step 1, values float32 
    78689 Opened PflC-only-Model-area.mrc copy as #30, grid size 200,200,200, pixel
    78690 2.14, shown at level 0.00107, step 1, values float32 
    78691 Opened PflC-only-Model-area.mrc copy as #31, grid size 200,200,200, pixel
    78692 2.14, shown at level 0.00107, step 1, values float32 
    78693 Opened PflC-only-Model-area.mrc copy as #32, grid size 200,200,200, pixel
    78694 2.14, shown at level 0.00107, step 1, values float32 
    78695 Opened PflC-only-Model-area.mrc copy as #33, grid size 200,200,200, pixel
    78696 2.14, shown at level 0.00107, step 1, values float32 
    78697 Opened PflC-only-Model-area.mrc copy as #34, grid size 200,200,200, pixel
    78698 2.14, shown at level 0.00107, step 1, values float32 
    78699 Opened PflC-only-Model-area.mrc copy as #35, grid size 200,200,200, pixel
    78700 2.14, shown at level 0.00107, step 1, values float32 
    78701 Opened PflC-only-Model-area.mrc copy as #36, grid size 200,200,200, pixel
    78702 2.14, shown at level 0.00107, step 1, values float32 
    78703 Opened Long-cage.mrc as #37, grid size 200,200,200, pixel 2.14, shown at level
    78704 0.00404, step 1, values float32 
    78705 Opened Short-cage.mrc as #38, grid size 200,200,200, pixel 2.14, shown at
    78706 level 0.00404, step 1, values float32 
    78707 Opened Other-PflC.mrc as #39, grid size 200,200,200, pixel 2.14, shown at
    78708 level 0.00404, step 1, values float32 
    78709 Opened Long-cage_imasked as #45, grid size 200,200,200, pixel 2.14, shown at
    78710 level 0.00404, step 1, values float32 
    78711 Opened Short-cage_imasked as #46, grid size 200,200,200, pixel 2.14, shown at
    78712 level 0.00404, step 1, values float32 
    78713 Opened Short-cage.mrc copy as #65, grid size 200,200,200, pixel 2.14, shown at
    78714 level 0.00404, step 1, values float32 
    78715 Opened Short-cage.mrc copy as #66, grid size 200,200,200, pixel 2.14, shown at
    78716 level 0.00404, step 1, values float32 
    78717 Opened Short-cage.mrc copy as #67, grid size 200,200,200, pixel 2.14, shown at
    78718 level 0.00404, step 1, values float32 
    78719 Opened Short-cage.mrc copy as #68, grid size 200,200,200, pixel 2.14, shown at
    78720 level 0.00404, step 1, values float32 
    78721 Opened Short-cage.mrc copy as #69, grid size 200,200,200, pixel 2.14, shown at
    78722 level 0.00404, step 1, values float32 
    78723 Opened Short-cage.mrc copy as #70, grid size 200,200,200, pixel 2.14, shown at
    78724 level 0.00404, step 1, values float32 
    78725 Opened Short-cage.mrc copy as #71, grid size 200,200,200, pixel 2.14, shown at
    78726 level 0.00404, step 1, values float32 
    78727 Opened Short-cage.mrc copy as #72, grid size 200,200,200, pixel 2.14, shown at
    78728 level 0.00404, step 1, values float32 
    78729 Opened Short-cage.mrc copy as #73, grid size 200,200,200, pixel 2.14, shown at
    78730 level 0.00404, step 1, values float32 
    78731 Opened Short-cage.mrc copy as #74, grid size 200,200,200, pixel 2.14, shown at
    78732 level 0.00404, step 1, values float32 
    78733 Opened Short-cage.mrc copy as #75, grid size 200,200,200, pixel 2.14, shown at
    78734 level 0.00404, step 1, values float32 
    78735 Opened Short-cage.mrc copy as #76, grid size 200,200,200, pixel 2.14, shown at
    78736 level 0.00404, step 1, values float32 
    78737 Opened Short-cage.mrc copy as #77, grid size 200,200,200, pixel 2.14, shown at
    78738 level 0.00404, step 1, values float32 
    78739 Opened Short-cage.mrc copy as #78, grid size 200,200,200, pixel 2.14, shown at
    78740 level 0.00404, step 1, values float32 
    78741 Opened Short-cage.mrc copy as #79, grid size 200,200,200, pixel 2.14, shown at
    78742 level 0.00404, step 1, values float32 
    78743 Opened Short-cage.mrc copy as #80, grid size 200,200,200, pixel 2.14, shown at
    78744 level 0.00404, step 1, values float32 
    78745 Opened Short-cage.mrc copy as #81, grid size 200,200,200, pixel 2.14, shown at
    78746 level 0.00404, step 1, values float32 
    78747 Opened Long-cage.mrc copy as #84, grid size 200,200,200, pixel 2.14, shown at
    78748 level 0.00404, step 1, values float32 
    78749 Opened Long-cage.mrc as #86, grid size 200,200,200, pixel 2.14, shown at level
    78750 0.00261, step 1, values float32 
    78751 Opened PflC-region-long-cage.mrc as #90, grid size 200,200,200, pixel 2.14,
    78752 shown at level 0.00261, step 1, values float32 
    78753 Opened PflD-Longcage-region.mrc as #91, grid size 200,200,200, pixel 2.14,
    78754 shown at level 0.00261, step 1, values float32 
    78755 Opened PflC-region-long-cage.mrc copy as #49, grid size 200,200,200, pixel
    78756 2.14, shown at level 0.00261, step 1, values float32 
    78757 Opened PflC-region-long-cage.mrc copy as #50, grid size 200,200,200, pixel
    78758 2.14, shown at level 0.00261, step 1, values float32 
    78759 Opened PflC-region-long-cage.mrc copy as #51, grid size 200,200,200, pixel
    78760 2.14, shown at level 0.00261, step 1, values float32 
    78761 Opened PflC-region-long-cage.mrc copy as #52, grid size 200,200,200, pixel
    78762 2.14, shown at level 0.00261, step 1, values float32 
    78763 Opened PflC-region-long-cage.mrc copy as #53, grid size 200,200,200, pixel
    78764 2.14, shown at level 0.00261, step 1, values float32 
    78765 Opened PflC-region-long-cage.mrc copy as #54, grid size 200,200,200, pixel
    78766 2.14, shown at level 0.00261, step 1, values float32 
    78767 Opened PflC-region-long-cage.mrc copy as #55, grid size 200,200,200, pixel
    78768 2.14, shown at level 0.00261, step 1, values float32 
    78769 Opened PflC-region-long-cage.mrc copy as #56, grid size 200,200,200, pixel
    78770 2.14, shown at level 0.00261, step 1, values float32 
    78771 Opened PflC-region-long-cage.mrc copy as #57, grid size 200,200,200, pixel
    78772 2.14, shown at level 0.00261, step 1, values float32 
    78773 Opened PflC-region-long-cage.mrc copy as #58, grid size 200,200,200, pixel
    78774 2.14, shown at level 0.00261, step 1, values float32 
    78775 Opened PflC-region-long-cage.mrc copy as #59, grid size 200,200,200, pixel
    78776 2.14, shown at level 0.00261, step 1, values float32 
    78777 Opened PflC-region-long-cage.mrc copy as #60, grid size 200,200,200, pixel
    78778 2.14, shown at level 0.00261, step 1, values float32 
    78779 Opened PflC-region-long-cage.mrc copy as #61, grid size 200,200,200, pixel
    78780 2.14, shown at level 0.00261, step 1, values float32 
    78781 Opened PflC-region-long-cage.mrc copy as #62, grid size 200,200,200, pixel
    78782 2.14, shown at level 0.00261, step 1, values float32 
    78783 Opened PflC-region-long-cage.mrc copy as #63, grid size 200,200,200, pixel
    78784 2.14, shown at level 0.00261, step 1, values float32 
    78785 Opened PflC-region-long-cage.mrc copy as #64, grid size 200,200,200, pixel
    78786 2.14, shown at level 0.00261, step 1, values float32 
    78787 Opened PflD-Longcage-region.mrc copy as #93, grid size 200,200,200, pixel
    78788 2.14, shown at level 0.00261, step 1, values float32 
    78789 Opened PflD-Longcage-region.mrc copy as #94, grid size 200,200,200, pixel
    78790 2.14, shown at level 0.00261, step 1, values float32 
    78791 Opened PflD-Longcage-region.mrc copy as #95, grid size 200,200,200, pixel
    78792 2.14, shown at level 0.00261, step 1, values float32 
    78793 Opened PflD-Longcage-region.mrc copy as #96, grid size 200,200,200, pixel
    78794 2.14, shown at level 0.00261, step 1, values float32 
    78795 Opened PflD-Longcage-region.mrc copy as #97, grid size 200,200,200, pixel
    78796 2.14, shown at level 0.00261, step 1, values float32 
    78797 Opened PflD-Longcage-region.mrc copy as #98, grid size 200,200,200, pixel
    78798 2.14, shown at level 0.00261, step 1, values float32 
    78799 Opened PflD-Longcage-region.mrc copy as #99, grid size 200,200,200, pixel
    78800 2.14, shown at level 0.00261, step 1, values float32 
    78801 Opened PflD-Longcage-region.mrc copy as #100, grid size 200,200,200, pixel
    78802 2.14, shown at level 0.00261, step 1, values float32 
    78803 Opened PflD-Longcage-region.mrc copy as #101, grid size 200,200,200, pixel
    78804 2.14, shown at level 0.00261, step 1, values float32 
    78805 Opened PflD-Longcage-region.mrc copy as #102, grid size 200,200,200, pixel
    78806 2.14, shown at level 0.00261, step 1, values float32 
    78807 Opened PflD-Longcage-region.mrc copy as #103, grid size 200,200,200, pixel
    78808 2.14, shown at level 0.00261, step 1, values float32 
    78809 Opened PflD-Longcage-region.mrc copy as #104, grid size 200,200,200, pixel
    78810 2.14, shown at level 0.00261, step 1, values float32 
    78811 Opened PflD-Longcage-region.mrc copy as #105, grid size 200,200,200, pixel
    78812 2.14, shown at level 0.00261, step 1, values float32 
    78813 Opened PflD-Longcage-region.mrc copy as #106, grid size 200,200,200, pixel
    78814 2.14, shown at level 0.00261, step 1, values float32 
    78815 Opened PflD-Longcage-region.mrc copy as #210, grid size 200,200,200, pixel
    78816 2.14, shown at level 0.00261, step 1, values float32 
    78817 Opened PflD-Longcage-region.mrc copy as #211, grid size 200,200,200, pixel
    78818 2.14, shown at level 0.00261, step 1, values float32 
    78819 Opened PflD-Longcage-region.mrc copy as #212, grid size 200,200,200, pixel
    78820 2.14, shown at level 0.00261, step 1, values float32 
    78821 Opened PflD-Longcage-region.mrc copy as #213, grid size 200,200,200, pixel
    78822 2.14, shown at level 0.00261, step 1, values float32 
    78823 opened ChimeraX session 
    78824 Showing Long-cage.seg - 559 regions, 559 surfaces 
    78825 
    78826 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    78827 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    78828 > review/Manuscript/09262025/Comtenue--9252026/Contenue-
    78829 > ver2-Fig3_from_09252025.cxs"
    78830 
    78831 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    78832 level 0.0137, step 1, values float32 
    78833 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    78834 step 1, values float32 
    78835 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    78836 level 0.0137, step 1, values float32 
    78837 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    78838 level 0.0137, step 1, values float32 
    78839 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    78840 level 0.027, step 1, values float32 
    78841 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    78842 step 1, values float32 
    78843 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    78844 level 0.0166, step 1, values float32 
    78845 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    78846 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78847 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    78848 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78849 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    78850 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78851 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    78852 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78853 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    78854 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78855 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    78856 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78857 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    78858 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78859 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    78860 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78861 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    78862 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78863 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    78864 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78865 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    78866 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78867 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    78868 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78869 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    78870 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78871 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    78872 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78873 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    78874 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78875 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    78876 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78877 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    78878 pixel 2.14, shown at level 0.000576, step 1, values float32 
    78879 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    78880 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78881 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    78882 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78883 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    78884 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78885 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    78886 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78887 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    78888 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78889 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    78890 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78891 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    78892 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78893 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    78894 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78895 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    78896 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78897 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    78898 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78899 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    78900 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78901 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    78902 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78903 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    78904 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78905 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    78906 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78907 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    78908 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78909 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    78910 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78911 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    78912 pixel 2.14, shown at level 0.000793, step 1, values float32 
    78913 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    78914 shown at level 0.000785, step 1, values float32 
    78915 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    78916 shown at level 0.000785, step 1, values float32 
    78917 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    78918 shown at level 0.000785, step 1, values float32 
    78919 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    78920 shown at level 0.000785, step 1, values float32 
    78921 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    78922 shown at level 0.000785, step 1, values float32 
    78923 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    78924 shown at level 0.000785, step 1, values float32 
    78925 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    78926 shown at level 0.000785, step 1, values float32 
    78927 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    78928 shown at level 0.000785, step 1, values float32 
    78929 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    78930 shown at level 0.000785, step 1, values float32 
    78931 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    78932 shown at level 0.000785, step 1, values float32 
    78933 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    78934 shown at level 0.000785, step 1, values float32 
    78935 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    78936 shown at level 0.000785, step 1, values float32 
    78937 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    78938 shown at level 0.000785, step 1, values float32 
    78939 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    78940 shown at level 0.000785, step 1, values float32 
    78941 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    78942 shown at level 0.000785, step 1, values float32 
    78943 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    78944 shown at level 0.000785, step 1, values float32 
    78945 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    78946 shown at level 0.000785, step 1, values float32 
    78947 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    78948 shown at level 0.00107, step 1, values float32 
    78949 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    78950 shown at level 0.00107, step 1, values float32 
    78951 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    78952 shown at level 0.00107, step 1, values float32 
    78953 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    78954 shown at level 0.00107, step 1, values float32 
    78955 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    78956 shown at level 0.00107, step 1, values float32 
    78957 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    78958 shown at level 0.00107, step 1, values float32 
    78959 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    78960 shown at level 0.00107, step 1, values float32 
    78961 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    78962 shown at level 0.00107, step 1, values float32 
    78963 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    78964 shown at level 0.00107, step 1, values float32 
    78965 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    78966 shown at level 0.00107, step 1, values float32 
    78967 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    78968 shown at level 0.00107, step 1, values float32 
    78969 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    78970 shown at level 0.00107, step 1, values float32 
    78971 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    78972 shown at level 0.00107, step 1, values float32 
    78973 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    78974 shown at level 0.00107, step 1, values float32 
    78975 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    78976 shown at level 0.00107, step 1, values float32 
    78977 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    78978 shown at level 0.00107, step 1, values float32 
    78979 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    78980 shown at level 0.00107, step 1, values float32 
    78981 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    78982 shown at level 0.000848, step 1, values float32 
    78983 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    78984 shown at level 0.000848, step 1, values float32 
    78985 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    78986 shown at level 0.000848, step 1, values float32 
    78987 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    78988 shown at level 0.000848, step 1, values float32 
    78989 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    78990 shown at level 0.000848, step 1, values float32 
    78991 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    78992 shown at level 0.000848, step 1, values float32 
    78993 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    78994 shown at level 0.000848, step 1, values float32 
    78995 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    78996 shown at level 0.000848, step 1, values float32 
    78997 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    78998 shown at level 0.000848, step 1, values float32 
    78999 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    79000 shown at level 0.000848, step 1, values float32 
    79001 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    79002 shown at level 0.000848, step 1, values float32 
    79003 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    79004 shown at level 0.000848, step 1, values float32 
    79005 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    79006 shown at level 0.000848, step 1, values float32 
    79007 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    79008 shown at level 0.000848, step 1, values float32 
    79009 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    79010 shown at level 0.000848, step 1, values float32 
    79011 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    79012 shown at level 0.000848, step 1, values float32 
    79013 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    79014 shown at level 0.000848, step 1, values float32 
    79015 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    79016 2.14, shown at level 0.000997, step 1, values float32 
    79017 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    79018 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79019 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    79020 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79021 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    79022 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79023 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    79024 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79025 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    79026 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79027 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    79028 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79029 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    79030 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79031 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    79032 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79033 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    79034 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79035 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    79036 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79037 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    79038 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79039 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    79040 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79041 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    79042 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79043 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    79044 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79045 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    79046 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79047 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    79048 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79049 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    79050 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79051 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    79052 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79053 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    79054 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79055 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    79056 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79057 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    79058 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79059 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    79060 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79061 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    79062 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79063 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    79064 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79065 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    79066 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79067 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    79068 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79069 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    79070 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79071 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    79072 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79073 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    79074 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79075 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    79076 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79077 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    79078 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79079 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    79080 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79081 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    79082 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79083 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    79084 shown at level 0.0112, step 1, values float32 
    79085 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    79086 2.14, shown at level 0.00974, step 1, values float32 
    79087 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    79088 level 0.157, step 1, values float32 
    79089 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    79090 0.0283, step 1, values float32 
    79091 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    79092 level 0.00404, step 1, values float32 
    79093 Opened PflAB_wout_FlgYoverlap_imasked as #18, grid size 200,200,200, pixel
    79094 2.14, shown at level 0.00045, step 1, values float32 
    79095 Opened PflC-only-Model-area.mrc as #19, grid size 200,200,200, pixel 2.14,
    79096 shown at level 0.00107, step 1, values float32 
    79097 Opened PflC-only-Model-area.mrc copy as #20, grid size 200,200,200, pixel
    79098 2.14, shown at level 0.00107, step 1, values float32 
    79099 Opened PflC-only-Model-area.mrc copy as #21, grid size 200,200,200, pixel
    79100 2.14, shown at level 0.00107, step 1, values float32 
    79101 Opened PflC-only-Model-area.mrc copy as #22, grid size 200,200,200, pixel
    79102 2.14, shown at level 0.00107, step 1, values float32 
    79103 Opened PflC-only-Model-area.mrc copy as #23, grid size 200,200,200, pixel
    79104 2.14, shown at level 0.00107, step 1, values float32 
    79105 Opened PflC-only-Model-area.mrc copy as #24, grid size 200,200,200, pixel
    79106 2.14, shown at level 0.00107, step 1, values float32 
    79107 Opened PflC-only-Model-area.mrc copy as #25, grid size 200,200,200, pixel
    79108 2.14, shown at level 0.00107, step 1, values float32 
    79109 Opened PflC-only-Model-area.mrc copy as #26, grid size 200,200,200, pixel
    79110 2.14, shown at level 0.00107, step 1, values float32 
    79111 Opened PflC-only-Model-area.mrc copy as #27, grid size 200,200,200, pixel
    79112 2.14, shown at level 0.00107, step 1, values float32 
    79113 Opened PflC-only-Model-area.mrc copy as #28, grid size 200,200,200, pixel
    79114 2.14, shown at level 0.00107, step 1, values float32 
    79115 Opened PflC-only-Model-area.mrc copy as #29, grid size 200,200,200, pixel
    79116 2.14, shown at level 0.00107, step 1, values float32 
    79117 Opened PflC-only-Model-area.mrc copy as #30, grid size 200,200,200, pixel
    79118 2.14, shown at level 0.00107, step 1, values float32 
    79119 Opened PflC-only-Model-area.mrc copy as #31, grid size 200,200,200, pixel
    79120 2.14, shown at level 0.00107, step 1, values float32 
    79121 Opened PflC-only-Model-area.mrc copy as #32, grid size 200,200,200, pixel
    79122 2.14, shown at level 0.00107, step 1, values float32 
    79123 Opened PflC-only-Model-area.mrc copy as #33, grid size 200,200,200, pixel
    79124 2.14, shown at level 0.00107, step 1, values float32 
    79125 Opened PflC-only-Model-area.mrc copy as #34, grid size 200,200,200, pixel
    79126 2.14, shown at level 0.00107, step 1, values float32 
    79127 Opened PflC-only-Model-area.mrc copy as #35, grid size 200,200,200, pixel
    79128 2.14, shown at level 0.00107, step 1, values float32 
    79129 Opened PflC-only-Model-area.mrc copy as #36, grid size 200,200,200, pixel
    79130 2.14, shown at level 0.00107, step 1, values float32 
    79131 Opened Long-cage.mrc as #37, grid size 200,200,200, pixel 2.14, shown at level
    79132 0.00404, step 1, values float32 
    79133 Opened Short-cage.mrc as #38, grid size 200,200,200, pixel 2.14, shown at
    79134 level 0.00404, step 1, values float32 
    79135 Opened Other-PflC.mrc as #39, grid size 200,200,200, pixel 2.14, shown at
    79136 level 0.00404, step 1, values float32 
    79137 Opened Long-cage_imasked as #45, grid size 200,200,200, pixel 2.14, shown at
    79138 level 0.00404, step 1, values float32 
    79139 Opened Short-cage_imasked as #46, grid size 200,200,200, pixel 2.14, shown at
    79140 level 0.00404, step 1, values float32 
    79141 Opened Short-cage.mrc copy as #65, grid size 200,200,200, pixel 2.14, shown at
    79142 level 0.00404, step 1, values float32 
    79143 Opened Short-cage.mrc copy as #66, grid size 200,200,200, pixel 2.14, shown at
    79144 level 0.00404, step 1, values float32 
    79145 Opened Short-cage.mrc copy as #67, grid size 200,200,200, pixel 2.14, shown at
    79146 level 0.00404, step 1, values float32 
    79147 Opened Short-cage.mrc copy as #68, grid size 200,200,200, pixel 2.14, shown at
    79148 level 0.00404, step 1, values float32 
    79149 Opened Short-cage.mrc copy as #69, grid size 200,200,200, pixel 2.14, shown at
    79150 level 0.00404, step 1, values float32 
    79151 Opened Short-cage.mrc copy as #70, grid size 200,200,200, pixel 2.14, shown at
    79152 level 0.00404, step 1, values float32 
    79153 Opened Short-cage.mrc copy as #71, grid size 200,200,200, pixel 2.14, shown at
    79154 level 0.00404, step 1, values float32 
    79155 Opened Short-cage.mrc copy as #72, grid size 200,200,200, pixel 2.14, shown at
    79156 level 0.00404, step 1, values float32 
    79157 Opened Short-cage.mrc copy as #73, grid size 200,200,200, pixel 2.14, shown at
    79158 level 0.00404, step 1, values float32 
    79159 Opened Short-cage.mrc copy as #74, grid size 200,200,200, pixel 2.14, shown at
    79160 level 0.00404, step 1, values float32 
    79161 Opened Short-cage.mrc copy as #75, grid size 200,200,200, pixel 2.14, shown at
    79162 level 0.00404, step 1, values float32 
    79163 Opened Short-cage.mrc copy as #76, grid size 200,200,200, pixel 2.14, shown at
    79164 level 0.00404, step 1, values float32 
    79165 Opened Short-cage.mrc copy as #77, grid size 200,200,200, pixel 2.14, shown at
    79166 level 0.00404, step 1, values float32 
    79167 Opened Short-cage.mrc copy as #78, grid size 200,200,200, pixel 2.14, shown at
    79168 level 0.00404, step 1, values float32 
    79169 Opened Short-cage.mrc copy as #79, grid size 200,200,200, pixel 2.14, shown at
    79170 level 0.00404, step 1, values float32 
    79171 Opened Short-cage.mrc copy as #80, grid size 200,200,200, pixel 2.14, shown at
    79172 level 0.00404, step 1, values float32 
    79173 Opened Short-cage.mrc copy as #81, grid size 200,200,200, pixel 2.14, shown at
    79174 level 0.00404, step 1, values float32 
    79175 Opened Long-cage.mrc copy as #84, grid size 200,200,200, pixel 2.14, shown at
    79176 level 0.00404, step 1, values float32 
    79177 Opened Long-cage.mrc as #86, grid size 200,200,200, pixel 2.14, shown at level
    79178 0.00261, step 1, values float32 
    79179 Opened PflC-region-long-cage.mrc as #90, grid size 200,200,200, pixel 2.14,
    79180 shown at level 0.00261, step 1, values float32 
    79181 Opened PflD-Longcage-region.mrc as #91, grid size 200,200,200, pixel 2.14,
    79182 shown at level 0.00261, step 1, values float32 
    79183 Opened PflC-region-long-cage.mrc copy as #49, grid size 200,200,200, pixel
    79184 2.14, shown at level 0.00261, step 1, values float32 
    79185 Opened PflC-region-long-cage.mrc copy as #50, grid size 200,200,200, pixel
    79186 2.14, shown at level 0.00261, step 1, values float32 
    79187 Opened PflC-region-long-cage.mrc copy as #51, grid size 200,200,200, pixel
    79188 2.14, shown at level 0.00261, step 1, values float32 
    79189 Opened PflC-region-long-cage.mrc copy as #52, grid size 200,200,200, pixel
    79190 2.14, shown at level 0.00261, step 1, values float32 
    79191 Opened PflC-region-long-cage.mrc copy as #53, grid size 200,200,200, pixel
    79192 2.14, shown at level 0.00261, step 1, values float32 
    79193 Opened PflC-region-long-cage.mrc copy as #54, grid size 200,200,200, pixel
    79194 2.14, shown at level 0.00261, step 1, values float32 
    79195 Opened PflC-region-long-cage.mrc copy as #55, grid size 200,200,200, pixel
    79196 2.14, shown at level 0.00261, step 1, values float32 
    79197 Opened PflC-region-long-cage.mrc copy as #56, grid size 200,200,200, pixel
    79198 2.14, shown at level 0.00261, step 1, values float32 
    79199 Opened PflC-region-long-cage.mrc copy as #57, grid size 200,200,200, pixel
    79200 2.14, shown at level 0.00261, step 1, values float32 
    79201 Opened PflC-region-long-cage.mrc copy as #58, grid size 200,200,200, pixel
    79202 2.14, shown at level 0.00261, step 1, values float32 
    79203 Opened PflC-region-long-cage.mrc copy as #59, grid size 200,200,200, pixel
    79204 2.14, shown at level 0.00261, step 1, values float32 
    79205 Opened PflC-region-long-cage.mrc copy as #60, grid size 200,200,200, pixel
    79206 2.14, shown at level 0.00261, step 1, values float32 
    79207 Opened PflC-region-long-cage.mrc copy as #61, grid size 200,200,200, pixel
    79208 2.14, shown at level 0.00261, step 1, values float32 
    79209 Opened PflC-region-long-cage.mrc copy as #62, grid size 200,200,200, pixel
    79210 2.14, shown at level 0.00261, step 1, values float32 
    79211 Opened PflC-region-long-cage.mrc copy as #63, grid size 200,200,200, pixel
    79212 2.14, shown at level 0.00261, step 1, values float32 
    79213 Opened PflC-region-long-cage.mrc copy as #64, grid size 200,200,200, pixel
    79214 2.14, shown at level 0.00261, step 1, values float32 
    79215 Opened PflD-Longcage-region.mrc copy as #93, grid size 200,200,200, pixel
    79216 2.14, shown at level 0.00261, step 1, values float32 
    79217 Opened PflD-Longcage-region.mrc copy as #94, grid size 200,200,200, pixel
    79218 2.14, shown at level 0.00261, step 1, values float32 
    79219 Opened PflD-Longcage-region.mrc copy as #95, grid size 200,200,200, pixel
    79220 2.14, shown at level 0.00261, step 1, values float32 
    79221 Opened PflD-Longcage-region.mrc copy as #96, grid size 200,200,200, pixel
    79222 2.14, shown at level 0.00261, step 1, values float32 
    79223 Opened PflD-Longcage-region.mrc copy as #97, grid size 200,200,200, pixel
    79224 2.14, shown at level 0.00261, step 1, values float32 
    79225 Opened PflD-Longcage-region.mrc copy as #98, grid size 200,200,200, pixel
    79226 2.14, shown at level 0.00261, step 1, values float32 
    79227 Opened PflD-Longcage-region.mrc copy as #99, grid size 200,200,200, pixel
    79228 2.14, shown at level 0.00261, step 1, values float32 
    79229 Opened PflD-Longcage-region.mrc copy as #100, grid size 200,200,200, pixel
    79230 2.14, shown at level 0.00261, step 1, values float32 
    79231 Opened PflD-Longcage-region.mrc copy as #101, grid size 200,200,200, pixel
    79232 2.14, shown at level 0.00261, step 1, values float32 
    79233 Opened PflD-Longcage-region.mrc copy as #102, grid size 200,200,200, pixel
    79234 2.14, shown at level 0.00261, step 1, values float32 
    79235 Opened PflD-Longcage-region.mrc copy as #103, grid size 200,200,200, pixel
    79236 2.14, shown at level 0.00261, step 1, values float32 
    79237 Opened PflD-Longcage-region.mrc copy as #104, grid size 200,200,200, pixel
    79238 2.14, shown at level 0.00261, step 1, values float32 
    79239 Opened PflD-Longcage-region.mrc copy as #105, grid size 200,200,200, pixel
    79240 2.14, shown at level 0.00261, step 1, values float32 
    79241 Opened PflD-Longcage-region.mrc copy as #106, grid size 200,200,200, pixel
    79242 2.14, shown at level 0.00261, step 1, values float32 
    79243 Opened PflD-Longcage-region.mrc copy as #210, grid size 200,200,200, pixel
    79244 2.14, shown at level 0.00261, step 1, values float32 
    79245 Opened PflD-Longcage-region.mrc copy as #211, grid size 200,200,200, pixel
    79246 2.14, shown at level 0.00261, step 1, values float32 
    79247 Opened PflD-Longcage-region.mrc copy as #212, grid size 200,200,200, pixel
    79248 2.14, shown at level 0.00261, step 1, values float32 
    79249 Opened PflD-Longcage-region.mrc copy as #213, grid size 200,200,200, pixel
    79250 2.14, shown at level 0.00261, step 1, values float32 
    79251 opened ChimeraX session 
    79252 Showing Long-cage.seg - 559 regions, 559 surfaces 
    79253 
    79254 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    79255 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    79256 > review/Manuscript/09262025/Comtenue--9252026/Contenue-
    79257 > ver2-Fig3_from_09252025.cxs"
    79258 
    79259 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    79260 level 0.0137, step 1, values float32 
    79261 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    79262 step 1, values float32 
    79263 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    79264 level 0.0137, step 1, values float32 
    79265 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    79266 level 0.0137, step 1, values float32 
    79267 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    79268 level 0.027, step 1, values float32 
    79269 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    79270 step 1, values float32 
    79271 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    79272 level 0.0166, step 1, values float32 
    79273 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    79274 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79275 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    79276 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79277 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    79278 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79279 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    79280 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79281 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    79282 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79283 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    79284 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79285 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    79286 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79287 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    79288 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79289 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    79290 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79291 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    79292 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79293 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    79294 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79295 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    79296 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79297 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    79298 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79299 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    79300 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79301 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    79302 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79303 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    79304 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79305 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    79306 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79307 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    79308 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79309 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    79310 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79311 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    79312 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79313 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    79314 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79315 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    79316 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79317 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    79318 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79319 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    79320 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79321 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    79322 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79323 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    79324 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79325 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    79326 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79327 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    79328 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79329 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    79330 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79331 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    79332 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79333 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    79334 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79335 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    79336 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79337 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    79338 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79339 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    79340 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79341 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    79342 shown at level 0.000785, step 1, values float32 
    79343 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    79344 shown at level 0.000785, step 1, values float32 
    79345 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    79346 shown at level 0.000785, step 1, values float32 
    79347 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    79348 shown at level 0.000785, step 1, values float32 
    79349 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    79350 shown at level 0.000785, step 1, values float32 
    79351 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    79352 shown at level 0.000785, step 1, values float32 
    79353 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    79354 shown at level 0.000785, step 1, values float32 
    79355 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    79356 shown at level 0.000785, step 1, values float32 
    79357 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    79358 shown at level 0.000785, step 1, values float32 
    79359 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    79360 shown at level 0.000785, step 1, values float32 
    79361 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    79362 shown at level 0.000785, step 1, values float32 
    79363 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    79364 shown at level 0.000785, step 1, values float32 
    79365 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    79366 shown at level 0.000785, step 1, values float32 
    79367 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    79368 shown at level 0.000785, step 1, values float32 
    79369 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    79370 shown at level 0.000785, step 1, values float32 
    79371 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    79372 shown at level 0.000785, step 1, values float32 
    79373 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    79374 shown at level 0.000785, step 1, values float32 
    79375 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    79376 shown at level 0.00107, step 1, values float32 
    79377 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    79378 shown at level 0.00107, step 1, values float32 
    79379 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    79380 shown at level 0.00107, step 1, values float32 
    79381 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    79382 shown at level 0.00107, step 1, values float32 
    79383 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    79384 shown at level 0.00107, step 1, values float32 
    79385 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    79386 shown at level 0.00107, step 1, values float32 
    79387 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    79388 shown at level 0.00107, step 1, values float32 
    79389 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    79390 shown at level 0.00107, step 1, values float32 
    79391 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    79392 shown at level 0.00107, step 1, values float32 
    79393 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    79394 shown at level 0.00107, step 1, values float32 
    79395 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    79396 shown at level 0.00107, step 1, values float32 
    79397 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    79398 shown at level 0.00107, step 1, values float32 
    79399 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    79400 shown at level 0.00107, step 1, values float32 
    79401 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    79402 shown at level 0.00107, step 1, values float32 
    79403 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    79404 shown at level 0.00107, step 1, values float32 
    79405 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    79406 shown at level 0.00107, step 1, values float32 
    79407 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    79408 shown at level 0.00107, step 1, values float32 
    79409 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    79410 shown at level 0.000848, step 1, values float32 
    79411 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    79412 shown at level 0.000848, step 1, values float32 
    79413 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    79414 shown at level 0.000848, step 1, values float32 
    79415 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    79416 shown at level 0.000848, step 1, values float32 
    79417 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    79418 shown at level 0.000848, step 1, values float32 
    79419 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    79420 shown at level 0.000848, step 1, values float32 
    79421 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    79422 shown at level 0.000848, step 1, values float32 
    79423 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    79424 shown at level 0.000848, step 1, values float32 
    79425 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    79426 shown at level 0.000848, step 1, values float32 
    79427 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    79428 shown at level 0.000848, step 1, values float32 
    79429 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    79430 shown at level 0.000848, step 1, values float32 
    79431 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    79432 shown at level 0.000848, step 1, values float32 
    79433 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    79434 shown at level 0.000848, step 1, values float32 
    79435 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    79436 shown at level 0.000848, step 1, values float32 
    79437 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    79438 shown at level 0.000848, step 1, values float32 
    79439 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    79440 shown at level 0.000848, step 1, values float32 
    79441 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    79442 shown at level 0.000848, step 1, values float32 
    79443 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    79444 2.14, shown at level 0.000997, step 1, values float32 
    79445 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    79446 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79447 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    79448 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79449 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    79450 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79451 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    79452 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79453 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    79454 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79455 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    79456 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79457 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    79458 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79459 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    79460 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79461 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    79462 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79463 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    79464 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79465 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    79466 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79467 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    79468 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79469 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    79470 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79471 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    79472 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79473 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    79474 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79475 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    79476 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79477 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    79478 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79479 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    79480 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79481 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    79482 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79483 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    79484 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79485 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    79486 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79487 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    79488 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79489 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    79490 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79491 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    79492 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79493 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    79494 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79495 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    79496 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79497 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    79498 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79499 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    79500 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79501 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    79502 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79503 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    79504 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79505 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    79506 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79507 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    79508 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79509 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    79510 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79511 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    79512 shown at level 0.0112, step 1, values float32 
    79513 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    79514 2.14, shown at level 0.00974, step 1, values float32 
    79515 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    79516 level 0.157, step 1, values float32 
    79517 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    79518 0.0283, step 1, values float32 
    79519 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    79520 level 0.00404, step 1, values float32 
    79521 Opened PflAB_wout_FlgYoverlap_imasked as #18, grid size 200,200,200, pixel
    79522 2.14, shown at level 0.00045, step 1, values float32 
    79523 Opened PflC-only-Model-area.mrc as #19, grid size 200,200,200, pixel 2.14,
    79524 shown at level 0.00107, step 1, values float32 
    79525 Opened PflC-only-Model-area.mrc copy as #20, grid size 200,200,200, pixel
    79526 2.14, shown at level 0.00107, step 1, values float32 
    79527 Opened PflC-only-Model-area.mrc copy as #21, grid size 200,200,200, pixel
    79528 2.14, shown at level 0.00107, step 1, values float32 
    79529 Opened PflC-only-Model-area.mrc copy as #22, grid size 200,200,200, pixel
    79530 2.14, shown at level 0.00107, step 1, values float32 
    79531 Opened PflC-only-Model-area.mrc copy as #23, grid size 200,200,200, pixel
    79532 2.14, shown at level 0.00107, step 1, values float32 
    79533 Opened PflC-only-Model-area.mrc copy as #24, grid size 200,200,200, pixel
    79534 2.14, shown at level 0.00107, step 1, values float32 
    79535 Opened PflC-only-Model-area.mrc copy as #25, grid size 200,200,200, pixel
    79536 2.14, shown at level 0.00107, step 1, values float32 
    79537 Opened PflC-only-Model-area.mrc copy as #26, grid size 200,200,200, pixel
    79538 2.14, shown at level 0.00107, step 1, values float32 
    79539 Opened PflC-only-Model-area.mrc copy as #27, grid size 200,200,200, pixel
    79540 2.14, shown at level 0.00107, step 1, values float32 
    79541 Opened PflC-only-Model-area.mrc copy as #28, grid size 200,200,200, pixel
    79542 2.14, shown at level 0.00107, step 1, values float32 
    79543 Opened PflC-only-Model-area.mrc copy as #29, grid size 200,200,200, pixel
    79544 2.14, shown at level 0.00107, step 1, values float32 
    79545 Opened PflC-only-Model-area.mrc copy as #30, grid size 200,200,200, pixel
    79546 2.14, shown at level 0.00107, step 1, values float32 
    79547 Opened PflC-only-Model-area.mrc copy as #31, grid size 200,200,200, pixel
    79548 2.14, shown at level 0.00107, step 1, values float32 
    79549 Opened PflC-only-Model-area.mrc copy as #32, grid size 200,200,200, pixel
    79550 2.14, shown at level 0.00107, step 1, values float32 
    79551 Opened PflC-only-Model-area.mrc copy as #33, grid size 200,200,200, pixel
    79552 2.14, shown at level 0.00107, step 1, values float32 
    79553 Opened PflC-only-Model-area.mrc copy as #34, grid size 200,200,200, pixel
    79554 2.14, shown at level 0.00107, step 1, values float32 
    79555 Opened PflC-only-Model-area.mrc copy as #35, grid size 200,200,200, pixel
    79556 2.14, shown at level 0.00107, step 1, values float32 
    79557 Opened PflC-only-Model-area.mrc copy as #36, grid size 200,200,200, pixel
    79558 2.14, shown at level 0.00107, step 1, values float32 
    79559 Opened Long-cage.mrc as #37, grid size 200,200,200, pixel 2.14, shown at level
    79560 0.00404, step 1, values float32 
    79561 Opened Short-cage.mrc as #38, grid size 200,200,200, pixel 2.14, shown at
    79562 level 0.00404, step 1, values float32 
    79563 Opened Other-PflC.mrc as #39, grid size 200,200,200, pixel 2.14, shown at
    79564 level 0.00404, step 1, values float32 
    79565 Opened Long-cage_imasked as #45, grid size 200,200,200, pixel 2.14, shown at
    79566 level 0.00404, step 1, values float32 
    79567 Opened Short-cage_imasked as #46, grid size 200,200,200, pixel 2.14, shown at
    79568 level 0.00404, step 1, values float32 
    79569 Opened Short-cage.mrc copy as #65, grid size 200,200,200, pixel 2.14, shown at
    79570 level 0.00404, step 1, values float32 
    79571 Opened Short-cage.mrc copy as #66, grid size 200,200,200, pixel 2.14, shown at
    79572 level 0.00404, step 1, values float32 
    79573 Opened Short-cage.mrc copy as #67, grid size 200,200,200, pixel 2.14, shown at
    79574 level 0.00404, step 1, values float32 
    79575 Opened Short-cage.mrc copy as #68, grid size 200,200,200, pixel 2.14, shown at
    79576 level 0.00404, step 1, values float32 
    79577 Opened Short-cage.mrc copy as #69, grid size 200,200,200, pixel 2.14, shown at
    79578 level 0.00404, step 1, values float32 
    79579 Opened Short-cage.mrc copy as #70, grid size 200,200,200, pixel 2.14, shown at
    79580 level 0.00404, step 1, values float32 
    79581 Opened Short-cage.mrc copy as #71, grid size 200,200,200, pixel 2.14, shown at
    79582 level 0.00404, step 1, values float32 
    79583 Opened Short-cage.mrc copy as #72, grid size 200,200,200, pixel 2.14, shown at
    79584 level 0.00404, step 1, values float32 
    79585 Opened Short-cage.mrc copy as #73, grid size 200,200,200, pixel 2.14, shown at
    79586 level 0.00404, step 1, values float32 
    79587 Opened Short-cage.mrc copy as #74, grid size 200,200,200, pixel 2.14, shown at
    79588 level 0.00404, step 1, values float32 
    79589 Opened Short-cage.mrc copy as #75, grid size 200,200,200, pixel 2.14, shown at
    79590 level 0.00404, step 1, values float32 
    79591 Opened Short-cage.mrc copy as #76, grid size 200,200,200, pixel 2.14, shown at
    79592 level 0.00404, step 1, values float32 
    79593 Opened Short-cage.mrc copy as #77, grid size 200,200,200, pixel 2.14, shown at
    79594 level 0.00404, step 1, values float32 
    79595 Opened Short-cage.mrc copy as #78, grid size 200,200,200, pixel 2.14, shown at
    79596 level 0.00404, step 1, values float32 
    79597 Opened Short-cage.mrc copy as #79, grid size 200,200,200, pixel 2.14, shown at
    79598 level 0.00404, step 1, values float32 
    79599 Opened Short-cage.mrc copy as #80, grid size 200,200,200, pixel 2.14, shown at
    79600 level 0.00404, step 1, values float32 
    79601 Opened Short-cage.mrc copy as #81, grid size 200,200,200, pixel 2.14, shown at
    79602 level 0.00404, step 1, values float32 
    79603 Opened Long-cage.mrc copy as #84, grid size 200,200,200, pixel 2.14, shown at
    79604 level 0.00404, step 1, values float32 
    79605 Opened Long-cage.mrc as #86, grid size 200,200,200, pixel 2.14, shown at level
    79606 0.00261, step 1, values float32 
    79607 Opened PflC-region-long-cage.mrc as #90, grid size 200,200,200, pixel 2.14,
    79608 shown at level 0.00261, step 1, values float32 
    79609 Opened PflD-Longcage-region.mrc as #91, grid size 200,200,200, pixel 2.14,
    79610 shown at level 0.00261, step 1, values float32 
    79611 Opened PflC-region-long-cage.mrc copy as #49, grid size 200,200,200, pixel
    79612 2.14, shown at level 0.00261, step 1, values float32 
    79613 Opened PflC-region-long-cage.mrc copy as #50, grid size 200,200,200, pixel
    79614 2.14, shown at level 0.00261, step 1, values float32 
    79615 Opened PflC-region-long-cage.mrc copy as #51, grid size 200,200,200, pixel
    79616 2.14, shown at level 0.00261, step 1, values float32 
    79617 Opened PflC-region-long-cage.mrc copy as #52, grid size 200,200,200, pixel
    79618 2.14, shown at level 0.00261, step 1, values float32 
    79619 Opened PflC-region-long-cage.mrc copy as #53, grid size 200,200,200, pixel
    79620 2.14, shown at level 0.00261, step 1, values float32 
    79621 Opened PflC-region-long-cage.mrc copy as #54, grid size 200,200,200, pixel
    79622 2.14, shown at level 0.00261, step 1, values float32 
    79623 Opened PflC-region-long-cage.mrc copy as #55, grid size 200,200,200, pixel
    79624 2.14, shown at level 0.00261, step 1, values float32 
    79625 Opened PflC-region-long-cage.mrc copy as #56, grid size 200,200,200, pixel
    79626 2.14, shown at level 0.00261, step 1, values float32 
    79627 Opened PflC-region-long-cage.mrc copy as #57, grid size 200,200,200, pixel
    79628 2.14, shown at level 0.00261, step 1, values float32 
    79629 Opened PflC-region-long-cage.mrc copy as #58, grid size 200,200,200, pixel
    79630 2.14, shown at level 0.00261, step 1, values float32 
    79631 Opened PflC-region-long-cage.mrc copy as #59, grid size 200,200,200, pixel
    79632 2.14, shown at level 0.00261, step 1, values float32 
    79633 Opened PflC-region-long-cage.mrc copy as #60, grid size 200,200,200, pixel
    79634 2.14, shown at level 0.00261, step 1, values float32 
    79635 Opened PflC-region-long-cage.mrc copy as #61, grid size 200,200,200, pixel
    79636 2.14, shown at level 0.00261, step 1, values float32 
    79637 Opened PflC-region-long-cage.mrc copy as #62, grid size 200,200,200, pixel
    79638 2.14, shown at level 0.00261, step 1, values float32 
    79639 Opened PflC-region-long-cage.mrc copy as #63, grid size 200,200,200, pixel
    79640 2.14, shown at level 0.00261, step 1, values float32 
    79641 Opened PflC-region-long-cage.mrc copy as #64, grid size 200,200,200, pixel
    79642 2.14, shown at level 0.00261, step 1, values float32 
    79643 Opened PflD-Longcage-region.mrc copy as #93, grid size 200,200,200, pixel
    79644 2.14, shown at level 0.00261, step 1, values float32 
    79645 Opened PflD-Longcage-region.mrc copy as #94, grid size 200,200,200, pixel
    79646 2.14, shown at level 0.00261, step 1, values float32 
    79647 Opened PflD-Longcage-region.mrc copy as #95, grid size 200,200,200, pixel
    79648 2.14, shown at level 0.00261, step 1, values float32 
    79649 Opened PflD-Longcage-region.mrc copy as #96, grid size 200,200,200, pixel
    79650 2.14, shown at level 0.00261, step 1, values float32 
    79651 Opened PflD-Longcage-region.mrc copy as #97, grid size 200,200,200, pixel
    79652 2.14, shown at level 0.00261, step 1, values float32 
    79653 Opened PflD-Longcage-region.mrc copy as #98, grid size 200,200,200, pixel
    79654 2.14, shown at level 0.00261, step 1, values float32 
    79655 Opened PflD-Longcage-region.mrc copy as #99, grid size 200,200,200, pixel
    79656 2.14, shown at level 0.00261, step 1, values float32 
    79657 Opened PflD-Longcage-region.mrc copy as #100, grid size 200,200,200, pixel
    79658 2.14, shown at level 0.00261, step 1, values float32 
    79659 Opened PflD-Longcage-region.mrc copy as #101, grid size 200,200,200, pixel
    79660 2.14, shown at level 0.00261, step 1, values float32 
    79661 Opened PflD-Longcage-region.mrc copy as #102, grid size 200,200,200, pixel
    79662 2.14, shown at level 0.00261, step 1, values float32 
    79663 Opened PflD-Longcage-region.mrc copy as #103, grid size 200,200,200, pixel
    79664 2.14, shown at level 0.00261, step 1, values float32 
    79665 Opened PflD-Longcage-region.mrc copy as #104, grid size 200,200,200, pixel
    79666 2.14, shown at level 0.00261, step 1, values float32 
    79667 Opened PflD-Longcage-region.mrc copy as #105, grid size 200,200,200, pixel
    79668 2.14, shown at level 0.00261, step 1, values float32 
    79669 Opened PflD-Longcage-region.mrc copy as #106, grid size 200,200,200, pixel
    79670 2.14, shown at level 0.00261, step 1, values float32 
    79671 Opened PflD-Longcage-region.mrc copy as #210, grid size 200,200,200, pixel
    79672 2.14, shown at level 0.00261, step 1, values float32 
    79673 Opened PflD-Longcage-region.mrc copy as #211, grid size 200,200,200, pixel
    79674 2.14, shown at level 0.00261, step 1, values float32 
    79675 Opened PflD-Longcage-region.mrc copy as #212, grid size 200,200,200, pixel
    79676 2.14, shown at level 0.00261, step 1, values float32 
    79677 Opened PflD-Longcage-region.mrc copy as #213, grid size 200,200,200, pixel
    79678 2.14, shown at level 0.00261, step 1, values float32 
    79679 opened ChimeraX session 
    79680 Showing Long-cage.seg - 559 regions, 559 surfaces 
    79681 
    79682 > hide #!17 models
    79683 
    79684 > select add #47.17
    79685 
    79686 9213 atoms, 9399 bonds, 1 pseudobond, 1123 residues, 2 models selected 
    79687 
    79688 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Long-cage.pdb
    79689 > selectedOnly true
    79690 
    79691 > select subtract #47.17
    79692 
    79693 5 models selected 
    79694 
    79695 > show #!48 models
    79696 
    79697 > hide #!47 models
    79698 
    79699 > select add #48.17
    79700 
    79701 6359 atoms, 6486 bonds, 1 pseudobond, 767 residues, 2 models selected 
    79702 
    79703 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Short-cage.pdb
    79704 > selectedOnly true
    79705 
    79706 > close session
    79707 
    79708 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    79709 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    79710 > review/Manuscript/09262025/New Images/Composition-Transparent-Fig2.cxs"
    79711 
    79712 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    79713 level 0.0137, step 1, values float32 
    79714 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    79715 step 1, values float32 
    79716 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    79717 level 0.0137, step 1, values float32 
    79718 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    79719 level 0.0137, step 1, values float32 
    79720 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    79721 level 0.027, step 1, values float32 
    79722 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    79723 step 1, values float32 
    79724 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    79725 level 0.0166, step 1, values float32 
    79726 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    79727 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79728 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    79729 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79730 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    79731 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79732 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    79733 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79734 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    79735 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79736 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    79737 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79738 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    79739 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79740 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    79741 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79742 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    79743 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79744 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    79745 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79746 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    79747 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79748 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    79749 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79750 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    79751 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79752 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    79753 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79754 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    79755 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79756 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    79757 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79758 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    79759 pixel 2.14, shown at level 0.000576, step 1, values float32 
    79760 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    79761 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79762 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    79763 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79764 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    79765 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79766 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    79767 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79768 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    79769 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79770 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    79771 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79772 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    79773 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79774 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    79775 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79776 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    79777 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79778 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    79779 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79780 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    79781 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79782 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    79783 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79784 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    79785 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79786 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    79787 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79788 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    79789 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79790 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    79791 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79792 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    79793 pixel 2.14, shown at level 0.000793, step 1, values float32 
    79794 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    79795 shown at level 0.000785, step 1, values float32 
    79796 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    79797 shown at level 0.000785, step 1, values float32 
    79798 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    79799 shown at level 0.000785, step 1, values float32 
    79800 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    79801 shown at level 0.000785, step 1, values float32 
    79802 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    79803 shown at level 0.000785, step 1, values float32 
    79804 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    79805 shown at level 0.000785, step 1, values float32 
    79806 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    79807 shown at level 0.000785, step 1, values float32 
    79808 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    79809 shown at level 0.000785, step 1, values float32 
    79810 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    79811 shown at level 0.000785, step 1, values float32 
    79812 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    79813 shown at level 0.000785, step 1, values float32 
    79814 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    79815 shown at level 0.000785, step 1, values float32 
    79816 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    79817 shown at level 0.000785, step 1, values float32 
    79818 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    79819 shown at level 0.000785, step 1, values float32 
    79820 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    79821 shown at level 0.000785, step 1, values float32 
    79822 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    79823 shown at level 0.000785, step 1, values float32 
    79824 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    79825 shown at level 0.000785, step 1, values float32 
    79826 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    79827 shown at level 0.000785, step 1, values float32 
    79828 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    79829 shown at level 0.00107, step 1, values float32 
    79830 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    79831 shown at level 0.00107, step 1, values float32 
    79832 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    79833 shown at level 0.00107, step 1, values float32 
    79834 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    79835 shown at level 0.00107, step 1, values float32 
    79836 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    79837 shown at level 0.00107, step 1, values float32 
    79838 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    79839 shown at level 0.00107, step 1, values float32 
    79840 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    79841 shown at level 0.00107, step 1, values float32 
    79842 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    79843 shown at level 0.00107, step 1, values float32 
    79844 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    79845 shown at level 0.00107, step 1, values float32 
    79846 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    79847 shown at level 0.00107, step 1, values float32 
    79848 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    79849 shown at level 0.00107, step 1, values float32 
    79850 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    79851 shown at level 0.00107, step 1, values float32 
    79852 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    79853 shown at level 0.00107, step 1, values float32 
    79854 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    79855 shown at level 0.00107, step 1, values float32 
    79856 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    79857 shown at level 0.00107, step 1, values float32 
    79858 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    79859 shown at level 0.00107, step 1, values float32 
    79860 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    79861 shown at level 0.00107, step 1, values float32 
    79862 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    79863 shown at level 0.000848, step 1, values float32 
    79864 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    79865 shown at level 0.000848, step 1, values float32 
    79866 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    79867 shown at level 0.000848, step 1, values float32 
    79868 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    79869 shown at level 0.000848, step 1, values float32 
    79870 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    79871 shown at level 0.000848, step 1, values float32 
    79872 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    79873 shown at level 0.000848, step 1, values float32 
    79874 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    79875 shown at level 0.000848, step 1, values float32 
    79876 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    79877 shown at level 0.000848, step 1, values float32 
    79878 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    79879 shown at level 0.000848, step 1, values float32 
    79880 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    79881 shown at level 0.000848, step 1, values float32 
    79882 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    79883 shown at level 0.000848, step 1, values float32 
    79884 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    79885 shown at level 0.000848, step 1, values float32 
    79886 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    79887 shown at level 0.000848, step 1, values float32 
    79888 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    79889 shown at level 0.000848, step 1, values float32 
    79890 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    79891 shown at level 0.000848, step 1, values float32 
    79892 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    79893 shown at level 0.000848, step 1, values float32 
    79894 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    79895 shown at level 0.000848, step 1, values float32 
    79896 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    79897 2.14, shown at level 0.000997, step 1, values float32 
    79898 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    79899 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79900 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    79901 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79902 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    79903 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79904 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    79905 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79906 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    79907 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79908 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    79909 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79910 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    79911 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79912 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    79913 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79914 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    79915 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79916 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    79917 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79918 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    79919 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79920 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    79921 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79922 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    79923 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79924 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    79925 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79926 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    79927 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79928 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    79929 pixel 2.14, shown at level 0.000997, step 1, values float32 
    79930 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    79931 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79932 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    79933 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79934 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    79935 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79936 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    79937 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79938 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    79939 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79940 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    79941 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79942 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    79943 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79944 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    79945 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79946 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    79947 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79948 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    79949 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79950 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    79951 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79952 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    79953 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79954 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    79955 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79956 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    79957 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79958 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    79959 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79960 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    79961 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79962 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    79963 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    79964 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    79965 shown at level 0.0112, step 1, values float32 
    79966 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    79967 2.14, shown at level 0.00974, step 1, values float32 
    79968 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    79969 level 0.157, step 1, values float32 
    79970 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    79971 0.0283, step 1, values float32 
    79972 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    79973 level 0.00404, step 1, values float32 
    79974 Opened 3xFlgY.mrc as #22, grid size 256,256,256, pixel 2.14, shown at level
    79975 0.0112, step 1, values float32 
    79976 Opened 1xPflB.mrc as #26, grid size 200,200,200, pixel 2.14, shown at level
    79977 0.00045, step 1, values float32 
    79978 Opened 1xFlgY.mrc as #29, grid size 256,256,256, pixel 2.14, shown at level
    79979 0.0112, step 1, values float32 
    79980 Opened 1xPflB.mrc as #30, grid size 200,200,200, pixel 2.14, shown at level
    79981 0.00045, step 1, values float32 
    79982 opened ChimeraX session 
    79983 Showing 3xFlgY.seg - 23 regions, 23 surfaces 
    79984 
    79985 > hide #!21 models
    79986 
    79987 > hide #!25 models
    79988 
    79989 > show #!25 models
    79990 
    79991 > select add #25
    79992 
    79993 78642 atoms, 79390 bonds, 9775 residues, 18 models selected 
    79994 Alignment identifier is 1 
    79995 Alignment identifier is 2 
    79996 
    79997 > select #25.1/s:788 #25.2/s:788 #25.3/s:788 #25.4/s:788 #25.5/s:788
    79998 > #25.6/s:788 #25.7/s:788 #25.8/s:788 #25.9/s:788 #25.10/s:788 #25.11/s:788
    79999 > #25.12/s:788 #25.13/s:788 #25.14/s:788 #25.15/s:788 #25.16/s:788
    80000 > #25.17/s:788
    80001 
    80002 170 atoms, 153 bonds, 17 residues, 17 models selected 
    80003 
    80004 > select #25.1/s #25.2/s #25.3/s #25.4/s #25.5/s #25.6/s #25.7/s #25.8/s
    80005 > #25.9/s #25.10/s #25.11/s #25.12/s #25.13/s #25.14/s #25.15/s #25.16/s
    80006 > #25.17/s
    80007 
    80008 36652 atoms, 37196 bonds, 4505 residues, 17 models selected 
    80009 2 [ID: 2] region 17 chains [1-265] RMSD: 281.686 
    80010  
    80011 
    80012 > hide sel cartoons
    80013 
    80014 > show #!13 models
    80015 
    80016 > hide #!13 models
    80017 
    80018 > show #!14 models
    80019 
    80020 > hide #!14 models
    80021 
    80022 > show #!15 models
    80023 
    80024 > hide #!231 models
    80025 
    80026 > show #!107 models
    80027 
    80028 > color #107 #a9a9a94c models
    80029 
    80030 > open /Users/shoichitachiyama/Desktop/Fig4-Final-models/Long-cage.pdb
    80031 
    80032 Chain information for Long-cage.pdb #31 
    80033 --- 
    80034 Chain | Description 
    80035 A | No description available 
    80036 B | No description available 
    80037 C | No description available 
    80038 X | No description available 
    80039 c | No description available 
    80040  
    80041 
    80042 > open /Users/shoichitachiyama/Desktop/Fig4-Final-models/Short-cage.pdb
    80043 
    80044 Chain information for Short-cage.pdb #32 
    80045 --- 
    80046 Chain | Description 
    80047 D | No description available 
    80048 E | No description available 
    80049 F | No description available 
    80050 L | No description available 
    80051  
    80052 
    80053 > select add #31
    80054 
    80055 45865 atoms, 46595 bonds, 1 pseudobond, 5628 residues, 36 models selected 
    80056 
    80057 > select add #32
    80058 
    80059 52224 atoms, 53081 bonds, 2 pseudobonds, 6395 residues, 38 models selected 
    80060 
    80061 > hide sel surfaces
    80062 
    80063 > hide sel atoms
    80064 
    80065 > show sel cartoons
    80066 
    80067 > select clear
    80068 
    80069 > show #!108 models
    80070 
    80071 > show #!117 models
    80072 
    80073 > show #!114 models
    80074 
    80075 > show #!115 models
    80076 
    80077 > color #115 #a9a9a94c models
    80078 
    80079 > hide #!107 models
    80080 
    80081 > hide #!108 models
    80082 
    80083 > hide #!114 models
    80084 
    80085 > hide #!115 models
    80086 
    80087 > hide #!117 models
    80088 
    80089 > select add #31
    80090 
    80091 9213 atoms, 9399 bonds, 1 pseudobond, 1123 residues, 2 models selected 
    80092 Alignment identifier is 31/A 
    80093 Alignment identifier is 31/B 
    80094 Alignment identifier is 31/C 
    80095 Alignment identifier is 31/X 
    80096 Alignment identifier is 31/c 
    80097 
    80098 > select add #32
    80099 
    80100 15572 atoms, 15885 bonds, 2 pseudobonds, 1890 residues, 4 models selected 
    80101 Alignment identifier is 1 
    80102 Alignment identifier is 2 
    80103 Alignment identifier is 3 
    80104 Alignment identifier is 4 
    80105 Alignment identifier is 31/c 
    80106 
    80107 > select clear
    80108 
    80109 > select #31/c:311
    80110 
    80111 6 atoms, 5 bonds, 1 residue, 1 model selected 
    80112 
    80113 > select #31/c:51-311
    80114 
    80115 2106 atoms, 2150 bonds, 261 residues, 1 model selected 
    80116 
    80117 > select clear
    80118 
    80119 > select #31/A:319 #32/D:319
    80120 
    80121 20 atoms, 18 bonds, 2 residues, 2 models selected 
    80122 
    80123 > select #31/A #32/D
    80124 
    80125 4288 atoms, 4373 bonds, 2 pseudobonds, 518 residues, 4 models selected 
    80126 1 [ID: 1] region chains A,D [1-259] RMSD: 42.712 
    80127  
    80128 
    80129 > color sel #a7c5d2ff models
    80130 
    80131 > color sel #5A97FF models
    80132 
    80133 > color sel #73e0ffff models
    80134 
    80135 > color sel #adffc1ff models
    80136 
    80137 > color sel #765FF3 models
    80138 
    80139 > select #31/A:319 #32/D:319
    80140 
    80141 20 atoms, 18 bonds, 2 residues, 2 models selected 
    80142 
    80143 > select #31/A #32/D
    80144 
    80145 4288 atoms, 4373 bonds, 2 pseudobonds, 518 residues, 4 models selected 
    80146 1 [ID: 1] region chains A,D [1-259] RMSD: 42.712 
    80147  
    80148 
    80149 > color (#!31-32 & sel) #a7c5d2ff
    80150 
    80151 > select clear
    80152 
    80153 > select #31/B:175 #32/E:175
    80154 
    80155 24 atoms, 22 bonds, 2 residues, 2 models selected 
    80156 
    80157 > select #31/B #32/E
    80158 
    80159 2916 atoms, 2978 bonds, 350 residues, 2 models selected 
    80160 2 [ID: 2] region chains B,E [1-175] RMSD: 63.267 
    80161  
    80162 
    80163 > color sel #5a97ffff
    80164 
    80165 > select clear
    80166 
    80167 > select #31/C:189 #32/F:189
    80168 
    80169 14 atoms, 12 bonds, 2 residues, 2 models selected 
    80170 
    80171 > select #31/C #32/F
    80172 
    80173 2804 atoms, 2844 bonds, 342 residues, 2 models selected 
    80174 3 [ID: 3] region chains C,F [1-171] RMSD: 63.641 
    80175  
    80176 
    80177 > color sel #73e0ffff
    80178 
    80179 > select clear
    80180 
    80181 > select #31/X:162 #32/L:162
    80182 
    80183 18 atoms, 16 bonds, 2 residues, 2 models selected 
    80184 
    80185 > select #31/X #32/L
    80186 
    80187 2710 atoms, 2776 bonds, 324 residues, 2 models selected 
    80188 4 [ID: 4] region chains L,X [1-162] RMSD: 61.587 
    80189  
    80190 
    80191 > color sel #adffc1ff
    80192 
    80193 > select clear
    80194 
    80195 > select #31/c:311-356
    80196 
    80197 354 atoms, 359 bonds, 46 residues, 1 model selected 
    80198 
    80199 > select #31/c
    80200 
    80201 2854 atoms, 2914 bonds, 356 residues, 1 model selected 
    80202 
    80203 > color sel #765ff3ff
    80204 
    80205 > select clear
    80206 
    80207 > show #!3 models
    80208 
    80209 > view orient
    80210 
    80211 > sym #31 C17 copies true center #3
    80212 
    80213 Made 17 copies for Long-cage.pdb symmetry C17 
    80214 
    80215 > sym #32 C17 copies true center #3
    80216 
    80217 Made 17 copies for Short-cage.pdb symmetry C17 
    80218 
    80219 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    80220 > model_09282025.cxs includeMaps true
    80221 
    80222 > close session
    80223 
    80224 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Lab Slides/Lab
    80225 > Meeting/2025/Sep_2025/CJ_Whole_models-Cut.cxs"
    80226 
    80227 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    80228 level 0.0137, step 1, values float32 
    80229 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    80230 step 1, values float32 
    80231 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    80232 level 0.0137, step 1, values float32 
    80233 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    80234 level 0.0137, step 1, values float32 
    80235 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    80236 level 0.027, step 1, values float32 
    80237 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    80238 step 1, values float32 
    80239 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    80240 level 0.0166, step 1, values float32 
    80241 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    80242 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80243 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    80244 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80245 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    80246 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80247 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    80248 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80249 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    80250 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80251 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    80252 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80253 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    80254 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80255 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    80256 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80257 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    80258 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80259 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    80260 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80261 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    80262 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80263 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    80264 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80265 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    80266 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80267 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    80268 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80269 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    80270 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80271 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    80272 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80273 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    80274 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80275 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    80276 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80277 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    80278 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80279 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    80280 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80281 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    80282 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80283 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    80284 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80285 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    80286 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80287 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    80288 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80289 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    80290 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80291 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    80292 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80293 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    80294 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80295 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    80296 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80297 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    80298 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80299 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    80300 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80301 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    80302 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80303 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    80304 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80305 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    80306 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80307 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    80308 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80309 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    80310 shown at level 0.000785, step 1, values float32 
    80311 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    80312 shown at level 0.000785, step 1, values float32 
    80313 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    80314 shown at level 0.000785, step 1, values float32 
    80315 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    80316 shown at level 0.000785, step 1, values float32 
    80317 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    80318 shown at level 0.000785, step 1, values float32 
    80319 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    80320 shown at level 0.000785, step 1, values float32 
    80321 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    80322 shown at level 0.000785, step 1, values float32 
    80323 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    80324 shown at level 0.000785, step 1, values float32 
    80325 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    80326 shown at level 0.000785, step 1, values float32 
    80327 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    80328 shown at level 0.000785, step 1, values float32 
    80329 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    80330 shown at level 0.000785, step 1, values float32 
    80331 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    80332 shown at level 0.000785, step 1, values float32 
    80333 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    80334 shown at level 0.000785, step 1, values float32 
    80335 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    80336 shown at level 0.000785, step 1, values float32 
    80337 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    80338 shown at level 0.000785, step 1, values float32 
    80339 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    80340 shown at level 0.000785, step 1, values float32 
    80341 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    80342 shown at level 0.000785, step 1, values float32 
    80343 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    80344 shown at level 0.00107, step 1, values float32 
    80345 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    80346 shown at level 0.00107, step 1, values float32 
    80347 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    80348 shown at level 0.00107, step 1, values float32 
    80349 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    80350 shown at level 0.00107, step 1, values float32 
    80351 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    80352 shown at level 0.00107, step 1, values float32 
    80353 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    80354 shown at level 0.00107, step 1, values float32 
    80355 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    80356 shown at level 0.00107, step 1, values float32 
    80357 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    80358 shown at level 0.00107, step 1, values float32 
    80359 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    80360 shown at level 0.00107, step 1, values float32 
    80361 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    80362 shown at level 0.00107, step 1, values float32 
    80363 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    80364 shown at level 0.00107, step 1, values float32 
    80365 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    80366 shown at level 0.00107, step 1, values float32 
    80367 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    80368 shown at level 0.00107, step 1, values float32 
    80369 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    80370 shown at level 0.00107, step 1, values float32 
    80371 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    80372 shown at level 0.00107, step 1, values float32 
    80373 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    80374 shown at level 0.00107, step 1, values float32 
    80375 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    80376 shown at level 0.00107, step 1, values float32 
    80377 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    80378 shown at level 0.000848, step 1, values float32 
    80379 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    80380 shown at level 0.000848, step 1, values float32 
    80381 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    80382 shown at level 0.000848, step 1, values float32 
    80383 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    80384 shown at level 0.000848, step 1, values float32 
    80385 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    80386 shown at level 0.000848, step 1, values float32 
    80387 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    80388 shown at level 0.000848, step 1, values float32 
    80389 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    80390 shown at level 0.000848, step 1, values float32 
    80391 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    80392 shown at level 0.000848, step 1, values float32 
    80393 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    80394 shown at level 0.000848, step 1, values float32 
    80395 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    80396 shown at level 0.000848, step 1, values float32 
    80397 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    80398 shown at level 0.000848, step 1, values float32 
    80399 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    80400 shown at level 0.000848, step 1, values float32 
    80401 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    80402 shown at level 0.000848, step 1, values float32 
    80403 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    80404 shown at level 0.000848, step 1, values float32 
    80405 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    80406 shown at level 0.000848, step 1, values float32 
    80407 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    80408 shown at level 0.000848, step 1, values float32 
    80409 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    80410 shown at level 0.000848, step 1, values float32 
    80411 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    80412 2.14, shown at level 0.000997, step 1, values float32 
    80413 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    80414 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80415 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    80416 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80417 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    80418 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80419 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    80420 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80421 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    80422 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80423 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    80424 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80425 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    80426 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80427 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    80428 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80429 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    80430 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80431 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    80432 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80433 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    80434 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80435 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    80436 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80437 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    80438 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80439 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    80440 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80441 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    80442 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80443 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    80444 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80445 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    80446 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80447 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    80448 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80449 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    80450 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80451 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    80452 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80453 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    80454 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80455 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    80456 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80457 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    80458 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80459 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    80460 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80461 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    80462 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80463 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    80464 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80465 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    80466 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80467 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    80468 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80469 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    80470 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80471 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    80472 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80473 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    80474 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80475 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    80476 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80477 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    80478 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80479 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    80480 shown at level 0.0112, step 1, values float32 
    80481 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    80482 2.14, shown at level 0.00974, step 1, values float32 
    80483 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    80484 level 0.157, step 1, values float32 
    80485 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    80486 0.0283, step 1, values float32 
    80487 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    80488 level 0.00404, step 1, values float32 
    80489 Opened PflAB_wout_FlgYoverlap_imasked as #18, grid size 200,200,200, pixel
    80490 2.14, shown at level 0.00045, step 1, values float32 
    80491 Opened PflC-only-Model-area.mrc as #19, grid size 200,200,200, pixel 2.14,
    80492 shown at level 0.00107, step 1, values float32 
    80493 Opened PflC-only-Model-area.mrc copy as #20, grid size 200,200,200, pixel
    80494 2.14, shown at level 0.00107, step 1, values float32 
    80495 Opened PflC-only-Model-area.mrc copy as #21, grid size 200,200,200, pixel
    80496 2.14, shown at level 0.00107, step 1, values float32 
    80497 Opened PflC-only-Model-area.mrc copy as #22, grid size 200,200,200, pixel
    80498 2.14, shown at level 0.00107, step 1, values float32 
    80499 Opened PflC-only-Model-area.mrc copy as #23, grid size 200,200,200, pixel
    80500 2.14, shown at level 0.00107, step 1, values float32 
    80501 Opened PflC-only-Model-area.mrc copy as #24, grid size 200,200,200, pixel
    80502 2.14, shown at level 0.00107, step 1, values float32 
    80503 Opened PflC-only-Model-area.mrc copy as #25, grid size 200,200,200, pixel
    80504 2.14, shown at level 0.00107, step 1, values float32 
    80505 Opened PflC-only-Model-area.mrc copy as #26, grid size 200,200,200, pixel
    80506 2.14, shown at level 0.00107, step 1, values float32 
    80507 Opened PflC-only-Model-area.mrc copy as #27, grid size 200,200,200, pixel
    80508 2.14, shown at level 0.00107, step 1, values float32 
    80509 Opened PflC-only-Model-area.mrc copy as #28, grid size 200,200,200, pixel
    80510 2.14, shown at level 0.00107, step 1, values float32 
    80511 Opened PflC-only-Model-area.mrc copy as #29, grid size 200,200,200, pixel
    80512 2.14, shown at level 0.00107, step 1, values float32 
    80513 Opened PflC-only-Model-area.mrc copy as #30, grid size 200,200,200, pixel
    80514 2.14, shown at level 0.00107, step 1, values float32 
    80515 Opened PflC-only-Model-area.mrc copy as #31, grid size 200,200,200, pixel
    80516 2.14, shown at level 0.00107, step 1, values float32 
    80517 Opened PflC-only-Model-area.mrc copy as #32, grid size 200,200,200, pixel
    80518 2.14, shown at level 0.00107, step 1, values float32 
    80519 Opened PflC-only-Model-area.mrc copy as #33, grid size 200,200,200, pixel
    80520 2.14, shown at level 0.00107, step 1, values float32 
    80521 Opened PflC-only-Model-area.mrc copy as #34, grid size 200,200,200, pixel
    80522 2.14, shown at level 0.00107, step 1, values float32 
    80523 Opened PflC-only-Model-area.mrc copy as #35, grid size 200,200,200, pixel
    80524 2.14, shown at level 0.00107, step 1, values float32 
    80525 Opened PflC-only-Model-area.mrc copy as #36, grid size 200,200,200, pixel
    80526 2.14, shown at level 0.00107, step 1, values float32 
    80527 Opened FlgV-ring.mrc as #37, grid size 200,200,120, pixel 4.3,4.3,4.3, shown
    80528 at level 0.0486, step 1, values float32 
    80529 Opened C-ring.mrc as #38, grid size 250,250,250, pixel 4.3, shown at level
    80530 0.0283, step 1, values float32 
    80531 opened ChimeraX session 
    80532 Showing C-Vrings.seg - 65 regions, 65 surfaces 
    80533 
    80534 > select add #43
    80535 
    80536 272320 atoms, 275760 bonds, 34560 residues, 254 models selected 
    80537 
    80538 > hide #!17 models
    80539 
    80540 > show #!43.21 models
    80541 
    80542 > show #!43.22 models
    80543 
    80544 > show #!43.23 models
    80545 
    80546 > show #!43.24 models
    80547 
    80548 > show #!43.25 models
    80549 
    80550 > show #!43.26 models
    80551 
    80552 > show #!43.27 models
    80553 
    80554 > show #!43.28 models
    80555 
    80556 > show #!43.29 models
    80557 
    80558 > show #!43.30 models
    80559 
    80560 > show #!43.32 models
    80561 
    80562 > show #!43.31 models
    80563 
    80564 > hide #!43.29 models
    80565 
    80566 > hide #!43.31 models
    80567 
    80568 > hide #!43.32 models
    80569 
    80570 > show #!43.31 models
    80571 
    80572 > show #!43.29 models
    80573 
    80574 > show #!43.32 models
    80575 
    80576 > hide sel surfaces
    80577 
    80578 > show sel cartoons
    80579 
    80580 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/C40-8uox.pdb
    80581 > selectedOnly true
    80582 
    80583 > color #88 #70887a5e models
    80584 
    80585 > color #88 #70887a73 models
    80586 
    80587 > close session
    80588 
    80589 > open /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    80590 > model_09282025.cxs
    80591 
    80592 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    80593 level 0.0137, step 1, values float32 
    80594 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    80595 step 1, values float32 
    80596 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    80597 level 0.0137, step 1, values float32 
    80598 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    80599 level 0.0137, step 1, values float32 
    80600 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    80601 level 0.027, step 1, values float32 
    80602 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    80603 step 1, values float32 
    80604 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    80605 level 0.0166, step 1, values float32 
    80606 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    80607 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80608 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    80609 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80610 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    80611 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80612 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    80613 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80614 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    80615 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80616 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    80617 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80618 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    80619 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80620 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    80621 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80622 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    80623 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80624 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    80625 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80626 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    80627 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80628 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    80629 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80630 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    80631 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80632 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    80633 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80634 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    80635 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80636 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    80637 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80638 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    80639 pixel 2.14, shown at level 0.000576, step 1, values float32 
    80640 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    80641 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80642 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    80643 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80644 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    80645 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80646 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    80647 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80648 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    80649 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80650 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    80651 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80652 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    80653 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80654 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    80655 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80656 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    80657 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80658 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    80659 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80660 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    80661 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80662 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    80663 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80664 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    80665 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80666 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    80667 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80668 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    80669 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80670 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    80671 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80672 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    80673 pixel 2.14, shown at level 0.000793, step 1, values float32 
    80674 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    80675 shown at level 0.000785, step 1, values float32 
    80676 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    80677 shown at level 0.000785, step 1, values float32 
    80678 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    80679 shown at level 0.000785, step 1, values float32 
    80680 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    80681 shown at level 0.000785, step 1, values float32 
    80682 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    80683 shown at level 0.000785, step 1, values float32 
    80684 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    80685 shown at level 0.000785, step 1, values float32 
    80686 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    80687 shown at level 0.000785, step 1, values float32 
    80688 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    80689 shown at level 0.000785, step 1, values float32 
    80690 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    80691 shown at level 0.000785, step 1, values float32 
    80692 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    80693 shown at level 0.000785, step 1, values float32 
    80694 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    80695 shown at level 0.000785, step 1, values float32 
    80696 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    80697 shown at level 0.000785, step 1, values float32 
    80698 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    80699 shown at level 0.000785, step 1, values float32 
    80700 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    80701 shown at level 0.000785, step 1, values float32 
    80702 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    80703 shown at level 0.000785, step 1, values float32 
    80704 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    80705 shown at level 0.000785, step 1, values float32 
    80706 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    80707 shown at level 0.000785, step 1, values float32 
    80708 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    80709 shown at level 0.00107, step 1, values float32 
    80710 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    80711 shown at level 0.00107, step 1, values float32 
    80712 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    80713 shown at level 0.00107, step 1, values float32 
    80714 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    80715 shown at level 0.00107, step 1, values float32 
    80716 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    80717 shown at level 0.00107, step 1, values float32 
    80718 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    80719 shown at level 0.00107, step 1, values float32 
    80720 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    80721 shown at level 0.00107, step 1, values float32 
    80722 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    80723 shown at level 0.00107, step 1, values float32 
    80724 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    80725 shown at level 0.00107, step 1, values float32 
    80726 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    80727 shown at level 0.00107, step 1, values float32 
    80728 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    80729 shown at level 0.00107, step 1, values float32 
    80730 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    80731 shown at level 0.00107, step 1, values float32 
    80732 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    80733 shown at level 0.00107, step 1, values float32 
    80734 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    80735 shown at level 0.00107, step 1, values float32 
    80736 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    80737 shown at level 0.00107, step 1, values float32 
    80738 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    80739 shown at level 0.00107, step 1, values float32 
    80740 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    80741 shown at level 0.00107, step 1, values float32 
    80742 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    80743 shown at level 0.000848, step 1, values float32 
    80744 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    80745 shown at level 0.000848, step 1, values float32 
    80746 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    80747 shown at level 0.000848, step 1, values float32 
    80748 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    80749 shown at level 0.000848, step 1, values float32 
    80750 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    80751 shown at level 0.000848, step 1, values float32 
    80752 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    80753 shown at level 0.000848, step 1, values float32 
    80754 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    80755 shown at level 0.000848, step 1, values float32 
    80756 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    80757 shown at level 0.000848, step 1, values float32 
    80758 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    80759 shown at level 0.000848, step 1, values float32 
    80760 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    80761 shown at level 0.000848, step 1, values float32 
    80762 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    80763 shown at level 0.000848, step 1, values float32 
    80764 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    80765 shown at level 0.000848, step 1, values float32 
    80766 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    80767 shown at level 0.000848, step 1, values float32 
    80768 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    80769 shown at level 0.000848, step 1, values float32 
    80770 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    80771 shown at level 0.000848, step 1, values float32 
    80772 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    80773 shown at level 0.000848, step 1, values float32 
    80774 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    80775 shown at level 0.000848, step 1, values float32 
    80776 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    80777 2.14, shown at level 0.000997, step 1, values float32 
    80778 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    80779 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80780 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    80781 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80782 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    80783 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80784 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    80785 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80786 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    80787 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80788 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    80789 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80790 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    80791 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80792 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    80793 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80794 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    80795 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80796 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    80797 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80798 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    80799 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80800 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    80801 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80802 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    80803 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80804 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    80805 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80806 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    80807 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80808 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    80809 pixel 2.14, shown at level 0.000997, step 1, values float32 
    80810 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    80811 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80812 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    80813 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80814 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    80815 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80816 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    80817 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80818 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    80819 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80820 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    80821 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80822 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    80823 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80824 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    80825 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80826 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    80827 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80828 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    80829 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80830 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    80831 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80832 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    80833 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80834 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    80835 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80836 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    80837 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80838 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    80839 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80840 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    80841 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80842 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    80843 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    80844 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    80845 shown at level 0.0112, step 1, values float32 
    80846 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    80847 2.14, shown at level 0.00974, step 1, values float32 
    80848 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    80849 level 0.157, step 1, values float32 
    80850 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    80851 0.0283, step 1, values float32 
    80852 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    80853 level 0.00404, step 1, values float32 
    80854 Opened 3xFlgY.mrc as #22, grid size 256,256,256, pixel 2.14, shown at level
    80855 0.0112, step 1, values float32 
    80856 Opened 1xPflB.mrc as #26, grid size 200,200,200, pixel 2.14, shown at level
    80857 0.00045, step 1, values float32 
    80858 Opened 1xFlgY.mrc as #29, grid size 256,256,256, pixel 2.14, shown at level
    80859 0.0112, step 1, values float32 
    80860 Opened 1xPflB.mrc as #30, grid size 200,200,200, pixel 2.14, shown at level
    80861 0.00045, step 1, values float32 
    80862 opened ChimeraX session 
    80863 Showing 3xFlgY.seg - 23 regions, 23 surfaces 
    80864 
    80865 > hide #!21 models
    80866 
    80867 > color #88 #70887a73 models
    80868 
    80869 > show #!88 models
    80870 
    80871 > show #!89 models
    80872 
    80873 > color #89 #70887a73 models
    80874 
    80875 > hide #!88 models
    80876 
    80877 > hide #!89 models
    80878 
    80879 > hide #!3 models
    80880 
    80881 > select add #25
    80882 
    80883 78642 atoms, 79390 bonds, 9775 residues, 18 models selected 
    80884 
    80885 > hide sel cartoons
    80886 
    80887 > show sel surfaces
    80888 
    80889 Alignment identifier is 1 
    80890 Alignment identifier is 2 
    80891 
    80892 > select #25.1/s:788 #25.2/s:788 #25.3/s:788 #25.4/s:788 #25.5/s:788
    80893 > #25.6/s:788 #25.7/s:788 #25.8/s:788 #25.9/s:788 #25.10/s:788 #25.11/s:788
    80894 > #25.12/s:788 #25.13/s:788 #25.14/s:788 #25.15/s:788 #25.16/s:788
    80895 > #25.17/s:788
    80896 
    80897 170 atoms, 153 bonds, 17 residues, 17 models selected 
    80898 
    80899 > select #25.1/s #25.2/s #25.3/s #25.4/s #25.5/s #25.6/s #25.7/s #25.8/s
    80900 > #25.9/s #25.10/s #25.11/s #25.12/s #25.13/s #25.14/s #25.15/s #25.16/s
    80901 > #25.17/s
    80902 
    80903 36652 atoms, 37196 bonds, 4505 residues, 17 models selected 
    80904 2 [ID: 2] region 17 chains [1-265] RMSD: 281.686 
    80905  
    80906 
    80907 > hide sel cartoons
    80908 
    80909 > hide sel surfaces
    80910 
    80911 > select clear
    80912 
    80913 > select add #33
    80914 
    80915 156621 atoms, 159783 bonds, 17 pseudobonds, 19091 residues, 35 models selected 
    80916 
    80917 > select add #34
    80918 
    80919 264724 atoms, 270045 bonds, 34 pseudobonds, 32130 residues, 70 models selected 
    80920 
    80921 > open /Users/shoichitachiyama/Desktop/Fig4-Final-models/C40-8uox.pdb
    80922 
    80923 Summary of feedback from opening /Users/shoichitachiyama/Desktop/Fig4-Final-
    80924 models/C40-8uox.pdb 
    80925 --- 
    80926 warnings | Start residue of secondary structure not found: HELIX 1 1 GLUBN 2 GLNBN 97 1 96 
    80927 Start residue of secondary structure not found: HELIX 2 2 ALABN 101 GLNBN 109
    80928 1 9 
    80929 Start residue of secondary structure not found: HELIX 3 3 ALABN 112 ILEBN 118
    80930 1 7 
    80931 Start residue of secondary structure not found: HELIX 4 4 METBN 119 SERBN 121
    80932 1 3 
    80933 Start residue of secondary structure not found: HELIX 5 5 SERBN 124 VALBN 130
    80934 1 7 
    80935 77395 messages similar to the above omitted 
    80936  
    80937 Chain information for C40-8uox.pdb 
    80938 --- 
    80939 Chain | Description 
    80940 35.1/B1 35.6/B1 35.11/B1 35.16/B1 35.21/B1 35.26/B1 35.31/B1 35.36/B1 35.41/B1 35.46/B1 35.51/B1 35.56/B1 35.61/B1 35.66/B1 35.71/B1 35.76/B1 35.81/B1 35.86/B1 35.91/B1 35.96/B1 35.101/B1 35.106/B1 35.111/B1 35.116/B1 35.121/B1 35.126/B1 35.131/B1 35.136/B1 35.141/B1 35.146/B1 35.151/B1 35.156/B1 35.161/B1 35.166/B1 35.171/B1 35.176/B1 35.181/B1 35.186/B1 35.191/B1 35.196/B1 | No description available 
    80941 35.2/C1 35.7/C1 35.12/C1 35.17/C1 35.22/C1 35.27/C1 35.32/C1 35.37/C1 35.42/C1 35.47/C1 35.52/C1 35.57/C1 35.62/C1 35.67/C1 35.72/C1 35.77/C1 35.82/C1 35.87/C1 35.92/C1 35.97/C1 35.102/C1 35.107/C1 35.112/C1 35.117/C1 35.122/C1 35.127/C1 35.132/C1 35.137/C1 35.142/C1 35.147/C1 35.152/C1 35.157/C1 35.162/C1 35.167/C1 35.172/C1 35.177/C1 35.182/C1 35.187/C1 35.192/C1 35.197/C1 | No description available 
    80942 35.3/D1 35.8/D1 35.13/D1 35.18/D1 35.23/D1 35.28/D1 35.33/D1 35.38/D1 35.43/D1 35.48/D1 35.53/D1 35.58/D1 35.63/D1 35.68/D1 35.73/D1 35.78/D1 35.83/D1 35.88/D1 35.93/D1 35.98/D1 35.103/D1 35.108/D1 35.113/D1 35.118/D1 35.123/D1 35.128/D1 35.133/D1 35.138/D1 35.143/D1 35.148/D1 35.153/D1 35.158/D1 35.163/D1 35.168/D1 35.173/D1 35.178/D1 35.183/D1 35.188/D1 35.193/D1 35.198/D1 35.4/E1 35.9/E1 35.14/E1 35.19/E1 35.24/E1 35.29/E1 35.34/E1 35.39/E1 35.44/E1 35.49/E1 35.54/E1 35.59/E1 35.64/E1 35.69/E1 35.74/E1 35.79/E1 35.84/E1 35.89/E1 35.94/E1 35.99/E1 35.104/E1 35.109/E1 35.114/E1 35.119/E1 35.124/E1 35.129/E1 35.134/E1 35.139/E1 35.144/E1 35.149/E1 35.154/E1 35.159/E1 35.164/E1 35.169/E1 35.174/E1 35.179/E1 35.184/E1 35.189/E1 35.194/E1 35.199/E1 | No description available 
    80943 35.5/F1 35.10/F1 35.15/F1 35.20/F1 35.25/F1 35.30/F1 35.35/F1 35.40/F1 35.45/F1 35.50/F1 35.55/F1 35.60/F1 35.65/F1 35.70/F1 35.75/F1 35.80/F1 35.85/F1 35.90/F1 35.95/F1 35.100/F1 35.105/F1 35.110/F1 35.115/F1 35.120/F1 35.125/F1 35.130/F1 35.135/F1 35.140/F1 35.145/F1 35.150/F1 35.155/F1 35.160/F1 35.165/F1 35.170/F1 35.175/F1 35.180/F1 35.185/F1 35.190/F1 35.195/F1 35.200/F1 | No description available 
    80944  
    80945 
    80946 > select subtract #33
    80947 
    80948 108103 atoms, 110262 bonds, 17 pseudobonds, 13039 residues, 35 models selected 
    80949 
    80950 > select subtract #34
    80951 
    80952 Nothing selected 
    80953 
    80954 > color #35 #797979ff models
    80955 
    80956 > select add #35
    80957 
    80958 272320 atoms, 275760 bonds, 34560 residues, 201 models selected 
    80959 
    80960 > hide sel cartoons
    80961 
    80962 > show sel surfaces
    80963 
    80964 > select clear
    80965 
    80966 > show #!158 models
    80967 
    80968 > hide #!15 models
    80969 
    80970 > hide #!25 models
    80971 
    80972 > hide #!33 models
    80973 
    80974 > show #!33 models
    80975 
    80976 > hide #!34 models
    80977 
    80978 > hide #!35 models
    80979 
    80980 The cached device pixel ratio value was stale on window expose. Please file a
    80981 QTBUG which explains how to reproduce. 
    80982 
    80983 Segmenting 1xPflC.mrc gaussian copy, density threshold 0.001074 
    80984 Showing 8 region surfaces 
    80985 65 watershed regions, grouped to 8 regions 
    80986 Showing 1xPflC gaussian copy.seg - 8 regions, 8 surfaces 
    80987 
    80988 > select add #21
    80989 
    80990 9 models selected 
    80991 
    80992 > ui mousemode right "translate selected models"
    80993 
    80994 > view matrix models #21,1,0,0,363.59,0,1,0,548.2,0,0,1,107.12
    80995 
    80996 > view matrix models #21,1,0,0,514.38,0,1,0,484.38,0,0,1,91.822
    80997 
    80998 > view matrix models #21,1,0,0,598.19,0,1,0,386.48,0,0,1,234.92
    80999 
    81000 > view matrix models #21,1,0,0,591.9,0,1,0,375.41,0,0,1,236.37
    81001 
    81002 > ui mousemode right "rotate selected models"
    81003 
    81004 > view matrix models
    81005 > #21,0.97931,-0.20218,0.0091558,634.4,0.20238,0.97862,-0.03661,350.94,-0.0015584,0.037705,0.99929,229.21
    81006 
    81007 > ui mousemode right "translate selected models"
    81008 
    81009 > view matrix models
    81010 > #21,0.97931,-0.20218,0.0091558,620.1,0.20238,0.97862,-0.03661,344.01,-0.0015584,0.037705,0.99929,232.02
    81011 
    81012 > hide #!158 models
    81013 
    81014 > select #21.1
    81015 
    81016 1 model selected 
    81017 
    81018 > select add #21.2
    81019 
    81020 2 models selected 
    81021 
    81022 > select #21.2
    81023 
    81024 1 model selected 
    81025 Ungrouped to 3 regions 
    81026 
    81027 > select #21.1
    81028 
    81029 1 model selected 
    81030 
    81031 > select add #21.10
    81032 
    81033 2 models selected 
    81034 
    81035 > select add #21.9
    81036 
    81037 3 models selected 
    81038 
    81039 > select add #33
    81040 
    81041 156621 atoms, 159783 bonds, 17 pseudobonds, 19091 residues, 38 models selected 
    81042 
    81043 > show sel surfaces
    81044 
    81045 Showing 10 region surfaces 
    81046 
    81047 > select clear
    81048 
    81049 > select #21.1
    81050 
    81051 1 model selected 
    81052 
    81053 > select add #21.10
    81054 
    81055 2 models selected 
    81056 
    81057 > select add #21.9
    81058 
    81059 3 models selected 
    81060 Grouped 3 regions 
    81061 
    81062 The cached device pixel ratio value was stale on window expose. Please file a
    81063 QTBUG which explains how to reproduce. 
    81064 
    81065 Opened 1xPflC_imasked as #36, grid size 200,200,200, pixel 2.14, shown at step
    81066 1, values float32 
    81067 
    81068 The cached device pixel ratio value was stale on window expose. Please file a
    81069 QTBUG which explains how to reproduce. 
    81070 
    81071 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/PflC-model-region.mrc
    81072 > models #36
    81073 
    81074 Opened 1xPflC_imasked as #37, grid size 200,200,200, pixel 2.14, shown at step
    81075 1, values float32 
    81076 
    81077 The cached device pixel ratio value was stale on window expose. Please file a
    81078 QTBUG which explains how to reproduce. 
    81079 
    81080 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/PflC-No-model.mrc
    81081 > models #37
    81082 
    81083 > hide #!21 models
    81084 
    81085 > hide #!36 models
    81086 
    81087 > show #!3 models
    81088 
    81089 > view orient
    81090 
    81091 > select add #21
    81092 
    81093 9 models selected 
    81094 
    81095 > select subtract #21
    81096 
    81097 Nothing selected 
    81098 
    81099 > turn z 21.176470588 models #37 center #3
    81100 
    81101 > volume copy #37
    81102 
    81103 Opened PflC-No-model.mrc copy as #38, grid size 200,200,200, pixel 2.14, shown
    81104 at step 1, values float32 
    81105 
    81106 > volume #37 show
    81107 
    81108 > turn z 21.176470588 models #37 center #3
    81109 
    81110 > volume copy #37
    81111 
    81112 Opened PflC-No-model.mrc copy as #39, grid size 200,200,200, pixel 2.14, shown
    81113 at step 1, values float32 
    81114 
    81115 > volume #37 show
    81116 
    81117 > turn z 21.176470588 models #37 center #3
    81118 
    81119 > volume copy #37
    81120 
    81121 Opened PflC-No-model.mrc copy as #40, grid size 200,200,200, pixel 2.14, shown
    81122 at step 1, values float32 
    81123 
    81124 > volume #37 show
    81125 
    81126 > turn z 21.176470588 models #37 center #3
    81127 
    81128 > volume copy #37
    81129 
    81130 Opened PflC-No-model.mrc copy as #41, grid size 200,200,200, pixel 2.14, shown
    81131 at step 1, values float32 
    81132 
    81133 > volume #37 show
    81134 
    81135 > turn z 21.176470588 models #37 center #3
    81136 
    81137 > volume copy #37
    81138 
    81139 Opened PflC-No-model.mrc copy as #42, grid size 200,200,200, pixel 2.14, shown
    81140 at step 1, values float32 
    81141 
    81142 > volume #37 show
    81143 
    81144 > turn z 21.176470588 models #37 center #3
    81145 
    81146 > volume copy #37
    81147 
    81148 Opened PflC-No-model.mrc copy as #43, grid size 200,200,200, pixel 2.14, shown
    81149 at step 1, values float32 
    81150 
    81151 > volume #37 show
    81152 
    81153 > turn z 21.176470588 models #37 center #3
    81154 
    81155 > volume copy #37
    81156 
    81157 Opened PflC-No-model.mrc copy as #44, grid size 200,200,200, pixel 2.14, shown
    81158 at step 1, values float32 
    81159 
    81160 > volume #37 show
    81161 
    81162 > turn z 21.176470588 models #37 center #3
    81163 
    81164 > volume copy #37
    81165 
    81166 Opened PflC-No-model.mrc copy as #45, grid size 200,200,200, pixel 2.14, shown
    81167 at step 1, values float32 
    81168 
    81169 > volume #37 show
    81170 
    81171 > turn z 21.176470588 models #37 center #3
    81172 
    81173 > volume copy #37
    81174 
    81175 Opened PflC-No-model.mrc copy as #46, grid size 200,200,200, pixel 2.14, shown
    81176 at step 1, values float32 
    81177 
    81178 > volume #37 show
    81179 
    81180 > turn z 21.176470588 models #37 center #3
    81181 
    81182 > volume copy #37
    81183 
    81184 Opened PflC-No-model.mrc copy as #47, grid size 200,200,200, pixel 2.14, shown
    81185 at step 1, values float32 
    81186 
    81187 > volume #37 show
    81188 
    81189 > turn z 21.176470588 models #37 center #3
    81190 
    81191 > volume copy #37
    81192 
    81193 Opened PflC-No-model.mrc copy as #48, grid size 200,200,200, pixel 2.14, shown
    81194 at step 1, values float32 
    81195 
    81196 > volume #37 show
    81197 
    81198 > turn z 21.176470588 models #37 center #3
    81199 
    81200 > volume copy #37
    81201 
    81202 Opened PflC-No-model.mrc copy as #49, grid size 200,200,200, pixel 2.14, shown
    81203 at step 1, values float32 
    81204 
    81205 > volume #37 show
    81206 
    81207 > turn z 21.176470588 models #37 center #3
    81208 
    81209 > volume copy #37
    81210 
    81211 Opened PflC-No-model.mrc copy as #50, grid size 200,200,200, pixel 2.14, shown
    81212 at step 1, values float32 
    81213 
    81214 > volume #37 show
    81215 
    81216 > turn z 21.176470588 models #37 center #3
    81217 
    81218 > volume copy #37
    81219 
    81220 Opened PflC-No-model.mrc copy as #51, grid size 200,200,200, pixel 2.14, shown
    81221 at step 1, values float32 
    81222 
    81223 > volume #37 show
    81224 
    81225 > turn z 21.176470588 models #37 center #3
    81226 
    81227 > volume copy #37
    81228 
    81229 Opened PflC-No-model.mrc copy as #52, grid size 200,200,200, pixel 2.14, shown
    81230 at step 1, values float32 
    81231 
    81232 > volume #37 show
    81233 
    81234 > turn z 21.176470588 models #37 center #3
    81235 
    81236 > volume copy #37
    81237 
    81238 Opened PflC-No-model.mrc copy as #53, grid size 200,200,200, pixel 2.14, shown
    81239 at step 1, values float32 
    81240 
    81241 > volume #37 show
    81242 
    81243 > turn z 21.176470588 models #37 center #3
    81244 
    81245 > volume copy #37
    81246 
    81247 Opened PflC-No-model.mrc copy as #54, grid size 200,200,200, pixel 2.14, shown
    81248 at step 1, values float32 
    81249 
    81250 > volume #37 show
    81251 
    81252 > hide #!37 models
    81253 
    81254 > hide #!37-54 models
    81255 
    81256 > show #!108 models
    81257 
    81258 > hide #!33 models
    81259 
    81260 > show #!34 models
    81261 
    81262 Segmenting Single_Cage_unit.mrc gaussian copy, density threshold 0.000576 
    81263 Showing 10 region surfaces 
    81264 64 watershed regions, grouped to 10 regions 
    81265 Showing Single_Cage_unit gaussian copy.seg - 10 regions, 10 surfaces 
    81266 
    81267 > select add #21
    81268 
    81269 11 models selected 
    81270 
    81271 > view matrix models #21,1,0,0,33.811,0,1,0,514.55,0,0,1,211.9
    81272 
    81273 > view matrix models #21,1,0,0,459.49,0,1,0,744.88,0,0,1,196.8
    81274 
    81275 > view matrix models #21,1,0,0,544.49,0,1,0,645.42,0,0,1,222.34
    81276 
    81277 > ui mousemode right "rotate selected models"
    81278 
    81279 > view matrix models
    81280 > #21,0.76809,-0.63471,-0.084728,732.84,0.63662,0.77116,-0.0056035,483.03,0.068896,-0.049636,0.99639,209.2
    81281 
    81282 > ui mousemode right "translate selected models"
    81283 
    81284 > view matrix models
    81285 > #21,0.76809,-0.63471,-0.084728,747.39,0.63662,0.77116,-0.0056035,359.6,0.068896,-0.049636,0.99639,198.23
    81286 
    81287 > ui mousemode right "rotate selected models"
    81288 
    81289 > view matrix models
    81290 > #21,0.88003,-0.46559,-0.093623,687.12,0.46828,0.88354,0.00786,392.37,0.07906,-0.050759,0.99558,195.35
    81291 
    81292 > ui mousemode right "translate selected models"
    81293 
    81294 > view matrix models
    81295 > #21,0.88003,-0.46559,-0.093623,694.44,0.46828,0.88354,0.00786,386.5,0.07906,-0.050759,0.99558,195.79
    81296 
    81297 > view matrix models
    81298 > #21,0.88003,-0.46559,-0.093623,696.98,0.46828,0.88354,0.00786,393.64,0.07906,-0.050759,0.99558,212.91
    81299 
    81300 > ui mousemode right "rotate selected models"
    81301 
    81302 > view matrix models
    81303 > #21,0.88777,-0.45345,-0.079052,689.87,0.45134,0.89128,-0.04385,407.52,0.090341,0.0032493,0.99591,200.76
    81304 
    81305 > ui mousemode right "translate selected models"
    81306 
    81307 > view matrix models
    81308 > #21,0.88777,-0.45345,-0.079052,688.82,0.45134,0.89128,-0.04385,410.81,0.090341,0.0032493,0.99591,200.26
    81309 
    81310 > view matrix models
    81311 > #21,0.88777,-0.45345,-0.079052,684.28,0.45134,0.89128,-0.04385,407.72,0.090341,0.0032493,0.99591,201.66
    81312 
    81313 > ui mousemode right "rotate selected models"
    81314 
    81315 > view matrix models
    81316 > #21,0.87126,-0.48571,-0.070674,693.07,0.48293,0.87403,-0.053338,402.3,0.087678,0.012341,0.99607,201.02
    81317 
    81318 > ui mousemode right "translate selected models"
    81319 
    81320 > view matrix models
    81321 > #21,0.87126,-0.48571,-0.070674,689.04,0.48293,0.87403,-0.053338,401.16,0.087678,0.012341,0.99607,201.97
    81322 
    81323 > ui mousemode right "rotate selected models"
    81324 
    81325 > view matrix models
    81326 > #21,0.81363,-0.57987,-0.041948,716.95,0.57729,0.81434,-0.059926,382.17,0.068909,0.024541,0.99732,205.71
    81327 
    81328 > ui mousemode right "translate selected models"
    81329 
    81330 > view matrix models
    81331 > #21,0.81363,-0.57987,-0.041948,714.36,0.57729,0.81434,-0.059926,383.18,0.068909,0.024541,0.99732,205.51
    81332 
    81333 > hide #!108 models
    81334 
    81335 > select #21.6
    81336 
    81337 1 model selected 
    81338 Ungrouped to 3 regions 
    81339 Ungrouped to 0 regions 
    81340 Ungrouped to 7 regions 
    81341 
    81342 > select #21.16
    81343 
    81344 1 model selected 
    81345 
    81346 > select add #21.17
    81347 
    81348 2 models selected 
    81349 Grouped 2 regions 
    81350 
    81351 > select #21.12
    81352 
    81353 1 model selected 
    81354 
    81355 > select add #21.13
    81356 
    81357 2 models selected 
    81358 Showing 15 region surfaces 
    81359 
    81360 > select #21.1
    81361 
    81362 1 model selected 
    81363 Opened Single_Cage_unit_imasked as #55, grid size 200,200,200, pixel 2.14,
    81364 shown at step 1, values float32 
    81365 
    81366 The cached device pixel ratio value was stale on window expose. Please file a
    81367 QTBUG which explains how to reproduce. 
    81368 
    81369 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Bridge.mrc models #55
    81370 
    81371 > hide #!21 models
    81372 
    81373 > select add #21
    81374 
    81375 16 models selected 
    81376 
    81377 > select subtract #21
    81378 
    81379 Nothing selected 
    81380 
    81381 > select add #21
    81382 
    81383 16 models selected 
    81384 
    81385 > select subtract #21
    81386 
    81387 Nothing selected 
    81388 
    81389 > view orient
    81390 
    81391 > turn z 21.176470588 models #55 center #3
    81392 
    81393 > volume copy #55
    81394 
    81395 Opened Single_Cage_unit_imasked copy as #56, grid size 200,200,200, pixel
    81396 2.14, shown at step 1, values float32 
    81397 
    81398 > volume #55 show
    81399 
    81400 > turn z 21.176470588 models #55 center #3
    81401 
    81402 > volume copy #55
    81403 
    81404 Opened Single_Cage_unit_imasked copy as #57, grid size 200,200,200, pixel
    81405 2.14, shown at step 1, values float32 
    81406 
    81407 > volume #55 show
    81408 
    81409 > turn z 21.176470588 models #55 center #3
    81410 
    81411 > volume copy #55
    81412 
    81413 Opened Single_Cage_unit_imasked copy as #58, grid size 200,200,200, pixel
    81414 2.14, shown at step 1, values float32 
    81415 
    81416 > volume #55 show
    81417 
    81418 > turn z 21.176470588 models #55 center #3
    81419 
    81420 > volume copy #55
    81421 
    81422 Opened Single_Cage_unit_imasked copy as #59, grid size 200,200,200, pixel
    81423 2.14, shown at step 1, values float32 
    81424 
    81425 > volume #55 show
    81426 
    81427 > turn z 21.176470588 models #55 center #3
    81428 
    81429 > volume copy #55
    81430 
    81431 Opened Single_Cage_unit_imasked copy as #60, grid size 200,200,200, pixel
    81432 2.14, shown at step 1, values float32 
    81433 
    81434 > volume #55 show
    81435 
    81436 > turn z 21.176470588 models #55 center #3
    81437 
    81438 > volume copy #55
    81439 
    81440 Opened Single_Cage_unit_imasked copy as #61, grid size 200,200,200, pixel
    81441 2.14, shown at step 1, values float32 
    81442 
    81443 > volume #55 show
    81444 
    81445 > turn z 21.176470588 models #55 center #3
    81446 
    81447 > volume copy #55
    81448 
    81449 Opened Single_Cage_unit_imasked copy as #62, grid size 200,200,200, pixel
    81450 2.14, shown at step 1, values float32 
    81451 
    81452 > volume #55 show
    81453 
    81454 > turn z 21.176470588 models #55 center #3
    81455 
    81456 > volume copy #55
    81457 
    81458 Opened Single_Cage_unit_imasked copy as #63, grid size 200,200,200, pixel
    81459 2.14, shown at step 1, values float32 
    81460 
    81461 > volume #55 show
    81462 
    81463 > turn z 21.176470588 models #55 center #3
    81464 
    81465 > volume copy #55
    81466 
    81467 Opened Single_Cage_unit_imasked copy as #64, grid size 200,200,200, pixel
    81468 2.14, shown at step 1, values float32 
    81469 
    81470 > volume #55 show
    81471 
    81472 > turn z 21.176470588 models #55 center #3
    81473 
    81474 > volume copy #55
    81475 
    81476 Opened Single_Cage_unit_imasked copy as #65, grid size 200,200,200, pixel
    81477 2.14, shown at step 1, values float32 
    81478 
    81479 > volume #55 show
    81480 
    81481 > turn z 21.176470588 models #55 center #3
    81482 
    81483 > volume copy #55
    81484 
    81485 Opened Single_Cage_unit_imasked copy as #66, grid size 200,200,200, pixel
    81486 2.14, shown at step 1, values float32 
    81487 
    81488 > volume #55 show
    81489 
    81490 > turn z 21.176470588 models #55 center #3
    81491 
    81492 > volume copy #55
    81493 
    81494 Opened Single_Cage_unit_imasked copy as #67, grid size 200,200,200, pixel
    81495 2.14, shown at step 1, values float32 
    81496 
    81497 > volume #55 show
    81498 
    81499 > turn z 21.176470588 models #55 center #3
    81500 
    81501 > volume copy #55
    81502 
    81503 Opened Single_Cage_unit_imasked copy as #68, grid size 200,200,200, pixel
    81504 2.14, shown at step 1, values float32 
    81505 
    81506 > volume #55 show
    81507 
    81508 > turn z 21.176470588 models #55 center #3
    81509 
    81510 > volume copy #55
    81511 
    81512 Opened Single_Cage_unit_imasked copy as #69, grid size 200,200,200, pixel
    81513 2.14, shown at step 1, values float32 
    81514 
    81515 > volume #55 show
    81516 
    81517 > turn z 21.176470588 models #55 center #3
    81518 
    81519 > volume copy #55
    81520 
    81521 Opened Single_Cage_unit_imasked copy as #70, grid size 200,200,200, pixel
    81522 2.14, shown at step 1, values float32 
    81523 
    81524 > volume #55 show
    81525 
    81526 > turn z 21.176470588 models #55 center #3
    81527 
    81528 > volume copy #55
    81529 
    81530 Opened Single_Cage_unit_imasked copy as #71, grid size 200,200,200, pixel
    81531 2.14, shown at step 1, values float32 
    81532 
    81533 > volume #55 show
    81534 
    81535 > turn z 21.176470588 models #55 center #3
    81536 
    81537 > volume copy #55
    81538 
    81539 Opened Single_Cage_unit_imasked copy as #72, grid size 200,200,200, pixel
    81540 2.14, shown at step 1, values float32 
    81541 
    81542 > volume #55 show
    81543 
    81544 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    81545 > model_09282025.cxs includeMaps true
    81546 
    81547 > show #!13 models
    81548 
    81549 > show #13.1 models
    81550 
    81551 > show #13.2 models
    81552 
    81553 > show #13.3 models
    81554 
    81555 > show #13.5 models
    81556 
    81557 > show #13.4 models
    81558 
    81559 > show #13.6 models
    81560 
    81561 > show #13.7 models
    81562 
    81563 > show #13.8 models
    81564 
    81565 > show #13.9 models
    81566 
    81567 > show #13.10 models
    81568 
    81569 > show #13.11 models
    81570 
    81571 > show #13.12 models
    81572 
    81573 > show #13.13 models
    81574 
    81575 > show #13.14 models
    81576 
    81577 > show #13.15 models
    81578 
    81579 > show #13.16 models
    81580 
    81581 > show #13.17 models
    81582 
    81583 > select add #13
    81584 
    81585 381633 atoms, 388042 bonds, 48671 residues, 18 models selected 
    81586 Alignment identifier is 1 
    81587 Alignment identifier is 2 
    81588 Alignment identifier is 3 
    81589 Alignment identifier is 4 
    81590 
    81591 > select #13.1/L:260 #13.2/L:260 #13.3/L:260 #13.4/L:260 #13.5/L:260
    81592 > #13.6/L:260 #13.7/L:260 #13.8/L:260 #13.9/L:260 #13.10/L:260 #13.11/L:260
    81593 > #13.12/L:260 #13.13/L:260 #13.14/L:260 #13.15/L:260 #13.16/L:260
    81594 > #13.17/L:260
    81595 
    81596 153 atoms, 136 bonds, 17 residues, 17 models selected 
    81597 
    81598 > select #13.1/L #13.2/L #13.3/L #13.4/L #13.5/L #13.6/L #13.7/L #13.8/L
    81599 > #13.9/L #13.10/L #13.11/L #13.12/L #13.13/L #13.14/L #13.15/L #13.16/L
    81600 > #13.17/L
    81601 
    81602 34918 atoms, 35547 bonds, 4420 residues, 17 models selected 
    81603 2 [ID: 2] region 17 chains [1-260] RMSD: 431.797 
    81604  
    81605 
    81606 > color sel #FFBF1D models
    81607 
    81608 > color sel #714B0E models
    81609 
    81610 > color sel #FFFF00 models
    81611 
    81612 > select #13.1/L:258-260 #13.2/L:258-260 #13.3/L:258-260 #13.4/L:258-260
    81613 > #13.5/L:258-260 #13.6/L:258-260 #13.7/L:258-260 #13.8/L:258-260
    81614 > #13.9/L:258-260 #13.10/L:258-260 #13.11/L:258-260 #13.12/L:258-260
    81615 > #13.13/L:258-260 #13.14/L:258-260 #13.15/L:258-260 #13.16/L:258-260
    81616 > #13.17/L:258-260
    81617 
    81618 442 atoms, 425 bonds, 51 residues, 17 models selected 
    81619 
    81620 > select #13.1/L #13.2/L #13.3/L #13.4/L #13.5/L #13.6/L #13.7/L #13.8/L
    81621 > #13.9/L #13.10/L #13.11/L #13.12/L #13.13/L #13.14/L #13.15/L #13.16/L
    81622 > #13.17/L
    81623 
    81624 34918 atoms, 35547 bonds, 4420 residues, 17 models selected 
    81625 2 [ID: 2] region 17 chains [1-260] RMSD: 431.797 
    81626  
    81627 
    81628 > color sel #ffbf1dff
    81629 
    81630 > select #13.1/K:260 #13.2/K:260 #13.3/K:260 #13.4/K:260 #13.5/K:260
    81631 > #13.6/K:260 #13.7/K:260 #13.8/K:260 #13.9/K:260 #13.10/K:260 #13.11/K:260
    81632 > #13.12/K:260 #13.13/K:260 #13.14/K:260 #13.15/K:260 #13.16/K:260
    81633 > #13.17/K:260
    81634 
    81635 153 atoms, 136 bonds, 17 residues, 17 models selected 
    81636 
    81637 > select #13.1/K #13.2/K #13.3/K #13.4/K #13.5/K #13.6/K #13.7/K #13.8/K
    81638 > #13.9/K #13.10/K #13.11/K #13.12/K #13.13/K #13.14/K #13.15/K #13.16/K
    81639 > #13.17/K
    81640 
    81641 34765 atoms, 35360 bonds, 4386 residues, 17 models selected 
    81642 1 [ID: 1] region 17 chains [1-258] RMSD: 451.995 
    81643  
    81644 
    81645 > color sel #adffc1ff
    81646 
    81647 > color sel #ffbf1dff
    81648 
    81649 > select #13.1/A-E:211-255 #13.2/A-E:211-255 #13.3/A-E:211-255
    81650 > #13.4/A-E:211-255 #13.5/A-E:211-255 #13.6/A-E:211-255 #13.7/A-E:211-255
    81651 > #13.8/A-E:211-255 #13.9/A-E:211-255 #13.10/A-E:211-255 #13.11/A-E:211-255
    81652 > #13.12/A-E:211-255 #13.13/A-E:211-255 #13.14/A-E:211-255 #13.15/A-E:211-255
    81653 > #13.16/A-E:211-255 #13.17/A-E:211-255
    81654 
    81655 30005 atoms, 30430 bonds, 3825 residues, 17 models selected 
    81656 
    81657 > select #13.1/A-E #13.2/A-E #13.3/A-E #13.4/A-E #13.5/A-E #13.6/A-E #13.7/A-E
    81658 > #13.8/A-E #13.9/A-E #13.10/A-E #13.11/A-E #13.12/A-E #13.13/A-E #13.14/A-E
    81659 > #13.15/A-E #13.16/A-E #13.17/A-E
    81660 
    81661 166090 atoms, 169065 bonds, 21675 residues, 17 models selected 
    81662 3 [ID: 3] region 85 chains [1-255] RMSD: 430.751 
    81663  
    81664 
    81665 > select #13.1/M-Q,F-J:178 #13.2/M-Q,F-J:178 #13.3/M-Q,F-J:178
    81666 > #13.4/M-Q,F-J:178 #13.5/M-Q,F-J:178 #13.6/M-Q,F-J:178 #13.7/M-Q,F-J:178
    81667 > #13.8/M-Q,F-J:178 #13.9/M-Q,F-J:178 #13.10/M-Q,F-J:178 #13.11/M-Q,F-J:178
    81668 > #13.12/M-Q,F-J:178 #13.13/M-Q,F-J:178 #13.14/M-Q,F-J:178 #13.15/M-Q,F-J:178
    81669 > #13.16/M-Q,F-J:178 #13.17/M-Q,F-J:178
    81670 
    81671 1190 atoms, 1020 bonds, 170 residues, 17 models selected 
    81672 
    81673 > select #13.1/M-Q,F-J #13.2/M-Q,F-J #13.3/M-Q,F-J #13.4/M-Q,F-J #13.5/M-Q,F-J
    81674 > #13.6/M-Q,F-J #13.7/M-Q,F-J #13.8/M-Q,F-J #13.9/M-Q,F-J #13.10/M-Q,F-J
    81675 > #13.11/M-Q,F-J #13.12/M-Q,F-J #13.13/M-Q,F-J #13.14/M-Q,F-J #13.15/M-Q,F-J
    81676 > #13.16/M-Q,F-J #13.17/M-Q,F-J
    81677 
    81678 145860 atoms, 148070 bonds, 18190 residues, 17 models selected 
    81679 4 [ID: 4] region 170 chains [1-107] RMSD: 421.050 
    81680  
    81681 
    81682 > color sel #714b0eff
    81683 
    81684 > select clear
    81685 
    81686 > view P1
    81687 
    81688 > show #!89 models
    81689 
    81690 > view P2
    81691 
    81692 > view P3
    81693 
    81694 Expected an objects specifier or a view name or a keyword 
    81695 
    81696 > view orient
    81697 
    81698 > turn x 90
    81699 
    81700 > turn y 90
    81701 
    81702 > turn x 15
    81703 
    81704 > turn x -15
    81705 
    81706 > turn x 10
    81707 
    81708 > select add #34
    81709 
    81710 108103 atoms, 110262 bonds, 17 pseudobonds, 13039 residues, 35 models selected 
    81711 
    81712 > hide sel cartoons
    81713 
    81714 > show sel surfaces
    81715 
    81716 > show #!88 models
    81717 
    81718 > show #!209 models
    81719 
    81720 > turn x -10
    81721 
    81722 > turn x 5
    81723 
    81724 > select clear
    81725 
    81726 > show #!12 models
    81727 
    81728 > hide #!12 models
    81729 
    81730 > show #!15 models
    81731 
    81732 > show #!25 models
    81733 
    81734 > show #!33 models
    81735 
    81736 > show #!35 models
    81737 
    81738 > select add #35
    81739 
    81740 272320 atoms, 275760 bonds, 34560 residues, 201 models selected 
    81741 
    81742 > select subtract #35
    81743 
    81744 200 models selected 
    81745 
    81746 > select add #13
    81747 
    81748 381633 atoms, 388042 bonds, 48671 residues, 18 models selected 
    81749 
    81750 > hide sel cartoons
    81751 
    81752 > show sel surfaces
    81753 
    81754 > select subtract #13
    81755 
    81756 289 models selected 
    81757 
    81758 > show #!36 models
    81759 
    81760 > hide #!36 models
    81761 
    81762 > show #!37 models
    81763 
    81764 > show #!54 models
    81765 
    81766 > view name P3
    81767 
    81768 > hide #!37 models
    81769 
    81770 > show #!37 models
    81771 
    81772 > hide #!37 models
    81773 
    81774 > show #!36 models
    81775 
    81776 > hide #!36 models
    81777 
    81778 > show #!37 models
    81779 
    81780 > hide #!54 models
    81781 
    81782 > hide #!37 models
    81783 
    81784 > show #!54 models
    81785 
    81786 > close #54
    81787 
    81788 > show #!37 models
    81789 
    81790 > show #!53 models
    81791 
    81792 > view P3
    81793 
    81794 > show #!37-53 models
    81795 
    81796 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    81797 > model_09282025.cxs includeMaps true
    81798 
    81799 > save /Users/shoichitachiyama/Desktop/Fig4A.png supersample 2
    81800 > transparentBackground true
    81801 
    81802 > hide #!88 models
    81803 
    81804 > hide #!89 models
    81805 
    81806 > hide #!209 models
    81807 
    81808 > turnx 40
    81809 
    81810 Unknown command: turnx 40 
    81811 
    81812 > turn x 40
    81813 
    81814 > hide #!37 models
    81815 
    81816 > hide #!37-53 models
    81817 
    81818 > hide #!34.17 models
    81819 
    81820 > show #!34.17 models
    81821 
    81822 > hide #!34.17 models
    81823 
    81824 > hide #!34.16 models
    81825 
    81826 > hide #!34.1 models
    81827 
    81828 > hide #!34.2 models
    81829 
    81830 > hide #!34.3 models
    81831 
    81832 > hide #!33.16 models
    81833 
    81834 > hide #!33.17 models
    81835 
    81836 > hide #!3 models
    81837 
    81838 > show #!232 models
    81839 
    81840 > hide #!232 models
    81841 
    81842 > show #16 models
    81843 
    81844 > show #!37 models
    81845 
    81846 > show #!37-53 models
    81847 
    81848 > show #!34.16 models
    81849 
    81850 > show #!34.17 models
    81851 
    81852 > show #!34.1 models
    81853 
    81854 > show #!34.2 models
    81855 
    81856 > show #!34.3 models
    81857 
    81858 > show #!33.16 models
    81859 
    81860 > show #!33.17 models
    81861 
    81862 > show #!3 models
    81863 
    81864 > show #!88 models
    81865 
    81866 > show #!89 models
    81867 
    81868 > show #!209 models
    81869 
    81870 > view P3
    81871 
    81872 > save /Users/shoichitachiyama/Desktop/Fig4A.png supersample 2
    81873 > transparentBackground true
    81874 
    81875 > view name P3
    81876 
    81877 > save /Users/shoichitachiyama/Desktop/Fig4A.png supersample 2
    81878 > transparentBackground true
    81879 
    81880 > turn x 40
    81881 
    81882 > hide #!209 models
    81883 
    81884 > hide #!88 models
    81885 
    81886 > hide #!89 models
    81887 
    81888 > hide #!37 models
    81889 
    81890 > show #!37 models
    81891 
    81892 > hide #!46 models
    81893 
    81894 > hide #!45 models
    81895 
    81896 > hide #!44 models
    81897 
    81898 > hide #!43 models
    81899 
    81900 > hide #!42 models
    81901 
    81902 > hide #!37-53 models
    81903 
    81904 > hide #!3 models
    81905 
    81906 > hide #!33.16 models
    81907 
    81908 > hide #!33.17 models
    81909 
    81910 > hide #!34.16 models
    81911 
    81912 > hide #!34.17 models
    81913 
    81914 > hide #!34.1 models
    81915 
    81916 > hide #!34.2 models
    81917 
    81918 > hide #!34.3 models
    81919 
    81920 > hide #!33.1 models
    81921 
    81922 > hide #!33.2 models
    81923 
    81924 > hide #!33.3 models
    81925 
    81926 > hide #!33.4 models
    81927 
    81928 > hide #!34.4 models
    81929 
    81930 > hide #!34.5 models
    81931 
    81932 > hide #!57 models
    81933 
    81934 > show #!57 models
    81935 
    81936 > hide #!65 models
    81937 
    81938 > hide #!64 models
    81939 
    81940 > hide #!63 models
    81941 
    81942 > hide #!62 models
    81943 
    81944 > hide #!61 models
    81945 
    81946 > hide #!60 models
    81947 
    81948 > hide #!33.5 models
    81949 
    81950 > show #!33.5 models
    81951 
    81952 > hide #!33.15 models
    81953 
    81954 > show #!33.4 models
    81955 
    81956 > show #!33.15 models
    81957 
    81958 > show #!34.16 models
    81959 
    81960 > hide #!34.16 models
    81961 
    81962 > show #!34.5 models
    81963 
    81964 > show #!34.16 models
    81965 
    81966 > save /Users/shoichitachiyama/Desktop/Fig4B.png supersample 2
    81967 > transparentBackground true
    81968 
    81969 > turn x 45
    81970 
    81971 > show #!34.1 models
    81972 
    81973 > show #!34.2 models
    81974 
    81975 > show #!34.3 models
    81976 
    81977 > show #!34.4 models
    81978 
    81979 > show #!33.1 models
    81980 
    81981 > show #!33.2 models
    81982 
    81983 > show #!33.3 models
    81984 
    81985 > show #!33.16 models
    81986 
    81987 > show #!33.17 models
    81988 
    81989 > show #!3 models
    81990 
    81991 > ui tool show "Side View"
    81992 
    81993 > turn x -45
    81994 
    81995 > select add #3
    81996 
    81997 3 models selected 
    81998 
    81999 > volume sel showOutlineBox true
    82000 
    82001 > ui mousemode right "tape measure"
    82002 
    82003 > ui mousemode right "crop volume"
    82004 
    82005 > volume #3 region 0,0,0,249,249,135
    82006 
    82007 > turn x 90
    82008 
    82009 > volume sel showOutlineBox false
    82010 
    82011 > turn x -45
    82012 
    82013 > volume sel showOutlineBox true
    82014 
    82015 > volume #59 region 0,0,0,199,190,199
    82016 
    82017 > volume #59 region 0,0,0,199,181,199
    82018 
    82019 > volume #58 region 0,0,0,199,180,199
    82020 
    82021 > hide #!59 models
    82022 
    82023 > show #!59 models
    82024 
    82025 > volume #3 region 0,0,100,249,249,135
    82026 
    82027 > volume #3 region 0,0,-100,249,249,135
    82028 
    82029 > volume #3 region 0,0,0,249,249,100
    82030 
    82031 > view P3
    82032 
    82033 > turn x 40
    82034 
    82035 > turn x 45
    82036 
    82037 > volume #3 region 0,0,0,249,249,120
    82038 
    82039 > volume #3 region 0,0,0,249,249,125
    82040 
    82041 > volume #3 region 0,0,0,249,249,122
    82042 
    82043 > volume sel showOutlineBox false
    82044 
    82045 > select add #3
    82046 
    82047 2 models selected 
    82048 
    82049 > select subtract #3
    82050 
    82051 Nothing selected 
    82052 
    82053 > save /Users/shoichitachiyama/Desktop/Fig4C.png supersample 2
    82054 > transparentBackground true
    82055 
    82056 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    82057 > model_09282025.cxs includeMaps true
    82058 
    82059 > show #!4 models
    82060 
    82061 > ui tool show "Segment Map"
    82062 
    82063 Segmenting C-Vrings.mrc, density threshold 0.028318 
    82064 Showing 65 region surfaces 
    82065 241 watershed regions, grouped to 65 regions 
    82066 Showing C-Vrings.seg - 65 regions, 65 surfaces 
    82067 
    82068 > turn x 90
    82069 
    82070 > select #21.44
    82071 
    82072 1 model selected 
    82073 
    82074 > select add #21.41
    82075 
    82076 2 models selected 
    82077 
    82078 > select add #21.42
    82079 
    82080 3 models selected 
    82081 
    82082 > select add #21.43
    82083 
    82084 4 models selected 
    82085 
    82086 > select add #21.60
    82087 
    82088 5 models selected 
    82089 
    82090 > select add #21.39
    82091 
    82092 6 models selected 
    82093 
    82094 > select add #21.40
    82095 
    82096 7 models selected 
    82097 
    82098 > select add #21.55
    82099 
    82100 8 models selected 
    82101 
    82102 > select add #21.59
    82103 
    82104 9 models selected 
    82105 
    82106 > select add #21.30
    82107 
    82108 10 models selected 
    82109 
    82110 > select add #21.51
    82111 
    82112 11 models selected 
    82113 
    82114 > select add #21.45
    82115 
    82116 12 models selected 
    82117 
    82118 > select add #21.58
    82119 
    82120 13 models selected 
    82121 
    82122 > select add #21.50
    82123 
    82124 14 models selected 
    82125 
    82126 > select add #21.48
    82127 
    82128 15 models selected 
    82129 
    82130 > select add #21.38
    82131 
    82132 16 models selected 
    82133 
    82134 > select add #21.56
    82135 
    82136 17 models selected 
    82137 Opened C-Vrings_imasked as #54, grid size 250,250,250, pixel 4.3, shown at
    82138 step 1, values float32 
    82139 
    82140 The cached device pixel ratio value was stale on window expose. Please file a
    82141 QTBUG which explains how to reproduce. 
    82142 
    82143 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/V-ring.mrc models #54
    82144 
    82145 > hide #!3 models
    82146 
    82147 > hide #!21 models
    82148 
    82149 > select add #21
    82150 
    82151 66 models selected 
    82152 
    82153 > show #!3 models
    82154 
    82155 > hide #!4 models
    82156 
    82157 > select subtract #21
    82158 
    82159 Nothing selected 
    82160 
    82161 > turn x 90
    82162 
    82163 > save /Users/shoichitachiyama/Desktop/Fig4C.png supersample 2
    82164 > transparentBackground true
    82165 
    82166 > set bgColor white
    82167 
    82168 > turn x 90
    82169 
    82170 > surface dust #3 size 43
    82171 
    82172 > surface dust #55 size 21.4
    82173 
    82174 > surface dust #56 size 21.4
    82175 
    82176 > surface dust #57 size 21.4
    82177 
    82178 > surface dust #58 size 21.4
    82179 
    82180 > surface dust #59 size 21.4
    82181 
    82182 > surface dust #66 size 21.4
    82183 
    82184 > surface dust #67 size 21.4
    82185 
    82186 > surface dust #68 size 21.4
    82187 
    82188 > surface dust #69 size 21.4
    82189 
    82190 > surface dust #70 size 21.4
    82191 
    82192 > surface dust #71 size 21.4
    82193 
    82194 > surface dust #72 size 21.4
    82195 
    82196 > surface dust #54 size 43
    82197 
    82198 > turn x 90
    82199 
    82200 > view P3
    82201 
    82202 > turn x 40
    82203 
    82204 > turn x 45
    82205 
    82206 > turn x -45
    82207 
    82208 > hide #!33.1 models
    82209 
    82210 > hide #!33.2 models
    82211 
    82212 > hide #!33.17 models
    82213 
    82214 > hide #!33.16 models
    82215 
    82216 > hide #!33.15 models
    82217 
    82218 > hide #!34.2 models
    82219 
    82220 > hide #!34.3 models
    82221 
    82222 > hide #!34.1 models
    82223 
    82224 > hide #!34.16 models
    82225 
    82226 > hide #!34.15 models
    82227 
    82228 > hide #!34.14 models
    82229 
    82230 > show #!34.14 models
    82231 
    82232 > show #!34.15 models
    82233 
    82234 > hide #!33.3 models
    82235 
    82236 > show #!33.15 models
    82237 
    82238 > show #!34.16 models
    82239 
    82240 > set bgColor black
    82241 
    82242 > hide #!34.16 models
    82243 
    82244 > show #!34.16 models
    82245 
    82246 > hide #!34.4 models
    82247 
    82248 > surface dust #3 size 43
    82249 
    82250 > surface dust #55 size 21.4
    82251 
    82252 > surface dust #56 size 21.4
    82253 
    82254 > surface dust #57 size 21.4
    82255 
    82256 > surface dust #58 size 21.4
    82257 
    82258 > surface dust #59 size 21.4
    82259 
    82260 > surface dust #66 size 21.4
    82261 
    82262 > surface dust #67 size 21.4
    82263 
    82264 > surface dust #68 size 21.4
    82265 
    82266 > surface dust #69 size 21.4
    82267 
    82268 > surface dust #70 size 21.4
    82269 
    82270 > surface dust #71 size 21.4
    82271 
    82272 > surface dust #72 size 21.4
    82273 
    82274 > surface dust #54 size 43
    82275 
    82276 > save /Users/shoichitachiyama/Desktop/Fig4B.png supersample 2
    82277 > transparentBackground true
    82278 
    82279 > turn x 45
    82280 
    82281 > show #!33.1 models
    82282 
    82283 > show #!33.2 models
    82284 
    82285 > show #!33.3 models
    82286 
    82287 > show #!34.1 models
    82288 
    82289 > show #!34.2 models
    82290 
    82291 > show #!34.3 models
    82292 
    82293 > show #!34.4 models
    82294 
    82295 > show #!33.16 models
    82296 
    82297 > show #!33.17 models
    82298 
    82299 > show #!34.17 models
    82300 
    82301 > show #!60 models
    82302 
    82303 > show #!61 models
    82304 
    82305 > show #!62 models
    82306 
    82307 > show #!63 models
    82308 
    82309 > show #!64 models
    82310 
    82311 > show #!65 models
    82312 
    82313 > color #64 #73e0ffff models
    82314 
    82315 > color #64 #5a97ffff models
    82316 
    82317 > surface dust #3 size 43
    82318 
    82319 > surface dust #55 size 21.4
    82320 
    82321 > surface dust #56 size 21.4
    82322 
    82323 > surface dust #57 size 21.4
    82324 
    82325 > surface dust #58 size 21.4
    82326 
    82327 > surface dust #59 size 21.4
    82328 
    82329 > surface dust #60 size 21.4
    82330 
    82331 > surface dust #61 size 21.4
    82332 
    82333 > surface dust #62 size 21.4
    82334 
    82335 > surface dust #63 size 21.4
    82336 
    82337 > surface dust #64 size 21.4
    82338 
    82339 > surface dust #65 size 21.4
    82340 
    82341 > surface dust #66 size 21.4
    82342 
    82343 > surface dust #67 size 21.4
    82344 
    82345 > surface dust #68 size 21.4
    82346 
    82347 > surface dust #69 size 21.4
    82348 
    82349 > surface dust #70 size 21.4
    82350 
    82351 > surface dust #71 size 21.4
    82352 
    82353 > surface dust #72 size 21.4
    82354 
    82355 > surface dust #54 size 43
    82356 
    82357 > save /Users/shoichitachiyama/Desktop/Fig4C.png supersample 2
    82358 > transparentBackground true
    82359 
    82360 > view P3
    82361 
    82362 > volume #3 region 0,0,0,249,249,249
    82363 
    82364 > show #!88 models
    82365 
    82366 > show #!89 models
    82367 
    82368 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    82369 > model_09282025.cxs includeMaps true
    82370 
    82371 > show #!37 models
    82372 
    82373 > show #!37-53 models
    82374 
    82375 > show #!209 models
    82376 
    82377 > surface dust #3 size 43
    82378 
    82379 > surface dust #88 size 43
    82380 
    82381 > surface dust #89 size 43
    82382 
    82383 > surface dust #209 size 43
    82384 
    82385 > surface dust #37 size 21.4
    82386 
    82387 > surface dust #38 size 21.4
    82388 
    82389 > surface dust #39 size 21.4
    82390 
    82391 > surface dust #40 size 21.4
    82392 
    82393 > surface dust #41 size 21.4
    82394 
    82395 > surface dust #42 size 21.4
    82396 
    82397 > surface dust #43 size 21.4
    82398 
    82399 > surface dust #44 size 21.4
    82400 
    82401 > surface dust #45 size 21.4
    82402 
    82403 > surface dust #46 size 21.4
    82404 
    82405 > surface dust #47 size 21.4
    82406 
    82407 > surface dust #48 size 21.4
    82408 
    82409 > surface dust #49 size 21.4
    82410 
    82411 > surface dust #50 size 21.4
    82412 
    82413 > surface dust #51 size 21.4
    82414 
    82415 > surface dust #52 size 21.4
    82416 
    82417 > surface dust #53 size 21.4
    82418 
    82419 > surface dust #55 size 21.4
    82420 
    82421 > surface dust #56 size 21.4
    82422 
    82423 > surface dust #57 size 21.4
    82424 
    82425 > surface dust #58 size 21.4
    82426 
    82427 > surface dust #59 size 21.4
    82428 
    82429 > surface dust #60 size 21.4
    82430 
    82431 > surface dust #61 size 21.4
    82432 
    82433 > surface dust #62 size 21.4
    82434 
    82435 > surface dust #63 size 21.4
    82436 
    82437 > surface dust #64 size 21.4
    82438 
    82439 > surface dust #65 size 21.4
    82440 
    82441 > surface dust #66 size 21.4
    82442 
    82443 > surface dust #67 size 21.4
    82444 
    82445 > surface dust #68 size 21.4
    82446 
    82447 > surface dust #69 size 21.4
    82448 
    82449 > surface dust #70 size 21.4
    82450 
    82451 > surface dust #71 size 21.4
    82452 
    82453 > surface dust #72 size 21.4
    82454 
    82455 > surface dust #54 size 43
    82456 
    82457 > save /Users/shoichitachiyama/Desktop/Fig4A.png supersample 2
    82458 > transparentBackground true
    82459 
    82460 > save /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    82461 > model_09282025.cxs includeMaps true
    82462 
    82463 > close session
    82464 
    82465 > open /Users/shoichitachiyama/Desktop/Fig4-Final-models/Figure4-Final-
    82466 > model_09282025.cxs format session
    82467 
    82468 No such file/path: /Users/shoichitachiyama/Desktop/Fig4-Final-
    82469 models/Figure4-Final-model_09282025.cxs 
    82470 
    82471 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    82472 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    82473 > review/Manuscript/09262025/Comtenue--9252026/Contenue-
    82474 > ver2-Fig3_from_09252025.cxs"
    82475 
    82476 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    82477 level 0.0137, step 1, values float32 
    82478 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    82479 step 1, values float32 
    82480 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    82481 level 0.0137, step 1, values float32 
    82482 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    82483 level 0.0137, step 1, values float32 
    82484 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    82485 level 0.027, step 1, values float32 
    82486 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    82487 step 1, values float32 
    82488 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    82489 level 0.0166, step 1, values float32 
    82490 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    82491 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82492 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    82493 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82494 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    82495 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82496 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    82497 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82498 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    82499 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82500 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    82501 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82502 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    82503 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82504 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    82505 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82506 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    82507 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82508 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    82509 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82510 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    82511 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82512 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    82513 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82514 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    82515 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82516 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    82517 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82518 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    82519 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82520 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    82521 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82522 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    82523 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82524 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    82525 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82526 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    82527 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82528 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    82529 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82530 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    82531 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82532 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    82533 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82534 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    82535 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82536 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    82537 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82538 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    82539 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82540 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    82541 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82542 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    82543 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82544 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    82545 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82546 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    82547 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82548 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    82549 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82550 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    82551 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82552 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    82553 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82554 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    82555 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82556 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    82557 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82558 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    82559 shown at level 0.000785, step 1, values float32 
    82560 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    82561 shown at level 0.000785, step 1, values float32 
    82562 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    82563 shown at level 0.000785, step 1, values float32 
    82564 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    82565 shown at level 0.000785, step 1, values float32 
    82566 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    82567 shown at level 0.000785, step 1, values float32 
    82568 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    82569 shown at level 0.000785, step 1, values float32 
    82570 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    82571 shown at level 0.000785, step 1, values float32 
    82572 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    82573 shown at level 0.000785, step 1, values float32 
    82574 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    82575 shown at level 0.000785, step 1, values float32 
    82576 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    82577 shown at level 0.000785, step 1, values float32 
    82578 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    82579 shown at level 0.000785, step 1, values float32 
    82580 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    82581 shown at level 0.000785, step 1, values float32 
    82582 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    82583 shown at level 0.000785, step 1, values float32 
    82584 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    82585 shown at level 0.000785, step 1, values float32 
    82586 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    82587 shown at level 0.000785, step 1, values float32 
    82588 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    82589 shown at level 0.000785, step 1, values float32 
    82590 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    82591 shown at level 0.000785, step 1, values float32 
    82592 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    82593 shown at level 0.00107, step 1, values float32 
    82594 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    82595 shown at level 0.00107, step 1, values float32 
    82596 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    82597 shown at level 0.00107, step 1, values float32 
    82598 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    82599 shown at level 0.00107, step 1, values float32 
    82600 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    82601 shown at level 0.00107, step 1, values float32 
    82602 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    82603 shown at level 0.00107, step 1, values float32 
    82604 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    82605 shown at level 0.00107, step 1, values float32 
    82606 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    82607 shown at level 0.00107, step 1, values float32 
    82608 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    82609 shown at level 0.00107, step 1, values float32 
    82610 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    82611 shown at level 0.00107, step 1, values float32 
    82612 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    82613 shown at level 0.00107, step 1, values float32 
    82614 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    82615 shown at level 0.00107, step 1, values float32 
    82616 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    82617 shown at level 0.00107, step 1, values float32 
    82618 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    82619 shown at level 0.00107, step 1, values float32 
    82620 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    82621 shown at level 0.00107, step 1, values float32 
    82622 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    82623 shown at level 0.00107, step 1, values float32 
    82624 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    82625 shown at level 0.00107, step 1, values float32 
    82626 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    82627 shown at level 0.000848, step 1, values float32 
    82628 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    82629 shown at level 0.000848, step 1, values float32 
    82630 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    82631 shown at level 0.000848, step 1, values float32 
    82632 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    82633 shown at level 0.000848, step 1, values float32 
    82634 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    82635 shown at level 0.000848, step 1, values float32 
    82636 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    82637 shown at level 0.000848, step 1, values float32 
    82638 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    82639 shown at level 0.000848, step 1, values float32 
    82640 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    82641 shown at level 0.000848, step 1, values float32 
    82642 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    82643 shown at level 0.000848, step 1, values float32 
    82644 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    82645 shown at level 0.000848, step 1, values float32 
    82646 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    82647 shown at level 0.000848, step 1, values float32 
    82648 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    82649 shown at level 0.000848, step 1, values float32 
    82650 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    82651 shown at level 0.000848, step 1, values float32 
    82652 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    82653 shown at level 0.000848, step 1, values float32 
    82654 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    82655 shown at level 0.000848, step 1, values float32 
    82656 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    82657 shown at level 0.000848, step 1, values float32 
    82658 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    82659 shown at level 0.000848, step 1, values float32 
    82660 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    82661 2.14, shown at level 0.000997, step 1, values float32 
    82662 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    82663 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82664 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    82665 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82666 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    82667 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82668 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    82669 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82670 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    82671 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82672 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    82673 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82674 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    82675 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82676 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    82677 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82678 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    82679 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82680 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    82681 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82682 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    82683 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82684 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    82685 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82686 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    82687 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82688 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    82689 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82690 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    82691 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82692 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    82693 pixel 2.14, shown at level 0.000997, step 1, values float32 
    82694 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    82695 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82696 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    82697 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82698 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    82699 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82700 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    82701 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82702 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    82703 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82704 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    82705 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82706 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    82707 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82708 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    82709 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82710 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    82711 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82712 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    82713 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82714 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    82715 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82716 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    82717 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82718 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    82719 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82720 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    82721 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82722 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    82723 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82724 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    82725 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82726 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    82727 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    82728 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    82729 shown at level 0.0112, step 1, values float32 
    82730 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    82731 2.14, shown at level 0.00974, step 1, values float32 
    82732 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    82733 level 0.157, step 1, values float32 
    82734 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    82735 0.0283, step 1, values float32 
    82736 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    82737 level 0.00404, step 1, values float32 
    82738 Opened PflAB_wout_FlgYoverlap_imasked as #18, grid size 200,200,200, pixel
    82739 2.14, shown at level 0.00045, step 1, values float32 
    82740 Opened PflC-only-Model-area.mrc as #19, grid size 200,200,200, pixel 2.14,
    82741 shown at level 0.00107, step 1, values float32 
    82742 Opened PflC-only-Model-area.mrc copy as #20, grid size 200,200,200, pixel
    82743 2.14, shown at level 0.00107, step 1, values float32 
    82744 Opened PflC-only-Model-area.mrc copy as #21, grid size 200,200,200, pixel
    82745 2.14, shown at level 0.00107, step 1, values float32 
    82746 Opened PflC-only-Model-area.mrc copy as #22, grid size 200,200,200, pixel
    82747 2.14, shown at level 0.00107, step 1, values float32 
    82748 Opened PflC-only-Model-area.mrc copy as #23, grid size 200,200,200, pixel
    82749 2.14, shown at level 0.00107, step 1, values float32 
    82750 Opened PflC-only-Model-area.mrc copy as #24, grid size 200,200,200, pixel
    82751 2.14, shown at level 0.00107, step 1, values float32 
    82752 Opened PflC-only-Model-area.mrc copy as #25, grid size 200,200,200, pixel
    82753 2.14, shown at level 0.00107, step 1, values float32 
    82754 Opened PflC-only-Model-area.mrc copy as #26, grid size 200,200,200, pixel
    82755 2.14, shown at level 0.00107, step 1, values float32 
    82756 Opened PflC-only-Model-area.mrc copy as #27, grid size 200,200,200, pixel
    82757 2.14, shown at level 0.00107, step 1, values float32 
    82758 Opened PflC-only-Model-area.mrc copy as #28, grid size 200,200,200, pixel
    82759 2.14, shown at level 0.00107, step 1, values float32 
    82760 Opened PflC-only-Model-area.mrc copy as #29, grid size 200,200,200, pixel
    82761 2.14, shown at level 0.00107, step 1, values float32 
    82762 Opened PflC-only-Model-area.mrc copy as #30, grid size 200,200,200, pixel
    82763 2.14, shown at level 0.00107, step 1, values float32 
    82764 Opened PflC-only-Model-area.mrc copy as #31, grid size 200,200,200, pixel
    82765 2.14, shown at level 0.00107, step 1, values float32 
    82766 Opened PflC-only-Model-area.mrc copy as #32, grid size 200,200,200, pixel
    82767 2.14, shown at level 0.00107, step 1, values float32 
    82768 Opened PflC-only-Model-area.mrc copy as #33, grid size 200,200,200, pixel
    82769 2.14, shown at level 0.00107, step 1, values float32 
    82770 Opened PflC-only-Model-area.mrc copy as #34, grid size 200,200,200, pixel
    82771 2.14, shown at level 0.00107, step 1, values float32 
    82772 Opened PflC-only-Model-area.mrc copy as #35, grid size 200,200,200, pixel
    82773 2.14, shown at level 0.00107, step 1, values float32 
    82774 Opened PflC-only-Model-area.mrc copy as #36, grid size 200,200,200, pixel
    82775 2.14, shown at level 0.00107, step 1, values float32 
    82776 Opened Long-cage.mrc as #37, grid size 200,200,200, pixel 2.14, shown at level
    82777 0.00404, step 1, values float32 
    82778 Opened Short-cage.mrc as #38, grid size 200,200,200, pixel 2.14, shown at
    82779 level 0.00404, step 1, values float32 
    82780 Opened Other-PflC.mrc as #39, grid size 200,200,200, pixel 2.14, shown at
    82781 level 0.00404, step 1, values float32 
    82782 Opened Long-cage_imasked as #45, grid size 200,200,200, pixel 2.14, shown at
    82783 level 0.00404, step 1, values float32 
    82784 Opened Short-cage_imasked as #46, grid size 200,200,200, pixel 2.14, shown at
    82785 level 0.00404, step 1, values float32 
    82786 Opened Short-cage.mrc copy as #65, grid size 200,200,200, pixel 2.14, shown at
    82787 level 0.00404, step 1, values float32 
    82788 Opened Short-cage.mrc copy as #66, grid size 200,200,200, pixel 2.14, shown at
    82789 level 0.00404, step 1, values float32 
    82790 Opened Short-cage.mrc copy as #67, grid size 200,200,200, pixel 2.14, shown at
    82791 level 0.00404, step 1, values float32 
    82792 Opened Short-cage.mrc copy as #68, grid size 200,200,200, pixel 2.14, shown at
    82793 level 0.00404, step 1, values float32 
    82794 Opened Short-cage.mrc copy as #69, grid size 200,200,200, pixel 2.14, shown at
    82795 level 0.00404, step 1, values float32 
    82796 Opened Short-cage.mrc copy as #70, grid size 200,200,200, pixel 2.14, shown at
    82797 level 0.00404, step 1, values float32 
    82798 Opened Short-cage.mrc copy as #71, grid size 200,200,200, pixel 2.14, shown at
    82799 level 0.00404, step 1, values float32 
    82800 Opened Short-cage.mrc copy as #72, grid size 200,200,200, pixel 2.14, shown at
    82801 level 0.00404, step 1, values float32 
    82802 Opened Short-cage.mrc copy as #73, grid size 200,200,200, pixel 2.14, shown at
    82803 level 0.00404, step 1, values float32 
    82804 Opened Short-cage.mrc copy as #74, grid size 200,200,200, pixel 2.14, shown at
    82805 level 0.00404, step 1, values float32 
    82806 Opened Short-cage.mrc copy as #75, grid size 200,200,200, pixel 2.14, shown at
    82807 level 0.00404, step 1, values float32 
    82808 Opened Short-cage.mrc copy as #76, grid size 200,200,200, pixel 2.14, shown at
    82809 level 0.00404, step 1, values float32 
    82810 Opened Short-cage.mrc copy as #77, grid size 200,200,200, pixel 2.14, shown at
    82811 level 0.00404, step 1, values float32 
    82812 Opened Short-cage.mrc copy as #78, grid size 200,200,200, pixel 2.14, shown at
    82813 level 0.00404, step 1, values float32 
    82814 Opened Short-cage.mrc copy as #79, grid size 200,200,200, pixel 2.14, shown at
    82815 level 0.00404, step 1, values float32 
    82816 Opened Short-cage.mrc copy as #80, grid size 200,200,200, pixel 2.14, shown at
    82817 level 0.00404, step 1, values float32 
    82818 Opened Short-cage.mrc copy as #81, grid size 200,200,200, pixel 2.14, shown at
    82819 level 0.00404, step 1, values float32 
    82820 Opened Long-cage.mrc copy as #84, grid size 200,200,200, pixel 2.14, shown at
    82821 level 0.00404, step 1, values float32 
    82822 Opened Long-cage.mrc as #86, grid size 200,200,200, pixel 2.14, shown at level
    82823 0.00261, step 1, values float32 
    82824 Opened PflC-region-long-cage.mrc as #90, grid size 200,200,200, pixel 2.14,
    82825 shown at level 0.00261, step 1, values float32 
    82826 Opened PflD-Longcage-region.mrc as #91, grid size 200,200,200, pixel 2.14,
    82827 shown at level 0.00261, step 1, values float32 
    82828 Opened PflC-region-long-cage.mrc copy as #49, grid size 200,200,200, pixel
    82829 2.14, shown at level 0.00261, step 1, values float32 
    82830 Opened PflC-region-long-cage.mrc copy as #50, grid size 200,200,200, pixel
    82831 2.14, shown at level 0.00261, step 1, values float32 
    82832 Opened PflC-region-long-cage.mrc copy as #51, grid size 200,200,200, pixel
    82833 2.14, shown at level 0.00261, step 1, values float32 
    82834 Opened PflC-region-long-cage.mrc copy as #52, grid size 200,200,200, pixel
    82835 2.14, shown at level 0.00261, step 1, values float32 
    82836 Opened PflC-region-long-cage.mrc copy as #53, grid size 200,200,200, pixel
    82837 2.14, shown at level 0.00261, step 1, values float32 
    82838 Opened PflC-region-long-cage.mrc copy as #54, grid size 200,200,200, pixel
    82839 2.14, shown at level 0.00261, step 1, values float32 
    82840 Opened PflC-region-long-cage.mrc copy as #55, grid size 200,200,200, pixel
    82841 2.14, shown at level 0.00261, step 1, values float32 
    82842 Opened PflC-region-long-cage.mrc copy as #56, grid size 200,200,200, pixel
    82843 2.14, shown at level 0.00261, step 1, values float32 
    82844 Opened PflC-region-long-cage.mrc copy as #57, grid size 200,200,200, pixel
    82845 2.14, shown at level 0.00261, step 1, values float32 
    82846 Opened PflC-region-long-cage.mrc copy as #58, grid size 200,200,200, pixel
    82847 2.14, shown at level 0.00261, step 1, values float32 
    82848 Opened PflC-region-long-cage.mrc copy as #59, grid size 200,200,200, pixel
    82849 2.14, shown at level 0.00261, step 1, values float32 
    82850 Opened PflC-region-long-cage.mrc copy as #60, grid size 200,200,200, pixel
    82851 2.14, shown at level 0.00261, step 1, values float32 
    82852 Opened PflC-region-long-cage.mrc copy as #61, grid size 200,200,200, pixel
    82853 2.14, shown at level 0.00261, step 1, values float32 
    82854 Opened PflC-region-long-cage.mrc copy as #62, grid size 200,200,200, pixel
    82855 2.14, shown at level 0.00261, step 1, values float32 
    82856 Opened PflC-region-long-cage.mrc copy as #63, grid size 200,200,200, pixel
    82857 2.14, shown at level 0.00261, step 1, values float32 
    82858 Opened PflC-region-long-cage.mrc copy as #64, grid size 200,200,200, pixel
    82859 2.14, shown at level 0.00261, step 1, values float32 
    82860 Opened PflD-Longcage-region.mrc copy as #93, grid size 200,200,200, pixel
    82861 2.14, shown at level 0.00261, step 1, values float32 
    82862 Opened PflD-Longcage-region.mrc copy as #94, grid size 200,200,200, pixel
    82863 2.14, shown at level 0.00261, step 1, values float32 
    82864 Opened PflD-Longcage-region.mrc copy as #95, grid size 200,200,200, pixel
    82865 2.14, shown at level 0.00261, step 1, values float32 
    82866 Opened PflD-Longcage-region.mrc copy as #96, grid size 200,200,200, pixel
    82867 2.14, shown at level 0.00261, step 1, values float32 
    82868 Opened PflD-Longcage-region.mrc copy as #97, grid size 200,200,200, pixel
    82869 2.14, shown at level 0.00261, step 1, values float32 
    82870 Opened PflD-Longcage-region.mrc copy as #98, grid size 200,200,200, pixel
    82871 2.14, shown at level 0.00261, step 1, values float32 
    82872 Opened PflD-Longcage-region.mrc copy as #99, grid size 200,200,200, pixel
    82873 2.14, shown at level 0.00261, step 1, values float32 
    82874 Opened PflD-Longcage-region.mrc copy as #100, grid size 200,200,200, pixel
    82875 2.14, shown at level 0.00261, step 1, values float32 
    82876 Opened PflD-Longcage-region.mrc copy as #101, grid size 200,200,200, pixel
    82877 2.14, shown at level 0.00261, step 1, values float32 
    82878 Opened PflD-Longcage-region.mrc copy as #102, grid size 200,200,200, pixel
    82879 2.14, shown at level 0.00261, step 1, values float32 
    82880 Opened PflD-Longcage-region.mrc copy as #103, grid size 200,200,200, pixel
    82881 2.14, shown at level 0.00261, step 1, values float32 
    82882 Opened PflD-Longcage-region.mrc copy as #104, grid size 200,200,200, pixel
    82883 2.14, shown at level 0.00261, step 1, values float32 
    82884 Opened PflD-Longcage-region.mrc copy as #105, grid size 200,200,200, pixel
    82885 2.14, shown at level 0.00261, step 1, values float32 
    82886 Opened PflD-Longcage-region.mrc copy as #106, grid size 200,200,200, pixel
    82887 2.14, shown at level 0.00261, step 1, values float32 
    82888 Opened PflD-Longcage-region.mrc copy as #210, grid size 200,200,200, pixel
    82889 2.14, shown at level 0.00261, step 1, values float32 
    82890 Opened PflD-Longcage-region.mrc copy as #211, grid size 200,200,200, pixel
    82891 2.14, shown at level 0.00261, step 1, values float32 
    82892 Opened PflD-Longcage-region.mrc copy as #212, grid size 200,200,200, pixel
    82893 2.14, shown at level 0.00261, step 1, values float32 
    82894 Opened PflD-Longcage-region.mrc copy as #213, grid size 200,200,200, pixel
    82895 2.14, shown at level 0.00261, step 1, values float32 
    82896 opened ChimeraX session 
    82897 Showing Long-cage.seg - 559 regions, 559 surfaces 
    82898 
    82899 > hide #!17 models
    82900 
    82901 > show #!48 models
    82902 
    82903 > view orient
    82904 
    82905 > turn x 90
    82906 
    82907 > turn y 90
    82908 
    82909 > save /Users/shoichitachiyama/Desktop/Ext_18_09282025.png supersample 2
    82910 > transparentBackground true
    82911 
    82912 > close session
    82913 
    82914 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    82915 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    82916 > review/Manuscript/09262025/New-Figure4/Fig4-Final-models/FlgY-
    82917 > PflABrings_09282025.pdb"
    82918 
    82919 Chain information for FlgY-PflABrings_09282025.pdb 
    82920 --- 
    82921 Chain | Description 
    82922 1.18/BX 1.19/BX 1.20/BX 1.21/BX 1.22/BX 1.23/BX 1.24/BX 1.25/BX 1.26/BX 1.27/BX 1.28/BX 1.29/BX 1.30/BX 1.31/BX 1.32/BX 1.33/BX 1.34/BX 1.18/BY 1.19/BY 1.20/BY 1.21/BY 1.22/BY 1.23/BY 1.24/BY 1.25/BY 1.26/BY 1.27/BY 1.28/BY 1.29/BY 1.30/BY 1.31/BY 1.32/BY 1.33/BY 1.34/BY | No description available 
    82923 1.1/l 1.2/l 1.3/l 1.4/l 1.5/l 1.6/l 1.7/l 1.8/l 1.9/l 1.10/l 1.11/l 1.12/l 1.13/l 1.14/l 1.15/l 1.16/l 1.17/l | No description available 
    82924 1.1/m 1.2/m 1.3/m 1.4/m 1.5/m 1.6/m 1.7/m 1.8/m 1.9/m 1.10/m 1.11/m 1.12/m 1.13/m 1.14/m 1.15/m 1.16/m 1.17/m | No description available 
    82925 1.1/s 1.2/s 1.3/s 1.4/s 1.5/s 1.6/s 1.7/s 1.8/s 1.9/s 1.10/s 1.11/s 1.12/s 1.13/s 1.14/s 1.15/s 1.16/s 1.17/s | No description available 
    82926  
    82927 
    82928 > close session
    82929 
    82930 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project
    82931 > files/C.jejuni/2nd_paper/For-2nd-manuscript/After-
    82932 > review/Manuscript/09262025/New-Figure4/Fig4-Final-models/Figure4-Final-
    82933 > model_09282025.cxs"
    82934 
    82935 Opened C17_proximal-disk.mrc as #1, grid size 250,250,250, pixel 4.3, shown at
    82936 level 0.0137, step 1, values float32 
    82937 Opened Rod.mrc as #3, grid size 250,250,250, pixel 4.3, shown at level 0.0137,
    82938 step 1, values float32 
    82939 Opened Exp_ATP.mrc gaussian as #82, grid size 250,250,250, pixel 4.3, shown at
    82940 level 0.0137, step 1, values float32 
    82941 Opened LP-ring.mrc gaussian as #83, grid size 250,250,250, pixel 4.3, shown at
    82942 level 0.0137, step 1, values float32 
    82943 Opened OM.mrc gaussian as #88, grid size 250,250,250, pixel 4.3, shown at
    82944 level 0.027, step 1, values float32 
    82945 Opened IM.mrc as #87, grid size 250,250,250, pixel 4.3, shown at level 0.0881,
    82946 step 1, values float32 
    82947 Opened IM.mrc gaussian as #89, grid size 250,250,250, pixel 4.3, shown at
    82948 level 0.0166, step 1, values float32 
    82949 Opened Single_Cage_unit.mrc gaussian copy as #107, grid size 200,200,200,
    82950 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82951 Opened Single_Cage_unit.mrc gaussian copy as #108, grid size 200,200,200,
    82952 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82953 Opened Single_Cage_unit.mrc gaussian copy as #109, grid size 200,200,200,
    82954 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82955 Opened Single_Cage_unit.mrc gaussian copy as #110, grid size 200,200,200,
    82956 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82957 Opened Single_Cage_unit.mrc gaussian copy as #111, grid size 200,200,200,
    82958 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82959 Opened Single_Cage_unit.mrc gaussian copy as #112, grid size 200,200,200,
    82960 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82961 Opened Single_Cage_unit.mrc gaussian copy as #113, grid size 200,200,200,
    82962 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82963 Opened Single_Cage_unit.mrc gaussian copy as #114, grid size 200,200,200,
    82964 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82965 Opened Single_Cage_unit.mrc gaussian copy as #115, grid size 200,200,200,
    82966 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82967 Opened Single_Cage_unit.mrc gaussian copy as #116, grid size 200,200,200,
    82968 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82969 Opened Single_Cage_unit.mrc gaussian copy as #117, grid size 200,200,200,
    82970 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82971 Opened Single_Cage_unit.mrc gaussian copy as #118, grid size 200,200,200,
    82972 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82973 Opened Single_Cage_unit.mrc gaussian copy as #119, grid size 200,200,200,
    82974 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82975 Opened Single_Cage_unit.mrc gaussian copy as #120, grid size 200,200,200,
    82976 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82977 Opened Single_Cage_unit.mrc gaussian copy as #121, grid size 200,200,200,
    82978 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82979 Opened Single_Cage_unit.mrc gaussian copy as #122, grid size 200,200,200,
    82980 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82981 Opened Single_Cage_unit.mrc gaussian copy as #123, grid size 200,200,200,
    82982 pixel 2.14, shown at level 0.000576, step 1, values float32 
    82983 Opened 1xMotBpg-09092025.mrc gaussian copy as #124, grid size 200,200,200,
    82984 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82985 Opened 1xMotBpg-09092025.mrc gaussian copy as #125, grid size 200,200,200,
    82986 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82987 Opened 1xMotBpg-09092025.mrc gaussian copy as #126, grid size 200,200,200,
    82988 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82989 Opened 1xMotBpg-09092025.mrc gaussian copy as #127, grid size 200,200,200,
    82990 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82991 Opened 1xMotBpg-09092025.mrc gaussian copy as #128, grid size 200,200,200,
    82992 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82993 Opened 1xMotBpg-09092025.mrc gaussian copy as #129, grid size 200,200,200,
    82994 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82995 Opened 1xMotBpg-09092025.mrc gaussian copy as #130, grid size 200,200,200,
    82996 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82997 Opened 1xMotBpg-09092025.mrc gaussian copy as #131, grid size 200,200,200,
    82998 pixel 2.14, shown at level 0.000793, step 1, values float32 
    82999 Opened 1xMotBpg-09092025.mrc gaussian copy as #132, grid size 200,200,200,
    83000 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83001 Opened 1xMotBpg-09092025.mrc gaussian copy as #133, grid size 200,200,200,
    83002 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83003 Opened 1xMotBpg-09092025.mrc gaussian copy as #134, grid size 200,200,200,
    83004 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83005 Opened 1xMotBpg-09092025.mrc gaussian copy as #135, grid size 200,200,200,
    83006 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83007 Opened 1xMotBpg-09092025.mrc gaussian copy as #136, grid size 200,200,200,
    83008 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83009 Opened 1xMotBpg-09092025.mrc gaussian copy as #137, grid size 200,200,200,
    83010 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83011 Opened 1xMotBpg-09092025.mrc gaussian copy as #138, grid size 200,200,200,
    83012 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83013 Opened 1xMotBpg-09092025.mrc gaussian copy as #139, grid size 200,200,200,
    83014 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83015 Opened 1xMotBpg-09092025.mrc gaussian copy as #140, grid size 200,200,200,
    83016 pixel 2.14, shown at level 0.000793, step 1, values float32 
    83017 Opened 1xPflD.mrc gaussian copy as #141, grid size 200,200,200, pixel 2.14,
    83018 shown at level 0.000785, step 1, values float32 
    83019 Opened 1xPflD.mrc gaussian copy as #142, grid size 200,200,200, pixel 2.14,
    83020 shown at level 0.000785, step 1, values float32 
    83021 Opened 1xPflD.mrc gaussian copy as #143, grid size 200,200,200, pixel 2.14,
    83022 shown at level 0.000785, step 1, values float32 
    83023 Opened 1xPflD.mrc gaussian copy as #144, grid size 200,200,200, pixel 2.14,
    83024 shown at level 0.000785, step 1, values float32 
    83025 Opened 1xPflD.mrc gaussian copy as #145, grid size 200,200,200, pixel 2.14,
    83026 shown at level 0.000785, step 1, values float32 
    83027 Opened 1xPflD.mrc gaussian copy as #146, grid size 200,200,200, pixel 2.14,
    83028 shown at level 0.000785, step 1, values float32 
    83029 Opened 1xPflD.mrc gaussian copy as #147, grid size 200,200,200, pixel 2.14,
    83030 shown at level 0.000785, step 1, values float32 
    83031 Opened 1xPflD.mrc gaussian copy as #148, grid size 200,200,200, pixel 2.14,
    83032 shown at level 0.000785, step 1, values float32 
    83033 Opened 1xPflD.mrc gaussian copy as #149, grid size 200,200,200, pixel 2.14,
    83034 shown at level 0.000785, step 1, values float32 
    83035 Opened 1xPflD.mrc gaussian copy as #150, grid size 200,200,200, pixel 2.14,
    83036 shown at level 0.000785, step 1, values float32 
    83037 Opened 1xPflD.mrc gaussian copy as #151, grid size 200,200,200, pixel 2.14,
    83038 shown at level 0.000785, step 1, values float32 
    83039 Opened 1xPflD.mrc gaussian copy as #152, grid size 200,200,200, pixel 2.14,
    83040 shown at level 0.000785, step 1, values float32 
    83041 Opened 1xPflD.mrc gaussian copy as #153, grid size 200,200,200, pixel 2.14,
    83042 shown at level 0.000785, step 1, values float32 
    83043 Opened 1xPflD.mrc gaussian copy as #154, grid size 200,200,200, pixel 2.14,
    83044 shown at level 0.000785, step 1, values float32 
    83045 Opened 1xPflD.mrc gaussian copy as #155, grid size 200,200,200, pixel 2.14,
    83046 shown at level 0.000785, step 1, values float32 
    83047 Opened 1xPflD.mrc gaussian copy as #156, grid size 200,200,200, pixel 2.14,
    83048 shown at level 0.000785, step 1, values float32 
    83049 Opened 1xPflD.mrc gaussian copy as #157, grid size 200,200,200, pixel 2.14,
    83050 shown at level 0.000785, step 1, values float32 
    83051 Opened 1xPflC.mrc gaussian copy as #158, grid size 200,200,200, pixel 2.14,
    83052 shown at level 0.00107, step 1, values float32 
    83053 Opened 1xPflC.mrc gaussian copy as #159, grid size 200,200,200, pixel 2.14,
    83054 shown at level 0.00107, step 1, values float32 
    83055 Opened 1xPflC.mrc gaussian copy as #160, grid size 200,200,200, pixel 2.14,
    83056 shown at level 0.00107, step 1, values float32 
    83057 Opened 1xPflC.mrc gaussian copy as #161, grid size 200,200,200, pixel 2.14,
    83058 shown at level 0.00107, step 1, values float32 
    83059 Opened 1xPflC.mrc gaussian copy as #162, grid size 200,200,200, pixel 2.14,
    83060 shown at level 0.00107, step 1, values float32 
    83061 Opened 1xPflC.mrc gaussian copy as #163, grid size 200,200,200, pixel 2.14,
    83062 shown at level 0.00107, step 1, values float32 
    83063 Opened 1xPflC.mrc gaussian copy as #164, grid size 200,200,200, pixel 2.14,
    83064 shown at level 0.00107, step 1, values float32 
    83065 Opened 1xPflC.mrc gaussian copy as #165, grid size 200,200,200, pixel 2.14,
    83066 shown at level 0.00107, step 1, values float32 
    83067 Opened 1xPflC.mrc gaussian copy as #166, grid size 200,200,200, pixel 2.14,
    83068 shown at level 0.00107, step 1, values float32 
    83069 Opened 1xPflC.mrc gaussian copy as #167, grid size 200,200,200, pixel 2.14,
    83070 shown at level 0.00107, step 1, values float32 
    83071 Opened 1xPflC.mrc gaussian copy as #168, grid size 200,200,200, pixel 2.14,
    83072 shown at level 0.00107, step 1, values float32 
    83073 Opened 1xPflC.mrc gaussian copy as #169, grid size 200,200,200, pixel 2.14,
    83074 shown at level 0.00107, step 1, values float32 
    83075 Opened 1xPflC.mrc gaussian copy as #170, grid size 200,200,200, pixel 2.14,
    83076 shown at level 0.00107, step 1, values float32 
    83077 Opened 1xPflC.mrc gaussian copy as #171, grid size 200,200,200, pixel 2.14,
    83078 shown at level 0.00107, step 1, values float32 
    83079 Opened 1xPflC.mrc gaussian copy as #172, grid size 200,200,200, pixel 2.14,
    83080 shown at level 0.00107, step 1, values float32 
    83081 Opened 1xPflC.mrc gaussian copy as #173, grid size 200,200,200, pixel 2.14,
    83082 shown at level 0.00107, step 1, values float32 
    83083 Opened 1xPflC.mrc gaussian copy as #174, grid size 200,200,200, pixel 2.14,
    83084 shown at level 0.00107, step 1, values float32 
    83085 Opened 1xFliL.mrc gaussian copy as #175, grid size 200,200,200, pixel 2.14,
    83086 shown at level 0.000848, step 1, values float32 
    83087 Opened 1xFliL.mrc gaussian copy as #176, grid size 200,200,200, pixel 2.14,
    83088 shown at level 0.000848, step 1, values float32 
    83089 Opened 1xFliL.mrc gaussian copy as #177, grid size 200,200,200, pixel 2.14,
    83090 shown at level 0.000848, step 1, values float32 
    83091 Opened 1xFliL.mrc gaussian copy as #178, grid size 200,200,200, pixel 2.14,
    83092 shown at level 0.000848, step 1, values float32 
    83093 Opened 1xFliL.mrc gaussian copy as #179, grid size 200,200,200, pixel 2.14,
    83094 shown at level 0.000848, step 1, values float32 
    83095 Opened 1xFliL.mrc gaussian copy as #180, grid size 200,200,200, pixel 2.14,
    83096 shown at level 0.000848, step 1, values float32 
    83097 Opened 1xFliL.mrc gaussian copy as #181, grid size 200,200,200, pixel 2.14,
    83098 shown at level 0.000848, step 1, values float32 
    83099 Opened 1xFliL.mrc gaussian copy as #182, grid size 200,200,200, pixel 2.14,
    83100 shown at level 0.000848, step 1, values float32 
    83101 Opened 1xFliL.mrc gaussian copy as #183, grid size 200,200,200, pixel 2.14,
    83102 shown at level 0.000848, step 1, values float32 
    83103 Opened 1xFliL.mrc gaussian copy as #184, grid size 200,200,200, pixel 2.14,
    83104 shown at level 0.000848, step 1, values float32 
    83105 Opened 1xFliL.mrc gaussian copy as #185, grid size 200,200,200, pixel 2.14,
    83106 shown at level 0.000848, step 1, values float32 
    83107 Opened 1xFliL.mrc gaussian copy as #186, grid size 200,200,200, pixel 2.14,
    83108 shown at level 0.000848, step 1, values float32 
    83109 Opened 1xFliL.mrc gaussian copy as #187, grid size 200,200,200, pixel 2.14,
    83110 shown at level 0.000848, step 1, values float32 
    83111 Opened 1xFliL.mrc gaussian copy as #188, grid size 200,200,200, pixel 2.14,
    83112 shown at level 0.000848, step 1, values float32 
    83113 Opened 1xFliL.mrc gaussian copy as #189, grid size 200,200,200, pixel 2.14,
    83114 shown at level 0.000848, step 1, values float32 
    83115 Opened 1xFliL.mrc gaussian copy as #190, grid size 200,200,200, pixel 2.14,
    83116 shown at level 0.000848, step 1, values float32 
    83117 Opened 1xFliL.mrc gaussian copy as #191, grid size 200,200,200, pixel 2.14,
    83118 shown at level 0.000848, step 1, values float32 
    83119 Opened Single-MotA-ring.mrc gaussian as #192, grid size 200,200,200, pixel
    83120 2.14, shown at level 0.000997, step 1, values float32 
    83121 Opened Single-MotA-ring.mrc gaussian copy as #193, grid size 200,200,200,
    83122 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83123 Opened Single-MotA-ring.mrc gaussian copy as #194, grid size 200,200,200,
    83124 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83125 Opened Single-MotA-ring.mrc gaussian copy as #195, grid size 200,200,200,
    83126 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83127 Opened Single-MotA-ring.mrc gaussian copy as #196, grid size 200,200,200,
    83128 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83129 Opened Single-MotA-ring.mrc gaussian copy as #197, grid size 200,200,200,
    83130 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83131 Opened Single-MotA-ring.mrc gaussian copy as #198, grid size 200,200,200,
    83132 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83133 Opened Single-MotA-ring.mrc gaussian copy as #199, grid size 200,200,200,
    83134 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83135 Opened Single-MotA-ring.mrc gaussian copy as #200, grid size 200,200,200,
    83136 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83137 Opened Single-MotA-ring.mrc gaussian copy as #201, grid size 200,200,200,
    83138 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83139 Opened Single-MotA-ring.mrc gaussian copy as #202, grid size 200,200,200,
    83140 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83141 Opened Single-MotA-ring.mrc gaussian copy as #203, grid size 200,200,200,
    83142 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83143 Opened Single-MotA-ring.mrc gaussian copy as #204, grid size 200,200,200,
    83144 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83145 Opened Single-MotA-ring.mrc gaussian copy as #205, grid size 200,200,200,
    83146 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83147 Opened Single-MotA-ring.mrc gaussian copy as #206, grid size 200,200,200,
    83148 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83149 Opened Single-MotA-ring.mrc gaussian copy as #207, grid size 200,200,200,
    83150 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83151 Opened Single-MotA-ring.mrc gaussian copy as #208, grid size 200,200,200,
    83152 pixel 2.14, shown at level 0.000997, step 1, values float32 
    83153 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #214, grid size
    83154 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83155 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #215, grid size
    83156 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83157 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #216, grid size
    83158 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83159 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #217, grid size
    83160 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83161 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #218, grid size
    83162 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83163 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #219, grid size
    83164 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83165 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #220, grid size
    83166 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83167 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #221, grid size
    83168 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83169 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #222, grid size
    83170 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83171 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #223, grid size
    83172 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83173 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #224, grid size
    83174 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83175 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #225, grid size
    83176 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83177 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #226, grid size
    83178 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83179 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #227, grid size
    83180 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83181 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #228, grid size
    83182 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83183 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #229, grid size
    83184 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83185 Opened PflAB_wout_FlgYoverlap.mrc copy gaussian copy as #230, grid size
    83186 200,200,200, pixel 2.14, shown at level 0.00045, step 1, values float32 
    83187 Opened C17-FlgY_New.mrc gaussian as #231, grid size 256,256,256, pixel 2.14,
    83188 shown at level 0.0112, step 1, values float32 
    83189 Opened MS-ring_New_polished.mrc gaussian as #232, grid size 256,256,256, pixel
    83190 2.14, shown at level 0.00974, step 1, values float32 
    83191 Opened Basal_disk.mrc as #209, grid size 250,250,250, pixel 4.3, shown at
    83192 level 0.157, step 1, values float32 
    83193 Opened C-Vrings.mrc as #4, grid size 250,250,250, pixel 4.3, shown at level
    83194 0.0283, step 1, values float32 
    83195 Opened 1unit_PflABCD.mrc as #5, grid size 200,200,200, pixel 2.14, shown at
    83196 level 0.00404, step 1, values float32 
    83197 Opened 3xFlgY.mrc as #22, grid size 256,256,256, pixel 2.14, shown at level
    83198 0.0112, step 1, values float32 
    83199 Opened 1xPflB.mrc as #26, grid size 200,200,200, pixel 2.14, shown at level
    83200 0.00045, step 1, values float32 
    83201 Opened 1xFlgY.mrc as #29, grid size 256,256,256, pixel 2.14, shown at level
    83202 0.0112, step 1, values float32 
    83203 Opened 1xPflB.mrc as #30, grid size 200,200,200, pixel 2.14, shown at level
    83204 0.00045, step 1, values float32 
    83205 Opened PflC-model-region.mrc as #36, grid size 200,200,200, pixel 2.14, shown
    83206 at level 0.00107, step 1, values float32 
    83207 Opened PflC-No-model.mrc as #37, grid size 200,200,200, pixel 2.14, shown at
    83208 level 0.00107, step 1, values float32 
    83209 Opened PflC-No-model.mrc copy as #38, grid size 200,200,200, pixel 2.14, shown
    83210 at level 0.00107, step 1, values float32 
    83211 Opened PflC-No-model.mrc copy as #39, grid size 200,200,200, pixel 2.14, shown
    83212 at level 0.00107, step 1, values float32 
    83213 Opened PflC-No-model.mrc copy as #40, grid size 200,200,200, pixel 2.14, shown
    83214 at level 0.00107, step 1, values float32 
    83215 Opened PflC-No-model.mrc copy as #41, grid size 200,200,200, pixel 2.14, shown
    83216 at level 0.00107, step 1, values float32 
    83217 Opened PflC-No-model.mrc copy as #42, grid size 200,200,200, pixel 2.14, shown
    83218 at level 0.00107, step 1, values float32 
    83219 Opened PflC-No-model.mrc copy as #43, grid size 200,200,200, pixel 2.14, shown
    83220 at level 0.00107, step 1, values float32 
    83221 Opened PflC-No-model.mrc copy as #44, grid size 200,200,200, pixel 2.14, shown
    83222 at level 0.00107, step 1, values float32 
    83223 Opened PflC-No-model.mrc copy as #45, grid size 200,200,200, pixel 2.14, shown
    83224 at level 0.00107, step 1, values float32 
    83225 Opened PflC-No-model.mrc copy as #46, grid size 200,200,200, pixel 2.14, shown
    83226 at level 0.00107, step 1, values float32 
    83227 Opened PflC-No-model.mrc copy as #47, grid size 200,200,200, pixel 2.14, shown
    83228 at level 0.00107, step 1, values float32 
    83229 Opened PflC-No-model.mrc copy as #48, grid size 200,200,200, pixel 2.14, shown
    83230 at level 0.00107, step 1, values float32 
    83231 Opened PflC-No-model.mrc copy as #49, grid size 200,200,200, pixel 2.14, shown
    83232 at level 0.00107, step 1, values float32 
    83233 Opened PflC-No-model.mrc copy as #50, grid size 200,200,200, pixel 2.14, shown
    83234 at level 0.00107, step 1, values float32 
    83235 Opened PflC-No-model.mrc copy as #51, grid size 200,200,200, pixel 2.14, shown
    83236 at level 0.00107, step 1, values float32 
    83237 Opened PflC-No-model.mrc copy as #52, grid size 200,200,200, pixel 2.14, shown
    83238 at level 0.00107, step 1, values float32 
    83239 Opened PflC-No-model.mrc copy as #53, grid size 200,200,200, pixel 2.14, shown
    83240 at level 0.00107, step 1, values float32 
    83241 Opened Single_Cage_unit_imasked as #55, grid size 200,200,200, pixel 2.14,
    83242 shown at level 0.000576, step 1, values float32 
    83243 Opened Single_Cage_unit_imasked copy as #56, grid size 200,200,200, pixel
    83244 2.14, shown at level 0.000576, step 1, values float32 
    83245 Opened Single_Cage_unit_imasked copy as #57, grid size 200,200,200, pixel
    83246 2.14, shown at level 0.000576, step 1, values float32 
    83247 Opened Single_Cage_unit_imasked copy as #58, grid size 200,200,200, pixel
    83248 2.14, shown at level 0.000576, step 1, values float32 
    83249 Opened Single_Cage_unit_imasked copy as #59, grid size 200,200,200, pixel
    83250 2.14, shown at level 0.000576, step 1, values float32 
    83251 Opened Single_Cage_unit_imasked copy as #60, grid size 200,200,200, pixel
    83252 2.14, shown at level 0.000576, step 1, values float32 
    83253 Opened Single_Cage_unit_imasked copy as #61, grid size 200,200,200, pixel
    83254 2.14, shown at level 0.000576, step 1, values float32 
    83255 Opened Single_Cage_unit_imasked copy as #62, grid size 200,200,200, pixel
    83256 2.14, shown at level 0.000576, step 1, values float32 
    83257 Opened Single_Cage_unit_imasked copy as #63, grid size 200,200,200, pixel
    83258 2.14, shown at level 0.000576, step 1, values float32 
    83259 Opened Single_Cage_unit_imasked copy as #64, grid size 200,200,200, pixel
    83260 2.14, shown at level 0.000576, step 1, values float32 
    83261 Opened Single_Cage_unit_imasked copy as #65, grid size 200,200,200, pixel
    83262 2.14, shown at level 0.000576, step 1, values float32 
    83263 Opened Single_Cage_unit_imasked copy as #66, grid size 200,200,200, pixel
    83264 2.14, shown at level 0.000576, step 1, values float32 
    83265 Opened Single_Cage_unit_imasked copy as #67, grid size 200,200,200, pixel
    83266 2.14, shown at level 0.000576, step 1, values float32 
    83267 Opened Single_Cage_unit_imasked copy as #68, grid size 200,200,200, pixel
    83268 2.14, shown at level 0.000576, step 1, values float32 
    83269 Opened Single_Cage_unit_imasked copy as #69, grid size 200,200,200, pixel
    83270 2.14, shown at level 0.000576, step 1, values float32 
    83271 Opened Single_Cage_unit_imasked copy as #70, grid size 200,200,200, pixel
    83272 2.14, shown at level 0.000576, step 1, values float32 
    83273 Opened Single_Cage_unit_imasked copy as #71, grid size 200,200,200, pixel
    83274 2.14, shown at level 0.000576, step 1, values float32 
    83275 Opened Single_Cage_unit_imasked copy as #72, grid size 200,200,200, pixel
    83276 2.14, shown at level 0.000576, step 1, values float32 
    83277 Opened V-ring.mrc as #54, grid size 250,250,250, pixel 4.3, shown at level
    83278 0.0283, step 1, values float32 
    83279 opened ChimeraX session 
    83280 Showing C-Vrings.seg - 65 regions, 65 surfaces 
    83281 
    83282 > hide #!13 models
    83283 
    83284 > show #!13 models
    83285 
    83286 > hide #!13 models
    83287 
    83288 > hide #!13-300 models
    83289 
    83290 > hide #!3 models
    83291 
    83292 > show #!15 models
    83293 
    83294 > show #!25 models
    83295 
    83296 > hide #!15.1 models
    83297 
    83298 > hide #!15.2 models
    83299 
    83300 > hide #!15.3 models
    83301 
    83302 > hide #!15.4 models
    83303 
    83304 > hide #!15.5 models
    83305 
    83306 > hide #!15.7 models
    83307 
    83308 > hide #!15.8 models
    83309 
    83310 > hide #!15.9 models
    83311 
    83312 > show #!15.9 models
    83313 
    83314 > hide #!15.9 models
    83315 
    83316 > show #!15.7 models
    83317 
    83318 > hide #!15.7 models
    83319 
    83320 > show #!15.5 models
    83321 
    83322 > hide #15.5.6 models
    83323 
    83324 > hide #15.5.3 models
    83325 
    83326 > hide #15.5.2 models
    83327 
    83328 > hide #15.5.1 models
    83329 
    83330 > hide #!15.6 models
    83331 
    83332 > show #!15.6 models
    83333 
    83334 > hide #!15.10 models
    83335 
    83336 > hide #!15.11 models
    83337 
    83338 > hide #!15.12 models
    83339 
    83340 > hide #!15.13 models
    83341 
    83342 > hide #!15.14 models
    83343 
    83344 > hide #!15.15 models
    83345 
    83346 > hide #!15.16 models
    83347 
    83348 > hide #!15.17 models
    83349 
    83350 > hide #!25.1 models
    83351 
    83352 > hide #!25.2 models
    83353 
    83354 > hide #!25.3 models
    83355 
    83356 > hide #!25.4 models
    83357 
    83358 > hide #!25.5 models
    83359 
    83360 > hide #!25.7 models
    83361 
    83362 > hide #!25.8 models
    83363 
    83364 > hide #!25.9 models
    83365 
    83366 > hide #!25.10 models
    83367 
    83368 > hide #!25.11 models
    83369 
    83370 > hide #!25.12 models
    83371 
    83372 > hide #!25.13 models
    83373 
    83374 > hide #!25.14 models
    83375 
    83376 > hide #!25.15 models
    83377 
    83378 > hide #!25.16 models
    83379 
    83380 > hide #!25.17 models
    83381 
    83382 > select add #15.5.4
    83383 
    83384 1192 atoms, 149 residues, 1 model selected 
    83385 
    83386 > select add #15.5.5
    83387 
    83388 6295 atoms, 782 residues, 2 models selected 
    83389 
    83390 > select add #15.6
    83391 
    83392 20131 atoms, 14052 bonds, 1 pseudobond, 2495 residues, 5 models selected 
    83393 
    83394 > hide sel surfaces
    83395 
    83396 > show sel cartoons
    83397 
    83398 > select clear
    83399 
    83400 > select add #15.6.2
    83401 
    83402 1235 atoms, 155 residues, 1 model selected 
    83403 
    83404 > select add #15.6.3
    83405 
    83406 2470 atoms, 310 residues, 2 models selected 
    83407 
    83408 > hide sel cartoons
    83409 
    83410 > select clear
    83411 
    83412 > select add #25.6
    83413 
    83414 4626 atoms, 4670 bonds, 575 residues, 1 model selected 
    83415 
    83416 > hide sel surfaces
    83417 
    83418 > show sel cartoons
    83419 
    83420 > select clear
    83421 
    83422 > view orient
    83423 
    83424 > turn y 90
    83425 
    83426 > turn y -90
    83427 
    83428 > turn x -90
    83429 
    83430 > turn y -90
    83431 
    83432 > turn x -90
    83433 
    83434 > save /Users/shoichitachiyama/Desktop/Ext18-PflAB-1.png supersample 2
    83435 > transparentBackground true
    83436 
    83437 > turn x 40
    83438 
    83439 > turn x -40
    83440 
    83441 > save /Users/shoichitachiyama/Desktop/Ext18-PflAB-40.png supersample 2
    83442 > transparentBackground true
    83443 
    83444 > graphics silhouettes true
    83445 
    83446 > set bgColor white
    83447 
    83448 > set bgColor #ffffff00
    83449 
    83450 > graphics silhouettes false
    83451 
    83452 > graphics silhouettes true
    83453 
    83454 > save /Users/shoichitachiyama/Desktop/Ext18-PflAB-40.png supersample 2
    83455 > transparentBackground true
    83456 
    83457 > turn x 40
    83458 
    83459 > save /Users/shoichitachiyama/Desktop/Ext18-PflAB-1.png supersample 2
    83460 > transparentBackground true
    83461 
    83462 
    83463 ===== Log before crash end =====
    83464 
    83465 Log:
    83466 UCSF ChimeraX version: 1.8 (2024-06-10) 
    83467 © 2016-2024 Regents of the University of California. All rights reserved. 
    83468 
    83469 > open /Users/shoichitachiyama/Desktop/Shigella-ipaDnull-bin2-07072025.cxs
    83470 
    83471 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83472 0.0281, step 1, values float32 
    83473 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83474 level 0.0229, step 1, values float32 
    83475 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83476 level 0.0192, step 1, values float32 
    83477 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83478 level 0.0187, step 1, values float32 
    83479 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83480 at level 0.0194, step 1, values float32 
    83481 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83482 0.042, step 1, values float32 
    83483 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83484 level 0.0181, step 1, values float32 
    83485 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83486 shown at level 0.0549, step 1, values float32 
    83487 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83488 at level 0.0143, step 1, values float32 
    83489 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83490 shown at level 0.019, step 1, values float32 
    83491 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83492 shown at level 0.012, step 1, values float32 
    83493 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83494 shown at level 0.0123, step 1, values float32 
    83495 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83496 at level 0.0168, step 1, values float32 
    83497 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83498 shown at level 0.0154, step 1, values float32 
    83499 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83500 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83501 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83502 level 0.0701, step 1, values float32 
    83503 Opened Rev-Spa47C24.mrc as #25, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83504 at level 0.238, step 1, values float32 
    83505 Opened IMring.mrc as #32, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    83506 level 0.0343, step 1, values float32 
    83507 Opened OM-complex.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83508 at level 0.0252, step 1, values float32 
    83509 Opened Pod-bin2.mrc as #13, grid size 50,50,70, pixel 4.3,4.3,4.3, shown at
    83510 level 0.0536, step 1, values float32 
    83511 Opened Exp.mrc as #33, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at level
    83512 0.0282, step 1, values float32 
    83513 Log from Tue Jul 8 20:43:49 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83514 © 2016-2024 Regents of the University of California. All rights reserved. 
    83515 
    83516 > open /Users/shoichitachiyama/Desktop/Shigella-ipaDnull-bin2-07072025.cxs
    83517 
    83518 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83519 0.0281, step 1, values float32 
    83520 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83521 level 0.0229, step 1, values float32 
    83522 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83523 level 0.0192, step 1, values float32 
    83524 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83525 level 0.0187, step 1, values float32 
    83526 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83527 at level 0.0194, step 1, values float32 
    83528 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83529 0.042, step 1, values float32 
    83530 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83531 level 0.0181, step 1, values float32 
    83532 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83533 shown at level 0.0549, step 1, values float32 
    83534 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83535 at level 0.0143, step 1, values float32 
    83536 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83537 shown at level 0.019, step 1, values float32 
    83538 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83539 shown at level 0.012, step 1, values float32 
    83540 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83541 shown at level 0.0123, step 1, values float32 
    83542 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83543 at level 0.0168, step 1, values float32 
    83544 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83545 shown at level 0.0154, step 1, values float32 
    83546 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83547 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83548 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83549 level 0.0701, step 1, values float32 
    83550 Opened Rev-Spa47C24.mrc as #25, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83551 at level 0.238, step 1, values float32 
    83552 Opened IMring.mrc as #32, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    83553 level 0.0343, step 1, values float32 
    83554 Opened OM-complex.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83555 at level 0.0252, step 1, values float32 
    83556 Opened Pod-bin2.mrc as #13, grid size 50,50,70, pixel 4.3,4.3,4.3, shown at
    83557 level 0.0536, step 1, values float32 
    83558 Opened Exp.mrc as #33, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at level
    83559 0.0282, step 1, values float32 
    83560 Log from Mon Jul 7 21:04:45 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83561 © 2016-2024 Regents of the University of California. All rights reserved. 
    83562 
    83563 > open "/Volumes/Lab Backup/Jun Liu Lab 2025/Project files/Shigella/MxiA-
    83564 > project/Data_Images/07072025/Shigella-ipaDnull-bin2-06252025.cxs"
    83565 
    83566 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83567 0.0281, step 1, values float32 
    83568 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83569 level 0.0229, step 1, values float32 
    83570 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83571 level 0.0192, step 1, values float32 
    83572 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83573 level 0.0187, step 1, values float32 
    83574 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83575 at level 0.0194, step 1, values float32 
    83576 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83577 0.042, step 1, values float32 
    83578 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83579 level 0.0181, step 1, values float32 
    83580 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83581 shown at level 0.0549, step 1, values float32 
    83582 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83583 at level 0.0143, step 1, values float32 
    83584 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83585 shown at level 0.019, step 1, values float32 
    83586 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83587 shown at level 0.012, step 1, values float32 
    83588 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83589 shown at level 0.0123, step 1, values float32 
    83590 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83591 at level 0.0168, step 1, values float32 
    83592 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83593 shown at level 0.0154, step 1, values float32 
    83594 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83595 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83596 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83597 level 0.0701, step 1, values float32 
    83598 Opened Rev-Spa47C24.mrc as #25, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83599 at level 0.238, step 1, values float32 
    83600 Opened IMring.mrc as #32, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    83601 level 0.0343, step 1, values float32 
    83602 Opened OM-complex.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83603 at level 0.0252, step 1, values float32 
    83604 Opened Pod-bin2.mrc as #13, grid size 50,50,70, pixel 4.3,4.3,4.3, shown at
    83605 level 0.0536, step 1, values float32 
    83606 Opened Exp.mrc as #33, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at level
    83607 0.0282, step 1, values float32 
    83608 Log from Wed Jun 25 10:52:06 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83609 © 2016-2024 Regents of the University of California. All rights reserved. 
    83610 
    83611 > open /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06232025.cxs
    83612 
    83613 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83614 0.0281, step 1, values float32 
    83615 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83616 level 0.0229, step 1, values float32 
    83617 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83618 level 0.0192, step 1, values float32 
    83619 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83620 level 0.0187, step 1, values float32 
    83621 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83622 at level 0.0194, step 1, values float32 
    83623 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83624 0.042, step 1, values float32 
    83625 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83626 level 0.0181, step 1, values float32 
    83627 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83628 shown at level 0.0549, step 1, values float32 
    83629 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83630 at level 0.0143, step 1, values float32 
    83631 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83632 shown at level 0.019, step 1, values float32 
    83633 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83634 shown at level 0.012, step 1, values float32 
    83635 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83636 shown at level 0.0123, step 1, values float32 
    83637 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83638 at level 0.0168, step 1, values float32 
    83639 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83640 shown at level 0.0154, step 1, values float32 
    83641 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83642 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83643 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83644 level 0.0701, step 1, values float32 
    83645 Opened Rev-Spa47C24.mrc as #25, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83646 at level 0.238, step 1, values float32 
    83647 Opened IMring.mrc as #32, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    83648 level 0.0343, step 1, values float32 
    83649 Opened OM-complex.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83650 at level 0.0252, step 1, values float32 
    83651 Opened Pod-bin2.mrc as #13, grid size 50,50,70, pixel 4.3,4.3,4.3, shown at
    83652 level 0.0536, step 1, values float32 
    83653 Log from Mon Jun 23 16:35:51 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83654 © 2016-2024 Regents of the University of California. All rights reserved. 
    83655 
    83656 > open /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06232025.cxs
    83657 
    83658 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83659 0.0281, step 1, values float32 
    83660 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83661 level 0.0229, step 1, values float32 
    83662 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83663 level 0.0192, step 1, values float32 
    83664 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83665 level 0.0187, step 1, values float32 
    83666 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83667 at level 0.0194, step 1, values float32 
    83668 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83669 0.042, step 1, values float32 
    83670 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83671 level 0.0181, step 1, values float32 
    83672 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83673 shown at level 0.0549, step 1, values float32 
    83674 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83675 at level 0.0143, step 1, values float32 
    83676 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83677 shown at level 0.019, step 1, values float32 
    83678 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83679 shown at level 0.012, step 1, values float32 
    83680 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83681 shown at level 0.0123, step 1, values float32 
    83682 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83683 at level 0.0168, step 1, values float32 
    83684 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83685 shown at level 0.0154, step 1, values float32 
    83686 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83687 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83688 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83689 level 0.0701, step 1, values float32 
    83690 Opened Rev-Spa47C24.mrc as #25, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83691 at level 0.238, step 1, values float32 
    83692 Opened IMring.mrc as #32, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    83693 level 0.0343, step 1, values float32 
    83694 Opened OM-complex.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83695 at level 0.0252, step 1, values float32 
    83696 Log from Mon Jun 23 14:56:34 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83697 © 2016-2024 Regents of the University of California. All rights reserved. 
    83698 
    83699 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    83700 > YaleUniversity/Jun_Lab_documents/Websites/Shigella-ipaDnull-
    83701 > bin2-06202025.cxs
    83702 
    83703 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83704 0.0281, step 1, values float32 
    83705 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83706 level 0.0229, step 1, values float32 
    83707 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83708 level 0.0192, step 1, values float32 
    83709 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83710 level 0.0187, step 1, values float32 
    83711 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83712 at level 0.0194, step 1, values float32 
    83713 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83714 0.042, step 1, values float32 
    83715 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83716 level 0.0181, step 1, values float32 
    83717 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83718 shown at level 0.0549, step 1, values float32 
    83719 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83720 at level 0.0143, step 1, values float32 
    83721 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83722 shown at level 0.019, step 1, values float32 
    83723 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83724 shown at level 0.012, step 1, values float32 
    83725 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83726 shown at level 0.0123, step 1, values float32 
    83727 Opened OM_complex.mrc gaussian as #13, grid size 120,120,200, pixel
    83728 4.3,4.3,4.3, shown at level 0.00993, step 1, values float32 
    83729 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83730 at level 0.0168, step 1, values float32 
    83731 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83732 shown at level 0.0154, step 1, values float32 
    83733 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83734 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83735 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83736 level 0.0701, step 1, values float32 
    83737 Opened Rev-Spa47C24.mrc as #25, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    83738 at level 0.238, step 1, values float32 
    83739 Opened MxiGp.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    83740 level 0.0622, step 1, values float32 
    83741 Log from Fri Jun 20 11:47:25 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83742 © 2016-2024 Regents of the University of California. All rights reserved. 
    83743 
    83744 > set bgColor #ffffff00
    83745 
    83746 Log from Mon Jun 16 14:12:56 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83747 © 2016-2024 Regents of the University of California. All rights reserved. 
    83748 
    83749 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    83750 > YaleUniversity/Jun_Lab_documents/Websites/Shigella-ipaDnull-
    83751 > bin2-06142025.cxs
    83752 
    83753 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83754 0.0281, step 1, values float32 
    83755 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83756 level 0.0229, step 1, values float32 
    83757 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83758 level 0.0192, step 1, values float32 
    83759 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83760 level 0.0187, step 1, values float32 
    83761 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83762 at level 0.0194, step 1, values float32 
    83763 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83764 0.042, step 1, values float32 
    83765 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83766 level 0.0181, step 1, values float32 
    83767 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83768 shown at level 0.0549, step 1, values float32 
    83769 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83770 at level 0.0143, step 1, values float32 
    83771 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83772 shown at level 0.019, step 1, values float32 
    83773 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83774 shown at level 0.012, step 1, values float32 
    83775 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83776 shown at level 0.0123, step 1, values float32 
    83777 Opened OM_complex.mrc gaussian as #13, grid size 120,120,200, pixel
    83778 4.3,4.3,4.3, shown at level 0.00993, step 1, values float32 
    83779 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83780 at level 0.0168, step 1, values float32 
    83781 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83782 shown at level 0.0154, step 1, values float32 
    83783 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83784 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83785 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83786 level 0.0701, step 1, values float32 
    83787 Log from Mon Jun 16 11:13:56 2025UCSF ChimeraX version: 1.8 (2024-06-10) 
    83788 © 2016-2024 Regents of the University of California. All rights reserved. 
    83789 
    83790 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    83791 > YaleUniversity/Jun_Lab_documents/Websites/Shigella-ipaDnull-
    83792 > bin2-06142025.cxs
    83793 
    83794 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83795 0.0281, step 1, values float32 
    83796 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83797 level 0.0229, step 1, values float32 
    83798 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83799 level 0.0192, step 1, values float32 
    83800 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83801 level 0.0187, step 1, values float32 
    83802 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83803 at level 0.0194, step 1, values float32 
    83804 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83805 0.042, step 1, values float32 
    83806 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83807 level 0.0181, step 1, values float32 
    83808 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83809 shown at level 0.0549, step 1, values float32 
    83810 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83811 at level 0.0143, step 1, values float32 
    83812 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83813 shown at level 0.019, step 1, values float32 
    83814 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83815 shown at level 0.012, step 1, values float32 
    83816 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83817 shown at level 0.0123, step 1, values float32 
    83818 Opened OM_complex.mrc gaussian as #13, grid size 120,120,200, pixel
    83819 4.3,4.3,4.3, shown at level 0.00993, step 1, values float32 
    83820 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83821 at level 0.0168, step 1, values float32 
    83822 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83823 shown at level 0.0154, step 1, values float32 
    83824 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    83825 4.3,4.3,4.3, shown at level 0.0307, step 1, values float32 
    83826 Log from Sat Jun 14 20:42:38 2025 Startup Messages 
    83827 --- 
    83828 note | available bundle cache has not been initialized yet 
    83829  
    83830 UCSF ChimeraX version: 1.8 (2024-06-10) 
    83831 © 2016-2024 Regents of the University of California. All rights reserved. 
    83832 How to cite UCSF ChimeraX 
    83833 
    83834 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83835 > YaleUniversity/Jun_Lab_documents/Project-
    83836 > documents/P_aeruginosa_T4pili/PDB/3jvu.pdb1 format pdb
    83837 
    83838 3jvu.pdb1 title: 
    83839 Crystal structure of unliganded P. Aeruginosa pilt [more info...] 
    83840  
    83841 Chain information for 3jvu.pdb1 
    83842 --- 
    83843 Chain | Description 
    83844 1.1/A 1.1/B 1.1/C | No description available 
    83845 1.2/A | No description available 
    83846 1.2/B | No description available 
    83847 1.2/C | No description available 
    83848  
    83849 
    83850 > close #1
    83851 
    83852 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83853 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83854 > Projects/Project-with-Bill/Ownwork/06132025/Segmentation-06132025/IM.mrc
    83855 
    83856 Opened IM.mrc as #1, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83857 0.0612, step 1, values float32 
    83858 
    83859 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83860 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83861 > Projects/Project-with-Bill/Ownwork/06132025/Segmentation-06132025/MxiA.mrc
    83862 
    83863 Opened MxiA.mrc as #2, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83864 level 0.0183, step 1, values float32 
    83865 
    83866 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83867 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83868 > Projects/Project-with-Bill/Ownwork/06132025/Segmentation-06132025/MxiGp.mrc
    83869 
    83870 Opened MxiGp.mrc as #3, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83871 level 0.0192, step 1, values float32 
    83872 
    83873 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83874 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83875 > Projects/Project-with-Bill/Ownwork/06132025/Segmentation-06132025/Needle.mrc
    83876 
    83877 Opened Needle.mrc as #4, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83878 level 0.0187, step 1, values float32 
    83879 
    83880 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83881 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83882 > Projects/Project-with-
    83883 > Bill/Ownwork/06132025/Segmentation-06132025/OM_complex.mrc
    83884 
    83885 Opened OM_complex.mrc as #5, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83886 at level 0.0194, step 1, values float32 
    83887 
    83888 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83889 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83890 > Projects/Project-with-Bill/Ownwork/06132025/Segmentation-06132025/OM.mrc
    83891 
    83892 Opened OM.mrc as #6, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at level
    83893 0.0796, step 1, values float32 
    83894 
    83895 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83896 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83897 > Projects/Project-with-Bill/Ownwork/06132025/Segmentation-06132025/PG-
    83898 > layer.mrc
    83899 
    83900 Opened PG-layer.mrc as #7, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    83901 level 0.0181, step 1, values float32 
    83902 
    83903 > open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
    83904 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    83905 > Projects/Project-with-
    83906 > Bill/Ownwork/06132025/Segmentation-06132025/Sortingplatforom.mrc
    83907 
    83908 Opened Sortingplatforom.mrc as #8, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83909 shown at level 0.0549, step 1, values float32 
    83910 
    83911 > volume #6 level 0.042
    83912 
    83913 > volume #1 level 0.02813
    83914 
    83915 > volume #2 level 0.02289
    83916 
    83917 > volume gaussian #1 sDev 6
    83918 
    83919 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83920 at step 1, values float32 
    83921 
    83922 > volume #9 level 0.02861
    83923 
    83924 > close #9
    83925 
    83926 > volume gaussian #1 sDev 8
    83927 
    83928 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83929 at step 1, values float32 
    83930 
    83931 > volume #9 level 0.01651
    83932 
    83933 > close #9
    83934 
    83935 > volume gaussian #1 sDev 7
    83936 
    83937 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83938 at step 1, values float32 
    83939 
    83940 > volume #9 level 0.01537
    83941 
    83942 > close #9
    83943 
    83944 > volume gaussian #1 sDev 6
    83945 
    83946 Opened IM.mrc gaussian as #9, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    83947 at step 1, values float32 
    83948 
    83949 > volume #9 level 0.01427
    83950 
    83951 > volume gaussian #2 sDev 4
    83952 
    83953 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83954 shown at step 1, values float32 
    83955 
    83956 > hide #!4 models
    83957 
    83958 > hide #!5 models
    83959 
    83960 > hide #!6 models
    83961 
    83962 > hide #!7 models
    83963 
    83964 > hide #!8 models
    83965 
    83966 > hide #!9 models
    83967 
    83968 > volume #10 level 0.01869
    83969 
    83970 > volume #10 level 0.02009
    83971 
    83972 > close #10
    83973 
    83974 > volume gaussian #2 sDev 5
    83975 
    83976 Opened MxiA.mrc gaussian as #10, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83977 shown at step 1, values float32 
    83978 
    83979 > volume #10 level 0.01905
    83980 
    83981 > hide #!3 models
    83982 
    83983 > show #!9 models
    83984 
    83985 > volume gaussian #3 sDev 3
    83986 
    83987 Opened MxiGp.mrc gaussian as #11, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83988 shown at step 1, values float32 
    83989 
    83990 > volume #11 level 0.01197
    83991 
    83992 > volume gaussian #4 sDev 3
    83993 
    83994 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    83995 shown at step 1, values float32 
    83996 
    83997 > close #12
    83998 
    83999 > volume gaussian #4 sDev 4
    84000 
    84001 Opened Needle.mrc gaussian as #12, grid size 120,120,200, pixel 4.3,4.3,4.3,
    84002 shown at step 1, values float32 
    84003 
    84004 > volume gaussian #5 sDev 3
    84005 
    84006 Opened OM_complex.mrc gaussian as #13, grid size 120,120,200, pixel
    84007 4.3,4.3,4.3, shown at step 1, values float32 
    84008 
    84009 > volume #13 level 0.01105
    84010 
    84011 > volume #13 level 0.009929
    84012 
    84013 > volume gaussian #6 sDev 6
    84014 
    84015 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    84016 at step 1, values float32 
    84017 
    84018 > volume #14 level 0.01435
    84019 
    84020 > hide #!13 models
    84021 
    84022 > hide #!14 models
    84023 
    84024 > show #!14 models
    84025 
    84026 > show #!13 models
    84027 
    84028 > hide #!13 models
    84029 
    84030 > hide #!12 models
    84031 
    84032 > hide #!11 models
    84033 
    84034 > hide #!10 models
    84035 
    84036 > hide #!9 models
    84037 
    84038 > close #14
    84039 
    84040 > volume gaussian #6 sDev 4
    84041 
    84042 Opened OM.mrc gaussian as #14, grid size 120,120,200, pixel 4.3,4.3,4.3, shown
    84043 at step 1, values float32 
    84044 
    84045 > volume #14 level 0.01677
    84046 
    84047 > show #!13 models
    84048 
    84049 > show #!12 models
    84050 
    84051 > show #!11 models
    84052 
    84053 > show #!10 models
    84054 
    84055 > show #!9 models
    84056 
    84057 > volume gaussian #7 sDev 7
    84058 
    84059 Opened PG-layer.mrc gaussian as #15, grid size 120,120,200, pixel 4.3,4.3,4.3,
    84060 shown at step 1, values float32 
    84061 
    84062 > volume #15 level 0.008469
    84063 
    84064 > volume #15 level 0.007741
    84065 
    84066 > volume gaussian #8 sDev 3
    84067 
    84068 Opened Sortingplatforom.mrc gaussian as #16, grid size 120,120,200, pixel
    84069 4.3,4.3,4.3, shown at step 1, values float32 
    84070 
    84071 > volume #16 level 0.03071
    84072 
    84073 > hide #!10 models
    84074 
    84075 > hide #!11 models
    84076 
    84077 > hide #!12 models
    84078 
    84079 > hide #!13 models
    84080 
    84081 > hide #!14 models
    84082 
    84083 > hide #!15 models
    84084 
    84085 > hide #!16 models
    84086 
    84087 > ui tool show "Map Eraser"
    84088 
    84089 > volume erase #9 center 263.81,249.82,417.98 radius 252.84 outside true
    84090 
    84091 > hide #!9 models
    84092 
    84093 > show #!10 models
    84094 
    84095 > show #!11 models
    84096 
    84097 > hide #!10 models
    84098 
    84099 > volume erase #11 center 258.49,255.15,458.12 radius 139.62 outside true
    84100 
    84101 > hide #!11 models
    84102 
    84103 > show #!12 models
    84104 
    84105 > volume erase #12 center 251.54,257.07,627.55 radius 287.83 outside true
    84106 
    84107 > volume erase #12 center 258.68,253.74,636.22 radius 231.55 outside true
    84108 
    84109 > volume erase #12 center 498.26,102.07,654.82 radius 231.55
    84110 
    84111 > volume erase #12 center 111.84,-21.873,673.18 radius 231.55
    84112 
    84113 > volume erase #12 center -38.399,336.09,692.01 radius 231.55
    84114 
    84115 > volume erase #12 center 237.28,549.79,682.51 radius 231.55
    84116 
    84117 > volume erase #12 center 517.18,437.76,663.41 radius 231.55
    84118 
    84119 > hide #!12 models
    84120 
    84121 > show #!13 models
    84122 
    84123 > volume erase #13 center 253.69,256.32,584.2 radius 137.9 outside true
    84124 
    84125 > volume erase #13 center 255.86,257.72,593.03 radius 123.72 outside true
    84126 
    84127 > volume erase #13 center 62.838,165.03,546.6 radius 123.72
    84128 
    84129 > volume erase #13 center 157.44,53.683,556.3 radius 123.72
    84130 
    84131 > volume erase #13 center 371.56,78.194,534.46 radius 123.72
    84132 
    84133 > volume erase #13 center 271.6,33.37,562.14 radius 123.72
    84134 
    84135 > volume erase #13 center 248.79,478.96,556.65 radius 123.72
    84136 
    84137 > volume erase #13 center 391.45,445.69,544.2 radius 123.72
    84138 
    84139 > volume erase #13 center 455.75,362.69,544.33 radius 123.72
    84140 
    84141 > volume erase #13 center 488.44,278.1,567.07 radius 123.72
    84142 
    84143 > volume erase #13 center 415.07,408.18,553.07 radius 123.72
    84144 
    84145 > volume erase #13 center 121,442.2,575.18 radius 123.72
    84146 
    84147 > hide #!13 models
    84148 
    84149 > show #!14 models
    84150 
    84151 > show #!15 models
    84152 
    84153 > hide #!14 models
    84154 
    84155 > volume erase #15 center 250.39,261.22,597.71 radius 187.74 outside true
    84156 
    84157 > volume #15 level 0.01538
    84158 
    84159 > show #!16 models
    84160 
    84161 > hide #!15 models
    84162 
    84163 > show #!15 models
    84164 
    84165 > show #!14 models
    84166 
    84167 > show #!13 models
    84168 
    84169 > show #!11 models
    84170 
    84171 > show #!12 models
    84172 
    84173 > show #!10 models
    84174 
    84175 > show #!9 models
    84176 
    84177 > color #15 #9a9a9aff models
    84178 
    84179 > color #15 #717171ff models
    84180 
    84181 > lighting soft
    84182 
    84183 > set bgColor white
    84184 
    84185 > graphics silhouettes true
    84186 
    84187 > close #17
    84188 
    84189 > color #9 #cfffcaff models
    84190 
    84191 > color #9 #c5ffbfff models
    84192 
    84193 > color #9 #9ac795ff models
    84194 
    84195 > color #14 #8ad5a8ff models
    84196 
    84197 > color #14 #9ad5acff models
    84198 
    84199 > color #14 #9ad5adff models
    84200 
    84201 > color #11 #81daffff models
    84202 
    84203 > color #11 #86d8ffff models
    84204 
    84205 > color #13 #5fabebff models
    84206 
    84207 > color #16 #ffa978ff models
    84208 
    84209 > view orient
    84210 
    84211 > turn x 90
    84212 
    84213 [Repeated 2 time(s)]
    84214 
    84215 > view name P1
    84216 
    84217 > view P1
    84218 
    84219 > wait 10
    84220 
    84221 > turn -x 1 360 center #12
    84222 
    84223 > wait 360
    84224 
    84225 > view P1
    84226 
    84227 > wait 10
    84228 
    84229 > turn -y 1 360 center #12
    84230 
    84231 > wait 360
    84232 
    84233 > view P1
    84234 
    84235 > wait 10
    84236 
    84237 > turn -y 1 360 center #12
    84238 
    84239 > wait 360
    84240 
    84241 > view P1
    84242 
    84243 > wait 1
    84244 
    84245 > turn -y 1 360 center #12
    84246 
    84247 > wait 360
    84248 
    84249 > view P1
    84250 
    84251 > wait 1
    84252 
    84253 > turn -y 1 360 center #12
    84254 
    84255 > wait 720
    84256 
    84257 > save /Users/shoichitachiyama/Desktop/Shigella-ipaDnull-bin2-06142025.cxs
    84258 > includeMaps true
    84259 
    84260 ——— End of log from Sat Jun 14 20:42:38 2025 ———
    84261 
    84262 opened ChimeraX session 
    84263 
    84264 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    84265 > YaleUniversity/Jun_Lab_documents/Websites/Shigella-Model_2025.pdb
    84266 
    84267 Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
    84268 YaleUniversity/Jun_Lab_documents/Websites/Shigella-Model_2025.pdb 
    84269 --- 
    84270 warnings | Start residue of secondary structure not found: HELIX 1 1 THR A 11 THR A 23 1 13 
    84271 Start residue of secondary structure not found: HELIX 2 2 GLN A 24 ASN A 40 1
    84272 17 
    84273 Start residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1
    84274 39 
    84275 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    84276 13 
    84277 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    84278 17 
    84279 135 messages similar to the above omitted 
    84280 End residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1 39 
    84281 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    84282 13 
    84283 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    84284 17 
    84285 Start residue of secondary structure not found: HELIX 6 6 ASN B 43 ASN B 81 1
    84286 39 
    84287 Start residue of secondary structure not found: HELIX 7 7 THR C 11 THR C 23 1
    84288 13 
    84289 Start residue of secondary structure not found: HELIX 8 8 GLN C 24 ASN C 40 1
    84290 17 
    84291 63 messages similar to the above omitted 
    84292 End residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1 39 
    84293 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    84294 13 
    84295 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    84296 17 
    84297 Start residue of secondary structure not found: HELIX 6 6 ASN B 43 ASN B 81 1
    84298 39 
    84299 Start residue of secondary structure not found: HELIX 7 7 THR C 11 THR C 23 1
    84300 13 
    84301 Start residue of secondary structure not found: HELIX 8 8 GLN C 24 ASN C 40 1
    84302 17 
    84303 63 messages similar to the above omitted 
    84304 End residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1 39 
    84305 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    84306 13 
    84307 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    84308 17 
    84309 Start residue of secondary structure not found: HELIX 6 6 ASN B 43 ASN B 81 1
    84310 39 
    84311 Start residue of secondary structure not found: HELIX 7 7 THR C 11 THR C 23 1
    84312 13 
    84313 Start residue of secondary structure not found: HELIX 8 8 GLN C 24 ASN C 40 1
    84314 17 
    84315 63 messages similar to the above omitted 
    84316 End residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1 39 
    84317 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    84318 13 
    84319 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    84320 17 
    84321 Start residue of secondary structure not found: HELIX 6 6 ASN B 43 ASN B 81 1
    84322 39 
    84323 Start residue of secondary structure not found: HELIX 7 7 THR C 11 THR C 23 1
    84324 13 
    84325 Start residue of secondary structure not found: HELIX 8 8 GLN C 24 ASN C 40 1
    84326 17 
    84327 63 messages similar to the above omitted 
    84328 End residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1 39 
    84329 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    84330 13 
    84331 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    84332 17 
    84333 Start residue of secondary structure not found: HELIX 6 6 ASN B 43 ASN B 81 1
    84334 39 
    84335 Start residue of secondary structure not found: HELIX 7 7 THR C 11 THR C 23 1
    84336 13 
    84337 Start residue of secondary structure not found: HELIX 8 8 GLN C 24 ASN C 40 1
    84338 17 
    84339 63 messages similar to the above omitted 
    84340 End residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1 39 
    84341 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    84342 13 
    84343 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    84344 17 
    84345 Start residue of secondary structure not found: HELIX 6 6 ASN B 43 ASN B 81 1
    84346 39 
    84347 Start residue of secondary structure not found: HELIX 7 7 THR C 11 THR C 23 1
    84348 13 
    84349 Start residue of secondary structure not found: HELIX 8 8 GLN C 24 ASN C 40 1
    84350 17 
    84351 6340 messages similar to the above omitted 
    84352  
    84353 Shigella-Model_2025.pdb title: 
    84354 Structure of the shigella mxih needle filament attached to the basal body
    84355 [more info...] 
    84356  
    84357 21 atoms have alternate locations. Control/examine alternate locations with
    84358 Altloc Explorer [start tool...] or the altlocs command. 
    84359 Chain information for Shigella-Model_2025.pdb 
    84360 --- 
    84361 Chain | Description | UniProt 
    84362 17.3/0 17.3/1 17.3/2 17.3/3 17.3/4 17.3/5 17.3/6 17.3/7 17.3/8 17.3/9 17.3/Y 17.3/Z 17.3/a0 17.3/b0 17.3/y 17.3/z | No description available |   
    84363 17.1/A 17.1/B 17.1/C 17.1/D 17.1/E 17.1/F 17.1/G 17.1/H 17.1/I 17.1/J 17.1/K 17.1/L 17.1/M 17.1/N 17.1/O 17.1/P 17.1/Q 17.1/R 17.1/S 17.1/T 17.1/U 17.1/V 17.1/W | protein mxih | MXIH_SHIFL 1-83 
    84364 17.2/A 17.2/B 17.2/C 17.2/D 17.2/E 17.2/F 17.2/G 17.2/H 17.2/I 17.2/J 17.2/K 17.2/L 17.2/M 17.2/N 17.2/O | protein mxih | MXIH_SHIFL 1-83 
    84365 17.3/A 17.3/B 17.3/D 17.3/E 17.3/G 17.3/H 17.3/J 17.3/K 17.3/M 17.3/N 17.3/P 17.3/Q 17.3/S 17.3/T 17.3/U 17.3/V | protein mxih | MXIH_SHIFL 1-83 
    84366 17.4/A 17.5/A 17.6/A 17.7/A 17.8/A 17.9/A | protein mxih | MXIH_SHIFL 1-83 
    84367 17.76/A 17.77/A 17.78/A 17.79/A 17.80/A 17.81/A 17.76/B 17.77/B 17.78/B 17.79/B 17.80/B 17.81/B | protein mxih | MXIH_SHIFL 1-83 
    84368 17.82/A 17.84/A 17.86/A 17.88/A 17.90/A 17.92/A 17.83/B 17.85/B 17.87/B 17.89/B 17.91/B 17.93/B | protein mxih | MXIH_SHIFL 1-83 
    84369 17.94/A 17.94/D 17.94/G | protein mxih | MXIH_SHIFL 1-83 
    84370 17.10/Aa 17.11/Ab 17.12/Ac 17.13/Ad 17.14/Ae 17.15/Af 17.16/Ag 17.17/Ah 17.18/Ai 17.19/Aj 17.20/Ak 17.21/Al 17.22/Am 17.23/An 17.24/Ao 17.25/Ap 17.26/Aq 17.27/Ar 17.28/As 17.29/At 17.30/Au 17.31/Av 17.32/Aw 17.33/Ax | No description available |   
    84371 17.34/Ay 17.36/Ba 17.37/Bb 17.38/Bc 17.39/Bd 17.41/Bf 17.42/Bg 17.43/Bh 17.44/Bi 17.46/Bk 17.47/Bl 17.48/Bm 17.49/Bn 17.51/Bp 17.52/Bq 17.53/Br 17.54/Bs 17.56/Bu 17.57/Bv 17.58/Bw 17.59/Bx 17.61/Bz 17.62/Ca 17.63/Cb | No description available |   
    84372 17.35/Az 17.95/Az 17.40/Be 17.96/Be 17.45/Bj 17.97/Bj 17.50/Bo 17.98/Bo 17.55/Bt 17.99/Bt 17.60/By 17.100/By | No description available |   
    84373 17.94/B 17.94/E 17.94/H | protein mxih | MXIH_SHIFL 1-83 
    84374 17.64/Bk 17.65/Bk 17.66/Bk 17.67/Bk 17.68/Bk 17.69/Bk 17.70/Bk 17.71/Bk 17.72/Bk 17.73/Bk 17.74/Bk 17.75/Bk | No description available |   
    84375 17.3/C 17.3/F 17.3/I 17.3/L 17.3/O 17.3/R 17.3/W | protein mxih | MXIH_SHIFL 1-83 
    84376 17.76/C 17.77/C 17.78/C 17.79/C 17.80/C 17.81/C | protein mxih | MXIH_SHIFL 1-83 
    84377 17.94/C 17.94/F 17.94/I | protein mxih | MXIH_SHIFL 1-83 
    84378 17.3/X | No description available |   
    84379 17.3/a 17.3/b 17.3/c 17.3/d 17.3/e 17.3/f 17.3/g 17.3/h 17.3/i 17.3/j 17.3/k 17.3/l 17.3/m 17.3/n 17.3/o 17.3/p 17.3/q 17.3/r 17.3/s 17.3/t 17.3/u 17.3/v 17.3/w 17.3/x | No description available |   
    84380  
    84381 
    84382 > combine #17
    84383 
    84384 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.2 to 'X' 
    84385 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.2 to 'Y' 
    84386 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.2 to 'Z' 
    84387 Remapping chain ID 'D' in Shigella-Model_2025.pdb #17.2 to 'a' 
    84388 Remapping chain ID 'E' in Shigella-Model_2025.pdb #17.2 to 'b' 
    84389 Remapping chain ID 'F' in Shigella-Model_2025.pdb #17.2 to 'c' 
    84390 Remapping chain ID 'G' in Shigella-Model_2025.pdb #17.2 to 'd' 
    84391 Remapping chain ID 'H' in Shigella-Model_2025.pdb #17.2 to 'e' 
    84392 Remapping chain ID 'I' in Shigella-Model_2025.pdb #17.2 to 'f' 
    84393 Remapping chain ID 'J' in Shigella-Model_2025.pdb #17.2 to 'g' 
    84394 Remapping chain ID 'K' in Shigella-Model_2025.pdb #17.2 to 'h' 
    84395 Remapping chain ID 'L' in Shigella-Model_2025.pdb #17.2 to 'i' 
    84396 Remapping chain ID 'M' in Shigella-Model_2025.pdb #17.2 to 'j' 
    84397 Remapping chain ID 'N' in Shigella-Model_2025.pdb #17.2 to 'k' 
    84398 Remapping chain ID 'O' in Shigella-Model_2025.pdb #17.2 to 'l' 
    84399 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.3 to 'AA' 
    84400 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.3 to 'AB' 
    84401 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.3 to 'AC' 
    84402 Remapping chain ID 'D' in Shigella-Model_2025.pdb #17.3 to 'AD' 
    84403 Remapping chain ID 'E' in Shigella-Model_2025.pdb #17.3 to 'AE' 
    84404 Remapping chain ID 'F' in Shigella-Model_2025.pdb #17.3 to 'AF' 
    84405 Remapping chain ID 'G' in Shigella-Model_2025.pdb #17.3 to 'AG' 
    84406 Remapping chain ID 'H' in Shigella-Model_2025.pdb #17.3 to 'AH' 
    84407 Remapping chain ID 'I' in Shigella-Model_2025.pdb #17.3 to 'AI' 
    84408 Remapping chain ID 'J' in Shigella-Model_2025.pdb #17.3 to 'AJ' 
    84409 Remapping chain ID 'K' in Shigella-Model_2025.pdb #17.3 to 'AK' 
    84410 Remapping chain ID 'L' in Shigella-Model_2025.pdb #17.3 to 'AL' 
    84411 Remapping chain ID 'M' in Shigella-Model_2025.pdb #17.3 to 'AM' 
    84412 Remapping chain ID 'N' in Shigella-Model_2025.pdb #17.3 to 'AN' 
    84413 Remapping chain ID 'O' in Shigella-Model_2025.pdb #17.3 to 'AO' 
    84414 Remapping chain ID 'P' in Shigella-Model_2025.pdb #17.3 to 'AP' 
    84415 Remapping chain ID 'Q' in Shigella-Model_2025.pdb #17.3 to 'AQ' 
    84416 Remapping chain ID 'R' in Shigella-Model_2025.pdb #17.3 to 'AR' 
    84417 Remapping chain ID 'S' in Shigella-Model_2025.pdb #17.3 to 'AS' 
    84418 Remapping chain ID 'T' in Shigella-Model_2025.pdb #17.3 to 'AT' 
    84419 Remapping chain ID 'U' in Shigella-Model_2025.pdb #17.3 to 'AU' 
    84420 Remapping chain ID 'V' in Shigella-Model_2025.pdb #17.3 to 'AV' 
    84421 Remapping chain ID 'W' in Shigella-Model_2025.pdb #17.3 to 'AW' 
    84422 Remapping chain ID 'X' in Shigella-Model_2025.pdb #17.3 to 'AX' 
    84423 Remapping chain ID 'Y' in Shigella-Model_2025.pdb #17.3 to 'AY' 
    84424 Remapping chain ID 'Z' in Shigella-Model_2025.pdb #17.3 to 'AZ' 
    84425 Remapping chain ID 'a' in Shigella-Model_2025.pdb #17.3 to 'Aa' 
    84426 Remapping chain ID 'b' in Shigella-Model_2025.pdb #17.3 to 'Ab' 
    84427 Remapping chain ID 'c' in Shigella-Model_2025.pdb #17.3 to 'Ac' 
    84428 Remapping chain ID 'd' in Shigella-Model_2025.pdb #17.3 to 'Ad' 
    84429 Remapping chain ID 'e' in Shigella-Model_2025.pdb #17.3 to 'Ae' 
    84430 Remapping chain ID 'f' in Shigella-Model_2025.pdb #17.3 to 'Af' 
    84431 Remapping chain ID 'g' in Shigella-Model_2025.pdb #17.3 to 'Ag' 
    84432 Remapping chain ID 'h' in Shigella-Model_2025.pdb #17.3 to 'Ah' 
    84433 Remapping chain ID 'i' in Shigella-Model_2025.pdb #17.3 to 'Ai' 
    84434 Remapping chain ID 'j' in Shigella-Model_2025.pdb #17.3 to 'Aj' 
    84435 Remapping chain ID 'k' in Shigella-Model_2025.pdb #17.3 to 'Ak' 
    84436 Remapping chain ID 'l' in Shigella-Model_2025.pdb #17.3 to 'Al' 
    84437 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.4 to 'Am' 
    84438 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.5 to 'An' 
    84439 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.6 to 'Ao' 
    84440 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.7 to 'Ap' 
    84441 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.8 to 'Aq' 
    84442 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.9 to 'Ar' 
    84443 Remapping chain ID 'Aa' in Shigella-Model_2025.pdb #17.10 to 'As' 
    84444 Remapping chain ID 'Ab' in Shigella-Model_2025.pdb #17.11 to 'At' 
    84445 Remapping chain ID 'Ac' in Shigella-Model_2025.pdb #17.12 to 'Au' 
    84446 Remapping chain ID 'Ad' in Shigella-Model_2025.pdb #17.13 to 'Av' 
    84447 Remapping chain ID 'Ae' in Shigella-Model_2025.pdb #17.14 to 'Aw' 
    84448 Remapping chain ID 'Af' in Shigella-Model_2025.pdb #17.15 to 'Ax' 
    84449 Remapping chain ID 'Ag' in Shigella-Model_2025.pdb #17.16 to 'Ay' 
    84450 Remapping chain ID 'Ah' in Shigella-Model_2025.pdb #17.17 to 'Az' 
    84451 Remapping chain ID 'Ai' in Shigella-Model_2025.pdb #17.18 to 'A1' 
    84452 Remapping chain ID 'Aj' in Shigella-Model_2025.pdb #17.19 to 'A2' 
    84453 Remapping chain ID 'Ak' in Shigella-Model_2025.pdb #17.20 to 'A3' 
    84454 Remapping chain ID 'Al' in Shigella-Model_2025.pdb #17.21 to 'A4' 
    84455 Remapping chain ID 'Am' in Shigella-Model_2025.pdb #17.22 to 'A5' 
    84456 Remapping chain ID 'An' in Shigella-Model_2025.pdb #17.23 to 'A6' 
    84457 Remapping chain ID 'Ao' in Shigella-Model_2025.pdb #17.24 to 'A7' 
    84458 Remapping chain ID 'Ap' in Shigella-Model_2025.pdb #17.25 to 'A8' 
    84459 Remapping chain ID 'Aq' in Shigella-Model_2025.pdb #17.26 to 'A9' 
    84460 Remapping chain ID 'Ar' in Shigella-Model_2025.pdb #17.27 to 'A0' 
    84461 Remapping chain ID 'As' in Shigella-Model_2025.pdb #17.28 to 'BA' 
    84462 Remapping chain ID 'At' in Shigella-Model_2025.pdb #17.29 to 'BB' 
    84463 Remapping chain ID 'Au' in Shigella-Model_2025.pdb #17.30 to 'BC' 
    84464 Remapping chain ID 'Av' in Shigella-Model_2025.pdb #17.31 to 'BD' 
    84465 Remapping chain ID 'Aw' in Shigella-Model_2025.pdb #17.32 to 'BE' 
    84466 Remapping chain ID 'Ax' in Shigella-Model_2025.pdb #17.33 to 'BF' 
    84467 Remapping chain ID 'Ay' in Shigella-Model_2025.pdb #17.34 to 'BG' 
    84468 Remapping chain ID 'Az' in Shigella-Model_2025.pdb #17.35 to 'BH' 
    84469 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.64 to 'B1' 
    84470 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.65 to 'B2' 
    84471 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.66 to 'B3' 
    84472 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.67 to 'B4' 
    84473 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.68 to 'B5' 
    84474 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.69 to 'B6' 
    84475 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.70 to 'B7' 
    84476 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.71 to 'B8' 
    84477 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.72 to 'B9' 
    84478 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.73 to 'B0' 
    84479 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.74 to 'CA' 
    84480 Remapping chain ID 'Bk' in Shigella-Model_2025.pdb #17.75 to 'CB' 
    84481 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.76 to 'BI' 
    84482 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.76 to 'BJ' 
    84483 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.76 to 'BK' 
    84484 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.77 to 'BL' 
    84485 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.77 to 'BM' 
    84486 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.77 to 'BN' 
    84487 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.78 to 'BO' 
    84488 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.78 to 'BP' 
    84489 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.78 to 'BQ' 
    84490 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.79 to 'BR' 
    84491 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.79 to 'BS' 
    84492 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.79 to 'BT' 
    84493 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.80 to 'BU' 
    84494 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.80 to 'BV' 
    84495 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.80 to 'BW' 
    84496 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.81 to 'BX' 
    84497 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.81 to 'BY' 
    84498 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.81 to 'BZ' 
    84499 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.82 to 'CC' 
    84500 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.83 to 'CD' 
    84501 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.84 to 'CE' 
    84502 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.85 to 'CF' 
    84503 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.86 to 'CG' 
    84504 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.87 to 'CH' 
    84505 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.88 to 'CI' 
    84506 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.89 to 'CJ' 
    84507 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.90 to 'CK' 
    84508 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.91 to 'CL' 
    84509 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.92 to 'CM' 
    84510 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.93 to 'CN' 
    84511 Remapping chain ID 'A' in Shigella-Model_2025.pdb #17.94 to 'CO' 
    84512 Remapping chain ID 'B' in Shigella-Model_2025.pdb #17.94 to 'CP' 
    84513 Remapping chain ID 'C' in Shigella-Model_2025.pdb #17.94 to 'CQ' 
    84514 Remapping chain ID 'D' in Shigella-Model_2025.pdb #17.94 to 'CR' 
    84515 Remapping chain ID 'E' in Shigella-Model_2025.pdb #17.94 to 'CS' 
    84516 Remapping chain ID 'F' in Shigella-Model_2025.pdb #17.94 to 'CT' 
    84517 Remapping chain ID 'G' in Shigella-Model_2025.pdb #17.94 to 'CU' 
    84518 Remapping chain ID 'H' in Shigella-Model_2025.pdb #17.94 to 'CV' 
    84519 Remapping chain ID 'I' in Shigella-Model_2025.pdb #17.94 to 'CW' 
    84520 Remapping chain ID 'Az' in Shigella-Model_2025.pdb #17.95 to 'CX' 
    84521 Remapping chain ID 'Be' in Shigella-Model_2025.pdb #17.96 to 'CY' 
    84522 Remapping chain ID 'Bj' in Shigella-Model_2025.pdb #17.97 to 'CZ' 
    84523 Remapping chain ID 'Bo' in Shigella-Model_2025.pdb #17.98 to 'Cc' 
    84524 Remapping chain ID 'Bt' in Shigella-Model_2025.pdb #17.99 to 'Cd' 
    84525 Remapping chain ID 'By' in Shigella-Model_2025.pdb #17.100 to 'Ce' 
    84526 
    84527 > hide #!9 models
    84528 
    84529 > hide #!10 models
    84530 
    84531 > hide #!11 models
    84532 
    84533 > hide #!12 models
    84534 
    84535 > hide #!14 models
    84536 
    84537 > hide #!13 models
    84538 
    84539 > hide #!15 models
    84540 
    84541 > hide #!16 models
    84542 
    84543 > hide #!17 models
    84544 
    84545 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    84546 > YaleUniversity/Jun_Lab_documents/Websites/Segmentation-06132025/IpaD.mrc
    84547 
    84548 Opened IpaD.mrc as #19, grid size 120,120,200, pixel 4.3,4.3,4.3, shown at
    84549 level 0.149, step 1, values float32 
    84550 
    84551 > volume #19 level 0.1278
    84552 
    84553 > volume #19 level 0.07007
    84554 
    84555 > view orient
    84556 
    84557 [Repeated 1 time(s)]
    84558 
    84559 > turn x 90
    84560 
    84561 [Repeated 2 time(s)]
    84562 
    84563 > color #19 #ffffb287 models
    84564 
    84565 > ui tool show "Fit in Map"
    84566 
    84567 The cached device pixel ratio value was stale on window expose. Please file a
    84568 QTBUG which explains how to reproduce. 
    84569 
    84570 [Repeated 1 time(s)]
    84571 
    84572 > fitmap #18 inMap #19
    84573 
    84574 Fit molecule combination (#18) to map IpaD.mrc (#19) using 363622 atoms 
    84575 average map value = 0.09591, steps = 84 
    84576 shifted from previous position = 30.8 
    84577 rotated from previous position = 6.12 degrees 
    84578 atoms outside contour = 135688, contour level = 0.070071 
    84579  
    84580 Position of combination (#18) relative to IpaD.mrc (#19) coordinates: 
    84581 Matrix rotation and translation 
    84582 0.99429345 0.10667947 0.00013920 -27.11517103 
    84583 -0.10667941 0.99429339 -0.00038562 28.02764504 
    84584 -0.00017954 0.00036857 0.99999992 30.71854997 
    84585 Axis 0.00353480 0.00149387 -0.99999264 
    84586 Axis point 248.90446458 266.46909967 0.00000000 
    84587 Rotation angle (degrees) 6.12398011 
    84588 Shift along axis -30.77230074 
    84589  
    84590 
    84591 > fitmap #18 inMap #19
    84592 
    84593 Fit molecule combination (#18) to map IpaD.mrc (#19) using 363622 atoms 
    84594 average map value = 0.09591, steps = 40 
    84595 shifted from previous position = 0.0695 
    84596 rotated from previous position = 0.00781 degrees 
    84597 atoms outside contour = 135720, contour level = 0.070071 
    84598  
    84599 Position of combination (#18) relative to IpaD.mrc (#19) coordinates: 
    84600 Matrix rotation and translation 
    84601 0.99427927 0.10681157 0.00016802 -27.15550370 
    84602 -0.10681150 0.99427921 -0.00039638 28.06244942 
    84603 -0.00020940 0.00037616 0.99999991 30.65515722 
    84604 Axis 0.00361633 0.00176676 -0.99999190 
    84605 Axis point 248.96121509 266.53207465 0.00000000 
    84606 Rotation angle (degrees) 6.13159687 
    84607 Shift along axis -30.70353274 
    84608  
    84609 
    84610 > fitmap #18 inMap #19
    84611 
    84612 Fit molecule combination (#18) to map IpaD.mrc (#19) using 363622 atoms 
    84613 average map value = 0.09591, steps = 40 
    84614 shifted from previous position = 0.0695 
    84615 rotated from previous position = 0.00308 degrees 
    84616 atoms outside contour = 135689, contour level = 0.070071 
    84617  
    84618 Position of combination (#18) relative to IpaD.mrc (#19) coordinates: 
    84619 Matrix rotation and translation 
    84620 0.99428218 0.10678451 0.00012182 -27.13217386 
    84621 -0.10678446 0.99428211 -0.00040053 28.06581289 
    84622 -0.00016389 0.00038523 0.99999991 30.70995083 
    84623 Axis 0.00367918 0.00133778 -0.99999234 
    84624 Axis point 248.95009227 266.35332200 0.00000000 
    84625 Rotation angle (degrees) 6.13003534 
    84626 Shift along axis -30.77199392 
    84627  
    84628 
    84629 > hide #!19 models
    84630 
    84631 > select add #18
    84632 
    84633 363622 atoms, 369397 bonds, 93 pseudobonds, 45309 residues, 2 models selected 
    84634 
    84635 > hide sel cartoons
    84636 
    84637 > hide sel surfaces
    84638 
    84639 > hide sel atoms
    84640 
    84641 > show sel surfaces
    84642 
    84643 > hide sel surfaces
    84644 
    84645 > show sel cartoons
    84646 
    84647 > select subtract #18
    84648 
    84649 219 models selected 
    84650 
    84651 > select add #18.1
    84652 
    84653 93 pseudobonds, 1 model selected 
    84654 
    84655 > select subtract #18.1
    84656 
    84657 Nothing selected 
    84658 
    84659 > select add #18.1
    84660 
    84661 93 pseudobonds, 1 model selected 
    84662 
    84663 > select subtract #18.1
    84664 
    84665 Nothing selected 
    84666 
    84667 > hide #18.1 models
    84668 
    84669 > show #18.1 models
    84670 
    84671 > hide #18.1 models
    84672 
    84673 > show #18.1 models
    84674 
    84675 > hide #18.1 models
    84676 
    84677 > show #18.1 models
    84678 
    84679 > hide #18.1 models
    84680 
    84681 > hide #18.2 models
    84682 
    84683 > show #18.2 models
    84684 
    84685 > select add #18.2
    84686 
    84687 1102 atoms, 138 residues, 1 model selected 
    84688 
    84689 > select subtract #18.2
    84690 
    84691 1 model selected 
    84692 
    84693 > select add #18.2
    84694 
    84695 1102 atoms, 138 residues, 1 model selected 
    84696 
    84697 > select add #18.3
    84698 
    84699 2204 atoms, 276 residues, 2 models selected 
    84700 
    84701 > select add #18.4
    84702 
    84703 3306 atoms, 414 residues, 3 models selected 
    84704 
    84705 > select add #18.5
    84706 
    84707 4408 atoms, 552 residues, 4 models selected 
    84708 
    84709 > select add #18.6
    84710 
    84711 5510 atoms, 690 residues, 5 models selected 
    84712 
    84713 > select add #18.7
    84714 
    84715 6612 atoms, 828 residues, 6 models selected 
    84716 
    84717 > select add #18.8
    84718 
    84719 7714 atoms, 966 residues, 7 models selected 
    84720 
    84721 > select add #18.9
    84722 
    84723 8816 atoms, 1104 residues, 8 models selected 
    84724 
    84725 > select add #18.10
    84726 
    84727 9918 atoms, 1242 residues, 9 models selected 
    84728 
    84729 > select add #18.11
    84730 
    84731 11020 atoms, 1380 residues, 10 models selected 
    84732 
    84733 > select add #18.48
    84734 
    84735 12122 atoms, 1518 residues, 11 models selected 
    84736 
    84737 > select add #18.47
    84738 
    84739 13224 atoms, 1656 residues, 12 models selected 
    84740 
    84741 > select add #18.46
    84742 
    84743 14958 atoms, 1867 residues, 13 models selected 
    84744 
    84745 > select subtract #18.46
    84746 
    84747 13224 atoms, 1656 residues, 14 models selected 
    84748 
    84749 > select add #18.46
    84750 
    84751 14958 atoms, 1867 residues, 13 models selected 
    84752 
    84753 > select add #18.45
    84754 
    84755 16692 atoms, 2078 residues, 14 models selected 
    84756 
    84757 > select add #18.220
    84758 
    84759 17794 atoms, 2216 residues, 15 models selected 
    84760 
    84761 > select add #18.219
    84762 
    84763 18896 atoms, 2354 residues, 16 models selected 
    84764 
    84765 > hide sel cartoons
    84766 
    84767 > select add #18.131
    84768 
    84769 20309 atoms, 2529 residues, 17 models selected 
    84770 
    84771 > select subtract #18.131
    84772 
    84773 18896 atoms, 2354 residues, 18 models selected 
    84774 
    84775 > select add #18.25
    84776 
    84777 20630 atoms, 2565 residues, 17 models selected 
    84778 
    84779 > select subtract #18.25
    84780 
    84781 18896 atoms, 2354 residues, 18 models selected 
    84782 
    84783 > show sel cartoons
    84784 
    84785 > select clear
    84786 
    84787 Drag select of 345 residues 
    84788 
    84789 > select subtract #18.2
    84790 
    84791 2575 atoms, 323 residues, 17 models selected 
    84792 
    84793 > select add #18.2
    84794 
    84795 3677 atoms, 461 residues, 16 models selected 
    84796 
    84797 > select subtract #18.3
    84798 
    84799 3500 atoms, 439 residues, 17 models selected 
    84800 
    84801 > select add #18.3
    84802 
    84803 4602 atoms, 577 residues, 16 models selected 
    84804 
    84805 > select subtract #18.4
    84806 
    84807 4441 atoms, 557 residues, 17 models selected 
    84808 
    84809 > select add #18.4
    84810 
    84811 5543 atoms, 695 residues, 16 models selected 
    84812 
    84813 > select subtract #18.5
    84814 
    84815 5360 atoms, 672 residues, 17 models selected 
    84816 
    84817 > select add #18.5
    84818 
    84819 6462 atoms, 810 residues, 16 models selected 
    84820 
    84821 > select subtract #18.6
    84822 
    84823 6287 atoms, 788 residues, 17 models selected 
    84824 
    84825 > select add #18.6
    84826 
    84827 7389 atoms, 926 residues, 16 models selected 
    84828 
    84829 > select subtract #18.7
    84830 
    84831 7211 atoms, 904 residues, 17 models selected 
    84832 
    84833 > select add #18.7
    84834 
    84835 8313 atoms, 1042 residues, 16 models selected 
    84836 
    84837 > select subtract #18.8
    84838 
    84839 8153 atoms, 1022 residues, 17 models selected 
    84840 
    84841 > select add #18.8
    84842 
    84843 9255 atoms, 1160 residues, 16 models selected 
    84844 
    84845 > select subtract #18.9
    84846 
    84847 9100 atoms, 1140 residues, 17 models selected 
    84848 
    84849 > select add #18.9
    84850 
    84851 10202 atoms, 1278 residues, 16 models selected 
    84852 
    84853 > select subtract #18.10
    84854 
    84855 10063 atoms, 1260 residues, 17 models selected 
    84856 
    84857 > select add #18.10
    84858 
    84859 11165 atoms, 1398 residues, 16 models selected 
    84860 
    84861 > select subtract #18.11
    84862 
    84863 11003 atoms, 1377 residues, 17 models selected 
    84864 
    84865 > select add #18.11
    84866 
    84867 12105 atoms, 1515 residues, 16 models selected 
    84868 
    84869 > select subtract #18.47
    84870 
    84871 11942 atoms, 1495 residues, 17 models selected 
    84872 
    84873 > select add #18.47
    84874 
    84875 13044 atoms, 1633 residues, 16 models selected 
    84876 
    84877 > select subtract #18.48
    84878 
    84879 12843 atoms, 1608 residues, 17 models selected 
    84880 
    84881 > select add #18.48
    84882 
    84883 13945 atoms, 1746 residues, 16 models selected 
    84884 
    84885 > select subtract #18.194
    84886 
    84887 13779 atoms, 1725 residues, 17 models selected 
    84888 
    84889 > select add #18.194
    84890 
    84891 14881 atoms, 1863 residues, 16 models selected 
    84892 
    84893 > select subtract #18.196
    84894 
    84895 14703 atoms, 1841 residues, 17 models selected 
    84896 
    84897 > select add #18.196
    84898 
    84899 15805 atoms, 1979 residues, 16 models selected 
    84900 
    84901 > select subtract #18.219
    84902 
    84903 15615 atoms, 1955 residues, 17 models selected 
    84904 
    84905 > select add #18.219
    84906 
    84907 16717 atoms, 2093 residues, 16 models selected 
    84908 
    84909 > select subtract #18.220
    84910 
    84911 16530 atoms, 2070 residues, 17 models selected 
    84912 
    84913 > select add #18.220
    84914 
    84915 17632 atoms, 2208 residues, 16 models selected 
    84916 
    84917 > hide sel cartoons
    84918 
    84919 > show sel cartoons
    84920 
    84921 > color (#!18 & sel) #acffddff
    84922 
    84923 > color (#!18 & sel) #afffdbff
    84924 
    84925 > color (#!18 & sel) #b0ffc9ff
    84926 
    84927 > color (#!18 & sel) #a8ffbeff
    84928 
    84929 > color (#!18 & sel) #a8ffbfff
    84930 
    84931 > color (#!18 & sel) #a9ffc4ff
    84932 
    84933 > color (#!18 & sel) #abffc7ff
    84934 
    84935 > color (#!18 & sel) #b0ffcbff
    84936 
    84937 > color (#!18 & sel) #b9ffcfff
    84938 
    84939 > color (#!18 & sel) #bbffd0ff
    84940 
    84941 > color (#!18 & sel) #bcffcfff
    84942 
    84943 > color (#!18 & sel) #bdffcfff
    84944 
    84945 > color (#!18 & sel) #c1ffcfff
    84946 
    84947 > color (#!18 & sel) #c2ffcfff
    84948 
    84949 > color (#!18 & sel) #c3ffcfff
    84950 
    84951 > color (#!18 & sel) #c3ffceff
    84952 
    84953 > color (#!18 & sel) #c4ffccff
    84954 
    84955 [Repeated 1 time(s)]
    84956 
    84957 > color (#!18 & sel) #c8ffcdff
    84958 
    84959 > save /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06142025.cxs includeMaps
    84960 > true
    84961 
    84962 ——— End of log from Mon Jun 16 11:13:56 2025 ———
    84963 
    84964 opened ChimeraX session 
    84965 
    84966 > show #!19 models
    84967 
    84968 > hide #!19 models
    84969 
    84970 > show #!19 models
    84971 
    84972 > color #19 #919191ff models
    84973 
    84974 > color #19 #929292ff models
    84975 
    84976 > color #19 #9292926f models
    84977 
    84978 > color #19 #92929249 models
    84979 
    84980 > select clear
    84981 
    84982 [Repeated 1 time(s)]
    84983 
    84984 > color #19 #212121ff models
    84985 
    84986 > color #19 #21212106 models
    84987 
    84988 > color #19 #2121211a models
    84989 
    84990 > select add #18
    84991 
    84992 363622 atoms, 369397 bonds, 93 pseudobonds, 45309 residues, 2 models selected 
    84993 
    84994 > show sel surfaces
    84995 
    84996 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    84997 > YaleUniversity/Jun_Lab_documents/Websites/Models/MxiGModel_Jian.pdb
    84998 
    84999 Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
    85000 YaleUniversity/Jun_Lab_documents/Websites/Models/MxiGModel_Jian.pdb 
    85001 --- 
    85002 warnings | Start residue of secondary structure not found: HELIX 1 1 THR A 11 THR A 23 1 13 
    85003 Start residue of secondary structure not found: HELIX 2 2 GLN A 24 ASN A 40 1
    85004 17 
    85005 Start residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1
    85006 39 
    85007 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    85008 13 
    85009 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    85010 17 
    85011 4549 messages similar to the above omitted 
    85012  
    85013 Chain information for MxiGModel_Jian.pdb 
    85014 --- 
    85015 Chain | Description 
    85016 20.1/Aa 20.2/Ab 20.3/Ac 20.4/Ad 20.5/Ae 20.6/Af 20.7/Ag 20.8/Ah 20.9/Ai 20.10/Aj 20.11/Ak 20.12/Al 20.13/Am 20.14/An 20.15/Ao 20.16/Ap 20.17/Aq 20.18/Ar 20.19/As 20.20/At 20.21/Au 20.22/Av 20.23/Aw 20.24/Ax | No description available 
    85017 20.25/Ay 20.27/Ba 20.28/Bb 20.29/Bc 20.30/Bd 20.32/Bf 20.33/Bg 20.34/Bh 20.35/Bi 20.37/Bk 20.38/Bl 20.39/Bm 20.40/Bn 20.42/Bp 20.43/Bq 20.44/Br 20.45/Bs 20.47/Bu 20.48/Bv 20.49/Bw 20.50/Bx 20.52/Bz 20.53/Ca 20.54/Cb | No description available 
    85018 20.26/Az 20.31/Be 20.36/Bj 20.41/Bo 20.46/Bt 20.51/By | No description available 
    85019 20.55/Bk 20.56/Bk 20.57/Bk 20.58/Bk 20.59/Bk 20.60/Bk 20.61/Bk 20.62/Bk 20.63/Bk 20.64/Bk 20.65/Bk 20.66/Bk | No description available 
    85020  
    85021 
    85022 > select subtract #18
    85023 
    85024 219 models selected 
    85025 
    85026 > select add #18
    85027 
    85028 363622 atoms, 369397 bonds, 93 pseudobonds, 45309 residues, 2 models selected 
    85029 
    85030 > hide sel surfaces
    85031 
    85032 [Repeated 1 time(s)]
    85033 
    85034 > select subtract #18
    85035 
    85036 219 models selected 
    85037 
    85038 > hide #!18 models
    85039 
    85040 > select add #20
    85041 
    85042 119262 atoms, 121296 bonds, 14790 residues, 67 models selected 
    85043 
    85044 > comvine #20
    85045 
    85046 Unknown command: comvine #20 
    85047 
    85048 > combine #20
    85049 
    85050 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.55 to 'B1' 
    85051 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.56 to 'B2' 
    85052 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.57 to 'B3' 
    85053 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.58 to 'B4' 
    85054 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.59 to 'B5' 
    85055 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.60 to 'B6' 
    85056 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.61 to 'B7' 
    85057 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.62 to 'B8' 
    85058 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.63 to 'B9' 
    85059 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.64 to 'B0' 
    85060 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.65 to 'CA' 
    85061 Remapping chain ID 'Bk' in MxiGModel_Jian.pdb #20.66 to 'CB' 
    85062 
    85063 > ui tool show "Fit in Map"
    85064 
    85065 > hide #!20 models
    85066 
    85067 > hide #!19 models
    85068 
    85069 > show #!20 models
    85070 
    85071 > select subtract #20
    85072 
    85073 Nothing selected 
    85074 
    85075 > hide #!20 models
    85076 
    85077 > show #!3 models
    85078 
    85079 > hide #!3 models
    85080 
    85081 > show #!11 models
    85082 
    85083 The cached device pixel ratio value was stale on window expose. Please file a
    85084 QTBUG which explains how to reproduce. 
    85085 
    85086 [Repeated 1 time(s)]
    85087 
    85088 > fitmap #21 inMap #11
    85089 
    85090 Fit molecule combination (#21) to map MxiGp.mrc gaussian (#11) using 119262
    85091 atoms 
    85092 average map value = 0.05915, steps = 96 
    85093 shifted from previous position = 30.2 
    85094 rotated from previous position = 2.02 degrees 
    85095 atoms outside contour = 56989, contour level = 0.01197 
    85096  
    85097 Position of combination (#21) relative to MxiGp.mrc gaussian (#11)
    85098 coordinates: 
    85099 Matrix rotation and translation 
    85100 0.99938175 0.03472784 0.00548504 -11.91171122 
    85101 -0.03472387 0.99939661 -0.00081815 8.31950899 
    85102 -0.00551015 0.00062718 0.99998462 31.40504216 
    85103 Axis 0.02055027 0.15633375 -0.98749048 
    85104 Axis point 368.69366412 331.83876355 0.00000000 
    85105 Rotation angle (degrees) 2.01526509 
    85106 Shift along axis -29.95634895 
    85107  
    85108 
    85109 > fitmap #21 inMap #11
    85110 
    85111 Fit molecule combination (#21) to map MxiGp.mrc gaussian (#11) using 119262
    85112 atoms 
    85113 average map value = 0.05915, steps = 48 
    85114 shifted from previous position = 0.0285 
    85115 rotated from previous position = 0.00735 degrees 
    85116 atoms outside contour = 56986, contour level = 0.01197 
    85117  
    85118 Position of combination (#21) relative to MxiGp.mrc gaussian (#11)
    85119 coordinates: 
    85120 Matrix rotation and translation 
    85121 0.99937794 0.03482402 0.00556970 -11.95976855 
    85122 -0.03482000 0.99939327 -0.00081565 8.34371750 
    85123 -0.00559473 0.00062120 0.99998416 31.40152622 
    85124 Axis 0.02036700 0.15825326 -0.98718848 
    85125 Axis point 369.82390082 332.54039666 0.00000000 
    85126 Rotation angle (degrees) 2.02146626 
    85127 Shift along axis -29.92238891 
    85128  
    85129 
    85130 > show #!16 models
    85131 
    85132 > color #11 #86d8ffa7 models
    85133 
    85134 > color #11 #86d8ff8b models
    85135 
    85136 > hide #!16 models
    85137 
    85138 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    85139 > YaleUniversity/Jun_Lab_documents/Websites/Models/8axn.cif
    85140 
    85141 8axn.cif title: 
    85142 Inner membrane ring and secretin N0 N1 domains of the type 3 secretion system
    85143 of Shigella flexneri [more info...] 
    85144  
    85145 Chain information for 8axn.cif #22 
    85146 --- 
    85147 Chain | Description | UniProt 
    85148 0 1 2 3 4 5 6 7 8 9 Y Z a0 b0 y z | Outer membrane protein MxiD | MXID_SHIFL 1-566 
    85149 A B C D E F G H I J K L M N O P Q R S T U V W X | Protein MxiG | MXIG_SHIFL 1-371 
    85150 a b c d e f g h i j k l m n o p q r s t u v w x | Lipoprotein MxiJ | MXIJ_SHIFL 1-241 
    85151  
    85152 
    85153 > hide #21 models
    85154 
    85155 > hide #!11 models
    85156 
    85157 > show #!5 models
    85158 
    85159 > show #!11 models
    85160 
    85161 > select add #22
    85162 
    85163 94656 atoms, 96264 bonds, 11704 residues, 1 model selected 
    85164 
    85165 > view matrix models #22,1,0,0,-28.809,0,1,0,-50.357,0,0,1,233.87
    85166 
    85167 > view matrix models #22,1,0,0,-77.277,0,1,0,-74.727,0,0,1,227.69
    85168 
    85169 > fitmap #22 inMap #11
    85170 
    85171 Fit molecule 8axn.cif (#22) to map MxiGp.mrc gaussian (#11) using 94656 atoms 
    85172 average map value = 0.07461, steps = 68 
    85173 shifted from previous position = 7.73 
    85174 rotated from previous position = 5.13 degrees 
    85175 atoms outside contour = 31505, contour level = 0.01197 
    85176  
    85177 Position of 8axn.cif (#22) relative to MxiGp.mrc gaussian (#11) coordinates: 
    85178 Matrix rotation and translation 
    85179 0.99600057 0.08934650 0.00026261 -103.84271910 
    85180 -0.08934643 0.99600058 -0.00026076 -44.30658929 
    85181 -0.00028486 0.00023626 0.99999993 220.22555197 
    85182 Axis 0.00278139 0.00306372 -0.99999144 
    85183 Axis point -538.96887063 1131.25244200 0.00000000 
    85184 Rotation angle (degrees) 5.12605469 
    85185 Shift along axis -220.64823617 
    85186  
    85187 
    85188 > fitmap #22 inMap #11
    85189 
    85190 Fit molecule 8axn.cif (#22) to map MxiGp.mrc gaussian (#11) using 94656 atoms 
    85191 average map value = 0.07461, steps = 48 
    85192 shifted from previous position = 0.0672 
    85193 rotated from previous position = 0.0185 degrees 
    85194 atoms outside contour = 31526, contour level = 0.01197 
    85195  
    85196 Position of 8axn.cif (#22) relative to MxiGp.mrc gaussian (#11) coordinates: 
    85197 Matrix rotation and translation 
    85198 0.99597967 0.08957852 0.00042034 -103.95311438 
    85199 -0.08957849 0.99597976 -0.00010411 -44.25815981 
    85200 -0.00042797 0.00006604 0.99999991 220.26264183 
    85201 Axis 0.00094970 0.00473494 -0.99998834 
    85202 Axis point -533.31462059 1134.19530041 0.00000000 
    85203 Rotation angle (degrees) 5.13941943 
    85204 Shift along axis -220.56835786 
    85205  
    85206 
    85207 > fitmap #22 inMap #11
    85208 
    85209 Fit molecule 8axn.cif (#22) to map MxiGp.mrc gaussian (#11) using 94656 atoms 
    85210 average map value = 0.07461, steps = 48 
    85211 shifted from previous position = 0.0247 
    85212 rotated from previous position = 0.042 degrees 
    85213 atoms outside contour = 31516, contour level = 0.01197 
    85214  
    85215 Position of 8axn.cif (#22) relative to MxiGp.mrc gaussian (#11) coordinates: 
    85216 Matrix rotation and translation 
    85217 0.99597464 0.08963540 0.00011929 -103.89411205 
    85218 -0.08963528 0.99597436 -0.00077024 -44.07256008 
    85219 -0.00018785 0.00075645 0.99999970 219.97557348 
    85220 Axis 0.00851578 0.00171317 -0.99996227 
    85221 Axis point -537.49400828 1113.94753412 0.00000000 
    85222 Rotation angle (degrees) 5.14282355 
    85223 Shift along axis -220.92751708 
    85224  
    85225 
    85226 > hide #!5 models
    85227 
    85228 > show #21 models
    85229 
    85230 > hide #22 models
    85231 
    85232 > show #22 models
    85233 
    85234 > matchmaker #22 to #21
    85235 
    85236 Parameters 
    85237 --- 
    85238 Chain pairing | bb 
    85239 Alignment algorithm | Needleman-Wunsch 
    85240 Similarity matrix | BLOSUM-62 
    85241 SS fraction | 0.3 
    85242 Gap open (HH/SS/other) | 18/18/6 
    85243 Gap extend | 1 
    85244 SS matrix |  |  | H | S | O 
    85245 ---|---|---|--- 
    85246 H | 6 | -9 | -6 
    85247 S |  | 6 | -6 
    85248 O |  |  | 4 
    85249 Iteration cutoff | 2 
    85250  
    85251 Matchmaker combination, chain Ay (#21) with 8axn.cif, chain B (#22), sequence
    85252 alignment score = 1474.8 
    85253 RMSD between 185 pruned atom pairs is 0.185 angstroms; (across all 190 pairs:
    85254 0.819) 
    85255  
    85256 
    85257 > hide sel atoms
    85258 
    85259 > show sel cartoons
    85260 
    85261 > show #!5 models
    85262 
    85263 > hide #!5 models
    85264 
    85265 > show #!13 models
    85266 
    85267 > color #13 #5fabeb71 models
    85268 
    85269 > show #!16 models
    85270 
    85271 > view orient
    85272 
    85273 > turn x 90
    85274 
    85275 [Repeated 2 time(s)]
    85276 
    85277 > select add #21
    85278 
    85279 213918 atoms, 217560 bonds, 26494 residues, 2 models selected 
    85280 
    85281 > view matrix models
    85282 > #21,0.99938,0.034824,0.0055697,-12.453,-0.03482,0.99939,-0.00081565,8.3437,-0.0055947,0.0006212,0.99998,38.219,#22,0.81523,0.57913,0.00099389,-207.19,-0.57913,0.81523,0.00088373,178.46,-0.00029846,-0.001296,1,227.05
    85283 
    85284 > fitmap #21 inMap #11
    85285 
    85286 Fit molecule combination (#21) to map MxiGp.mrc gaussian (#11) using 119262
    85287 atoms 
    85288 average map value = 0.05915, steps = 52 
    85289 shifted from previous position = 6.74 
    85290 rotated from previous position = 0.0214 degrees 
    85291 atoms outside contour = 56992, contour level = 0.01197 
    85292  
    85293 Position of combination (#21) relative to MxiGp.mrc gaussian (#11)
    85294 coordinates: 
    85295 Matrix rotation and translation 
    85296 0.99936622 0.03517741 0.00545039 -12.05592678 
    85297 -0.03517349 0.99938089 -0.00081378 8.46311441 
    85298 -0.00547564 0.00062156 0.99998482 31.46624660 
    85299 Axis 0.02015680 0.15343668 -0.98795288 
    85300 Axis point 365.77153476 332.09958673 0.00000000 
    85301 Rotation angle (degrees) 2.04041197 
    85302 Shift along axis -30.03162571 
    85303  
    85304 
    85305 > matchmaker #21 to #22
    85306 
    85307 Parameters 
    85308 --- 
    85309 Chain pairing | bb 
    85310 Alignment algorithm | Needleman-Wunsch 
    85311 Similarity matrix | BLOSUM-62 
    85312 SS fraction | 0.3 
    85313 Gap open (HH/SS/other) | 18/18/6 
    85314 Gap extend | 1 
    85315 SS matrix |  |  | H | S | O 
    85316 ---|---|---|--- 
    85317 H | 6 | -9 | -6 
    85318 S |  | 6 | -6 
    85319 O |  |  | 4 
    85320 Iteration cutoff | 2 
    85321  
    85322 Matchmaker 8axn.cif, chain B (#22) with combination, chain Ay (#21), sequence
    85323 alignment score = 1474.8 
    85324 RMSD between 185 pruned atom pairs is 0.185 angstroms; (across all 190 pairs:
    85325 0.819) 
    85326  
    85327 
    85328 > hide #21 models
    85329 
    85330 > select subtract #21
    85331 
    85332 94656 atoms, 96264 bonds, 11704 residues, 1 model selected 
    85333 
    85334 > hide #!11 models
    85335 
    85336 > select clear
    85337 
    85338 Drag select of 13 OM_complex.mrc gaussian , 8986 residues 
    85339 
    85340 > hide sel cartoons
    85341 
    85342 Alignment identifier is 1 
    85343 Alignment identifier is 2 
    85344 
    85345 > select subtract #13
    85346 
    85347 72635 atoms, 8986 residues, 1 model selected 
    85348 
    85349 > hide #!13 models
    85350 
    85351 > select add #22
    85352 
    85353 94656 atoms, 96264 bonds, 11704 residues, 1 model selected 
    85354 Alignment identifier is 1 
    85355 Alignment identifier is 2 
    85356 Alignment identifier is 3 
    85357 
    85358 > show sel cartoons
    85359 
    85360 > select clear
    85361 
    85362 [Repeated 1 time(s)]
    85363 
    85364 > select #22/a,d,c,b,e,h,k,n,q,t,x,g,j,m,p,s,w,v,u,f,i,l,o,r
    85365 
    85366 34272 atoms, 34776 bonds, 4320 residues, 1 model selected 
    85367 
    85368 > select clear
    85369 
    85370 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X
    85371 
    85372 42752 atoms, 43504 bonds, 5176 residues, 1 model selected 
    85373 
    85374 > select clear
    85375 
    85376 > select #22/B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V:276-368/C,R,O,L,I,F,W-X:276-361
    85377 
    85378 18080 atoms, 18376 bonds, 2176 residues, 1 model selected 
    85379 
    85380 > select clear
    85381 
    85382 > select #22/B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V:349-368/C,R,O,L,I,F,W-X:349-361
    85383 
    85384 3728 atoms, 3832 bonds, 424 residues, 1 model selected 
    85385 
    85386 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X:347
    85387 
    85388 216 atoms, 192 bonds, 24 residues, 1 model selected 
    85389 
    85390 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X:151-347
    85391 
    85392 38880 atoms, 39504 bonds, 4728 residues, 1 model selected 
    85393 
    85394 > hide sel surfaces
    85395 
    85396 > hide sel cartoons
    85397 
    85398 > show sel surfaces
    85399 
    85400 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X:347
    85401 
    85402 216 atoms, 192 bonds, 24 residues, 1 model selected 
    85403 
    85404 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X:151-347
    85405 
    85406 38880 atoms, 39504 bonds, 4728 residues, 1 model selected 
    85407 
    85408 > hide sel cartoons
    85409 
    85410 > hide sel surfaces
    85411 
    85412 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X:349
    85413 
    85414 288 atoms, 288 bonds, 24 residues, 1 model selected 
    85415 
    85416 > select #22/B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V:349-368/C,R,O,L,I,F,W-X:349-361
    85417 
    85418 3728 atoms, 3832 bonds, 424 residues, 1 model selected 
    85419 
    85420 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X:356-357
    85421 
    85422 456 atoms, 456 bonds, 48 residues, 1 model selected 
    85423 
    85424 > select #22/B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V:356-368/C,R,O,L,I,F,W-X:356-361
    85425 
    85426 2360 atoms, 2440 bonds, 256 residues, 1 model selected 
    85427 
    85428 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X:347-348
    85429 
    85430 360 atoms, 336 bonds, 48 residues, 1 model selected 
    85431 
    85432 > select #22/B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V:347-368/C,R,O,L,I,F,W-X:347-361
    85433 
    85434 4088 atoms, 4192 bonds, 472 residues, 1 model selected 
    85435 
    85436 > show sel cartoons
    85437 
    85438 > select add #21
    85439 
    85440 123350 atoms, 125488 bonds, 15262 residues, 26 models selected 
    85441 Alignment identifier is 4 
    85442 Alignment identifier is 5 
    85443 Alignment identifier is 6 
    85444 Alignment identifier is 7 
    85445 Alignment identifier is 8 
    85446 
    85447 > select clear
    85448 
    85449 > select #22/C,B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V,R,O,L,I,F,W-X
    85450 
    85451 42752 atoms, 43504 bonds, 5176 residues, 1 model selected 
    85452 
    85453 > hide sel cartoons
    85454 
    85455 > show #21 models
    85456 
    85457 > select clear
    85458 
    85459 > select #22/B,A,S,P,M,J,G,D,U,T,Q,N,K,H,E,V:333-368/C,R,O,L,I,F,W-X:333-361
    85460 
    85461 6800 atoms, 6952 bonds, 808 residues, 1 model selected 
    85462 
    85463 > show sel cartoons
    85464 
    85465 > color (#!22 & sel) #89eae671
    85466 
    85467 [Repeated 1 time(s)]
    85468 
    85469 > color (#!22 & sel) #8aeae971
    85470 
    85471 > color (#!22 & sel) #8ae9ea71
    85472 
    85473 > color (#!22 & sel) #8ae3ea71
    85474 
    85475 > color (#!22 & sel) #88daea71
    85476 
    85477 > color (#!22 & sel) #84d0ea71
    85478 
    85479 > color (#!22 & sel) #85dbea71
    85480 
    85481 > color (#!22 & sel) #8ceadd71
    85482 
    85483 > color (#!22 & sel) #93eace71
    85484 
    85485 > color (#!22 & sel) #94eac171
    85486 
    85487 > color (#!22 & sel) #95eac071
    85488 
    85489 > color (#!22 & sel) #96eab571
    85490 
    85491 > color (#!22 & sel) #90eaad71
    85492 
    85493 > color (#!22 & sel) #8feaad71
    85494 
    85495 > color (#!22 & sel) #83eaac71
    85496 
    85497 > color (#!22 & sel) #7feaaa71
    85498 
    85499 > color (#!22 & sel) #76eaa571
    85500 
    85501 > color (#!22 & sel) #6dea9e71
    85502 
    85503 > color (#!22 & sel) #67ea9971
    85504 
    85505 > color (#!22 & sel) #65ea9771
    85506 
    85507 [Repeated 1 time(s)]
    85508 
    85509 > color (#!22 & sel) #71ea9471
    85510 
    85511 > color (#!22 & sel) #7aea9471
    85512 
    85513 > color (#!22 & sel) #7dea9471
    85514 
    85515 > color (#!22 & sel) #7fea9571
    85516 
    85517 > color (#!22 & sel) #80ea9671
    85518 
    85519 > color (#!22 & sel) #84ea9d71
    85520 
    85521 > color (#!22 & sel) #85ea9d71
    85522 
    85523 > select clear
    85524 
    85525 > select #22/a,d,c,b,e,h,k,n,q,t,x,g,j,m,p,s,w,v,u,f,i,l,o,r
    85526 
    85527 34272 atoms, 34776 bonds, 4320 residues, 1 model selected 
    85528 
    85529 > color (#!22 & sel) #85ea9d71
    85530 
    85531 > select clear
    85532 
    85533 > select #22/0-1,a0,Y-Z,2,4,6,8,b0,y-z,3,5,7,9
    85534 
    85535 17632 atoms, 17984 bonds, 2208 residues, 1 model selected 
    85536 
    85537 > select add #21
    85538 
    85539 136894 atoms, 139280 bonds, 16998 residues, 2 models selected 
    85540 
    85541 > select add #22
    85542 
    85543 213918 atoms, 217560 bonds, 26494 residues, 2 models selected 
    85544 
    85545 > select subtract #22
    85546 
    85547 119262 atoms, 121296 bonds, 14790 residues, 25 models selected 
    85548 Alignment identifier is 4 
    85549 Alignment identifier is 5 
    85550 Alignment identifier is 6 
    85551 Alignment identifier is 7 
    85552 
    85553 > select #21/Aa-Ax:21
    85554 
    85555 264 atoms, 240 bonds, 24 residues, 1 model selected 
    85556 
    85557 > select #21/Aa-Ax
    85558 
    85559 33672 atoms, 34152 bonds, 4248 residues, 1 model selected 
    85560 
    85561 > select clear
    85562 
    85563 > select #22/a,d,c,b,e,h,k,n,q,t,x,g,j,m,p,s,w,v,u,f,i,l,o,r
    85564 
    85565 34272 atoms, 34776 bonds, 4320 residues, 1 model selected 
    85566 
    85567 > hide sel cartoons
    85568 
    85569 > select #21/Ay,Ba-Bd,Bf-Bi,Bk-Bn,Bp-Bs,Bu-Bx,Bz,Ca-Cb:1
    85570 
    85571 192 atoms, 168 bonds, 24 residues, 1 model selected 
    85572 
    85573 > select #21/Ay,Ba-Bd,Bf-Bi,Bk-Bn,Bp-Bs,Bu-Bx,Bz,Ca-Cb
    85574 
    85575 66384 atoms, 67560 bonds, 8160 residues, 1 model selected 
    85576 
    85577 > hide #!22 models
    85578 
    85579 > select clear
    85580 
    85581 > select #21/Ay,Ba-Bd,Bf-Bi,Bk-Bn,Bp-Bs,Bu-Bx,Bz,Ca-Cb:1
    85582 
    85583 192 atoms, 168 bonds, 24 residues, 1 model selected 
    85584 
    85585 > select #21/Ay,Ba-Bd,Bf-Bi,Bk-Bn,Bp-Bs,Bu-Bx,Bz,Ca-Cb
    85586 
    85587 66384 atoms, 67560 bonds, 8160 residues, 1 model selected 
    85588 
    85589 > hide sel cartoons
    85590 
    85591 > hide sel surfaces
    85592 
    85593 > show sel cartoons
    85594 
    85595 > select #21/Az,Be,Bj,Bo,Bt,By:1
    85596 
    85597 48 atoms, 42 bonds, 6 residues, 1 model selected 
    85598 
    85599 > select #21/Az,Be,Bj,Bo,Bt,By
    85600 
    85601 8478 atoms, 8664 bonds, 1050 residues, 1 model selected 
    85602 
    85603 > hide sel cartoons
    85604 
    85605 [Repeated 1 time(s)]
    85606 
    85607 > hide #!16 models
    85608 
    85609 > select #21/B1-B9,B0,CA-CB:111
    85610 
    85611 96 atoms, 84 bonds, 12 residues, 1 model selected 
    85612 
    85613 > select #21/B1-B9,B0,CA-CB
    85614 
    85615 10728 atoms, 10920 bonds, 1332 residues, 1 model selected 
    85616 
    85617 > hide sel cartoons
    85618 
    85619 > show #!22 models
    85620 
    85621 > select add #21
    85622 
    85623 119262 atoms, 121296 bonds, 14790 residues, 1 model selected 
    85624 
    85625 > select subtract #21
    85626 
    85627 Nothing selected 
    85628 Drag select of 15424 residues 
    85629 
    85630 > save /Users/shoichi/Desktop/MxiGmodel_Jian-8axn.pdb selectedOnly true
    85631 
    85632 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    85633 > YaleUniversity/Jun_Lab_documents/Websites/Models/MxiGmodel_Jian-8axn.pdb
    85634 
    85635 Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
    85636 YaleUniversity/Jun_Lab_documents/Websites/Models/MxiGmodel_Jian-8axn.pdb 
    85637 --- 
    85638 warnings | Start residue of secondary structure not found: HELIX 1 1 THR A 11 THR A 23 1 13 
    85639 Start residue of secondary structure not found: HELIX 2 2 GLN A 24 ASN A 40 1
    85640 17 
    85641 Start residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1
    85642 39 
    85643 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    85644 13 
    85645 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    85646 17 
    85647 133 messages similar to the above omitted 
    85648  
    85649 Chain information for MxiGmodel_Jian-8axn.pdb 
    85650 --- 
    85651 Chain | Description 
    85652 23.2/0 23.2/1 23.2/2 23.2/3 23.2/4 23.2/5 23.2/6 23.2/7 23.2/8 23.2/9 23.2/Y 23.2/Z 23.2/a0 23.2/b0 23.2/y 23.2/z | No description available 
    85653 23.2/A 23.2/B 23.2/D 23.2/E 23.2/G 23.2/H 23.2/J 23.2/K 23.2/M 23.2/N 23.2/P 23.2/Q 23.2/S 23.2/T 23.2/U 23.2/V | No description available 
    85654 23.1/Aa 23.1/Ab 23.1/Ac 23.1/Ad 23.1/Ae 23.1/Af 23.1/Ag 23.1/Ah 23.1/Ai 23.1/Aj 23.1/Ak 23.1/Al 23.1/Am 23.1/An 23.1/Ao 23.1/Ap 23.1/Aq 23.1/Ar 23.1/As 23.1/At 23.1/Au 23.1/Av 23.1/Aw 23.1/Ax | No description available 
    85655 23.1/Ay 23.1/Ba 23.1/Bb 23.1/Bc 23.1/Bd 23.1/Bf 23.1/Bg 23.1/Bh 23.1/Bi 23.1/Bk 23.1/Bl 23.1/Bm 23.1/Bn 23.1/Bp 23.1/Bq 23.1/Br 23.1/Bs 23.1/Bu 23.1/Bv 23.1/Bw 23.1/Bx 23.1/Bz 23.1/Ca 23.1/Cb | No description available 
    85656 23.2/C 23.2/F 23.2/I 23.2/L 23.2/O 23.2/R 23.2/W 23.2/X | No description available 
    85657  
    85658 
    85659 > close #20
    85660 
    85661 > close #22
    85662 
    85663 > select add #23
    85664 
    85665 224544 atoms, 126648 bonds, 27832 residues, 4 models selected 
    85666 
    85667 > hide sel atoms
    85668 
    85669 > show sel cartoons
    85670 
    85671 > close #21
    85672 
    85673 > select clear
    85674 
    85675 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    85676 > YaleUniversity/Jun_Lab_documents/Websites/Models/8axl.cif
    85677 
    85678 8axl.cif title: 
    85679 Outer membrane secretin pore of the type 3 secretion system of Shigella
    85680 flexneri [more info...] 
    85681  
    85682 Chain information for 8axl.cif #20 
    85683 --- 
    85684 Chain | Description | UniProt 
    85685 A B C D E F G H I J K L M N O | Outer membrane protein MxiD | MXID_SHIFL 1-566 
    85686  
    85687 
    85688 > show #!18 models
    85689 
    85690 > select add #20
    85691 
    85692 37650 atoms, 38160 bonds, 60 pseudobonds, 4800 residues, 2 models selected 
    85693 
    85694 > hide sel atoms
    85695 
    85696 > show sel cartoons
    85697 
    85698 > view matrix models #20,1,0,0,-69.565,0,1,0,-86.42,0,0,1,224.19
    85699 
    85700 > matchmaker #20 to #18
    85701 
    85702 Parameters 
    85703 --- 
    85704 Chain pairing | bb 
    85705 Alignment algorithm | Needleman-Wunsch 
    85706 Similarity matrix | BLOSUM-62 
    85707 SS fraction | 0.3 
    85708 Gap open (HH/SS/other) | 18/18/6 
    85709 Gap extend | 1 
    85710 SS matrix |  |  | H | S | O 
    85711 ---|---|---|--- 
    85712 H | 6 | -9 | -6 
    85713 S |  | 6 | -6 
    85714 O |  |  | 4 
    85715 Iteration cutoff | 2 
    85716  
    85717 Matchmaker combination, chain X (#18) with 8axl.cif, chain A (#20), sequence
    85718 alignment score = 1560.4 
    85719 RMSD between 320 pruned atom pairs is 0.001 angstroms; (across all 320 pairs:
    85720 0.001) 
    85721  
    85722 
    85723 > hide #!18 models
    85724 
    85725 > select subtract #20
    85726 
    85727 Nothing selected 
    85728 
    85729 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    85730 > YaleUniversity/Jun_Lab_documents/Websites/Models/6zni.pdb
    85731 
    85732 6zni.pdb title: 
    85733 Structure of the shigella mxih needle filament attached to the basal body
    85734 [more info...] 
    85735  
    85736 Chain information for 6zni.pdb #21 
    85737 --- 
    85738 Chain | Description | UniProt 
    85739 A B C D E F G H I J K L M N O P Q R S T U V W | protein mxih | MXIH_SHIFL 1-83 
    85740  
    85741 
    85742 > select add #21
    85743 
    85744 14812 atoms, 15019 bonds, 1886 residues, 1 model selected 
    85745 
    85746 > ui mousemode right "rotate selected models"
    85747 
    85748 > view matrix models
    85749 > #21,0.78066,-0.23011,0.58105,-32.728,-0.316,0.6568,0.68466,-11.662,-0.53918,-0.7181,0.44002,382.39
    85750 
    85751 > view matrix models
    85752 > #21,0.59856,-0.67653,-0.429,316.77,0.59033,0.0105,0.8071,-92.083,-0.54152,-0.73634,0.40566,394.11
    85753 
    85754 > view matrix models
    85755 > #21,-0.064308,0.99788,0.0099181,11.506,0.96056,0.064592,-0.27045,53.548,-0.27052,-0.0078654,-0.96268,483.39
    85756 
    85757 > ui mousemode right "translate selected models"
    85758 
    85759 > view matrix models
    85760 > #21,-0.064308,0.99788,0.0099181,60.254,0.96056,0.064592,-0.27045,137.33,-0.27052,-0.0078654,-0.96268,779.91
    85761 
    85762 > hide #!20 models
    85763 
    85764 > hide #!23 models
    85765 
    85766 > show #!12 models
    85767 
    85768 > hide sel atoms
    85769 
    85770 > show sel cartoons
    85771 
    85772 > fitmap #21 inMap #12
    85773 
    85774 Fit molecule 6zni.pdb (#21) to map Needle.mrc gaussian (#12) using 14812 atoms 
    85775 average map value = 0.06181, steps = 200 
    85776 shifted from previous position = 38.6 
    85777 rotated from previous position = 20.6 degrees 
    85778 atoms outside contour = 2366, contour level = 0.012281 
    85779  
    85780 Position of 6zni.pdb (#21) relative to Needle.mrc gaussian (#12) coordinates: 
    85781 Matrix rotation and translation 
    85782 -0.29857094 0.95276880 -0.05556094 132.63758028 
    85783 0.95438742 0.29805122 -0.01761031 0.41295711 
    85784 -0.00021855 -0.05828459 -0.99829999 726.72353822 
    85785 Axis -0.59204975 -0.80555695 0.02356055 
    85786 Axis point 58.40204108 0.00000000 364.39242169 
    85787 Rotation angle (degrees) 178.03148033 
    85788 Shift along axis -61.73869688 
    85789  
    85790 
    85791 > fitmap #21 inMap #12
    85792 
    85793 Fit molecule 6zni.pdb (#21) to map Needle.mrc gaussian (#12) using 14812 atoms 
    85794 average map value = 0.06181, steps = 28 
    85795 shifted from previous position = 0.104 
    85796 rotated from previous position = 1.1 degrees 
    85797 atoms outside contour = 2373, contour level = 0.012281 
    85798  
    85799 Position of 6zni.pdb (#21) relative to Needle.mrc gaussian (#12) coordinates: 
    85800 Matrix rotation and translation 
    85801 -0.31681368 0.94681893 -0.05624065 137.76386323 
    85802 0.94848731 0.31631597 -0.01777728 -2.09579099 
    85803 0.00095795 -0.05897563 -0.99825896 726.51810645 
    85804 Axis -0.58428457 -0.81120384 0.02366142 
    85805 Axis point 61.72467869 0.00000000 364.33458089 
    85806 Rotation angle (degrees) 177.97959679 
    85807 Shift along axis -61.60273696 
    85808  
    85809 
    85810 > color #12 #b2ffb251 models
    85811 
    85812 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    85813 > YaleUniversity/Jun_Lab_documents/Websites/Models/6zni.pdb
    85814 
    85815 6zni.pdb title: 
    85816 Structure of the shigella mxih needle filament attached to the basal body
    85817 [more info...] 
    85818  
    85819 Chain information for 6zni.pdb #22 
    85820 --- 
    85821 Chain | Description | UniProt 
    85822 A B C D E F G H I J K L M N O P Q R S T U V W | protein mxih | MXIH_SHIFL 1-83 
    85823  
    85824 
    85825 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    85826 > YaleUniversity/Jun_Lab_documents/Websites/Models/6zni.pdb
    85827 
    85828 6zni.pdb title: 
    85829 Structure of the shigella mxih needle filament attached to the basal body
    85830 [more info...] 
    85831  
    85832 Chain information for 6zni.pdb #24 
    85833 --- 
    85834 Chain | Description | UniProt 
    85835 A B C D E F G H I J K L M N O P Q R S T U V W | protein mxih | MXIH_SHIFL 1-83 
    85836  
    85837 
    85838 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    85839 > YaleUniversity/Jun_Lab_documents/Websites/Models/6zni.pdb
    85840 
    85841 6zni.pdb title: 
    85842 Structure of the shigella mxih needle filament attached to the basal body
    85843 [more info...] 
    85844  
    85845 Chain information for 6zni.pdb #25 
    85846 --- 
    85847 Chain | Description | UniProt 
    85848 A B C D E F G H I J K L M N O P Q R S T U V W | protein mxih | MXIH_SHIFL 1-83 
    85849  
    85850 
    85851 > matchmaker #22 to #21
    85852 
    85853 Parameters 
    85854 --- 
    85855 Chain pairing | bb 
    85856 Alignment algorithm | Needleman-Wunsch 
    85857 Similarity matrix | BLOSUM-62 
    85858 SS fraction | 0.3 
    85859 Gap open (HH/SS/other) | 18/18/6 
    85860 Gap extend | 1 
    85861 SS matrix |  |  | H | S | O 
    85862 ---|---|---|--- 
    85863 H | 6 | -9 | -6 
    85864 S |  | 6 | -6 
    85865 O |  |  | 4 
    85866 Iteration cutoff | 2 
    85867  
    85868 Matchmaker 6zni.pdb, chain A (#21) with 6zni.pdb, chain A (#22), sequence
    85869 alignment score = 488.1 
    85870 RMSD between 82 pruned atom pairs is 0.000 angstroms; (across all 82 pairs:
    85871 0.000) 
    85872  
    85873 
    85874 > matchmaker #24 to #21
    85875 
    85876 Parameters 
    85877 --- 
    85878 Chain pairing | bb 
    85879 Alignment algorithm | Needleman-Wunsch 
    85880 Similarity matrix | BLOSUM-62 
    85881 SS fraction | 0.3 
    85882 Gap open (HH/SS/other) | 18/18/6 
    85883 Gap extend | 1 
    85884 SS matrix |  |  | H | S | O 
    85885 ---|---|---|--- 
    85886 H | 6 | -9 | -6 
    85887 S |  | 6 | -6 
    85888 O |  |  | 4 
    85889 Iteration cutoff | 2 
    85890  
    85891 Matchmaker 6zni.pdb, chain A (#21) with 6zni.pdb, chain A (#24), sequence
    85892 alignment score = 488.1 
    85893 RMSD between 82 pruned atom pairs is 0.000 angstroms; (across all 82 pairs:
    85894 0.000) 
    85895  
    85896 
    85897 > matchmaker #25 to #21
    85898 
    85899 Parameters 
    85900 --- 
    85901 Chain pairing | bb 
    85902 Alignment algorithm | Needleman-Wunsch 
    85903 Similarity matrix | BLOSUM-62 
    85904 SS fraction | 0.3 
    85905 Gap open (HH/SS/other) | 18/18/6 
    85906 Gap extend | 1 
    85907 SS matrix |  |  | H | S | O 
    85908 ---|---|---|--- 
    85909 H | 6 | -9 | -6 
    85910 S |  | 6 | -6 
    85911 O |  |  | 4 
    85912 Iteration cutoff | 2 
    85913  
    85914 Matchmaker 6zni.pdb, chain A (#21) with 6zni.pdb, chain A (#25), sequence
    85915 alignment score = 488.1 
    85916 RMSD between 82 pruned atom pairs is 0.000 angstroms; (across all 82 pairs:
    85917 0.000) 
    85918  
    85919 
    85920 > view orient
    85921 
    85922 > turn x 90
    85923 
    85924 [Repeated 2 time(s)]
    85925 
    85926 > select add #22
    85927 
    85928 29624 atoms, 30038 bonds, 3772 residues, 2 models selected 
    85929 
    85930 > select add #24
    85931 
    85932 44436 atoms, 45057 bonds, 5658 residues, 3 models selected 
    85933 
    85934 > select add #25
    85935 
    85936 59248 atoms, 60076 bonds, 7544 residues, 4 models selected 
    85937 
    85938 > hide sel atoms
    85939 
    85940 > show sel cartoons
    85941 
    85942 > select subtract #21
    85943 
    85944 44436 atoms, 45057 bonds, 5658 residues, 3 models selected 
    85945 
    85946 > view matrix models
    85947 > #22,-0.31681,0.94682,-0.056241,139.82,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,822.41,#24,-0.31681,0.94682,-0.056241,139.82,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,822.41,#25,-0.31681,0.94682,-0.056241,139.82,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,822.41
    85948 
    85949 > ui mousemode right "rotate selected models"
    85950 
    85951 > ui mousemode right "translate selected models"
    85952 
    85953 > view matrix models
    85954 > #22,-0.31681,0.94682,-0.056241,140.02,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,828.95,#24,-0.31681,0.94682,-0.056241,140.02,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,828.95,#25,-0.31681,0.94682,-0.056241,140.02,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,828.95
    85955 
    85956 > view orient
    85957 
    85958 > turn x 90
    85959 
    85960 [Repeated 2 time(s)]
    85961 
    85962 > select subtract #22
    85963 
    85964 29624 atoms, 30038 bonds, 3772 residues, 2 models selected 
    85965 
    85966 > view matrix models
    85967 > #24,-0.31681,0.94682,-0.056241,138.54,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,940.33,#25,-0.31681,0.94682,-0.056241,138.54,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,940.33
    85968 
    85969 > select subtract #24
    85970 
    85971 14812 atoms, 15019 bonds, 1886 residues, 1 model selected 
    85972 
    85973 > view matrix models
    85974 > #25,-0.31681,0.94682,-0.056241,138.13,0.94849,0.31632,-0.017777,-2.0958,0.00095795,-0.058976,-0.99826,1032.7
    85975 
    85976 > select clear
    85977 
    85978 > combine #21,22,24,25
    85979 
    85980 Remapping chain ID 'A' in 6zni.pdb #22 to 'X' 
    85981 Remapping chain ID 'B' in 6zni.pdb #22 to 'Y' 
    85982 Remapping chain ID 'C' in 6zni.pdb #22 to 'Z' 
    85983 Remapping chain ID 'D' in 6zni.pdb #22 to 'a' 
    85984 Remapping chain ID 'E' in 6zni.pdb #22 to 'b' 
    85985 Remapping chain ID 'F' in 6zni.pdb #22 to 'c' 
    85986 Remapping chain ID 'G' in 6zni.pdb #22 to 'd' 
    85987 Remapping chain ID 'H' in 6zni.pdb #22 to 'e' 
    85988 Remapping chain ID 'I' in 6zni.pdb #22 to 'f' 
    85989 Remapping chain ID 'J' in 6zni.pdb #22 to 'g' 
    85990 Remapping chain ID 'K' in 6zni.pdb #22 to 'h' 
    85991 Remapping chain ID 'L' in 6zni.pdb #22 to 'i' 
    85992 Remapping chain ID 'M' in 6zni.pdb #22 to 'j' 
    85993 Remapping chain ID 'N' in 6zni.pdb #22 to 'k' 
    85994 Remapping chain ID 'O' in 6zni.pdb #22 to 'l' 
    85995 Remapping chain ID 'P' in 6zni.pdb #22 to 'm' 
    85996 Remapping chain ID 'Q' in 6zni.pdb #22 to 'n' 
    85997 Remapping chain ID 'R' in 6zni.pdb #22 to 'o' 
    85998 Remapping chain ID 'S' in 6zni.pdb #22 to 'p' 
    85999 Remapping chain ID 'T' in 6zni.pdb #22 to 'q' 
    86000 Remapping chain ID 'U' in 6zni.pdb #22 to 'r' 
    86001 Remapping chain ID 'V' in 6zni.pdb #22 to 's' 
    86002 Remapping chain ID 'W' in 6zni.pdb #22 to 't' 
    86003 Remapping chain ID 'A' in 6zni.pdb #24 to 'u' 
    86004 Remapping chain ID 'B' in 6zni.pdb #24 to 'v' 
    86005 Remapping chain ID 'C' in 6zni.pdb #24 to 'w' 
    86006 Remapping chain ID 'D' in 6zni.pdb #24 to 'x' 
    86007 Remapping chain ID 'E' in 6zni.pdb #24 to 'y' 
    86008 Remapping chain ID 'F' in 6zni.pdb #24 to 'z' 
    86009 Remapping chain ID 'G' in 6zni.pdb #24 to '1' 
    86010 Remapping chain ID 'H' in 6zni.pdb #24 to '2' 
    86011 Remapping chain ID 'I' in 6zni.pdb #24 to '3' 
    86012 Remapping chain ID 'J' in 6zni.pdb #24 to '4' 
    86013 Remapping chain ID 'K' in 6zni.pdb #24 to '5' 
    86014 Remapping chain ID 'L' in 6zni.pdb #24 to '6' 
    86015 Remapping chain ID 'M' in 6zni.pdb #24 to '7' 
    86016 Remapping chain ID 'N' in 6zni.pdb #24 to '8' 
    86017 Remapping chain ID 'O' in 6zni.pdb #24 to '9' 
    86018 Remapping chain ID 'P' in 6zni.pdb #24 to '0' 
    86019 Remapping chain ID 'Q' in 6zni.pdb #24 to 'AA' 
    86020 Remapping chain ID 'R' in 6zni.pdb #24 to 'AB' 
    86021 Remapping chain ID 'S' in 6zni.pdb #24 to 'AC' 
    86022 Remapping chain ID 'T' in 6zni.pdb #24 to 'AD' 
    86023 Remapping chain ID 'U' in 6zni.pdb #24 to 'AE' 
    86024 Remapping chain ID 'V' in 6zni.pdb #24 to 'AF' 
    86025 Remapping chain ID 'W' in 6zni.pdb #24 to 'AG' 
    86026 Remapping chain ID 'A' in 6zni.pdb #25 to 'AH' 
    86027 Remapping chain ID 'B' in 6zni.pdb #25 to 'AI' 
    86028 Remapping chain ID 'C' in 6zni.pdb #25 to 'AJ' 
    86029 Remapping chain ID 'D' in 6zni.pdb #25 to 'AK' 
    86030 Remapping chain ID 'E' in 6zni.pdb #25 to 'AL' 
    86031 Remapping chain ID 'F' in 6zni.pdb #25 to 'AM' 
    86032 Remapping chain ID 'G' in 6zni.pdb #25 to 'AN' 
    86033 Remapping chain ID 'H' in 6zni.pdb #25 to 'AO' 
    86034 Remapping chain ID 'I' in 6zni.pdb #25 to 'AP' 
    86035 Remapping chain ID 'J' in 6zni.pdb #25 to 'AQ' 
    86036 Remapping chain ID 'K' in 6zni.pdb #25 to 'AR' 
    86037 Remapping chain ID 'L' in 6zni.pdb #25 to 'AS' 
    86038 Remapping chain ID 'M' in 6zni.pdb #25 to 'AT' 
    86039 Remapping chain ID 'N' in 6zni.pdb #25 to 'AU' 
    86040 Remapping chain ID 'O' in 6zni.pdb #25 to 'AV' 
    86041 Remapping chain ID 'P' in 6zni.pdb #25 to 'AW' 
    86042 Remapping chain ID 'Q' in 6zni.pdb #25 to 'AX' 
    86043 Remapping chain ID 'R' in 6zni.pdb #25 to 'AY' 
    86044 Remapping chain ID 'S' in 6zni.pdb #25 to 'AZ' 
    86045 Remapping chain ID 'T' in 6zni.pdb #25 to 'Aa' 
    86046 Remapping chain ID 'U' in 6zni.pdb #25 to 'Ab' 
    86047 Remapping chain ID 'V' in 6zni.pdb #25 to 'Ac' 
    86048 Remapping chain ID 'W' in 6zni.pdb #25 to 'Ad' 
    86049 
    86050 > hide #21 models
    86051 
    86052 > hide #22 models
    86053 
    86054 > hide #24 models
    86055 
    86056 > hide #25 models
    86057 
    86058 > show #!23 models
    86059 
    86060 > show #!18 models
    86061 
    86062 > hide #!18 models
    86063 
    86064 > show #!20 models
    86065 
    86066 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    86067 > YaleUniversity/Jun_Lab_documents/Websites/Models/4a5p.pdb
    86068 
    86069 4a5p.pdb title: 
    86070 Structure of the shigella flexneri mxia protein [more info...] 
    86071  
    86072 Chain information for 4a5p.pdb #27 
    86073 --- 
    86074 Chain | Description | UniProt 
    86075 A B C | protein VIRH | MXIA_SHIFL 318-686 
    86076  
    86077 Non-standard residues in 4a5p.pdb #27 
    86078 --- 
    86079 EDO — 1,2-ethanediol (ethylene glycol) 
    86080  
    86081 7 atoms have alternate locations. Control/examine alternate locations with
    86082 Altloc Explorer [start tool...] or the altlocs command. 
    86083 
    86084 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    86085 > YaleUniversity/Jun_Lab_documents/Websites/Models/4a5p.pdb1
    86086 
    86087 4a5p.pdb1 title: 
    86088 Structure of the shigella flexneri mxia protein [more info...] 
    86089  
    86090 7 atoms have alternate locations. Control/examine alternate locations with
    86091 Altloc Explorer [start tool...] or the altlocs command. 
    86092 7 atoms have alternate locations. Control/examine alternate locations with
    86093 Altloc Explorer [start tool...] or the altlocs command. 
    86094 Chain information for 4a5p.pdb1 
    86095 --- 
    86096 Chain | Description 
    86097 28.1/A 28.1/B 28.1/C | No description available 
    86098 28.2/A 28.3/A | No description available 
    86099 28.2/B 28.3/B | No description available 
    86100 28.2/C 28.3/C | No description available 
    86101  
    86102 7 atoms have alternate locations. Control/examine alternate locations with
    86103 Altloc Explorer [start tool...] or the altlocs command. 
    86104 
    86105 > close #27
    86106 
    86107 > select add #28
    86108 
    86109 22242 atoms, 22458 bonds, 33 pseudobonds, 2745 residues, 7 models selected 
    86110 
    86111 > hide #!20 models
    86112 
    86113 > hide #!23 models
    86114 
    86115 > hide #!12 models
    86116 
    86117 > hide #26 models
    86118 
    86119 > show #!10 models
    86120 
    86121 > view matrix models #28,1,0,0,274.61,0,1,0,310.47,0,0,1,23.308
    86122 
    86123 > view matrix models #28,1,0,0,298.19,0,1,0,239.33,0,0,1,182.08
    86124 
    86125 > ui mousemode right "rotate selected models"
    86126 
    86127 > view matrix models
    86128 > #28,0.7761,0.63004,0.026991,292.44,0.62918,-0.77651,0.034219,247.77,0.042518,-0.0095748,-0.99905,293.21
    86129 
    86130 > ui mousemode right "translate selected models"
    86131 
    86132 > view matrix models
    86133 > #28,0.7761,0.63004,0.026991,261.93,0.62918,-0.77651,0.034219,258.81,0.042518,-0.0095748,-0.99905,382.2
    86134 
    86135 > view matrix models
    86136 > #28,0.7761,0.63004,0.026991,257.17,0.62918,-0.77651,0.034219,256.4,0.042518,-0.0095748,-0.99905,381.79
    86137 
    86138 > combine #28
    86139 
    86140 Remapping chain ID 'A' in 4a5p.pdb1 #28.2 to 'D' 
    86141 Remapping chain ID 'B' in 4a5p.pdb1 #28.2 to 'E' 
    86142 Remapping chain ID 'C' in 4a5p.pdb1 #28.2 to 'F' 
    86143 Remapping chain ID 'A' in 4a5p.pdb1 #28.3 to 'G' 
    86144 Remapping chain ID 'B' in 4a5p.pdb1 #28.3 to 'H' 
    86145 Remapping chain ID 'C' in 4a5p.pdb1 #28.3 to 'I' 
    86146 
    86147 > close #28
    86148 
    86149 > fitmap #27 inMap #10
    86150 
    86151 Fit molecule combination (#27) to map MxiA.mrc gaussian (#10) using 22242
    86152 atoms 
    86153 average map value = 0.05827, steps = 56 
    86154 shifted from previous position = 9.4 
    86155 rotated from previous position = 3.42 degrees 
    86156 atoms outside contour = 2863, contour level = 0.019047 
    86157  
    86158 Position of combination (#27) relative to MxiA.mrc gaussian (#10) coordinates: 
    86159 Matrix rotation and translation 
    86160 0.80161758 0.59783594 0.00119784 256.79406485 
    86161 0.59783710 -0.80161669 -0.00121864 256.80090367 
    86162 0.00023166 0.00169299 -0.99999854 390.87730243 
    86163 Axis 0.94910936 0.31494648 0.00037653 
    86164 Axis point 0.00000000 85.63611045 195.45014568 
    86165 Rotation angle (degrees) 179.91211531 
    86166 Shift along axis 324.75136672 
    86167  
    86168 
    86169 > fitmap #27 inMap #10
    86170 
    86171 Fit molecule combination (#27) to map MxiA.mrc gaussian (#10) using 22242
    86172 atoms 
    86173 average map value = 0.05827, steps = 44 
    86174 shifted from previous position = 0.00845 
    86175 rotated from previous position = 0.00998 degrees 
    86176 atoms outside contour = 2864, contour level = 0.019047 
    86177  
    86178 Position of combination (#27) relative to MxiA.mrc gaussian (#10) coordinates: 
    86179 Matrix rotation and translation 
    86180 0.80161460 0.59783962 0.00134779 256.78414266 
    86181 0.59784100 -0.80161391 -0.00113018 256.79761361 
    86182 0.00040474 0.00171173 -0.99999845 390.86914264 
    86183 Axis 0.94910857 0.31494874 0.00046162 
    86184 Axis point 0.00000000 85.63956603 195.43305746 
    86185 Rotation angle (degrees) 179.91421985 
    86186 Shift along axis 324.77454690 
    86187  
    86188 
    86189 > fitmap #27 inMap #10
    86190 
    86191 Fit molecule combination (#27) to map MxiA.mrc gaussian (#10) using 22242
    86192 atoms 
    86193 average map value = 0.05827, steps = 44 
    86194 shifted from previous position = 0.0089 
    86195 rotated from previous position = 0.0587 degrees 
    86196 atoms outside contour = 2868, contour level = 0.019047 
    86197  
    86198 Position of combination (#27) relative to MxiA.mrc gaussian (#10) coordinates: 
    86199 Matrix rotation and translation 
    86200 0.80160920 0.59784750 0.00102281 256.80554474 
    86201 0.59784794 -0.80160952 -0.00015900 256.73242545 
    86202 0.00072484 0.00073894 -0.99999946 390.86381964 
    86203 Axis 0.94910698 0.31495352 0.00046032 
    86204 Axis point 0.00000000 85.70810059 195.38887860 
    86205 Rotation angle (degrees) 179.97289645 
    86206 Shift along axis 324.77463920 
    86207  
    86208 
    86209 > show #!16 models
    86210 
    86211 > color #16 #ffa97874 models
    86212 
    86213 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    86214 > YaleUniversity/Jun_Lab_documents/Websites/Models/AlphaFold-
    86215 > Spa33model-C6_2024-08_27.pdb
    86216 
    86217 Chain information for AlphaFold-Spa33model-C6_2024-08_27.pdb 
    86218 --- 
    86219 Chain | Description 
    86220 28.1/A 28.2/A 28.3/A 28.4/A 28.5/A 28.6/A 28.1/B 28.2/B 28.3/B 28.4/B 28.5/B 28.6/B | No description available 
    86221 28.1/C 28.2/C 28.3/C 28.4/C 28.5/C 28.6/C | No description available 
    86222  
    86223 
    86224 > select add #28
    86225 
    86226 23868 atoms, 24252 bonds, 2982 residues, 7 models selected 
    86227 
    86228 > view orient
    86229 
    86230 > turn x 90
    86231 
    86232 [Repeated 1 time(s)]
    86233 
    86234 > ui tool show "Side View"
    86235 
    86236 > ui mousemode right "rotate selected models"
    86237 
    86238 > view matrix models
    86239 > #28,0.99355,0.11343,2.5187e-17,-27.575,-0.11343,0.99355,-1.4331e-18,30.902,-2.5187e-17,-1.4331e-18,1,3.1371e-16
    86240 
    86241 > turn x 90
    86242 
    86243 [Repeated 2 time(s)]
    86244 
    86245 > select subtract #28.1
    86246 
    86247 19890 atoms, 20210 bonds, 2485 residues, 6 models selected 
    86248 
    86249 > select add #28
    86250 
    86251 23868 atoms, 24252 bonds, 2982 residues, 7 models selected 
    86252 
    86253 > select subtract #28.2
    86254 
    86255 19890 atoms, 20210 bonds, 2485 residues, 6 models selected 
    86256 
    86257 > select subtract #28.3
    86258 
    86259 15912 atoms, 16168 bonds, 1988 residues, 5 models selected 
    86260 
    86261 > select subtract #28.4
    86262 
    86263 11934 atoms, 12126 bonds, 1491 residues, 4 models selected 
    86264 
    86265 > select subtract #28.5
    86266 
    86267 7956 atoms, 8084 bonds, 994 residues, 3 models selected 
    86268 
    86269 > select subtract #28.6
    86270 
    86271 3978 atoms, 4042 bonds, 497 residues, 2 models selected 
    86272 Alignment identifier is 1 
    86273 Alignment identifier is 28.1/C 
    86274 
    86275 > select #28.1/C:1
    86276 
    86277 8 atoms, 7 bonds, 1 residue, 1 model selected 
    86278 
    86279 > select #28.1/C:1-2
    86280 
    86281 16 atoms, 15 bonds, 2 residues, 1 model selected 
    86282 
    86283 > select #28.1/A-B:28-29
    86284 
    86285 38 atoms, 38 bonds, 4 residues, 1 model selected 
    86286 
    86287 > select #28.1/A-B:1-29
    86288 
    86289 444 atoms, 446 bonds, 58 residues, 1 model selected 
    86290 
    86291 > hide sel cartoons
    86292 
    86293 > select #28.1/C:292-293
    86294 
    86295 19 atoms, 18 bonds, 2 residues, 1 model selected 
    86296 
    86297 > select #28.1/C
    86298 
    86299 2350 atoms, 2390 bonds, 293 residues, 1 model selected 
    86300 
    86301 The cached device pixel ratio value was stale on window expose. Please file a
    86302 QTBUG which explains how to reproduce. 
    86303 
    86304 > select add #28.1
    86305 
    86306 3978 atoms, 4042 bonds, 497 residues, 1 model selected 
    86307 
    86308 > select #28.1/A-B:1-2
    86309 
    86310 30 atoms, 28 bonds, 4 residues, 1 model selected 
    86311 
    86312 > select #28.1/A-B:1
    86313 
    86314 14 atoms, 12 bonds, 2 residues, 1 model selected 
    86315 
    86316 > hide #!16 models
    86317 
    86318 Drag select of 439 residues 
    86319 
    86320 > save /Users/shoichi/Desktop/Spa33model-mono.pdb selectedOnly true
    86321 
    86322 > select add #28
    86323 
    86324 23868 atoms, 24252 bonds, 2982 residues, 7 models selected 
    86325 
    86326 > close #28
    86327 
    86328 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    86329 > YaleUniversity/Jun_Lab_documents/Websites/Models/Spa33model-mono.pdb
    86330 
    86331 Summary of feedback from opening /Users/shoichi/Library/CloudStorage/OneDrive-
    86332 YaleUniversity/Jun_Lab_documents/Websites/Models/Spa33model-mono.pdb 
    86333 --- 
    86334 warnings | Start residue of secondary structure not found: HELIX 1 1 THR A 11 THR A 23 1 13 
    86335 Start residue of secondary structure not found: HELIX 2 2 GLN A 24 ASN A 40 1
    86336 17 
    86337 Start residue of secondary structure not found: HELIX 3 3 ASN A 43 ASN A 81 1
    86338 39 
    86339 Start residue of secondary structure not found: HELIX 4 4 THR B 11 THR B 23 1
    86340 13 
    86341 Start residue of secondary structure not found: HELIX 5 5 GLN B 24 ASN B 40 1
    86342 17 
    86343 64 messages similar to the above omitted 
    86344  
    86345 Chain information for Spa33model-mono.pdb #28 
    86346 --- 
    86347 Chain | Description 
    86348 A B | No description available 
    86349 C | No description available 
    86350  
    86351 
    86352 > show #!16 models
    86353 
    86354 > select add #28
    86355 
    86356 3534 atoms, 3594 bonds, 439 residues, 1 model selected 
    86357 
    86358 > ui mousemode right "translate selected models"
    86359 
    86360 > view matrix models #28,1,0,0,3.3589,0,1,0,0.82161,0,0,1,29.811
    86361 
    86362 > ui mousemode right "rotate selected models"
    86363 
    86364 > view matrix models
    86365 > #28,0.99428,0.10602,-0.013231,-7.1066,-0.1061,0.99434,-0.0053161,31.3,0.012592,0.0066894,0.9999,25.508
    86366 
    86367 > ui mousemode right "translate selected models"
    86368 
    86369 > view matrix models
    86370 > #28,0.99428,0.10602,-0.013231,-9.1113,-0.1061,0.99434,-0.0053161,32.259,0.012592,0.0066894,0.9999,25.674
    86371 
    86372 > ui mousemode right "rotate selected models"
    86373 
    86374 > view matrix models
    86375 > #28,0.99682,0.078395,-0.014205,-5.7599,-0.078466,0.99691,-0.0045742,24.301,0.013802,0.0056743,0.99989,25.491
    86376 
    86377 > view matrix models
    86378 > #28,0.98842,0.073651,0.13264,-32.999,-0.06973,0.99699,-0.033978,27.974,-0.13474,0.024336,0.99058,64.85
    86379 
    86380 > ui mousemode right "translate selected models"
    86381 
    86382 > view matrix models
    86383 > #28,0.98842,0.073651,0.13264,-31.781,-0.06973,0.99699,-0.033978,27.558,-0.13474,0.024336,0.99058,68.423
    86384 
    86385 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    86386 > YaleUniversity/Jun_Lab_documents/Websites/Models/MxiNmodelC6.pdb
    86387 
    86388 Chain information for MxiNmodelC6.pdb 
    86389 --- 
    86390 Chain | Description 
    86391 29.1/A 29.3/A 29.5/A 29.7/A 29.9/A 29.11/A 29.2/B 29.4/B 29.6/B 29.8/B 29.10/B 29.12/B | No description available 
    86392  
    86393 
    86394 > view orient
    86395 
    86396 > turn x 90
    86397 
    86398 [Repeated 1 time(s)]
    86399 
    86400 > select add #29
    86401 
    86402 26118 atoms, 26478 bonds, 3211 residues, 14 models selected 
    86403 
    86404 > select subtract #28
    86405 
    86406 22584 atoms, 22884 bonds, 2772 residues, 13 models selected 
    86407 
    86408 > ui mousemode right "rotate selected models"
    86409 
    86410 > view matrix models
    86411 > #29,0.99286,0.11925,2.648e-17,-28.899,-0.11925,0.99286,-1.5846e-18,32.578,-2.648e-17,-1.5846e-18,1,3.6932e-16
    86412 
    86413 > view orient
    86414 
    86415 > turn x 90
    86416 
    86417 [Repeated 2 time(s)]
    86418 
    86419 > ui mousemode right "translate selected models"
    86420 
    86421 > view matrix models
    86422 > #29,0.99286,0.11925,2.648e-17,-29.955,-0.11925,0.99286,-1.5846e-18,32.578,-2.648e-17,-1.5846e-18,1,23.679
    86423 
    86424 > view matrix models
    86425 > #29,0.99286,0.11925,2.648e-17,-30.072,-0.11925,0.99286,-1.5846e-18,32.347,-2.648e-17,-1.5846e-18,1,25.236
    86426 
    86427 > view orient
    86428 
    86429 > sym #28 C6 copies true center #12
    86430 
    86431 Made 6 copies for Spa33model-mono.pdb symmetry C6 
    86432 
    86433 > view orient
    86434 
    86435 > turn x 90
    86436 
    86437 [Repeated 2 time(s)]
    86438 
    86439 > view matrix models
    86440 > #29,0.99286,0.11925,2.648e-17,-30.05,-0.11925,0.99286,-1.5846e-18,32.347,-2.648e-17,-1.5846e-18,1,29.438
    86441 
    86442 > turn y 10
    86443 
    86444 [Repeated 3 time(s)]
    86445 
    86446 > select subtract #29
    86447 
    86448 Nothing selected 
    86449 
    86450 > select add #30
    86451 
    86452 21204 atoms, 21564 bonds, 2634 residues, 7 models selected 
    86453 
    86454 > view matrix models #30,1,0,0,0.1321,0,1,0,-0.11085,0,0,1,2.1183
    86455 
    86456 > select #16
    86457 
    86458 2 models selected 
    86459 
    86460 > select clear
    86461 
    86462 > color #16 #424242ff models
    86463 
    86464 > color #16 #4242424d models
    86465 
    86466 > color #16 #42424233 models
    86467 
    86468 > color #10 #42424233 models
    86469 
    86470 > show #!11 models
    86471 
    86472 > show #!12 models
    86473 
    86474 > show #26 models
    86475 
    86476 > color #12 #b2ffb252 models
    86477 
    86478 > hide #!27 models
    86479 
    86480 > show #!27 models
    86481 
    86482 > close #28
    86483 
    86484 > show #!18 models
    86485 
    86486 > hide #!18 models
    86487 
    86488 > show #!23 models
    86489 
    86490 > show #!20 models
    86491 
    86492 > show #21 models
    86493 
    86494 > hide #21 models
    86495 
    86496 > show #22 models
    86497 
    86498 > hide #22 models
    86499 
    86500 > show #24 models
    86501 
    86502 > hide #24 models
    86503 
    86504 > close #22
    86505 
    86506 > close #24-25
    86507 
    86508 > show #!14 models
    86509 
    86510 > show #!9 models
    86511 
    86512 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    86513 > YaleUniversity/Jun_Lab_documents/Websites/Models/fold_2025_06_16_13_31mxik/fold_2025_06_16_13_31mxik_model_0.cif
    86514 
    86515 Chain information for fold_2025_06_16_13_31mxik_model_0.cif #22 
    86516 --- 
    86517 Chain | Description 
    86518 A | . 
    86519  
    86520 
    86521 > hide #!9 models
    86522 
    86523 > select add #22
    86524 
    86525 1414 atoms, 1445 bonds, 175 residues, 1 model selected 
    86526 
    86527 > view matrix models #22,1,0,0,91.432,0,1,0,335.13,0,0,1,388.61
    86528 
    86529 > view matrix models #22,1,0,0,128.29,0,1,0,329.95,0,0,1,306.4
    86530 
    86531 > ui mousemode right "rotate selected models"
    86532 
    86533 > view matrix models
    86534 > #22,-0.11878,-0.65273,-0.74822,124.94,0.81954,-0.48989,0.29727,330.92,-0.56058,-0.57788,0.59313,304.54
    86535 
    86536 > view matrix models
    86537 > #22,0.16567,-0.62276,0.76467,131.39,-0.67292,0.49544,0.54929,332.16,-0.72093,-0.60556,-0.33699,300.57
    86538 
    86539 > view matrix models
    86540 > #22,0.21314,-0.86239,0.45919,130.04,-0.63741,0.23345,0.73431,332.9,-0.74046,-0.4492,-0.49994,299.91
    86541 
    86542 > view matrix models
    86543 > #22,-0.71739,-0.38059,-0.58352,125.69,0.67925,-0.56824,-0.46446,327.66,-0.15481,-0.72956,0.66617,304.82
    86544 
    86545 > view matrix models
    86546 > #22,-0.90279,-0.32322,-0.28371,126.97,0.42619,-0.58384,-0.69101,326.68,0.057709,-0.74476,0.66484,304.82
    86547 
    86548 > ui mousemode right "translate selected models"
    86549 
    86550 > view matrix models
    86551 > #22,-0.90279,-0.32322,-0.28371,134.79,0.42619,-0.58384,-0.69101,287.94,0.057709,-0.74476,0.66484,313.78
    86552 
    86553 > show #!9 models
    86554 
    86555 > ui mousemode right "rotate selected models"
    86556 
    86557 > view matrix models
    86558 > #22,-0.95361,0.27808,-0.11531,135.64,0.29232,0.76378,-0.57549,288.72,-0.071963,-0.5825,-0.80964,307.54
    86559 
    86560 > view matrix models
    86561 > #22,-0.93015,0.29609,0.21713,137.06,0.32764,0.93625,0.12683,291.74,-0.16573,0.18911,-0.96787,307.04
    86562 
    86563 > show #!17 models
    86564 
    86565 > hide #!17 models
    86566 
    86567 > hide #!16 models
    86568 
    86569 > view matrix models
    86570 > #22,-0.90664,0.35768,0.22374,137.1,0.37455,0.92648,0.036651,291.36,-0.19418,0.11703,-0.97396,306.99
    86571 
    86572 > show #!16 models
    86573 
    86574 > view orient
    86575 
    86576 > turn x 90
    86577 
    86578 [Repeated 1 time(s)]
    86579 
    86580 > sym #22 C6 copies true center #12
    86581 
    86582 Made 6 copies for fold_2025_06_16_13_31mxik_model_0.cif symmetry C6 
    86583 
    86584 > color #9 #bddbb4ff models
    86585 
    86586 > color #9 #bddbb49a models
    86587 
    86588 > color #9 #bddbb480 models
    86589 
    86590 > color #9 #bddbb474 models
    86591 
    86592 > color #9 #bddbb466 models
    86593 
    86594 > color #14 #9ad5ad86 models
    86595 
    86596 > color #14 #9ad5ad44 models
    86597 
    86598 > color #14 #9ad5ad37 models
    86599 
    86600 > color #14 #9ad5ad38 models
    86601 
    86602 > show #!13 models
    86603 
    86604 > select subtract #22
    86605 
    86606 Nothing selected 
    86607 
    86608 > close #22
    86609 
    86610 > hide #!30 models
    86611 
    86612 > hide #!29 models
    86613 
    86614 > hide #!27 models
    86615 
    86616 > hide #26 models
    86617 
    86618 > hide #!24 models
    86619 
    86620 > hide #!23 models
    86621 
    86622 > show #!27 models
    86623 
    86624 > hide #!27 models
    86625 
    86626 > show #26 models
    86627 
    86628 > select add #26
    86629 
    86630 59248 atoms, 60076 bonds, 7544 residues, 1 model selected 
    86631 
    86632 > color #26 #929292ff
    86633 
    86634 > color #26 #919191ff
    86635 
    86636 > hide sel cartoons
    86637 
    86638 > show sel surfaces
    86639 
    86640 > lighting simple
    86641 
    86642 > select subtract #26
    86643 
    86644 92 models selected 
    86645 
    86646 > select add #20
    86647 
    86648 37650 atoms, 38160 bonds, 60 pseudobonds, 4800 residues, 2 models selected 
    86649 
    86650 > color #20 #8e9157ff
    86651 
    86652 > color #20 #8f9155ff
    86653 
    86654 > color #20 #e0e385ff
    86655 
    86656 > color #20 #e2e586ff
    86657 
    86658 > color #20 #e1e586ff
    86659 
    86660 > color #20 #cebce5ff
    86661 
    86662 > color #20 #e5e0d2ff
    86663 
    86664 > color #20 #e5c2a6ff
    86665 
    86666 > color #20 #e5b497ff
    86667 
    86668 > color #20 #e5bf89ff
    86669 
    86670 > color #20 #e5d286ff
    86671 
    86672 > hide sel cartoons
    86673 
    86674 > show sel surfaces
    86675 
    86676 > select subtract #20
    86677 
    86678 15 models selected 
    86679 
    86680 > show #!23 models
    86681 
    86682 > color #23 #3d7fbfff models
    86683 
    86684 > hide #!10 models
    86685 
    86686 > hide #!11 models
    86687 
    86688 > hide #!12 models
    86689 
    86690 > show #!12 models
    86691 
    86692 > hide #!12 models
    86693 
    86694 > hide #!13 models
    86695 
    86696 > select add #23
    86697 
    86698 124488 atoms, 126648 bonds, 15424 residues, 3 models selected 
    86699 
    86700 > hide sel cartoons
    86701 
    86702 > show sel surfaces
    86703 
    86704 [Repeated 1 time(s)]
    86705 
    86706 > select clear
    86707 
    86708 > hide #!20 models
    86709 
    86710 > show #!20 models
    86711 
    86712 > color #23 #6db8c6ff models
    86713 
    86714 > color #23 #6cc6acff models
    86715 
    86716 > color #23 #60c6bfff models
    86717 
    86718 > color #23 #6cc6bcff models
    86719 
    86720 > color #23 #67c6bdff models
    86721 
    86722 > color #20 #4f9fdfff
    86723 
    86724 > color #20 #25acdfff
    86725 
    86726 > lighting soft
    86727 
    86728 > hide #!23.2 models
    86729 
    86730 > show #!23.2 models
    86731 
    86732 > color #23.2 #25acdfff
    86733 
    86734 > select clear
    86735 
    86736 > show #!30 models
    86737 
    86738 > hide #!30 models
    86739 
    86740 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    86741 > YaleUniversity/Jun_Lab_documents/Websites/Models/fold_2025_06_16_13_42spa47c6/fold_2025_06_16_13_42spa47c6_model_0.cif
    86742 
    86743 Chain information for fold_2025_06_16_13_42spa47c6_model_0.cif #22 
    86744 --- 
    86745 Chain | Description 
    86746 A B C D E F | . 
    86747  
    86748 
    86749 > select add #22
    86750 
    86751 20088 atoms, 20418 bonds, 2580 residues, 1 model selected 
    86752 
    86753 > hide sel atoms
    86754 
    86755 > show sel cartoons
    86756 
    86757 > ui mousemode right "translate selected models"
    86758 
    86759 > view matrix models #22,1,0,0,97.105,0,1,0,390.87,0,0,1,222.34
    86760 
    86761 > view matrix models #22,1,0,0,119.46,0,1,0,491.99,0,0,1,208.01
    86762 
    86763 > ui mousemode right "rotate selected models"
    86764 
    86765 > view matrix models
    86766 > #22,-0.03505,0.70595,-0.7074,122.86,-0.0025248,-0.70789,-0.70632,489.51,-0.99938,-0.02297,0.026594,210.27
    86767 
    86768 > view matrix models
    86769 > #22,0.97443,-0.015899,-0.22415,120.34,-0.17774,-0.66484,-0.72553,489.4,-0.13749,0.74682,-0.65066,217.41
    86770 
    86771 > view matrix models
    86772 > #22,1,-0.00039656,-0.0014594,119.46,-0.0013606,-0.65725,-0.75367,489.89,-0.00066034,0.75367,-0.65725,217.73
    86773 
    86774 > ui mousemode right "translate selected models"
    86775 
    86776 > view matrix models
    86777 > #22,1,-0.00039656,-0.0014594,260,-0.0013606,-0.65725,-0.75367,235.71,-0.00066034,0.75367,-0.65725,215.95
    86778 
    86779 > view matrix models
    86780 > #22,1,-0.00039656,-0.0014594,257.06,-0.0013606,-0.65725,-0.75367,246.56,-0.00066034,0.75367,-0.65725,217.12
    86781 
    86782 > view matrix models
    86783 > #22,1,-0.00039656,-0.0014594,262.5,-0.0013606,-0.65725,-0.75367,258.86,-0.00066034,0.75367,-0.65725,196.6
    86784 
    86785 > fitmap #22 inMap #16
    86786 
    86787 Fit molecule fold_2025_06_16_13_42spa47c6_model_0.cif (#22) to map
    86788 Sortingplatforom.mrc gaussian (#16) using 20088 atoms 
    86789 average map value = 0.07671, steps = 64 
    86790 shifted from previous position = 12.3 
    86791 rotated from previous position = 19.2 degrees 
    86792 atoms outside contour = 2571, contour level = 0.030714 
    86793  
    86794 Position of fold_2025_06_16_13_42spa47c6_model_0.cif (#22) relative to
    86795 Sortingplatforom.mrc gaussian (#16) coordinates: 
    86796 Matrix rotation and translation 
    86797 0.95240268 0.04462846 0.30155834 257.45389313 
    86798 0.23440527 -0.73964801 -0.63085257 256.91227185 
    86799 0.19489305 0.67151254 -0.71490390 185.77478880 
    86800 Axis 0.98631548 0.08078044 0.14372298 
    86801 Axis point 0.00000000 90.68459302 118.58085556 
    86802 Rotation angle (degrees) 138.68355108 
    86803 Shift along axis 301.38435330 
    86804  
    86805 
    86806 > fitmap #22 inMap #16
    86807 
    86808 Fit molecule fold_2025_06_16_13_42spa47c6_model_0.cif (#22) to map
    86809 Sortingplatforom.mrc gaussian (#16) using 20088 atoms 
    86810 average map value = 0.07671, steps = 28 
    86811 shifted from previous position = 0.0746 
    86812 rotated from previous position = 0.0488 degrees 
    86813 atoms outside contour = 2559, contour level = 0.030714 
    86814  
    86815 Position of fold_2025_06_16_13_42spa47c6_model_0.cif (#22) relative to
    86816 Sortingplatforom.mrc gaussian (#16) coordinates: 
    86817 Matrix rotation and translation 
    86818 0.95256240 0.04505665 0.30098964 257.48938038 
    86819 0.23441501 -0.73935592 -0.63119126 256.97795217 
    86820 0.19409911 0.67180555 -0.71484461 185.77454038 
    86821 Axis 0.98635971 0.08091540 0.14334299 
    86822 Axis point 0.00000000 90.66267550 118.65718632 
    86823 Rotation angle (degrees) 138.66137819 
    86824 Shift along axis 301.40010415 
    86825  
    86826 
    86827 > select subtract #22
    86828 
    86829 Nothing selected 
    86830 
    86831 > show #!24 models
    86832 
    86833 > show #!27 models
    86834 
    86835 > show #!29 models
    86836 
    86837 > show #!30 models
    86838 
    86839 > color #27 #a48fb5ff
    86840 
    86841 > color #27 #aa83b5ff
    86842 
    86843 > color #27 #b57f83ff
    86844 
    86845 > color #27 #ba8387ff
    86846 
    86847 > color #27 #c68b90ff
    86848 
    86849 > hide #!26 models
    86850 
    86851 > show #!26 models
    86852 
    86853 > hide #!24 models
    86854 
    86855 > show #!24 models
    86856 
    86857 > color #24 #665abfff models
    86858 
    86859 > color #24 #2667bfff models
    86860 
    86861 > select add #24
    86862 
    86863 8484 atoms, 8670 bonds, 1050 residues, 7 models selected 
    86864 
    86865 > hide sel cartoons
    86866 
    86867 > show sel surfaces
    86868 
    86869 > select add #27
    86870 
    86871 30726 atoms, 31128 bonds, 33 pseudobonds, 3795 residues, 15 models selected 
    86872 
    86873 > hide sel cartoons
    86874 
    86875 > show sel surfaces
    86876 
    86877 > select subtract #24
    86878 
    86879 22242 atoms, 22458 bonds, 33 pseudobonds, 2745 residues, 17 models selected 
    86880 
    86881 > select subtract #27
    86882 
    86883 9 models selected 
    86884 
    86885 > select add #26
    86886 
    86887 59248 atoms, 60076 bonds, 7544 residues, 1 model selected 
    86888 
    86889 > select subtract #26
    86890 
    86891 92 models selected 
    86892 
    86893 > select add #30
    86894 
    86895 21204 atoms, 21564 bonds, 2634 residues, 7 models selected 
    86896 
    86897 > hide sel cartoons
    86898 
    86899 > show sel surfaces
    86900 
    86901 > color #30 #bfbdb3ff models
    86902 
    86903 > color #30 #bfa48aff models
    86904 
    86905 > color #30 #7fbf76ff models
    86906 
    86907 > color #30 #26bfadff models
    86908 
    86909 > color #30 #24bfa8ff models
    86910 
    86911 > color #30 #87b8bfff models
    86912 
    86913 > color #30 #92b9bfff models
    86914 
    86915 > color #30 #8bbbbfff models
    86916 
    86917 > select subtract #30
    86918 
    86919 18 models selected 
    86920 
    86921 > select add #29
    86922 
    86923 22584 atoms, 22884 bonds, 2772 residues, 13 models selected 
    86924 
    86925 > hide sel cartoons
    86926 
    86927 > show sel surfaces
    86928 
    86929 > color #29 #bc99bfff models
    86930 
    86931 > color #29 #b2a6bfff models
    86932 
    86933 > color #29 #b3bfbaff models
    86934 
    86935 > color #29 #b5bfbdff models
    86936 
    86937 > color #29 #bcbfbfff models
    86938 
    86939 > color #29 #c5c8c9ff models
    86940 
    86941 > select subtract #29
    86942 
    86943 12 models selected 
    86944 
    86945 > color #22 #ae82f2ff
    86946 
    86947 > select add #22
    86948 
    86949 20088 atoms, 20418 bonds, 2580 residues, 1 model selected 
    86950 
    86951 > hide sel cartoons
    86952 
    86953 > show sel surfaces
    86954 
    86955 > select subtract #22
    86956 
    86957 6 models selected 
    86958 
    86959 > select add #22
    86960 
    86961 20088 atoms, 20418 bonds, 2580 residues, 1 model selected 
    86962 
    86963 > color #22 #68566dff
    86964 
    86965 > color #22 #564f6dff
    86966 
    86967 > color #22 #9185b7ff
    86968 
    86969 > color #22 #9489bcff
    86970 
    86971 > select clear
    86972 
    86973 > color #22 #bcb59eff
    86974 
    86975 > color #22 #bcb69fff
    86976 
    86977 > color #22 #9c7abcff
    86978 
    86979 > color #22 #b487bcff
    86980 
    86981 > color #22 #b587bcff
    86982 
    86983 > select clear
    86984 
    86985 > hide #!9 models
    86986 
    86987 > show #!9 models
    86988 
    86989 > color #9 #e0cdcd66 models
    86990 
    86991 > color #9 #e0c4cf66 models
    86992 
    86993 > color #9 #e0c3cf66 models
    86994 
    86995 > color #9 #e0bc9e66 models
    86996 
    86997 > color #9 #e0caac66 models
    86998 
    86999 > color #9 #e0c6ac66 models
    87000 
    87001 > color #14 #daae8638 models
    87002 
    87003 > color #14 #daac8738 models
    87004 
    87005 > save /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06142025.cxs includeMaps
    87006 > true
    87007 
    87008 > show #!10 models
    87009 
    87010 > show #!13 models
    87011 
    87012 > show #!12 models
    87013 
    87014 > show #!11 models
    87015 
    87016 > color #10 #4242424d models
    87017 
    87018 > color #10 #42424214 models
    87019 
    87020 > color #10 #42424233 models
    87021 
    87022 > color #10-#13 #42424233 models
    87023 
    87024 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
    87025 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
    87026 'fromcartoons', 'fromribbons', or 'random' or a keyword 
    87027 
    87028 > color #10-13 #42424233 models
    87029 
    87030 > save /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06142025.cxs includeMaps
    87031 > true
    87032 
    87033 ——— End of log from Mon Jun 16 14:12:56 2025 ———
    87034 
    87035 opened ChimeraX session 
    87036 
    87037 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87038 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87039 > Projects/Project-with-Bill/MxiA-project/Data_Images/06202025/Segment-
    87040 > Spa47C24_06202025/Rev-Spa47C24.mrc
    87041 
    87042 Opened Rev-Spa47C24.mrc as #25, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    87043 at level 0.238, step 1, values float32 
    87044 
    87045 > select add #25
    87046 
    87047 2 models selected 
    87048 
    87049 > hide #!22 models
    87050 
    87051 > hide #!23 models
    87052 
    87053 > hide #!24 models
    87054 
    87055 > hide #!27 models
    87056 
    87057 > hide #!29 models
    87058 
    87059 > hide #!30 models
    87060 
    87061 > hide #!26 models
    87062 
    87063 > show #!26 models
    87064 
    87065 > hide #!26 models
    87066 
    87067 > show #21 models
    87068 
    87069 > hide #21 models
    87070 
    87071 > hide #!20 models
    87072 
    87073 > hide #!16 models
    87074 
    87075 > show #!16 models
    87076 
    87077 > hide #!16 models
    87078 
    87079 > hide #!14 models
    87080 
    87081 > hide #!9 models
    87082 
    87083 > hide #!12 models
    87084 
    87085 > hide #!13 models
    87086 
    87087 > ui mousemode right "translate selected models"
    87088 
    87089 > view matrix models #25,1,0,0,-4.6731,0,1,0,4.2243,0,0,1,287.52
    87090 
    87091 > ui tool show "Fit in Map"
    87092 
    87093 The cached device pixel ratio value was stale on window expose. Please file a
    87094 QTBUG which explains how to reproduce. 
    87095 
    87096 [Repeated 1 time(s)]
    87097 
    87098 > fitmap #25 inMap #11
    87099 
    87100 Fit map Rev-Spa47C24.mrc in map MxiGp.mrc gaussian using 10080 points 
    87101 correlation = 0.2019, correlation about mean = 0.2782, overlap = 40.17 
    87102 steps = 104, shift = 15.6, angle = 3.9 degrees 
    87103  
    87104 Position of Rev-Spa47C24.mrc (#25) relative to MxiGp.mrc gaussian (#11)
    87105 coordinates: 
    87106 Matrix rotation and translation 
    87107 0.99768124 -0.06805937 -0.00026768 17.28983287 
    87108 0.06805929 0.99768124 -0.00028383 -17.48536765 
    87109 0.00028638 0.00026495 0.99999992 301.72510016 
    87110 Axis 0.00403152 -0.00407037 0.99998359 
    87111 Axis point 246.62020234 227.75734102 0.00000000 
    87112 Rotation angle (degrees) 3.90259322 
    87113 Shift along axis 301.86102490 
    87114  
    87115 
    87116 > fitmap #25 inMap #11
    87117 
    87118 Fit map Rev-Spa47C24.mrc in map MxiGp.mrc gaussian using 10080 points 
    87119 correlation = 0.2024, correlation about mean = 0.2764, overlap = 40.27 
    87120 steps = 48, shift = 0.0996, angle = 0.027 degrees 
    87121  
    87122 Position of Rev-Spa47C24.mrc (#25) relative to MxiGp.mrc gaussian (#11)
    87123 coordinates: 
    87124 Matrix rotation and translation 
    87125 0.99769230 -0.06789737 0.00017026 17.18938433 
    87126 0.06789741 0.99769228 -0.00021958 -17.44859855 
    87127 -0.00015496 0.00023064 0.99999996 301.74930757 
    87128 Axis 0.00331540 0.00239493 0.99999164 
    87129 Axis point 275.41448060 229.07143673 0.00000000 
    87130 Rotation angle (degrees) 3.89326164 
    87131 Shift along axis 301.76198530 
    87132  
    87133 
    87134 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87135 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87136 > Projects/Project-with-Bill/MxiA-project/Data_Images/06202025/Segment-
    87137 > Spa47C24_06202025/MxiGp.mrc
    87138 
    87139 Opened MxiGp.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    87140 level 0.145, step 1, values float32 
    87141 
    87142 > select add #28
    87143 
    87144 4 models selected 
    87145 
    87146 > select subtract #25
    87147 
    87148 2 models selected 
    87149 
    87150 > view matrix models #28,1,0,0,-31.641,0,1,0,35.188,0,0,1,360.65
    87151 
    87152 > view matrix models #28,1,0,0,-3.7843,0,1,0,1.6165,0,0,1,357.03
    87153 
    87154 > fitmap #28 inMap #25
    87155 
    87156 Fit map MxiGp.mrc in map Rev-Spa47C24.mrc using 10077 points 
    87157 correlation = 0.3919, correlation about mean = -0.08546, overlap = 147.3 
    87158 steps = 60, shift = 15.2, angle = 7.99 degrees 
    87159  
    87160 Position of MxiGp.mrc (#28) relative to Rev-Spa47C24.mrc (#25) coordinates: 
    87161 Matrix rotation and translation 
    87162 0.99744614 -0.07142013 -0.00059740 19.30484239 
    87163 0.07142000 0.99744630 -0.00023263 -17.63417404 
    87164 0.00061249 0.00018937 0.99999979 40.33165687 
    87165 Axis 0.00295428 -0.00846985 0.99995977 
    87166 Axis point 251.38422815 259.63389258 0.00000000 
    87167 Rotation angle (degrees) 4.09572037 
    87168 Shift along axis 40.53642499 
    87169  
    87170 
    87171 > fitmap #28 inMap #11
    87172 
    87173 Fit map MxiGp.mrc in map MxiGp.mrc gaussian using 10077 points 
    87174 correlation = 0.961, correlation about mean = 0.5563, overlap = 346.8 
    87175 steps = 88, shift = 24.8, angle = 5.3 degrees 
    87176  
    87177 Position of MxiGp.mrc (#28) relative to MxiGp.mrc gaussian (#11) coordinates: 
    87178 Matrix rotation and translation 
    87179 0.99889978 -0.04689439 0.00038279 11.42802080 
    87180 0.04689465 0.99889959 -0.00070142 -12.54874811 
    87181 -0.00034948 0.00071860 0.99999968 367.04767981 
    87182 Axis 0.01513843 0.00780652 0.99985493 
    87183 Axis point 331.45563020 117.42326478 0.00000000 
    87184 Rotation angle (degrees) 2.68823404 
    87185 Shift along axis 367.06947341 
    87186  
    87187 
    87188 > fitmap #28 inMap #11
    87189 
    87190 Fit map MxiGp.mrc in map MxiGp.mrc gaussian using 10077 points 
    87191 correlation = 0.961, correlation about mean = 0.5565, overlap = 346.8 
    87192 steps = 64, shift = 0.00771, angle = 0.0204 degrees 
    87193  
    87194 Position of MxiGp.mrc (#28) relative to MxiGp.mrc gaussian (#11) coordinates: 
    87195 Matrix rotation and translation 
    87196 0.99890206 -0.04684726 0.00004850 11.44812764 
    87197 0.04684729 0.99890173 -0.00081266 -12.52510195 
    87198 -0.00001038 0.00081404 0.99999967 366.94284178 
    87199 Axis 0.01735917 0.00062837 0.99984912 
    87200 Axis point 274.67317031 101.91367915 0.00000000 
    87201 Rotation angle (degrees) 2.68553947 
    87202 Shift along axis 367.07833730 
    87203  
    87204 
    87205 > fitmap #28 inMap #11
    87206 
    87207 Fit map MxiGp.mrc in map MxiGp.mrc gaussian using 10077 points 
    87208 correlation = 0.961, correlation about mean = 0.5563, overlap = 346.8 
    87209 steps = 60, shift = 0.00906, angle = 0.0405 degrees 
    87210  
    87211 Position of MxiGp.mrc (#28) relative to MxiGp.mrc gaussian (#11) coordinates: 
    87212 Matrix rotation and translation 
    87213 0.99891218 -0.04663001 0.00030481 11.36292385 
    87214 0.04663007 0.99891221 -0.00019038 -12.53428729 
    87215 -0.00029560 0.00020438 0.99999994 367.16537813 
    87216 Axis 0.00423274 0.00643786 0.99997032 
    87217 Axis point 324.21917652 202.79431181 0.00000000 
    87218 Rotation angle (degrees) 2.67275316 
    87219 Shift along axis 367.12188246 
    87220  
    87221 
    87222 > fitmap #25 inMap #28
    87223 
    87224 Fit map Rev-Spa47C24.mrc in map MxiGp.mrc using 10080 points 
    87225 correlation = 0.2327, correlation about mean = 0.3131, overlap = 80.91 
    87226 steps = 80, shift = 1.11, angle = 7.76 degrees 
    87227  
    87228 Position of Rev-Spa47C24.mrc (#25) relative to MxiGp.mrc (#28) coordinates: 
    87229 Matrix rotation and translation 
    87230 0.98774375 -0.15605271 0.00313506 42.63040832 
    87231 0.15604726 0.98774773 0.00191419 -37.04143982 
    87232 -0.00339536 -0.00140151 0.99999325 -63.06514846 
    87233 Axis -0.01062093 0.02091837 0.99972477 
    87234 Axis point 248.33122396 249.30124290 0.00000000 
    87235 Rotation angle (degrees) 8.98018920 
    87236 Shift along axis -64.27541228 
    87237  
    87238 
    87239 > fitmap #25 inMap #28
    87240 
    87241 Fit map Rev-Spa47C24.mrc in map MxiGp.mrc using 10080 points 
    87242 correlation = 0.2327, correlation about mean = 0.3132, overlap = 80.88 
    87243 steps = 44, shift = 0.0241, angle = 0.0148 degrees 
    87244  
    87245 Position of Rev-Spa47C24.mrc (#25) relative to MxiGp.mrc (#28) coordinates: 
    87246 Matrix rotation and translation 
    87247 0.98777062 -0.15587864 0.00332499 42.52923039 
    87248 0.15587294 0.98777527 0.00191003 -37.01180036 
    87249 -0.00358207 -0.00136839 0.99999265 -63.01424518 
    87250 Axis -0.01051296 0.02214900 0.99969940 
    87251 Axis point 247.84999171 249.05653442 0.00000000 
    87252 Rotation angle (degrees) 8.97031126 
    87253 Shift along axis -64.26218570 
    87254  
    87255 
    87256 > fitmap #25 inMap #28
    87257 
    87258 Fit map Rev-Spa47C24.mrc in map MxiGp.mrc using 10080 points 
    87259 correlation = 0.2327, correlation about mean = 0.3133, overlap = 80.87 
    87260 steps = 48, shift = 0.0138, angle = 0.00547 degrees 
    87261  
    87262 Position of Rev-Spa47C24.mrc (#25) relative to MxiGp.mrc (#28) coordinates: 
    87263 Matrix rotation and translation 
    87264 0.98778295 -0.15579942 0.00337388 42.50062019 
    87265 0.15579372 0.98778780 0.00189267 -36.99721913 
    87266 -0.00362755 -0.00134392 0.99999252 -62.99637684 
    87267 Axis -0.01038406 0.02246289 0.99969375 
    87268 Axis point 247.73674760 249.08203577 0.00000000 
    87269 Rotation angle (degrees) 8.96576627 
    87270 Shift along axis -64.24947729 
    87271  
    87272 
    87273 > hide #!11 models
    87274 
    87275 > color #28 #42424233 models
    87276 
    87277 > show #!23 models
    87278 
    87279 > hide #!25 models
    87280 
    87281 > hide #!23 models
    87282 
    87283 > select subtract #28
    87284 
    87285 Nothing selected 
    87286 
    87287 > show #!23 models
    87288 
    87289 > select add #23
    87290 
    87291 124488 atoms, 126648 bonds, 15424 residues, 3 models selected 
    87292 
    87293 > hide sel surfaces
    87294 
    87295 > show sel cartoons
    87296 
    87297 > combine #23 MxiG_Jian
    87298 
    87299 Expected a keyword 
    87300 
    87301 > combine #23
    87302 
    87303 > select subtract #23
    87304 
    87305 88 models selected 
    87306 
    87307 > hide #!23 models
    87308 
    87309 > fitmap #31 inMap #28
    87310 
    87311 Fit molecule combination (#31) to map MxiGp.mrc (#28) using 124488 atoms 
    87312 average map value = 0.09267, steps = 68 
    87313 shifted from previous position = 6.94 
    87314 rotated from previous position = 1.74 degrees 
    87315 atoms outside contour = 90696, contour level = 0.14517 
    87316  
    87317 Position of combination (#31) relative to MxiGp.mrc (#28) coordinates: 
    87318 Matrix rotation and translation 
    87319 0.99703404 0.07696189 -0.00001485 -17.56932868 
    87320 -0.07696189 0.99703401 -0.00023570 21.43211382 
    87321 -0.00000333 0.00023614 0.99999997 -374.12177169 
    87322 Axis 0.00306541 -0.00007483 -0.99999530 
    87323 Axis point 269.06903722 253.55455848 0.00000000 
    87324 Rotation angle (degrees) 4.41397719 
    87325 Shift along axis 374.06455202 
    87326  
    87327 
    87328 > fitmap #31 inMap #28
    87329 
    87330 Fit molecule combination (#31) to map MxiGp.mrc (#28) using 124488 atoms 
    87331 average map value = 0.09268, steps = 40 
    87332 shifted from previous position = 0.0955 
    87333 rotated from previous position = 0.0122 degrees 
    87334 atoms outside contour = 90750, contour level = 0.14517 
    87335  
    87336 Position of combination (#31) relative to MxiGp.mrc (#28) coordinates: 
    87337 Matrix rotation and translation 
    87338 0.99704976 0.07675789 0.00003767 -17.54393107 
    87339 -0.07675788 0.99704973 -0.00026863 21.39308617 
    87340 -0.00005818 0.00026495 0.99999996 -374.21058938 
    87341 Axis 0.00347571 0.00062439 -0.99999376 
    87342 Axis point 265.83608478 255.72205291 0.00000000 
    87343 Rotation angle (degrees) 4.40226055 
    87344 Shift along axis 374.16063601 
    87345  
    87346 
    87347 > show #!13 models
    87348 
    87349 > show #!16 models
    87350 
    87351 > select add #31
    87352 
    87353 124488 atoms, 126648 bonds, 15424 residues, 1 model selected 
    87354 
    87355 > show sel surfaces
    87356 
    87357 > select subtract #31
    87358 
    87359 88 models selected 
    87360 
    87361 > volume #28 level 0.03927
    87362 
    87363 > volume #28 level 0.06221
    87364 
    87365 > show #!14 models
    87366 
    87367 > show #!9 models
    87368 
    87369 > show #!22 models
    87370 
    87371 > show #!23 models
    87372 
    87373 > show #!24 models
    87374 
    87375 > hide #!23 models
    87376 
    87377 > show #!25 models
    87378 
    87379 > hide #!25 models
    87380 
    87381 > show #!26 models
    87382 
    87383 > show #!27 models
    87384 
    87385 > show #!29 models
    87386 
    87387 > show #!30 models
    87388 
    87389 > show #!20 models
    87390 
    87391 > save /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06202025.cxs includeMaps
    87392 > true
    87393 
    87394 ——— End of log from Fri Jun 20 11:47:25 2025 ———
    87395 
    87396 opened ChimeraX session 
    87397 
    87398 > hide #!31 models
    87399 
    87400 > hide #!30 models
    87401 
    87402 > hide #!29 models
    87403 
    87404 > hide #!28 models
    87405 
    87406 > hide #!27 models
    87407 
    87408 > hide #!26 models
    87409 
    87410 > hide #!24 models
    87411 
    87412 > hide #!22 models
    87413 
    87414 > show #!28 models
    87415 
    87416 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87417 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87418 > Projects/Project-with-Bill/MxiA-project/Data_Images/06232025/Chimera-
    87419 > figure-2025/MxiGc24-segment_06232025/IMring.mrc
    87420 
    87421 Opened IMring.mrc as #32, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    87422 level 0.124, step 1, values float32 
    87423 
    87424 > select add #32
    87425 
    87426 2 models selected 
    87427 
    87428 > ui mousemode right "translate selected models"
    87429 
    87430 > view matrix models #32,1,0,0,-1.8511,0,1,0,-6.501,0,0,1,360.99
    87431 
    87432 > view orient
    87433 
    87434 > ui tool show "Fit in Map"
    87435 
    87436 The cached device pixel ratio value was stale on window expose. Please file a
    87437 QTBUG which explains how to reproduce. 
    87438 
    87439 [Repeated 1 time(s)]
    87440 
    87441 > fitmap #32 inMap #28
    87442 
    87443 Fit map IMring.mrc in map MxiGp.mrc using 10080 points 
    87444 correlation = 0.9706, correlation about mean = 0.7263, overlap = 490.4 
    87445 steps = 52, shift = 8.78, angle = 2.83 degrees 
    87446  
    87447 Position of IMring.mrc (#32) relative to MxiGp.mrc (#28) coordinates: 
    87448 Matrix rotation and translation 
    87449 0.99999640 -0.00268401 -0.00004259 0.54801834 
    87450 0.00268401 0.99999640 0.00005687 -0.85830238 
    87451 0.00004244 -0.00005698 1.00000000 0.63881912 
    87452 Axis -0.02120181 -0.01583502 0.99964981 
    87453 Axis point 316.28453482 208.81446260 0.00000000 
    87454 Rotation angle (degrees) 0.15383654 
    87455 Shift along axis 0.64056766 
    87456  
    87457 
    87458 > fitmap #32 inMap #28
    87459 
    87460 Fit map IMring.mrc in map MxiGp.mrc using 10080 points 
    87461 correlation = 0.9704, correlation about mean = 0.724, overlap = 490.8 
    87462 steps = 28, shift = 0.0629, angle = 0.00238 degrees 
    87463  
    87464 Position of IMring.mrc (#32) relative to MxiGp.mrc (#28) coordinates: 
    87465 Matrix rotation and translation 
    87466 0.99999628 -0.00272547 -0.00004487 0.55445650 
    87467 0.00272547 0.99999628 0.00005953 -0.87213119 
    87468 0.00004471 -0.00005965 1.00000000 0.57627958 
    87469 Axis -0.02185674 -0.01642789 0.99962613 
    87470 Axis point 316.79019210 207.64080376 0.00000000 
    87471 Rotation angle (degrees) 0.15621659 
    87472 Shift along axis 0.57827279 
    87473  
    87474 
    87475 > ui mousemode right "rotate selected models"
    87476 
    87477 > view matrix models
    87478 > #32,0.99922,-0.03945,0.00025588,9.2918,0.03945,0.99922,-0.00013554,-10.94,-0.00025033,0.00014553,1,367.74
    87479 
    87480 > fitmap #32 inMap #28
    87481 
    87482 Fit map IMring.mrc in map MxiGp.mrc using 10080 points 
    87483 correlation = 0.9705, correlation about mean = 0.7254, overlap = 491.1 
    87484 steps = 44, shift = 0.0116, angle = 0.535 degrees 
    87485  
    87486 Position of IMring.mrc (#32) relative to MxiGp.mrc (#28) coordinates: 
    87487 Matrix rotation and translation 
    87488 0.99999767 -0.00215842 -0.00003994 0.41231729 
    87489 0.00215842 0.99999767 0.00006305 -0.72372918 
    87490 0.00003981 -0.00006314 1.00000000 0.58850747 
    87491 Axis -0.02921407 -0.01846376 0.99940264 
    87492 Axis point 330.47722820 198.64937036 0.00000000 
    87493 Rotation angle (degrees) 0.12374226 
    87494 Shift along axis 0.58947321 
    87495  
    87496 
    87497 > fitmap #32 inMap #28
    87498 
    87499 Fit map IMring.mrc in map MxiGp.mrc using 10080 points 
    87500 correlation = 0.9705, correlation about mean = 0.7251, overlap = 491.1 
    87501 steps = 28, shift = 0.00495, angle = 0.00528 degrees 
    87502  
    87503 Position of IMring.mrc (#32) relative to MxiGp.mrc (#28) coordinates: 
    87504 Matrix rotation and translation 
    87505 0.99999747 -0.00225054 -0.00004034 0.43599311 
    87506 0.00225054 0.99999747 0.00005959 -0.74702901 
    87507 0.00004021 -0.00005968 1.00000000 0.58256698 
    87508 Axis -0.02648643 -0.01788754 0.99948912 
    87509 Axis point 327.51602251 200.23361527 0.00000000 
    87510 Rotation angle (degrees) 0.12901252 
    87511 Shift along axis 0.58408397 
    87512  
    87513 
    87514 > fitmap #32 inMap #28
    87515 
    87516 Fit map IMring.mrc in map MxiGp.mrc using 10080 points 
    87517 correlation = 0.9705, correlation about mean = 0.7251, overlap = 491.2 
    87518 steps = 28, shift = 0.00374, angle = 0.00721 degrees 
    87519  
    87520 Position of IMring.mrc (#32) relative to MxiGp.mrc (#28) coordinates: 
    87521 Matrix rotation and translation 
    87522 0.99999774 -0.00212470 -0.00004020 0.40333930 
    87523 0.00212470 0.99999774 0.00006423 -0.71525376 
    87524 0.00004006 -0.00006432 1.00000000 0.58006643 
    87525 Axis -0.03023282 -0.01887383 0.99936468 
    87526 Axis point 331.68615986 197.74816940 0.00000000 
    87527 Rotation angle (degrees) 0.12181396 
    87528 Shift along axis 0.58100339 
    87529  
    87530 
    87531 > hide #!28 models
    87532 
    87533 > close #28
    87534 
    87535 > color #32 #42424233 models
    87536 
    87537 > select clear
    87538 
    87539 > volume #32 level 0.03435
    87540 
    87541 > show #!31 models
    87542 
    87543 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87544 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87545 > Projects/Project-with-Bill/MxiA-project/Data_Images/06232025/Chimera-
    87546 > figure-2025/MxiGc24-segment_06232025/OM-complex.mrc
    87547 
    87548 Opened OM-complex.mrc as #28, grid size 120,120,70, pixel 4.3,4.3,4.3, shown
    87549 at level 0.115, step 1, values float32 
    87550 
    87551 > select add #32
    87552 
    87553 3 models selected 
    87554 
    87555 > hide #!31 models
    87556 
    87557 > select subtract #32
    87558 
    87559 Nothing selected 
    87560 
    87561 > select add #28
    87562 
    87563 2 models selected 
    87564 
    87565 > ui mousemode right "translate selected models"
    87566 
    87567 > view matrix models #28,1,0,0,0.85224,0,1,0,22.54,0,0,1,366.23
    87568 
    87569 > volume #28 level 0.02522
    87570 
    87571 > fitmap #28 inMap #13
    87572 
    87573 Fit map OM-complex.mrc in map OM_complex.mrc gaussian using 25812 points 
    87574 correlation = 0.9502, correlation about mean = 0.8712, overlap = 422 
    87575 steps = 80, shift = 23.7, angle = 0.0286 degrees 
    87576  
    87577 Position of OM-complex.mrc (#28) relative to OM_complex.mrc gaussian (#13)
    87578 coordinates: 
    87579 Matrix rotation and translation 
    87580 0.99999991 0.00001030 -0.00042764 -1.00891484 
    87581 -0.00001019 0.99999997 0.00025633 -1.11759534 
    87582 0.00042764 -0.00025633 0.99999988 366.65051617 
    87583 Axis -0.51400804 -0.85753937 -0.02054159 
    87584 Axis point -857085.69830933 0.00000000 -9453.29814582 
    87585 Rotation angle (degrees) 0.02857257 
    87586 Shift along axis -6.05461342 
    87587  
    87588 
    87589 > fitmap #28 inMap #13
    87590 
    87591 Fit map OM-complex.mrc in map OM_complex.mrc gaussian using 25812 points 
    87592 correlation = 0.9502, correlation about mean = 0.8712, overlap = 422 
    87593 steps = 24, shift = 0.000998, angle = 0.000692 degrees 
    87594  
    87595 Position of OM-complex.mrc (#28) relative to OM_complex.mrc gaussian (#13)
    87596 coordinates: 
    87597 Matrix rotation and translation 
    87598 0.99999991 0.00000125 -0.00043553 -1.00538701 
    87599 -0.00000114 0.99999997 0.00025764 -1.12011375 
    87600 0.00043554 -0.00025764 0.99999987 366.64961680 
    87601 Axis -0.50913519 -0.86068331 -0.00236848 
    87602 Axis point -841840.58360902 0.00000000 -1414.86161399 
    87603 Rotation angle (degrees) 0.02899362 
    87604 Shift along axis 0.60754009 
    87605  
    87606 
    87607 > fitmap #28 inMap #13
    87608 
    87609 Fit map OM-complex.mrc in map OM_complex.mrc gaussian using 25812 points 
    87610 correlation = 0.9502, correlation about mean = 0.8712, overlap = 422 
    87611 steps = 24, shift = 0.000617, angle = 0.000813 degrees 
    87612  
    87613 Position of OM-complex.mrc (#28) relative to OM_complex.mrc gaussian (#13)
    87614 coordinates: 
    87615 Matrix rotation and translation 
    87616 0.99999991 -0.00000783 -0.00042467 -1.00503696 
    87617 0.00000794 0.99999997 0.00025674 -1.12225863 
    87618 0.00042467 -0.00025674 0.99999988 366.65178330 
    87619 Axis -0.51729333 -0.85566059 0.01589222 
    87620 Axis point -863100.32359779 0.00000000 6717.43764727 
    87621 Rotation angle (degrees) 0.02843650 
    87622 Shift along axis 7.30708177 
    87623  
    87624 
    87625 > select subtract #28
    87626 
    87627 Nothing selected 
    87628 
    87629 > color #28 skyblue models
    87630 
    87631 > color #28 #42424233 models
    87632 
    87633 > select clear
    87634 
    87635 > close #13
    87636 
    87637 > show #!31 models
    87638 
    87639 > save /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06232025.cxs includeMaps
    87640 > true
    87641 
    87642 > show #!29 models
    87643 
    87644 > show #!30 models
    87645 
    87646 > show #!27 models
    87647 
    87648 > show #!26 models
    87649 
    87650 > hide #!26 models
    87651 
    87652 > show #!26 models
    87653 
    87654 > show #!25 models
    87655 
    87656 > show #!24 models
    87657 
    87658 > hide #!25 models
    87659 
    87660 > view orient
    87661 
    87662 > turn x 90
    87663 
    87664 [Repeated 2 time(s)]
    87665 
    87666 > hide #!31 models
    87667 
    87668 > show #!31 models
    87669 
    87670 > save /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06232025.cxs includeMaps
    87671 > true
    87672 
    87673 ——— End of log from Mon Jun 23 14:56:34 2025 ———
    87674 
    87675 opened ChimeraX session 
    87676 
    87677 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87678 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87679 > Projects/Project-with-Bill/MxiA-project/Data_Images/06232025/Chimera/Pod-
    87680 > bin2.mrc
    87681 
    87682 Opened Pod-bin2.mrc as #13, grid size 50,50,70, pixel 1, shown at level 0.181,
    87683 step 1, values float32 
    87684 
    87685 > close #13
    87686 
    87687 > open /Users/shoichi/Desktop/Chimera/Pod-bin2.mrc
    87688 
    87689 Opened Pod-bin2.mrc as #13, grid size 50,50,70, pixel 1, shown at level 0.181,
    87690 step 1, values float32 
    87691 
    87692 > close #13
    87693 
    87694 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87695 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87696 > Projects/Project-with-Bill/MxiA-project/Data_Images/06232025/Chimera/Pod-
    87697 > bin2.mrc
    87698 
    87699 Opened Pod-bin2.mrc as #13, grid size 50,50,70, pixel 4.3,4.3,4.3, shown at
    87700 level 0.181, step 1, values float32 
    87701 
    87702 > select add #13
    87703 
    87704 2 models selected 
    87705 
    87706 > ui mousemode right "rotate selected models"
    87707 
    87708 > view matrix models
    87709 > #13,-0.62851,-0.25056,0.73634,133.49,-0.35934,0.93315,0.01081,47.376,-0.68982,-0.2578,-0.67652,291.48
    87710 
    87711 > hide #!31 models
    87712 
    87713 > hide #!30 models
    87714 
    87715 > hide #!29 models
    87716 
    87717 > hide #!28 models
    87718 
    87719 > hide #!27 models
    87720 
    87721 > hide #!26 models
    87722 
    87723 > hide #!24 models
    87724 
    87725 > view matrix models
    87726 > #13,-0.56339,0.70615,-0.42888,160.05,-0.80773,-0.5799,0.10626,238.96,-0.17367,0.40628,0.89709,-8.5629
    87727 
    87728 > volume #13 level 0.05361
    87729 
    87730 > ui mousemode right zoom
    87731 
    87732 > ui mousemode right "translate selected models"
    87733 
    87734 > view matrix models
    87735 > #13,-0.56339,0.70615,-0.42888,180.18,-0.80773,-0.5799,0.10626,320.53,-0.17367,0.40628,0.89709,-23.592
    87736 
    87737 > view matrix models
    87738 > #13,-0.56339,0.70615,-0.42888,198.51,-0.80773,-0.5799,0.10626,353.08,-0.17367,0.40628,0.89709,104.86
    87739 
    87740 > view matrix models
    87741 > #13,-0.56339,0.70615,-0.42888,200.93,-0.80773,-0.5799,0.10626,348.39,-0.17367,0.40628,0.89709,110.48
    87742 
    87743 > ui mousemode right "rotate selected models"
    87744 
    87745 > view matrix models
    87746 > #13,-0.56577,0.75796,-0.32467,184.87,-0.78983,-0.61123,-0.050592,366.07,-0.23679,0.22781,0.94447,131.35
    87747 
    87748 > view matrix models
    87749 > #13,-0.56994,0.77677,-0.26797,177.44,-0.77686,-0.61563,-0.13225,373.61,-0.26769,0.1328,0.95431,143.76
    87750 
    87751 > view matrix models
    87752 > #13,-0.59158,0.7929,-0.14611,165.41,-0.79569,-0.6034,-0.052845,366.09,-0.13006,0.084995,0.98786,130.76
    87753 
    87754 > ui mousemode right "translate selected models"
    87755 
    87756 > view matrix models
    87757 > #13,-0.59158,0.7929,-0.14611,181.42,-0.79569,-0.6034,-0.052845,360.3,-0.13006,0.084995,0.98786,131.39
    87758 
    87759 > view matrix models
    87760 > #13,-0.59158,0.7929,-0.14611,183.9,-0.79569,-0.6034,-0.052845,353.78,-0.13006,0.084995,0.98786,132.36
    87761 
    87762 > ui tool show "Fit in Map"
    87763 
    87764 The cached device pixel ratio value was stale on window expose. Please file a
    87765 QTBUG which explains how to reproduce. 
    87766 
    87767 [Repeated 1 time(s)]
    87768 
    87769 > fitmap #13 inMap #16
    87770 
    87771 Fit map Pod-bin2.mrc in map Sortingplatforom.mrc gaussian using 3880 points 
    87772 correlation = 0.9089, correlation about mean = 0.6155, overlap = 73.9 
    87773 steps = 64, shift = 8.12, angle = 10.4 degrees 
    87774  
    87775 Position of Pod-bin2.mrc (#13) relative to Sortingplatforom.mrc gaussian (#16)
    87776 coordinates: 
    87777 Matrix rotation and translation 
    87778 -0.49998850 0.86591937 -0.01396970 146.49877400 
    87779 -0.86568359 -0.50017984 -0.02029886 345.53810317 
    87780 -0.02456454 0.00194414 0.99969635 131.60389066 
    87781 Axis 0.01284403 0.00611790 -0.99989880 
    87782 Axis point 174.04689439 130.41714716 0.00000000 
    87783 Rotation angle (degrees) 120.01561447 
    87784 Shift along axis -127.59497143 
    87785  
    87786 
    87787 > fitmap #13 inMap #16
    87788 
    87789 Fit map Pod-bin2.mrc in map Sortingplatforom.mrc gaussian using 3880 points 
    87790 correlation = 0.9088, correlation about mean = 0.6148, overlap = 73.9 
    87791 steps = 28, shift = 0.0927, angle = 0.054 degrees 
    87792  
    87793 Position of Pod-bin2.mrc (#13) relative to Sortingplatforom.mrc gaussian (#16)
    87794 coordinates: 
    87795 Matrix rotation and translation 
    87796 -0.49966043 0.86610757 -0.01404011 146.53723891 
    87797 -0.86585038 -0.49985515 -0.02116456 345.59394112 
    87798 -0.02534881 0.00158154 0.99967741 131.74934474 
    87799 Axis 0.01313176 0.00652873 -0.99989246 
    87800 Axis point 174.16008568 130.43268391 0.00000000 
    87801 Rotation angle (degrees) 119.99464694 
    87802 Shift along axis -127.55459674 
    87803  
    87804 
    87805 > fitmap #13 inMap #16
    87806 
    87807 Fit map Pod-bin2.mrc in map Sortingplatforom.mrc gaussian using 3880 points 
    87808 correlation = 0.9088, correlation about mean = 0.6151, overlap = 73.9 
    87809 steps = 40, shift = 0.0297, angle = 0.0238 degrees 
    87810  
    87811 Position of Pod-bin2.mrc (#13) relative to Sortingplatforom.mrc gaussian (#16)
    87812 coordinates: 
    87813 Matrix rotation and translation 
    87814 -0.49987809 0.86598362 -0.01393777 146.53795431 
    87815 -0.86573423 -0.50006965 -0.02084657 345.56114042 
    87816 -0.02502265 0.00164565 0.99968553 131.69801715 
    87817 Axis 0.01298703 0.00640042 -0.99989518 
    87818 Axis point 174.10786181 130.42494455 0.00000000 
    87819 Rotation angle (degrees) 120.00867435 
    87820 Shift along axis -127.56938498 
    87821  
    87822 
    87823 > view matrix models
    87824 > #13,-0.49988,0.86598,-0.013938,147.32,-0.86573,-0.50007,-0.020847,345.12,-0.025023,0.0016457,0.99969,131.68
    87825 
    87826 > fitmap #13 inMap #16
    87827 
    87828 Fit map Pod-bin2.mrc in map Sortingplatforom.mrc gaussian using 3880 points 
    87829 correlation = 0.9089, correlation about mean = 0.6152, overlap = 73.9 
    87830 steps = 36, shift = 0.918, angle = 0.013 degrees 
    87831  
    87832 Position of Pod-bin2.mrc (#13) relative to Sortingplatforom.mrc gaussian (#16)
    87833 coordinates: 
    87834 Matrix rotation and translation 
    87835 -0.50004472 0.86588748 -0.01393389 146.55140000 
    87836 -0.86564108 -0.50023594 -0.02072486 345.56008108 
    87837 -0.02491563 0.00169838 0.99968811 131.68108155 
    87838 Axis 0.01294863 0.00634156 -0.99989605 
    87839 Axis point 174.08737958 130.42744448 0.00000000 
    87840 Rotation angle (degrees) 120.01960324 
    87841 Shift along axis -127.57836293 
    87842  
    87843 
    87844 > fitmap #13 inMap #16
    87845 
    87846 Fit map Pod-bin2.mrc in map Sortingplatforom.mrc gaussian using 3880 points 
    87847 correlation = 0.9089, correlation about mean = 0.6152, overlap = 73.9 
    87848 steps = 40, shift = 0.00476, angle = 0.00411 degrees 
    87849  
    87850 Position of Pod-bin2.mrc (#13) relative to Sortingplatforom.mrc gaussian (#16)
    87851 coordinates: 
    87852 Matrix rotation and translation 
    87853 -0.49998717 0.86592045 -0.01395047 146.54718424 
    87854 -0.86567461 -0.50017877 -0.02070403 345.55457196 
    87855 -0.02490577 0.00172481 0.99968831 131.67705964 
    87856 Axis 0.01295136 0.00632605 -0.99989612 
    87857 Axis point 174.09092137 130.42149269 0.00000000 
    87858 Rotation angle (degrees) 120.01580111 
    87859 Shift along axis -127.57939777 
    87860  
    87861 
    87862 > fitmap #13 inMap #16
    87863 
    87864 Fit map Pod-bin2.mrc in map Sortingplatforom.mrc gaussian using 3880 points 
    87865 correlation = 0.9089, correlation about mean = 0.6156, overlap = 73.9 
    87866 steps = 40, shift = 0.064, angle = 0.0268 degrees 
    87867  
    87868 Position of Pod-bin2.mrc (#13) relative to Sortingplatforom.mrc gaussian (#16)
    87869 coordinates: 
    87870 Matrix rotation and translation 
    87871 -0.50009398 0.86585883 -0.01394651 146.50725354 
    87872 -0.86562416 -0.50028463 -0.02025095 345.53797281 
    87873 -0.02451169 0.00194505 0.99969765 131.59682942 
    87874 Axis 0.01281778 0.00610120 -0.99989923 
    87875 Axis point 174.03474038 130.42044838 0.00000000 
    87876 Rotation angle (degrees) 120.02252842 
    87877 Shift along axis -127.59747599 
    87878  
    87879 
    87880 > hide #!13 models
    87881 
    87882 > show #!17 models
    87883 
    87884 > hide #!17 models
    87885 
    87886 > show #!30 models
    87887 
    87888 > show #!29 models
    87889 
    87890 > show #!28 models
    87891 
    87892 > hide #!28 models
    87893 
    87894 > show #!27 models
    87895 
    87896 > hide #!27 models
    87897 
    87898 > show #!24 models
    87899 
    87900 > select subtract #13
    87901 
    87902 Nothing selected 
    87903 
    87904 > show #!13 models
    87905 
    87906 > color #13 #42424233 models
    87907 
    87908 > hide #!16 models
    87909 
    87910 > save /Users/shoichi/Desktop/Shigella-ipaDnull-bin2-06232025.cxs includeMaps
    87911 > true
    87912 
    87913 ——— End of log from Mon Jun 23 16:35:51 2025 ———
    87914 
    87915 opened ChimeraX session 
    87916 
    87917 > hide #!32 models
    87918 
    87919 > show #!32 models
    87920 
    87921 > hide #!30 models
    87922 
    87923 > hide #!29 models
    87924 
    87925 > hide #!24.6 models
    87926 
    87927 > show #!24.6 models
    87928 
    87929 > hide #!24 models
    87930 
    87931 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87932 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87933 > Projects/Project-with-Bill/MxiA-project/Data_Images/06232025/Chimera-
    87934 > figure-2025/MxiGc24-segment_06232025/Exp.mrc
    87935 
    87936 Opened Exp.mrc as #33, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at level
    87937 0.0223, step 1, values float32 
    87938 
    87939 > open /Users/shoichi/Library/CloudStorage/OneDrive-
    87940 > YaleUniversity/Jun_Lab_documents/Project-documents/Shigella-
    87941 > Projects/Project-with-Bill/MxiA-project/Data_Images/06232025/Chimera-
    87942 > figure-2025/Rev-Sfc24.mrc
    87943 
    87944 Opened Rev-Sfc24.mrc as #34, grid size 120,120,70, pixel 4.3,4.3,4.3, shown at
    87945 level 0.18, step 1, values float32 
    87946 
    87947 > select add #34
    87948 
    87949 2 models selected 
    87950 
    87951 > ui mousemode right "translate selected models"
    87952 
    87953 > view matrix models #34,1,0,0,11.288,0,1,0,-42.246,0,0,1,376.35
    87954 
    87955 > ui tool show "Fit in Map"
    87956 
    87957 The cached device pixel ratio value was stale on window expose. Please file a
    87958 QTBUG which explains how to reproduce. 
    87959 
    87960 [Repeated 1 time(s)]
    87961 
    87962 > fitmap #34 inMap #32
    87963 
    87964 Fit map Rev-Sfc24.mrc in map IMring.mrc using 10080 points 
    87965 correlation = 0.04856, correlation about mean = 0.1798, overlap = 12.51 
    87966 steps = 172, shift = 18.7, angle = 3.26 degrees 
    87967  
    87968 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    87969 Matrix rotation and translation 
    87970 0.99999192 -0.00211181 -0.00342002 6.05102135 
    87971 0.00202545 0.99968387 -0.02506126 -51.18900847 
    87972 0.00347187 0.02505413 0.99968007 -11.47223564 
    87973 Axis 0.98737942 -0.13578481 0.08151294 
    87974 Axis point 0.00000000 471.57862028 -1983.53947835 
    87975 Rotation angle (degrees) 1.45420739 
    87976 Shift along axis 11.99020796 
    87977  
    87978 
    87979 > fitmap #34 inMap #32
    87980 
    87981 Fit map Rev-Sfc24.mrc in map IMring.mrc using 10080 points 
    87982 correlation = 0.04808, correlation about mean = 0.1795, overlap = 12.41 
    87983 steps = 64, shift = 1.29, angle = 0.0595 degrees 
    87984  
    87985 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    87986 Matrix rotation and translation 
    87987 0.99998810 -0.00206758 -0.00441924 4.90446280 
    87988 0.00195746 0.99969100 -0.02478033 -51.38519993 
    87989 0.00446911 0.02477139 0.99968315 -11.60966081 
    87990 Axis 0.98115932 -0.17599578 0.07969864 
    87991 Axis point 0.00000000 484.84770651 -1987.83944704 
    87992 Rotation angle (degrees) 1.44696503 
    87993 Shift along axis 12.93036354 
    87994  
    87995 
    87996 > volume #34 level 0.03602
    87997 
    87998 > volume #34 level 0.09177
    87999 
    88000 > view orient
    88001 
    88002 > ui tool show "Side View"
    88003 
    88004 > select add #34
    88005 
    88006 3 models selected 
    88007 
    88008 > view matrix models
    88009 > #34,0.9987,-0.050796,-0.0029443,9.6384,0.050706,0.9984,-0.025094,-36.178,0.0042143,0.024913,0.99968,356.13
    88010 
    88011 > volume #34 level 0.1289
    88012 
    88013 > ui mousemode right "rotate selected models"
    88014 
    88015 > view matrix models
    88016 > #34,0.98582,-0.16779,2.5626e-05,42.68,0.16774,0.98551,-0.025266,-62.996,0.0042143,0.024913,0.99968,356.13
    88017 
    88018 > view matrix models
    88019 > #34,0.97905,-0.20362,0.00094705,53.525,0.20358,0.97873,-0.025249,-70.491,0.0042143,0.024913,0.99968,356.13
    88020 
    88021 > fitmap #34 inMap #32
    88022 
    88023 Fit map Rev-Sfc24.mrc in map IMring.mrc using 24548 points 
    88024 correlation = 0.7283, correlation about mean = 0.6591, overlap = 525.3 
    88025 steps = 96, shift = 26.3, angle = 9.07 degrees 
    88026  
    88027 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88028 Matrix rotation and translation 
    88029 1.00000000 -0.00005124 0.00003157 0.01118532 
    88030 0.00005124 1.00000000 0.00002780 -0.01372703 
    88031 -0.00003157 -0.00002779 1.00000000 0.09007187 
    88032 Axis -0.41924703 0.47624459 0.77293144 
    88033 Axis point 810.60604599 695.98979865 0.00000000 
    88034 Rotation angle (degrees) 0.00379852 
    88035 Shift along axis 0.05839255 
    88036  
    88037 
    88038 > fitmap #34 inMap #32
    88039 
    88040 Fit map Rev-Sfc24.mrc in map IMring.mrc using 24548 points 
    88041 correlation = 0.7283, correlation about mean = 0.6589, overlap = 525.3 
    88042 steps = 24, shift = 0.0936, angle = 0.0234 degrees 
    88043  
    88044 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88045 Matrix rotation and translation 
    88046 0.99999993 0.00035249 0.00008781 -0.07085793 
    88047 -0.00035250 0.99999994 0.00003190 0.11012226 
    88048 -0.00008780 -0.00003193 1.00000000 0.01904066 
    88049 Axis -0.08751818 0.24077135 -0.96662802 
    88050 Axis point 302.59590163 197.52194537 0.00000000 
    88051 Rotation angle (degrees) 0.02089382 
    88052 Shift along axis 0.01431041 
    88053  
    88054 
    88055 > fitmap #34 inMap #32
    88056 
    88057 Fit map Rev-Sfc24.mrc in map IMring.mrc using 24548 points 
    88058 correlation = 0.7283, correlation about mean = 0.6591, overlap = 525.6 
    88059 steps = 44, shift = 0.0424, angle = 0.0144 degrees 
    88060  
    88061 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88062 Matrix rotation and translation 
    88063 0.99999999 0.00010817 0.00003312 -0.03041882 
    88064 -0.00010817 0.99999999 0.00004000 0.02113275 
    88065 -0.00003311 -0.00004001 1.00000000 -0.01031539 
    88066 Axis -0.33339844 0.27598716 -0.90148576 
    88067 Axis point 130.87338983 203.33061577 0.00000000 
    88068 Rotation angle (degrees) 0.00687481 
    88069 Shift along axis 0.02527314 
    88070  
    88071 
    88072 > volume #34 level 0.06461
    88073 
    88074 > fitmap #34 inMap #32
    88075 
    88076 Fit map Rev-Sfc24.mrc in map IMring.mrc using 73104 points 
    88077 correlation = 0.656, correlation about mean = 0.6574, overlap = 599.6 
    88078 steps = 28, shift = 0.134, angle = 0.013 degrees 
    88079  
    88080 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88081 Matrix rotation and translation 
    88082 0.99999999 -0.00011364 0.00000035 0.02707610 
    88083 0.00011364 0.99999999 0.00000271 -0.03152306 
    88084 -0.00000035 -0.00000271 1.00000000 0.10540233 
    88085 Axis -0.02383402 0.00310652 0.99971110 
    88086 Axis point 280.27565978 260.19631750 0.00000000 
    88087 Rotation angle (degrees) 0.00651282 
    88088 Shift along axis 0.10462863 
    88089  
    88090 
    88091 > fitmap #34 inMap #32
    88092 
    88093 Fit map Rev-Sfc24.mrc in map IMring.mrc using 73104 points 
    88094 correlation = 0.656, correlation about mean = 0.6572, overlap = 599.3 
    88095 steps = 28, shift = 0.0685, angle = 0.0202 degrees 
    88096  
    88097 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88098 Matrix rotation and translation 
    88099 0.99999997 0.00021169 0.00009331 -0.11794174 
    88100 -0.00021170 0.99999997 0.00010461 0.02003968 
    88101 -0.00009329 -0.00010463 0.99999999 0.11709633 
    88102 Axis -0.41204757 0.36747303 -0.83377478 
    88103 Axis point 166.90748032 638.26875088 0.00000000 
    88104 Rotation angle (degrees) 0.01454750 
    88105 Shift along axis -0.04167032 
    88106  
    88107 
    88108 > fitmap #34 inMap #32
    88109 
    88110 Fit map Rev-Sfc24.mrc in map IMring.mrc using 73104 points 
    88111 correlation = 0.656, correlation about mean = 0.6573, overlap = 599.7 
    88112 steps = 48, shift = 0.0318, angle = 0.0262 degrees 
    88113  
    88114 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88115 Matrix rotation and translation 
    88116 0.99999996 -0.00024012 0.00015471 0.00104880 
    88117 0.00024011 0.99999997 0.00007400 -0.06837207 
    88118 -0.00015472 -0.00007396 0.99999999 0.10748545 
    88119 Axis -0.25071948 0.52433369 0.81376528 
    88120 Axis point 396.90456660 57.92191754 0.00000000 
    88121 Rotation angle (degrees) 0.01690620 
    88122 Shift along axis 0.05135519 
    88123  
    88124 
    88125 > fitmap #34 inMap #32
    88126 
    88127 Fit map Rev-Sfc24.mrc in map IMring.mrc using 73104 points 
    88128 correlation = 0.656, correlation about mean = 0.6574, overlap = 599.9 
    88129 steps = 44, shift = 0.0174, angle = 0.0244 degrees 
    88130  
    88131 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88132 Matrix rotation and translation 
    88133 0.99999997 0.00018407 0.00013268 -0.10497284 
    88134 -0.00018408 0.99999998 0.00005271 0.04530194 
    88135 -0.00013267 -0.00005273 0.99999999 0.07911296 
    88136 Axis -0.22632514 0.56953920 -0.79019114 
    88137 Axis point 286.12831174 586.25659376 -0.00000000 
    88138 Rotation angle (degrees) 0.01334694 
    88139 Shift along axis -0.01295514 
    88140  
    88141 
    88142 > fitmap #34 inMap #32
    88143 
    88144 Fit map Rev-Sfc24.mrc in map IMring.mrc using 73104 points 
    88145 correlation = 0.656, correlation about mean = 0.6575, overlap = 600.4 
    88146 steps = 40, shift = 0.0481, angle = 0.0195 degrees 
    88147  
    88148 Position of Rev-Sfc24.mrc (#34) relative to IMring.mrc (#32) coordinates: 
    88149 Matrix rotation and translation 
    88150 0.99999999 -0.00012348 -0.00000077 0.03414568 
    88151 0.00012348 0.99999999 -0.00000200 -0.03116819 
    88152 0.00000077 0.00000200 1.00000000 0.01984330 
    88153 Axis 0.01621715 -0.00624124 0.99984901 
    88154 Axis point 251.39042668 273.80768471 0.00000000 
    88155 Rotation angle (degrees) 0.00707597 
    88156 Shift along axis 0.02058858 
    88157  
    88158 
    88159 > select subtract #34
    88160 
    88161 Nothing selected 
    88162 
    88163 > hide #!32 models
    88164 
    88165 > select add #33
    88166 
    88167 3 models selected 
    88168 
    88169 > view matrix models
    88170 > #33,0.98106,0.19355,-0.0078346,-43.471,0.063676,-0.28404,0.9567,170.14,0.18294,-0.93908,-0.29098,384.62
    88171 
    88172 > undo
    88173 
    88174 > ui mousemode right "translate selected models"
    88175 
    88176 > view matrix models #33,1,0,0,-0.75143,0,1,0,18.436,0,0,1,379.44
    88177 
    88178 > fitmap #33 inMap #34
    88179 
    88180 Fit map Exp.mrc in map Rev-Sfc24.mrc using 10071 points 
    88181 correlation = 0.9623, correlation about mean = 0.9032, overlap = 34.69 
    88182 steps = 188, shift = 23.9, angle = 2.4 degrees 
    88183  
    88184 Position of Exp.mrc (#33) relative to Rev-Sfc24.mrc (#34) coordinates: 
    88185 Matrix rotation and translation 
    88186 0.99588889 0.09058030 -0.00072100 -22.17556000 
    88187 -0.09058090 0.99588874 -0.00084381 24.54560282 
    88188 0.00064160 0.00090564 0.99999938 -2.67284634 
    88189 Axis 0.00965615 -0.00752091 -0.99992509 
    88190 Axis point 259.51145442 256.83725865 0.00000000 
    88191 Rotation angle (degrees) 5.19739984 
    88192 Shift along axis 2.27391049 
    88193  
    88194 
    88195 > fitmap #33 inMap #34
    88196 
    88197 Fit map Exp.mrc in map Rev-Sfc24.mrc using 10071 points 
    88198 correlation = 0.962, correlation about mean = 0.9024, overlap = 34.68 
    88199 steps = 40, shift = 0.0652, angle = 0.0818 degrees 
    88200  
    88201 Position of Exp.mrc (#33) relative to Rev-Sfc24.mrc (#34) coordinates: 
    88202 Matrix rotation and translation 
    88203 0.99575869 0.09200098 -0.00066475 -22.57071480 
    88204 -0.09200152 0.99575852 -0.00082777 24.91166536 
    88205 0.00058577 0.00088542 0.99999944 -2.65375957 
    88206 Axis 0.00931010 -0.00679576 -0.99993357 
    88207 Axis point 259.07093181 257.50470889 0.00000000 
    88208 Rotation angle (degrees) 5.27909982 
    88209 Shift along axis 2.27415413 
    88210  
     1182[deleted to fit within ticket limits]
     1183
    882111184
    882121185> hide #!34 models